<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-03-07 04:40:20"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0102J11-sylo5/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-0K1fxY/lycopersicum_combined_unigene_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-0K1fxY/lycopersicum_combined_unigene_seqs" ref_id="SGN-U329358" ref_strand="+" ref_description="SGN-U329358        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | alpha, alpha-trehalose-phosphate synthase, UDP-forming, putative / trehalose-6-phosphate synthase, putative / UDP-glucose-glucosephosphate glucosyltransferase, putative, similar to trehalose-6-phosphate synthase SL-TPS/P (Selaginella lepidophylla) GI:4100325; contains Pfam profiles PF00982: Glycosyltransferase family 20, PF02358: Trehalose-phosphatase | chr1:29555667-29565684 REVERSE | Aliases: T30F21.9, T30F21_9(evalue: 2e-15, score=79) genbank/nr: gi|15218422|ref|NP_177979.1| alpha,alpha-trehalose-phosphate synthase, UDP-forming (trehalose-6-phosphate synthase/UDP-glucose-glucosephosphate glucosyltransferase), putative [Arabidopsis thaliana] gi|25347127|pir||D96814 trehalose-6-phosphate synthase [imported] - Arabidopsis thaliana gi|4836875|gb|AAD30578.1| trehalose-6-phosphate synthase [Arabidopsis thaliana](evalue: 9e-14, score=79)">
      <seq>tctcctataacacatccgccactctattttactctataaatactctatctttcaattttaaccacatttcaaatttcagaatctaatccttcatcgctcctcttcaatttcagactagcagaaacactttccgcacggtgtttcagaatctaaacaatcatcgatctctgctttaatttcaggtggtcttgttctagacagatgccagggaacaagtataccggcaaccaagcggttgctagcactcgattggagaggctattgagagaaagagagcttaggaaaagtagcaaagtttctcactttccaaatgaatctactgataacaataggggaaacgagctctctgaccatgattttcgccaaggagaagctgataatggaggagtttcatatgtcgaacagtacctcgaaggagctgcactagcatataatgaaggatgggagcggcctgatggaaagcccaccagacaacgactcttggttgtggcaaacaggttacctgtctctgcagtaaggagaggcgaggaatcctggtctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0102J11-sylo5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0102J11.1" temp_strand="+" temp_description="C07HBa0102J11.1  AC210354.1 htgs_phase:3 submitted_to_sgn_as:C07HBa0102J11 upload_account_name:france">
        <position start="1" stop="4263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90" g_stop="202" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="203" i_stop="317" i_length="115">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="318" g_stop="386" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="182" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="387" i_stop="3604" i_length="3218">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.802" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3605" g_stop="3963" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="541" r_length="359" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0102J11.1" gen_strand="+" ref_id="SGN-U329358" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0102J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U329358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90" e_stop="202"/>
          <exon e_start="318" e_stop="386"/>
          <exon e_start="3605" e_stop="3963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTATAACACATCCGCCACTCTATTTTACTCTATAAATACTCTATCTTTCAATTTTAACCACATTTCAAATTTCAGAATCTAATCCTTCATCGCTCCTCTTCAATTTCAGGTATATATATATGTATACTTCTTCTGTAATCCATCCGATGTTTAATTTGTTGCATTCAATTTTTTCATGATTGAGTAATCTGGATTTGAATTTGCAATCGCAAAATCGGTTGCAGACTAGCAGAAACACTTTCCGCACGGTGTTTCAGAATCTAAACAATCATCGATCTCTGCTTTAATTTCAGGTACGTTTTTCATTTTTTTTTCTCCGTTCTGGAATCTGCCGATTGTTGATGATGTTTATCTATCTATATGCATGAAATTTATCACGAAATCGCTGAAATTCTGGTTGTTATAAGCAGTTTGCTATATATATATATTCTGTTTGTACGATTTTTGGATGAAGTTTTATATATATACTATATATAGATATAGATATCGTTGAACGTGAAATAGAAAAGAATTGCTTGGTCAGATCTAGATAGTAAATTTTTGAATTTTGAGGAGAGTACAAATGGAAGTGTATCTGCAAGGTGACGTAAAAAAGGTGCACTGGTAGTCCGCCACTCCATCCTGAATGCAGGAGCTGTACTGTTGTGTTTGCCCACTCAACTTGCCAAATTTCAAAAGCATGAAAAATTGGTAAACGAAACATTTTATTAAGAAATAAAATAATATTAACATAACAAACTAGATATTTTTTAGTCTTACTTGCTTATGTGGATTGTAGAATTTTTTTTAAAAAACGTTAAATTCACTCTAAGTCCTTTATTTTTATTTTTTTTGGTAAAAATGTAAAGTCCTTTAATTCATTTTTTTTATATAAAATATATTGAAAAATTATAGTCAAAAATAAAAGTGACGCATAAATACAAACGGACGGAGGTTGAAATTTATAACTTATGGGTGGAAAATTTTTTCCACTTTTTTGGAAAATAAGTACTTTTCATATTTAGTTTCAATTTTATCTCAAAAATATTATGACAGGGATAGGATGGTCTAAGGATATAAAATATTACTTTGTTTTCTCTGGAACTTGAAAATACTTTATGAAAATTATATTTCGTTATACCAACTCACCTTATATTAGAGTTTACATTTATATCTTATATATATATATATATATATATATTTAAATACTAATATAAAGTCTAGATAAAAATTATTATGTTCGTCTGAATCCAGACCTAATATTATAATTTAGGATTTCCCTTATAATTTCATTCAAGAAATTAATCTGTAAATGTCACCTTTCACTTTATTTTCCACTATACTGTTGCAAAAGAGAGAAATCAGAAAAGCTTGTGAATTTTATTTTGTTGTTGCTCTTATTGTTATTTTTTTTTGAAAAGATTCGGTTAGTTATGAGGATTGATGTGAACGCTAACCTCGTGAATCATAAATATTAAACCCACATTGATTCCGTTGTTATATATACAGCTCATCATACACACAAATTTTGTAATATCTCATTTTAATTTATTTATCCAATTTTAAAAAATTAAAATGTTATAATATCATTTCATACTGTCAAAGTATTTTTACTTGGTATAACGAATTATTATTGTTATCGACTCTTTGTCTTTGTGTCATTTAAATATGTGTTGAAACTTTTACTAACAATTATGATTATGTTGAGAATTTTTAGAAGCCTCATACTTTGCTGGACCCACCTTGTATAGGTTGGTGAGACAACGCTATATTAATATGGGTCCCTAATGCCTTATACAAAGGAAAATCATATTCTAGATTCCTTCTCAGATATTTAAAACAAAGGATTATTTTTTTATATACAAACACAAGGCAGTTCATTGCAAAATTCCACAGATTGTGAAAATAATAAAAAGCTTTTCGATATATAGTAAGTAAAGTAAATTAAATTTTTTTTGTTACTGTTTGTTTGTTTGCTTTTTTTTTTAATATTAGTTATGCCTTATTACTTGTCCGTTTTGACAAATCAAGAAATGATAATTTTTTTTTACCTATTATATCCTCAATTAATTATTTTAAAAAGGTAATTTTTTTTTGTTCTTATTAATAGATGTATCAATTCAATAATGGATAAGTAGATTTTCATAAATAAAATATGAGTATCTCTTGAGGCGTCGTATTAATAAATCATGTATCTTCAAATTTCTTTTAATAAATAATTTTATAAAGATTCAATAATAGTAATAACTAATTATTCTTTAATATAATTTTTTTATTTTTTTTATTTAAGTTTTGTAAAATTTAAAGGTATAAATCTTTCTTTTTACAACATATAAATTTATGATGAAGCTTTACATTTTTATACGGCTGATTATCTACTTTGTTTATTAAAGGTTTATCCCAAAATAATAAAATAACAAAAAATATAACATTAATCAAAATTAAAATTAATGATAATGATGGAGAATTAAAATTCGAGGTGGGCTAGATAGATGAGTAATTTTAGATTAATTCCAGGAATGTGCAGTCCGCGCAGCCTTTGAGGCCTTTTAAAAATAGGAATCTGAAAAAATAAAAAATCTGTGTGTCAGCTGCATGGCTGTAAGGCTTTATGCACCTTTTAAAGCTTACACGAGGATTCGTCTGCTCTTCCACTTCCCCTCTTTAGCTATGATAATAATTCCTCTGCCACCCGGTATTATCGATTTGCTCTCACAAATTCATCATCAAATGCTACTAATTTTTAATAATTACTCATAATTATTGTTGTGATCAAGCTTTTCCGGCCGGTTATCGATGTTGAGATCAGATTAGGCCAGGAATCCTTCCCCTTGTTTTTCACATCGGTTTTACAGGTAATTTGACACAGTCTGGATTTGATTTACCGTGGTTTCTGAAATGGGTTAATTAGCTGTCACAGAAATCTCTGTGCCTGTGTTCTTTTACAGCTTTCTCAATGAATTCGGGGTTTGGTTTTCTGCATGCAATGTGTTTGTGCCGGTGTCCGCTTTGAATCTGATAGCTGTTCTTTTTAATCTGGTGGGTCTTTATATGTTCGCACTTGCCTCATTGTATTTTGCTTGAACTGAAACTGGGATACCAAATGAATTTATATTTAAAATCCTGGACAGAAAAAGCCAAGACTCTTGGGGTGGTAGACCCCATTTCCCTAGAGAATTCTGTGGATCCCATTCTCCACACGTTATCTCTTTCTTAGTTTAAATCCTTTTTCTCTCTAGTACTACTGATTTTCAATAATTTTAAGTATTGGATTTATATGGGTCTAAATGGAGTGACATGGTTAGTGAAGTGGTGTTATTGTTGTAGTGGTTTATTCAACTAGGATGCTGATGTCCTATTCATTTATGTTAGCCTTGGCTGTGAAATTGCATTTTCACTGTTTGTACTTGAGGCTATTGTGGAATTGTATAAGTTTTTATATAATTCACGCGGGAGTTTCATCTTTTGTTACCTCTTATTATGAAAGATGGTTGTTTCCAGGGACATCATAACTCTATTAAATTCATCATAGGTGGTCTTGTTCTAGACAGATGCCAGGGAACAAGTATACCGGCAACCAAGCGGTTGCTAGCACTCGATTGGAGAGGCTATTGAGAGAAAGAGAGCTTAGGAAAAGTAGCAAAGTTTCTCACTTTCCAAATGAATCTACTGATAACAATAGGGGAAACGAGCTCTCTGACCATGATTTTCGCCAAGGAGAAGCTGATAATGGAGGAGTTTCATATGTCGAACAGTACCTCGAAGGAGCTGCACTAGCATATAATGAAGGATGGGAGCGGCCTGATGGAAAGCCCACCAGACAACGACTCTTGGTTGTGGCAAACAGGTTACCTGTCTCTGCAGTAAGGAGAGGCGAGGAATCCTGGTCTC</genome_strand>
        <mrna_strand>TCTCCTATAACACATCCGCCACTCTATTTTACTCTATAAATACTCTATCTTTCAATTTTAACCACATTTCAAATTTCAGAATCTAATCCTTCATCGCTCCTCTTCAATTTCAG...................................................................................................................ACTAGCAGAAACACTTTCCGCACGGTGTTTCAGAATCTAAACAATCATCGATCTCTGCTTTAATTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTCTTGTTCTAGACAGATGCCAGGGAACAAGTATACCGGCAACCAAGCGGTTGCTAGCACTCGATTGGAGAGGCTATTGAGAGAAAGAGAGCTTAGGAAAAGTAGCAAAGTTTCTCACTTTCCAAATGAATCTACTGATAACAATAGGGGAAACGAGCTCTCTGACCATGATTTTCGCCAAGGAGAAGCTGATAATGGAGGAGTTTCATATGTCGAACAGTACCTCGAAGGAGCTGCACTAGCATATAATGAAGGATGGGAGCGGCCTGATGGAAAGCCCACCAGACAACGACTCTTGGTTGTGGCAAACAGGTTACCTGTCTCTGCAGTAAGGAGAGGCGAGGAATCCTGGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-0K1fxY/lycopersicum_combined_unigene_seqs" ref_id="SGN-U340216" ref_strand="+" ref_description="SGN-U340216        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | alpha, alpha-trehalose-phosphate synthase, UDP-forming, putative / trehalose-6-phosphate synthase, putative / UDP-glucose-glucosephosphate glucosyltransferase, putative, similar to trehalose-6-phosphate synthase SL-TPS/P (Selaginella lepidophylla) GI:4100325; contains Pfam profiles PF00982: Glycosyltransferase family 20, PF02358: Trehalose-phosphatase | chr1:29555667-29565684 REVERSE | Aliases: T30F21.9, T30F21_9(evalue: 2e-153, score=538) genbank/nr: gi|15218422|ref|NP_177979.1| alpha,alpha-trehalose-phosphate synthase, UDP-forming (trehalose-6-phosphate synthase/UDP-glucose-glucosephosphate glucosyltransferase), putative [Arabidopsis thaliana] gi|25347127|pir||D96814 trehalose-6-phosphate synthase [imported] - Arabidopsis thaliana gi|4836875|gb|AAD30578.1| trehalose-6-phosphate synthase [Arabidopsis thaliana](evalue: 2e-151, score=538)">
      <seq>cggtcttgttagtgctcttcttggtgtgaaggagtttgaggctagatggattggttgggcaggtgtgaatgtgccagatgaggctgggcagagggcacttactaaggcactggcagaaaagaggtgtatccctgtattcctggatgaagaaattgttcatcagtattacaacggttactgcaacaatatattgtggcctcttttccattatcttggacttccgcaagaagaccgccttgcgactaccagaagtttccagtctcagtttgctgcttataagaaagcaaatcaaatgtttgctgatgttgtgaatgaacattacgaagaaggtgatgtggtatggtgtcatgactaccatctcatgttcctgccaaaatgtctcaaggattacaacagccaaatgaaagtcggttggtttctacacacaccctttccatcctcggaaatacacaggacactgccgtctagatcagagctgctccgagcagttcttgctgctgacttggttggttttcatacctatgactatgcaaggcattttgttagtgcatgtactcgtatcctgggacttgaaggaacacctgaaggagtagaagatcaaggtagactgacccgcgttgctgcgtttcctattggtatagattcagaacgatttattcgagcacttgaagttactcaagttcaggaacacataaaagaactaaaagagagatttgctgggagaaaggttatgctaggagttgatcgccttgatatgattaaaggaattcccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0102J11-sylo5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0102J11.1" temp_strand="+" temp_description="C07HBa0102J11.1  AC210354.1 htgs_phase:3 submitted_to_sgn_as:C07HBa0102J11 upload_account_name:france">
        <position start="3681" stop="7388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3980" g_stop="4002" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4003" i_stop="4142" i_length="140">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4143" g_stop="4240" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="121" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4241" i_stop="4400" i_length="160">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4401" g_stop="4789" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="510" r_length="389" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4790" i_stop="5540" i_length="751">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5541" g_stop="5655" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="625" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5656" i_stop="5843" i_length="188">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5844" g_stop="5945" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="727" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5946" i_stop="7041" i_length="1096">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="7042" g_stop="7088" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="728" r_stop="774" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0102J11.1" gen_strand="+" ref_id="SGN-U340216" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0102J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U340216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3980" e_stop="4002"/>
          <exon e_start="4143" e_stop="4240"/>
          <exon e_start="4401" e_stop="4789"/>
          <exon e_start="5541" e_stop="5655"/>
          <exon e_start="5844" e_stop="5945"/>
          <exon e_start="7042" e_stop="7088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTCTTGTTAGTGCTCTTCTTGGTAAGCTAGCGTCTTCCCAGTCATTTCTGTTTTTACATTTGATCTTATTGTTTACCTTAACACTAATTATCTATTTCGCGTCTTTCATATTCATATTGTTGAAAAGAGTGCCTAATAGTTATGTTAATAATTTATTGAAGGTGTGAAGGAGTTTGAGGCTAGATGGATTGGTTGGGCAGGTGTGAATGTGCCAGATGAGGCTGGGCAGAGGGCACTTACTAAGGCACTGGCAGAAAAGGTTTAATACATCACTTTGCCACCATATTGCAGTTTACCACACTTCTCTTGCTTTTTTGAGTTTAGCAATTTGGAGATTGTTTTACATTTTTTTTCTCTCCAAGAAGATTGCTTTACCTATATTTTGCACTTGTTTACCCTTTTGATACTGTTCTTTGTAGAGGTGTATCCCTGTATTCCTGGATGAAGAAATTGTTCATCAGTATTACAACGGTTACTGCAACAATATATTGTGGCCTCTTTTCCATTATCTTGGACTTCCGCAAGAAGACCGCCTTGCGACTACCAGAAGTTTCCAGTCTCAGTTTGCTGCTTATAAGAAAGCAAATCAAATGTTTGCTGATGTTGTGAATGAACATTACGAAGAAGGTGATGTGGTATGGTGTCATGACTACCATCTCATGTTCCTGCCAAAATGTCTCAAGGATTACAACAGCCAAATGAAAGTCGGTTGGTTTCTACACACACCCTTTCCATCCTCGGAAATACACAGGACACTGCCGTCTAGATCAGAGCTGCTCCGAGCAGTTCTTGCTGCTGACTTGGTTGGGTAAACCCCTCTGAACAACTTATTCTCCTGCATAGGATCTAACAGCTAACTTTTCATTTTAGTTTAACCTTCATAATTTTGGAGCTACTGCCTGGAAATAGTTGGTGGGACCTAGACTATGAGATCCCCGACTGTCTGTGCTGAGAGTGAAAGTTGAAGTAGTGAAATGCAAGCATCTTAAATTTTAAATTTGTGGATTCTAATTGCGTTTTTTCATTACTAGATATAACACACTAGTGGTACCATTATAAAAAGAAATACTTACCATACTACTGGTTAGATCTCTGCCTCTCATTAAGATTACCTGGTGAGGCATGTCTTGAAAGATACGATTGGCAACCCCTAGTGTGATTGTGCAAGACACTCGATCAATAAAGTATAACTTAAAAAGCTGCATGTAAAAGATATATATTTGTCCTAGTTGACTTGTAAAGGAAAAGTGCTGGCTAAGTTGACTAACAAATTGTAGCATAAAAGGGGATGTGCTGGTTTCACTGGTAACTTTGTAACTGTCTGTATATCTACTATCCAATGATTATAGTATATTCTCATCTGTGGATTTCCATGTTACTGTGTTTCGGGTTGTATCACGCTGAATGTCCACTTCGTGGTATGATTTTTTGTCTCTTTACCTGTATGTAATGAAAGTCCTTTGGACTTAGACCTATATTTGCATTGTTTTATAATTTAATATCATTTTTTGTTACTCAAGCTAGGAAAGCTAATTATTTTTTATGGATTTAATTTGCAGTTTTCATACCTATGACTATGCAAGGCATTTTGTTAGTGCATGTACTCGTATCCTGGGACTTGAAGGAACACCTGAAGGAGTAGAAGATCAAGGTAGACTGACCCGCGTTGCTGCGGTATGTTTAAGTTAAACTTCATACACATTCACCCTGCAGTTCTTTTTCAAGAACTTCTGTAATCCTCATCTAAGCAATTTTATGTACTTAGCCTTGAGAAATATCTACTTGATTTATTTCAGAGTCATTTTAGAAATATCTACTTTGATTTCTTTCTGAGCCATTTTAAATTGTTCCTGTTCGTACAGTTTCCTATTGGTATAGATTCAGAACGATTTATTCGAGCACTTGAAGTTACTCAAGTTCAGGAACACATAAAAGAACTAAAAGAGAGATTTGCTGGGAGAAAGGTATGTCTATCCCGACTCTGGATCCTCTCTCCATCTCACCAAATTTTACTTTTTTGGCATGATATCATTTTCATGAAGTAAGAAATATTTTGTTGTTTTGTCTAATTGTAAGTGTTCGATTTTACATGCTGTGCATCACCTTGGGGGAAAACTTGCTTTTTGAGACTTTCTTCACCAATTTCATTGTCTACTTTTAATTGTGAAATCTTGGCCTTGAATTCAGTCGACGTTGTATTTTTTTCTACCTATAGTTCCTTAAGCCAGATTTGGTCAAGACCTGAATCCATCTTGGCCAATTTTACCATCATCTTATGAAAATTATACCTTATGAGTGATGTCGTTCAAACCAAAGTGGGTGATACATATATAATAGTATGATATTTTCAAATCCTACTGTGACCTGTCATCACTACATTTTCATGTGCTTTAATCAAACAAAATTTTTCCAGTTCACTACACACTAGAAAGGGTATCTTATATGTGTAATGATAAATACATGTTTGTGTTGTTTTAGATGGTATAGTTACCATTTACAGAGTCAGATGTTTCTTACTAAAACTTCTTCTATTATCCAACAGTAGATATCTAAGTGTTGAAATTGGACAAAAACAAAAGAGAGAGAGAGAGAGAGAGAAGGAAAAAGGAAGAAAAAGAGATTTGTTTGCATTTGTCAGGAGTAATTGCGTTCTGTTGTTTTGGTCTTCAAGCAGATGTGGCTTCTTGGAATTTCCATGTGGCTTTACTAGGTTTAGATGTATTTCCCCACTTTTCTGTTTATATATAAAGTCACAATGGCTTCTCTCATTAGAAGGTGAAAGTTTATTTACTTCTAATTCATGAACATTTCAGCTTTTTTGAAGACTAACTGGATTTCCTCACCTTTAGTTGCAAAATTGTCAGTCTAGTGTTCTTGCTAACCATTTCTTATGTTGTTTTATCACTTTTATGTACATCAAACTCATATCACTTTCTTCTGTTTTGCCCACTTGTATCTATTGCACAATTTTATGCATTGGCCATGCATTAGAGATATTTAATTGCATGTCCTAGAAACTTCCATACTTGCTTGGTTTTTGCTAAAGAAATTTAATCACAGGTTATGCTAGGAGTTGATCGCCTTGATATGATTAAAGGAATTCCCCA</genome_strand>
        <mrna_strand>CGGTCTTGTTAGTGCTCTTCTTG............................................................................................................................................GTGTGAAGGAGTTTGAGGCTAGATGGATTGGTTGGGCAGGTGTGAATGTGCCAGATGAGGCTGGGCAGAGGGCACTTACTAAGGCACTGGCAGAAAAG................................................................................................................................................................AGGTGTATCCCTGTATTCCTGGATGAAGAAATTGTTCATCAGTATTACAACGGTTACTGCAACAATATATTGTGGCCTCTTTTCCATTATCTTGGACTTCCGCAAGAAGACCGCCTTGCGACTACCAGAAGTTTCCAGTCTCAGTTTGCTGCTTATAAGAAAGCAAATCAAATGTTTGCTGATGTTGTGAATGAACATTACGAAGAAGGTGATGTGGTATGGTGTCATGACTACCATCTCATGTTCCTGCCAAAATGTCTCAAGGATTACAACAGCCAAATGAAAGTCGGTTGGTTTCTACACACACCCTTTCCATCCTCGGAAATACACAGGACACTGCCGTCTAGATCAGAGCTGCTCCGAGCAGTTCTTGCTGCTGACTTGGTTGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCATACCTATGACTATGCAAGGCATTTTGTTAGTGCATGTACTCGTATCCTGGGACTTGAAGGAACACCTGAAGGAGTAGAAGATCAAGGTAGACTGACCCGCGTTGCTGCG............................................................................................................................................................................................TTTCCTATTGGTATAGATTCAGAACGATTTATTCGAGCACTTGAAGTTACTCAAGTTCAGGAACACATAAAAGAACTAAAAGAGAGATTTGCTGGGAGAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGCTAGGAGTTGATCGCCTTGATATGATTAAAGGAATTCCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-0K1fxY/lycopersicum_combined_unigene_seqs" ref_id="SGN-U312361" ref_strand="+" ref_description="SGN-U312361        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | alpha, alpha-trehalose-phosphate synthase, UDP-forming, putative / trehalose-6-phosphate synthase, putative / UDP-glucose-glucosephosphate glucosyltransferase, putative, similar to trehalose-6-phosphate synthase SL-TPS/P (Selaginella lepidophylla) GI:4100325; contains Pfam profiles PF00982: Glycosyltransferase family 20, PF02358: Trehalose-phosphatase | chr1:29555667-29565684 REVERSE | Aliases: T30F21.9, T30F21_9(evalue: 6e-107, score=382) genbank/nr: gi|15218422|ref|NP_177979.1| alpha,alpha-trehalose-phosphate synthase, UDP-forming (trehalose-6-phosphate synthase/UDP-glucose-glucosephosphate glucosyltransferase), putative [Arabidopsis thaliana] gi|25347127|pir||D96814 trehalose-6-phosphate synthase [imported] - Arabidopsis thaliana gi|4836875|gb|AAD30578.1| trehalose-6-phosphate synthase [Arabidopsis thaliana](evalue: 4e-105, score=382)">
      <seq>aaggttatgctaggagttgatcgccttgatatgattaaaggaattccccaaaagatcctggcatttgagaagttccttgaagaaaatccgtactggcgtgataaagtggttttgcttcaaattgctgtgccaacaagaacagatgttcctgaataccaaaaacttaccagtcaagttcatgagattgttggacgcatcaatggtcggtttggaactttgactgcagtgcctattcatcatctggaccgttctcttgactttcatgcattatgtgcactgtatgctgtaactgatgtagcgttggttacctctttaagagatggcatgaacctcgtcagctatgaatttgtagcctgccaagagttgaaaaaatgggtccttattctcagcgaatttgctggtgctgcacaatcgttaggtgctggagcaattctggtgaattcatggaatataacagaggttgctgcttctattgggcaagctttaaatatgtcagctgaagaaagagaaaaacgccacaggcataactttctgtatgtgactactcatactgctcaagaatgggctgagacttttgtgagtgaactaaatgatactgttattgaagctcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0102J11-sylo5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0102J11.1" temp_strand="+" temp_description="C07HBa0102J11.1  AC210354.1 htgs_phase:3 submitted_to_sgn_as:C07HBa0102J11 upload_account_name:france">
        <position start="6740" stop="11289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6754" g_stop="6756" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6757" i_stop="7041" i_length="285">
            <donor d_prob="0.932" d_score="0.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7042" g_stop="7192" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="154" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7193" i_stop="8215" i_length="1023">
            <donor d_prob="0.771" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8216" g_stop="8304" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="243" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8305" i_stop="8394" i_length="90">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8395" g_stop="8443" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="292" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8444" i_stop="9503" i_length="1060">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9504" g_stop="9604" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="393" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9605" i_stop="10228" i_length="624">
            <donor d_prob="0.948" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="10229" g_stop="10416" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="581" r_length="188" r_score="0.979"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="10417" i_stop="10958" i_length="542">
            <donor d_prob="0.967" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="10959" g_stop="10989" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="612" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0102J11.1" gen_strand="+" ref_id="SGN-U312361" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0102J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U312361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6754" e_stop="6756"/>
          <exon e_start="7042" e_stop="7192"/>
          <exon e_start="8216" e_stop="8304"/>
          <exon e_start="8395" e_stop="8443"/>
          <exon e_start="9504" e_stop="9604"/>
          <exon e_start="10229" e_stop="10416"/>
          <exon e_start="10959" e_stop="10989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTGAAAGTTTATTTACTTCTAATTCATGAACATTTCAGCTTTTTTGAAGACTAACTGGATTTCCTCACCTTTAGTTGCAAAATTGTCAGTCTAGTGTTCTTGCTAACCATTTCTTATGTTGTTTTATCACTTTTATGTACATCAAACTCATATCACTTTCTTCTGTTTTGCCCACTTGTATCTATTGCACAATTTTATGCATTGGCCATGCATTAGAGATATTTAATTGCATGTCCTAGAAACTTCCATACTTGCTTGGTTTTTGCTAAAGAAATTTAATCACAGGTTATGCTAGGAGTTGATCGCCTTGATATGATTAAAGGAATTCCCCAAAAGATCCTGGCATTTGAGAAGTTCCTTGAAGAAAATCCGTACTGGCGTGATAAAGTGGTTTTGCTTCAAATTGCTGTGCCAACAAGAACAGATGTTCCTGAATGTATTTTCTCGAGCAGATCCACTCTGAGTTCTTCTTTATGCCTTAAGTTAATTTATATTTTCCACTTCTCCTATTATCATTACTACCTTTAGGGAAAGTTTGTTTTCCACTATACTGGTTCAGTACGGTCATCAGATATTTTGATGGCTGAGTGGAGGTCTTTGATTCATAAGTCTATTGGTCGAAGCCTAAAATTTTTTCTAAAGGAGCATCATATATTCCTAAACCAAACTGAAAATTTGAAAATCCTGTTTAATGATCCGGACTTAAGGGCCAGGAAAAGGACATACACCACCAGCAATCCATCATGAATCTATTTAGTGCAGAATATAATGCCCCCTTACTGTTCGATATATATGCTTAGGAACCATGTGATCGTCGTGATTAGTCCCAACTTATTACCAAAGACGCTGATAGATGCACAGTAGATATAACCGACTAAATTAGATTAATCTCTCTCCTTCTCCTTCTACTATTTTTTCTCCACTTTCCATCTCTCTGTCTTAAACCTAATGTATACTTGCCATATTGGTTAAGATATTTGAAGGCATTCATTGATGTTAATCTGTATGTTAAGAGAATCCTGCCTTATTTTACCATCCACACTAGCCTTTATGAAGTTTTGTGCTGGAACAGAAACATCGAATACAAAATATCAGTGGATCCTTTATCAATCAATCAATACAATTAGAAAATTGTATTAAATCATTGCTTGTTCCTCACTTATGGGATTACACTGGGTTGTTGTCGCTGTGTATGACGTTATACTTGGGGCTCAATGATGATCTGTAGTCTATAGAACTTGTTGAGAAAATTAGTTGAGTTGGTTATCTGCTTTTTCCTTTGGTTCACTTTATAACAAAATTGATGTTTGTAATGCTAATATATTGACAAAAACCAGGTTGGACCTTAAAACTGTCGAGTTTCAATGAGATTTACTTGGTCATAAATGCAGATGCTTGTCATACTATATGTTTGCTTAAGTATGATATTTTACTTGCTTTCACCTTAATATTTTTGCAGACCAAAAACTTACCAGTCAAGTTCATGAGATTGTTGGACGCATCAATGGTCGGTTTGGAACTTTGACTGCAGTGCCTATTCATCATCTGGTTAGTTTTTTTTTTTGTCATATTCATTGTGCTTGAATGCAGGACCATTCTCTTGACTGAAATATGGATAATATGGGTTTTTAAATGCAGGACCGTTCTCTTGACTTTCATGCATTATGTGCACTGTATGCTGTAACTGGTAATTCTTTTCATCTTGCACTTAATTCTGCGATTCTTATATAGTTCTGTTAGAAGCTTCCTTACTTCTGCGATTCTTGTATAGTTCTGTTAGAAGTTTCCATACACCATTCGTGCCCCCCCCCCCCCCCCCTTCTTCAGTTGTTTCTCCACACTAGGTGATTCTTCCCATCTATCCTAGCCTTGGTGGATAGAGTTACCTAGTACTTGTTGCTGGTGGGGGGGGGGGGATTAGTTGAGGTGGGCTAAAGCTAACCCGGACACCACAGTCATAAAAAAGATAGTGTTGTTTCTGCTCATCTATGTTTAGTCTTGCTATTTTCTTCTTCAGTTCTTTTGAAGGCACTACTAGTACATGCTTATCCTCTCACCTATGATCTCACCTGGTGTGAGTCCTATTGGAATTGACATAAACAATGAGAAGAGGTTAGCAATGTATGTTATAAATGGATGTCCTCCTAAATATCATAGTTCTCGAGAAAGGTTATATCTCTGCATAGTTTTTCTTAAGGTTGTTTCCCCTTCAGGTTTGCTAATTACTCACCAAAGCTTAAAAATCTTGTAGTTTCACTACTCTTCTGGACATAACAAATTAGTTTGGCAATGGAATAGATTGATTGAGGCCTCTGTATGTTCTCAAATAAATCTGCATCATTTGGACTTTCTAGAAATTGGATATAAGCTTGTAAATCTGGAGTTGGTCCATAACTTTATTCGCTAGAGAATGCATAAGTTGTGCTCCAGGATCTGAATGAGGGATGATTGGATAAGTATGTTTTTGACACATTCTGAAAACATATACATGCCAAAGTCCATATTTTCCTTATTGTTATCTTGAAGAAAACGAAAGGTTTTACTAATGCTACTTTTTCCATCATATTTGTTATATTCCTATTTGTTCAAGATTATAGAATGGTGAAATAATAATATTGACATGATGATAATTTAAATATATATATATATTAATAATTCAGTTGTTTTTCCTCATTAGCTAATTTCTTTTGGTAGTTGCATGTCAGTTCCTATTTTATTTGATAAATTGGCAATGTTTTGTTCATCAGATGTAGCGTTGGTTACCTCTTTAAGAGATGGCATGAACCTCGTCAGCTATGAATTTGTAGCCTGCCAAGAGTTGAAAAAAGGGGTCCTTATTCTCAGCGAAGTAATAATCATATATCTTATTGCAATGCTATTTCCTCTCATGTCATAATTACTATTGTTTTTTCTTTAAAAATTATTTTATGTTTTTCGGCATTGTGAAGCAATAAAATGAAAAATAAAATTAGACATAACCTTATGGATGTTTTCGTGCTTATTTGCTAATTAATTTTGACAAAGCTAACCGTTTATAGAAGAAAAAAAACAAGATTATAGTTTCCAATAAAAATATTTGACACAATCCTTTTTCCAAATGAAAAGAAAAGTATTTTGCAATAAAAAGATTTTGACAAAGCTAACCATACCTTCATTCTTCTTCCTACTTCTTCTTTTTTTCCCCTCTGTTTATGACATTTTTATATACTATTTTAAATTTAATTTTTTTACAACAATTGTTTTTATATGTTCATGAAAATAAATAGTGAATTAATTCTTAAAATGATAACTTTATAGCTTTGCATTTAAAAAAGCAAATTTCGAAAAATTATGCATGAATTTTATTACTAAAAATCTTATGATATTTTATCAAGTTTTTGTTTTAGGTCACTGATTGTATTGTGCCTCCTCTGTTTATAGTTTGCTGGTGCTGCACAAGTCACTGATTGTATTGTGCCTCCTCTGTTTATAGTTTGCTGGTGCTGCACAATCGTTAGGTGCTGGAGCAATTCTGGTGAATCCATGGAATATAACAGAGGTTGCTGCTTCGATTGGGCAAGCTTTAAATATGTCAGCTGAAGAAAGAGAAAAACGCCACAGGCATAACTTTCTGCATGTGACTACGCATACTGCTCAAGAATGGGCTGAGACTTTTGTGAGGTAAGAAGACATTAAGAGAGTAAAGCTAACACAGAATTCACATTATCACTGCCACTTATGAGAGAACCTCTTGAATTATTCTTCGGACTCCTGTAAAAACACTTTGTGGCGGCGAATGAGTAATAATAGTATAATGCCATGCAATGAGACCCCACTGTTTTACTTTGGCCCCAGCTTATTCCTCAGGATTTATATATTTGTATTATTGGAGTCATTAAAATTCATCTACAGCCAGCCTGTTTATAGCTAGGGATCTTATGTCAGAATGTGCAAACTCTCATTGAGGGTACGCCTACCTTGAGAATGATTAGAGGCATCATCTTATATAGTTTGCATATCTACCTTAGTCATTTCTGTGTTTAGTTTTACTGCTTCTCTTGATATTAAACAACACTCTTTTTATCAACTGTGTTAATCACTCATCAGCACAGATACTATAAGCATAATTCAACAATTGTCATGTTAACTGAGATTATACTTGAAGCTTTTAAAGGGGCTTCATTTTGATAAACTATCTTAGTAACTATTCCTCTTCTTTGCAGTGAACTAAATGATACTGTTATTGAAGCTCAA</genome_strand>
        <mrna_strand>AAG.............................................................................................................................................................................................................................................................................................GTTATGCTAGGAGTTGATCGCCTTGATATGATTAAAGGAATTCCCCAAAAGATCCTGGCATTTGAGAAGTTCCTTGAAGAAAATCCGTACTGGCGTGATAAAGTGGTTTTGCTTCAAATTGCTGTGCCAACAAGAACAGATGTTCCTGAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAAAAACTTACCAGTCAAGTTCATGAGATTGTTGGACGCATCAATGGTCGGTTTGGAACTTTGACTGCAGTGCCTATTCATCATCTG..........................................................................................GACCGTTCTCTTGACTTTCATGCATTATGTGCACTGTATGCTGTAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAGCGTTGGTTACCTCTTTAAGAGATGGCATGAACCTCGTCAGCTATGAATTTGTAGCCTGCCAAGAGTTGAAAAAATGGGTCCTTATTCTCAGCGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCTGGTGCTGCACAATCGTTAGGTGCTGGAGCAATTCTGGTGAATTCATGGAATATAACAGAGGTTGCTGCTTCTATTGGGCAAGCTTTAAATATGTCAGCTGAAGAAAGAGAAAAACGCCACAGGCATAACTTTCTGTATGTGACTACTCATACTGCTCAAGAATGGGCTGAGACTTTTGTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACTAAATGATACTGTTATTGAAGCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-0K1fxY/lycopersicum_combined_unigene_seqs" ref_id="SGN-U312360" ref_strand="+" ref_description="SGN-U312360        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: | Symbol: None | alpha, alpha-trehalose-phosphate synthase, UDP-forming, putative / trehalose-6-phosphate synthase, putative / UDP-glucose-glucosephosphate glucosyltransferase, putative, similar to trehalose-6-phosphate synthase SL-TPS/P (Selaginella lepidophylla) GI:4100325; contains Pfam profiles PF00982: Glycosyltransferase family 20, PF02358: Trehalose-phosphatase | chr1:29555667-29565684 REVERSE | Aliases: T30F21.9, T30F21_9(evalue: 0, score=691) genbank/nr: gi|15218422|ref|NP_177979.1| alpha,alpha-trehalose-phosphate synthase, UDP-forming (trehalose-6-phosphate synthase/UDP-glucose-glucosephosphate glucosyltransferase), putative [Arabidopsis thaliana] gi|25347127|pir||D96814 trehalose-6-phosphate synthase [imported] - Arabidopsis thaliana gi|4836875|gb|AAD30578.1| trehalose-6-phosphate synthase [Arabidopsis thaliana](evalue: 0, score=691)">
      <seq>tctcatctgggtctgtcttgtttttgatcattcttgagtttttctcttgtgggtattccttgattttgctcaaaaccgtcaaattttgaatcttcagctatgaatttgtagcctgccaagagttgaaaaaaggggtccttattctcagcgaatttgctggtgctgcacaatcgttaggtgctggagcaattctggtgaatccatggaatataacagaggttgctgcttcgattgggcaagctttaaatatgtcagctgaagaaagagaaaaacgccacaggcataactttctgcatgtgactacgcatactgctcaagaatgggctgagacttttgtgagtgaactaaatgatactgttattgaagctcaacagaggataagaaaagttccgccccggcttaacatcagtgatgcaattgagcgctattcgttttccaataatcgactactaatattgggtttcaattctacactgacagaatcggtggatacccctggaagaagaggtggagatcaaatcaaagaaatggaactgaaattgcatcctgagttgaaagaatcattgctcgcgatttgtaacgacccaaagacaacagtcgttgtcctcagtggaagtgatagaaacgtcttagatgataacttcagcgagtacaacatgtggttagcagcagaaaatggaatgtttttacgatctacaaacggtgtatggatgacaactatgccagaacacctaaacatggactgggttgatagtgttaagcacgttttcgagtacttcactgaaaggacaccgagatctcactttgaacaacgtgaaacttcacttgtttggaattacaagtatgcagatgttgaatttggaagattgcaagctagagacatgcttcagcatctctggacaggtccaatatcaaatgcatctgttgatgttgtacaaggactccgctccgttgaggttcgagcagttggtgttacaaagggagcagcaatagatcgtatactgggggagatcgtacacagtaaagccatcgcaacaccaattgattacgttttatgcatagggcattttctggggaaggatgaggatgtatatacattttttgagccagagcttccttctgactgcatcggtatgccaagaagtaaggtcagtgatgcaccaaaggtgcccggggaaaggcgatcagttccaaaactcccttctagtcgaactagctcaaagtcatctcagaataggaacagaccagtttcaaactcggataagaagacttccaatgggcgacggccctcacctgaaaatgtgtcatggaatgtgctggatctgaagaaggagaattacttctcttgtgcagttggaaggactcgtacaaacgctcggtatctgctcagtacgccagacgacgttgttgcttttctaagggaactagctgaagcacctatttcaaatgggacatcatgaaaaagaaggatagatgatgcctggttgcatcaagtgatgaatgatcagtaccaagttcttggttgagggagatttgtatgggatgatattgaataaacgttttatacctttactttggatatagatgtttgcattcaaaagtttacaaagtagagagaataaccttcatgctagcaagtacatccgtgccaattattttgtctagtcttttactttggcacgaaattttaagaaaattaagaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0102J11-sylo5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0102J11.1" temp_strand="+" temp_description="C07HBa0102J11.1  AC210354.1 htgs_phase:3 submitted_to_sgn_as:C07HBa0102J11 upload_account_name:france">
        <position start="9243" stop="13806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9542" g_stop="9604" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="152" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9605" i_stop="10228" i_length="624">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10229" g_stop="10416" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="340" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10417" i_stop="10958" i_length="542">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10959" g_stop="11076" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="458" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11077" i_stop="11620" i_length="544">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11621" g_stop="11800" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="638" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11801" i_stop="11879" i_length="79">
            <donor d_prob="0.220" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11880" g_stop="12002" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="761" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12003" i_stop="12075" i_length="73">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12076" g_stop="12163" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="762" r_stop="849" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="12164" i_stop="12320" i_length="157">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="12321" g_stop="12451" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="850" r_stop="980" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="12452" i_stop="12527" i_length="76">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="12528" g_stop="12626" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="981" r_stop="1079" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="12627" i_stop="12881" i_length="255">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="12882" g_stop="13506" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="1080" r_stop="1704" r_length="625" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1705" polyA_stop="1717"/>
      <MATCH_line gen_id="C07HBa0102J11.1" gen_strand="+" ref_id="SGN-U312360" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1615</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0102J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U312360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9542" e_stop="9604"/>
          <exon e_start="10229" e_stop="10416"/>
          <exon e_start="10959" e_stop="11076"/>
          <exon e_start="11621" e_stop="11800"/>
          <exon e_start="11880" e_stop="12002"/>
          <exon e_start="12076" e_stop="12163"/>
          <exon e_start="12321" e_stop="12451"/>
          <exon e_start="12528" e_stop="12626"/>
          <exon e_start="12882" e_stop="13506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGTCAGCTATGAATTTGTAGCCTGCCAAGAGTTGAAAAAAGGGGTCCTTATTCTCAGCGAAGTAATAATCATATATCTTATTGCAATGCTATTTCCTCTCATGTCATAATTACTATTGTTTTTTCTTTAAAAATTATTTTATGTTTTTCGGCATTGTGAAGCAATAAAATGAAAAATAAAATTAGACATAACCTTATGGATGTTTTCGTGCTTATTTGCTAATTAATTTTGACAAAGCTAACCGTTTATAGAAGAAAAAAAACAAGATTATAGTTTCCAATAAAAATATTTGACACAATCCTTTTTCCAAATGAAAAGAAAAGTATTTTGCAATAAAAAGATTTTGACAAAGCTAACCATACCTTCATTCTTCTTCCTACTTCTTCTTTTTTTCCCCTCTGTTTATGACATTTTTATATACTATTTTAAATTTAATTTTTTTACAACAATTGTTTTTATATGTTCATGAAAATAAATAGTGAATTAATTCTTAAAATGATAACTTTATAGCTTTGCATTTAAAAAAGCAAATTTCGAAAAATTATGCATGAATTTTATTACTAAAAATCTTATGATATTTTATCAAGTTTTTGTTTTAGGTCACTGATTGTATTGTGCCTCCTCTGTTTATAGTTTGCTGGTGCTGCACAAGTCACTGATTGTATTGTGCCTCCTCTGTTTATAGTTTGCTGGTGCTGCACAATCGTTAGGTGCTGGAGCAATTCTGGTGAATCCATGGAATATAACAGAGGTTGCTGCTTCGATTGGGCAAGCTTTAAATATGTCAGCTGAAGAAAGAGAAAAACGCCACAGGCATAACTTTCTGCATGTGACTACGCATACTGCTCAAGAATGGGCTGAGACTTTTGTGAGGTAAGAAGACATTAAGAGAGTAAAGCTAACACAGAATTCACATTATCACTGCCACTTATGAGAGAACCTCTTGAATTATTCTTCGGACTCCTGTAAAAACACTTTGTGGCGGCGAATGAGTAATAATAGTATAATGCCATGCAATGAGACCCCACTGTTTTACTTTGGCCCCAGCTTATTCCTCAGGATTTATATATTTGTATTATTGGAGTCATTAAAATTCATCTACAGCCAGCCTGTTTATAGCTAGGGATCTTATGTCAGAATGTGCAAACTCTCATTGAGGGTACGCCTACCTTGAGAATGATTAGAGGCATCATCTTATATAGTTTGCATATCTACCTTAGTCATTTCTGTGTTTAGTTTTACTGCTTCTCTTGATATTAAACAACACTCTTTTTATCAACTGTGTTAATCACTCATCAGCACAGATACTATAAGCATAATTCAACAATTGTCATGTTAACTGAGATTATACTTGAAGCTTTTAAAGGGGCTTCATTTTGATAAACTATCTTAGTAACTATTCCTCTTCTTTGCAGTGAACTAAATGATACTGTTATTGAAGCTCAACAGAGGATAAGAAAAGTTCCGCCCCGGCTTAACATCAGTGATGCAATTGAGCGCTATTCGTTTTCCAATAATCGACTACTAATATTGGTATAACTCGCTCCTTCTTTAAAAATATTTGCCTGAAACTCTTACTTATACAGAAGCTTACAGTTGACTTCTTTACTTCCTTAATGACTCTGACATTGATGATAAATTTTTGAGCGTTGAAGAGTTCATATATTGCAGAAAGTCTATATATATGGCTTTAGATGTTGAATAACGTTTGTGGAAAAATCCTATGCAAATTTGAATAGCATTCCAACTATGTGTTTGAATTTGACATGTGCGCTTGAGTCCAAGTTGGTGCTGCTTTTGTTTGCATATTTGAGCAAAGGGATCTAGGACGCTATCATGATTAGGGGCCTTGATGATCTGGGTAGACATTTGTGTTAAGGGGTTATACATATGGTGAAGAGTGGATGCAGCCTCCCCTCCCCCATTGCCTTTCTGAGGGAACTTAAGCTCTAAGCCAAATTTTGTGCGATATTATATTCTTTTCGAATTCAATTTTCTTTTCTTTGATCAGTATATGCAGCAACTAGCTAAGTTAATGACAATTTCTTGATTTCATTGTGGTGGTCCTCAAAAACAGGGTTTCAATTCTACACTGACAGAATCGGTGGATACCCCTGGAAGAAGAGGTGGAGATCAAATCAAAGAAATGGAACTGAAATTGCATCCTGAGTTGAAAGAATCATTGCTCGCGATTTGTAACGACCCAAAGACAACAGTCGTTGTCCTCAGTGGAAGTGATAGAAACGTCTTAGATGATGTATTGCCTTACAACTAGCAATATTTCAATTCCCTCAACTGTAGCGACGTTTCCCCATGTGAAATTTGTACTTTTGCAGAACTTCAGCGAGTACAACATGTGGTTAGCAGCAGAAAATGGAATGTTTTTACGATCTACAAACGGTGTATGGATGACAACTATGCCAGAACACCTAAACATGGACTGGGTTGATAGTGTTAAGGTATGATCATGTGTAGCTATGTTCTGGTAGTGCATCTTTCAGCTCTAACTTCTCTTGTCTTGACAATATTCAGCACGTTTTCGAGTACTTCACTGAAAGGACACCGAGATCTCACTTTGAACAACGTGAAACTTCACTTGTTTGGAATTACAAGTATGCAGGTGATCTTACTTTCATCATCCATTTTCGAGATTTTTCAGTCATGCATTTCTTGTTTGTAGCTATTCAAAGTTTAGTCTTGCCTTCAATTCTCTTTTTCCTTTTTTCCTTTTTCTTTAAACATTTCTTCCTTTTGGTGGGGGTTCTTCCATGTCCTAGATGTTGAATTTGGAAGATTGCAAGCTAGAGACATGCTTCAGCATCTCTGGACAGGTCCAATATCAAATGCATCTGTTGATGTTGTACAAGGACTCCGCTCCGTTGAGGTTCGAGCAGTTGGTGTTACAAAGGTGACAACGTTGTTTCTTATGTAACAATTCGTTTTCCCTATCCTGTACACTCATGTGTATATACACACACATGCAGGGAGCAGCAATAGATCGTATACTGGGGGAGATCGTACACAGTAAAGCCATCGCAACACCAATTGATTACGTTTTATGCATAGGGCATTTTCTGGGGAAGGTAAATTCTTTGAAGCCTTCAAAATGTCGTCACTTCAAATTAGTATTGCTATTGCTGTGAGCTTTGACCTTTATAATTCAGAGTAACCCCTGTCTGTTTAACTAGTTCCAGATTTTGATAAAGTAATCCGACTTCATCTTTCAAAAATTAAGTCGGATAGGTTGATCATTTGCATCTGTATCTTGAATTTTGATGCTGTTGTAAGCACTGTCCATTATATTGCTACACTTACGTCTGTTGCCTTTGTAAATATAGGATGAGGATGTATATACATTTTTTGAGCCAGAGCTTCCTTCTGACTGCATCGGTATGCCAAGAAGTAAGGTCAGTGATGCACCAAAGGTGCCCGGGGAAAGGCGATCAGTTCCAAAACTCCCTTCTAGTCGAACTAGCTCAAAGTCATCTCAGAATAGGAACAGACCAGTTTCAAACTCGGATAAGAAGACTTCCAATGGGCGACGGCCCTCACCTGAAAATGTGTCATGGAATGTGCTGGATCTGAAGAAGGAGAATTACTTCTCTTGTGCAGTTGGAAGGACTCGTACAAACGCTCGGTATCTGCTCAGTACGCCAGACGACGTTGTTGCTTTTCTAAGGGAACTAGCTGAAGCACCTATTTCAAATGGGACATCATGAAAAAGAAGGATAGATGATGCCTGGTTGCATCAAGTGATGAATGATCAGTACCAAGTTCTTGGTTGAGGGAGATTTGTATGGGATGATATTGAATAAACGTTTTATACCTTTACTTTGGATATAGATGTTTGCATTCAAAAGTTTACAAAGTAGAGAGAATAACCTTCATGCTAGCTAGTACATCCGTGCCAATTATTTTGTCTAGTCTTTTACTTTGGCACGAAATTTTAAGAAAATTAAGAAA</genome_strand>
        <mrna_strand>ATCTTCAGCTATGAATTTGTAGCCTGCCAAGAGTTGAAAAAAGGGGTCCTTATTCTCAGCGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCTGGTGCTGCACAATCGTTAGGTGCTGGAGCAATTCTGGTGAATCCATGGAATATAACAGAGGTTGCTGCTTCGATTGGGCAAGCTTTAAATATGTCAGCTGAAGAAAGAGAAAAACGCCACAGGCATAACTTTCTGCATGTGACTACGCATACTGCTCAAGAATGGGCTGAGACTTTTGTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACTAAATGATACTGTTATTGAAGCTCAACAGAGGATAAGAAAAGTTCCGCCCCGGCTTAACATCAGTGATGCAATTGAGCGCTATTCGTTTTCCAATAATCGACTACTAATATTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCAATTCTACACTGACAGAATCGGTGGATACCCCTGGAAGAAGAGGTGGAGATCAAATCAAAGAAATGGAACTGAAATTGCATCCTGAGTTGAAAGAATCATTGCTCGCGATTTGTAACGACCCAAAGACAACAGTCGTTGTCCTCAGTGGAAGTGATAGAAACGTCTTAGATGAT...............................................................................AACTTCAGCGAGTACAACATGTGGTTAGCAGCAGAAAATGGAATGTTTTTACGATCTACAAACGGTGTATGGATGACAACTATGCCAGAACACCTAAACATGGACTGGGTTGATAGTGTTAAG.........................................................................CACGTTTTCGAGTACTTCACTGAAAGGACACCGAGATCTCACTTTGAACAACGTGAAACTTCACTTGTTTGGAATTACAAGTATGCAG.............................................................................................................................................................ATGTTGAATTTGGAAGATTGCAAGCTAGAGACATGCTTCAGCATCTCTGGACAGGTCCAATATCAAATGCATCTGTTGATGTTGTACAAGGACTCCGCTCCGTTGAGGTTCGAGCAGTTGGTGTTACAAAG............................................................................GGAGCAGCAATAGATCGTATACTGGGGGAGATCGTACACAGTAAAGCCATCGCAACACCAATTGATTACGTTTTATGCATAGGGCATTTTCTGGGGAAG...............................................................................................................................................................................................................................................................GATGAGGATGTATATACATTTTTTGAGCCAGAGCTTCCTTCTGACTGCATCGGTATGCCAAGAAGTAAGGTCAGTGATGCACCAAAGGTGCCCGGGGAAAGGCGATCAGTTCCAAAACTCCCTTCTAGTCGAACTAGCTCAAAGTCATCTCAGAATAGGAACAGACCAGTTTCAAACTCGGATAAGAAGACTTCCAATGGGCGACGGCCCTCACCTGAAAATGTGTCATGGAATGTGCTGGATCTGAAGAAGGAGAATTACTTCTCTTGTGCAGTTGGAAGGACTCGTACAAACGCTCGGTATCTGCTCAGTACGCCAGACGACGTTGTTGCTTTTCTAAGGGAACTAGCTGAAGCACCTATTTCAAATGGGACATCATGAAAAAGAAGGATAGATGATGCCTGGTTGCATCAAGTGATGAATGATCAGTACCAAGTTCTTGGTTGAGGGAGATTTGTATGGGATGATATTGAATAAACGTTTTATACCTTTACTTTGGATATAGATGTTTGCATTCAAAAGTTTACAAAGTAGAGAGAATAACCTTCATGCTAGCAAGTACATCCGTGCCAATTATTTTGTCTAGTCTTTTACTTTGGCACGAAATTTTAAGAAAATTAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-0K1fxY/lycopersicum_combined_unigene_seqs" ref_id="SGN-U341091" ref_strand="+" ref_description="SGN-U341091        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: RHM1 | NAD-dependent epimerase/dehydratase family protein, similar to dTDP-glucose 4,6-dehydratase from Aneurinibacillus thermoaerophilus GI:16357461, RmlB from Leptospira borgpetersenii GI:4234803; contains Pfam profile PF01370 NAD dependent epimerase/dehydratase family | chr1:29554589-29557659 FORWARD | Aliases: T30F21.10, T30F21_10, RHM1(evalue: 3e-52, score=202) genbank/nr: rhamnose(evalue: 1e-50, score=203)">
      <seq>cgcatttagtggtcaacattcccaacagcatgacgattttggatgagcttcttccaatttcaatcgagatggcaaagcgtaatctcacaggcatatggaatttcacaaaccctggtgttgtgagccataacgagatcttggagatgtacaagaaatacataaacccagaatttaaatggtccaacttcacactggaagagcaggctaaggtaattgttgcacctcgcagtaacaatgaaatggacgcgtccaagttgaaaaaggagttccctgagttgttgtctatcaaagaatcattgatcaaaaatgtgtttgaaccaaatagaaaaacttctgcatgagaagcccatcaggatgtggagagcagacttctggtttggatcaatatgctacttgactttctactctagtttagtcattattagccatcattttaaaatatttaggttcttactggtgtctagaattcctacacttggtctatgttgtcagtttatttatgagtttaatgtgctataaggtggtttgcgtaggagttaccattcatcttttatcagctcgggtcgatttgttggatcttaatatatatgaaattatgattaacaaaaaaaaaacacacaacaaaaaacaacaatcacaaaaataaaattacttcggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0102J11-sylo5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0102J11.1" temp_strand="-" temp_description="C07HBa0102J11.1  AC210354.1 htgs_phase:3 submitted_to_sgn_as:C07HBa0102J11 upload_account_name:france">
        <position start="14744" stop="13547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14447" g_stop="13846" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="602" r_length="602" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0102J11.1" gen_strand="-" ref_id="SGN-U341091" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0102J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U341091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14447" e_stop="13846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATAAAGTGGTCAACATTCCCAACAGCATGACGATTTTGGATGAGCTTCTTCCAATTTCAATCGAGATGGCAAAGCGTAATCTCACAGGCATATGGAATTTCACAAACCCTGGTGTTGTGAGCCATAACGAGATCTTGGAGATGTACAAGAAATACATAAACCCAGAATTTAAATGGTCCAACTTCACACTGGAAGAGCAGGCTAAGGTAATTGTTGCACCTCGCAGTAACAATGAAATGGACGCGTCCAAGTTGAAAAAGGAGTTCCCTGAGTTGTTGTCTATCAAAGAATCATTGATCAAAAATGTGTTTGAACCAAATAGAAAAACTTCTGCATGAGAAGCCCATCAGGATGTGGAGAGCAGACTTCTGGTTTGGATCAATATGCTACTTGACTTTCTACTCTAGTTTAGTCATTATTAGCCATCATTTTAAAATATTTAGGTTCTTACTGGTGTCTAGAATTCCTACACTTGGTCTATGTTGTCAGTTTATTTATGAGTTTAATGTGCTATAAGGTGGTTTGCGTAGGAGTTACCATTCATCTTTTATCAGCTCGGGTCGATTTGTTGGATCTTAATATATATGAAATTATGATTT</genome_strand>
        <mrna_strand>CGCATTTAGTGGTCAACATTCCCAACAGCATGACGATTTTGGATGAGCTTCTTCCAATTTCAATCGAGATGGCAAAGCGTAATCTCACAGGCATATGGAATTTCACAAACCCTGGTGTTGTGAGCCATAACGAGATCTTGGAGATGTACAAGAAATACATAAACCCAGAATTTAAATGGTCCAACTTCACACTGGAAGAGCAGGCTAAGGTAATTGTTGCACCTCGCAGTAACAATGAAATGGACGCGTCCAAGTTGAAAAAGGAGTTCCCTGAGTTGTTGTCTATCAAAGAATCATTGATCAAAAATGTGTTTGAACCAAATAGAAAAACTTCTGCATGAGAAGCCCATCAGGATGTGGAGAGCAGACTTCTGGTTTGGATCAATATGCTACTTGACTTTCTACTCTAGTTTAGTCATTATTAGCCATCATTTTAAAATATTTAGGTTCTTACTGGTGTCTAGAATTCCTACACTTGGTCTATGTTGTCAGTTTATTTATGAGTTTAATGTGCTATAAGGTGGTTTGCGTAGGAGTTACCATTCATCTTTTATCAGCTCGGGTCGATTTGTTGGATCTTAATATATATGAAATTATGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-0K1fxY/lycopersicum_combined_unigene_seqs" ref_id="SGN-U341222" ref_strand="+" ref_description="SGN-U341222        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | similar to NAD-dependent epimerase/dehydratase family protein [Arabidopsis thaliana] (TAIR:At3g14790.1); similar to NAD-dependent epimerase/dehydratase family protein [Arabidopsis thaliana] (TAIR:At1g53500.1); similar to dTDP-D-glucose 4,6-dehydratase, putative [Entamoeba histolytica HM-1:IMSS] (GB:EAL47103.1); contains InterPro domain NAD-dependent epimerase/dehydratase (InterPro:IPR001509) | chr1:29554543-29557693 FORWARD | Aliases: None(evalue: 5e-88, score=302) genbank/nr: gi|15218420|ref|NP_177978.1| NAD-dependent epimerase/dehydratase family [Arabidopsis thaliana] gi|25406555|pir||C96814 hypothetical protein T30F21.10 [imported] - Arabidopsis thaliana gi|4836876|gb|AAD30579.1| Similar to dTDP-D-glucose 4,6-dehydratase [Arabidopsis thaliana] gi|14596091|gb|AAK68773.1| Similar to dTDP-D-glucose 4,6-dehydratase [Arabidopsis thaliana] gi|20148285|gb|AAM10033.1| similar to dTDP-D-glucose 4,6-dehydratase [Arabidopsis thaliana](evalue: 4e-86, score=302)">
      <seq>agcctctttcgattcacggagatggttcaaatgttagaagttattctctattgtgaggacgttgctgaagctttcgaagttgttcttcaccgaggtgatgttggtcatgtttataacatcgggactaacaaagagaggcgagtgattgatgttgccaaagatatatccaatctttttaacaaggatccagacacaagcattcagtttgtggaaaacaggcccttcaatgaccagaggtatttcttagatgatcagaagttgaagaacctcggttggtcagagaagaccacctgggaagagggtctgaaaaaaaccatggagtggtatgtcaacaatcctgattggtggggagatgtctcangggcattgcttccccatcctacaatgctgatgatgcctggtggggtagagagaaattcggatggagctgaaaaaggtgattctggatcatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0102J11-sylo5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0102J11.1" temp_strand="-" temp_description="C07HBa0102J11.1  AC210354.1 htgs_phase:3 submitted_to_sgn_as:C07HBa0102J11 upload_account_name:france">
        <position start="15883" stop="14831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15583" g_stop="15131" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0102J11.1" gen_strand="-" ref_id="SGN-U341222" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0102J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U341222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15583" e_stop="15131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCTCTTCCGATTCACGGAGATGGTTCAAATGTTAGAAGTTA-TCTCTATTGTGAGGACGTTGCTGAGGCTTTCGAAGTTGTTCTTCACCGAGGTGATGTTGGTCATGTTTATAACATCGGGACTAAGAAAGAGAGGCGAGTGATTGATGTTGCCAAAGATATATCCAATCTTTTTAACAAGGATCCAGACACAAGCATTCAGTTTGTGGAAAACAGGCCCTTCAATGACCAGAGGTATTTCCTAGATGATCAGAAGTTGAAGAACCTGGGTTGGTCCGAGAAGACCACCTGGGAAGAGGGTCTGAAAAAAACCATGGAGTGGTATGTCAATAATCCTGATTGGTGGGGAGATGTCTCTGGGGCATTGCTTCCCCATCCTAGAATGCTGATGATGCCTGGTGGGGTAGAGAGAAATTCGGATGGAGCTGAAAAAGATGATTCTGGATCATCTG</genome_strand>
        <mrna_strand>AGCCTCTTTCGATTCACGGAGATGGTTCAAATGTTAGAAGTTATTCTCTATTGTGAGGACGTTGCTGAAGCTTTCGAAGTTGTTCTTCACCGAGGTGATGTTGGTCATGTTTATAACATCGGGACTAACAAAGAGAGGCGAGTGATTGATGTTGCCAAAGATATATCCAATCTTTTTAACAAGGATCCAGACACAAGCATTCAGTTTGTGGAAAACAGGCCCTTCAATGACCAGAGGTATTTCTTAGATGATCAGAAGTTGAAGAACCTCGGTTGGTCAGAGAAGACCACCTGGGAAGAGGGTCTGAAAAAAACCATGGAGTGGTATGTCAACAATCCTGATTGGTGGGGAGATGTCTCANGGGCATTGCTTCCCCATCCTACAATGCTGATGATGCCTGGTGGGGTAGAGAGAAATTCGGATGGAGCTGAAAAAGGTGATTCTGGATCATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-0K1fxY/lycopersicum_combined_unigene_seqs" ref_id="SGN-U331866" ref_strand="+" ref_description="SGN-U331866        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | nodulin MtN3 family protein, similar to MtN3 GI:1619602 (root nodule development) from (Medicago truncatula) | chr3:4957363-4959709 REVERSE | Aliases: T21E2.6(evalue: 2e-76, score=282) genbank/nr: gi|18400517|ref|NP_566493.1| nodulin MtN3 family protein [Arabidopsis thaliana] gi|11994587|dbj|BAB02642.1| MtN3-like protein [Arabidopsis thaliana] gi|15809923|gb|AAL06889.1| AT3g14770/T21E2_2 [Arabidopsis thaliana] gi|17978879|gb|AAL47411.1| AT3g14770/T21E2_2 [Arabidopsis thaliana](evalue: 1e-74, score=282)">
      <seq>ctattctaaaatttgatggtttctttggcttcgtctcaagttcttgcaatctgtaaagatgcagctggaatcgccgggaatatctttgcttttggattgtttttgtctccaatgcctacattcatgagaataatgaggaatcaatcaactgaacagttctcagggttgccgtacatctatggtctattgaactgcttaatttgtgcctggtatggcacccctctcgtatctcccgacaatttgttggttacatcagttaattcacttggtgctgtttttcaacttgcctacattgtactttacgtaacgtatacagagaaagagaaaaagttcaggatgtttggatggatactcacagtctttggcctatttgttattattgtacttggaagcttgtttatacttgatctggaactccgacgcatcatcattggctccctgagttgtgcttccttgatatcaatgtttgcctccccactgttaattattaatctggtgatcaggaccaggagtgttgaattcatgccgttttgtctgtccctctccaccttcctaatgagtgcctctttccttttgtatggaattttcagttctgatccctttatatatgtaccaaatggcattggaacacttttaggagttacacaattgcttttatttgcacattacagaaattcttcaagagaggactctgccgaaggccttatagtatcttattcatgaactagaattctaagaaagtagtgtcttttgtgcatgaaaaaacacccaggaggaaaggtgatcgtaaaatctcacttgattgcatggagaaatggtgagaattccaagctcaaggtgatggcagttccctagtcattgaactcgttcagctatacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0102J11-sylo5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0102J11.1" temp_strand="+" temp_description="C07HBa0102J11.1  AC210354.1 htgs_phase:3 submitted_to_sgn_as:C07HBa0102J11 upload_account_name:france">
        <position start="23715" stop="27280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24015" g_stop="24090" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24091" i_stop="25665" i_length="1575">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25666" g_stop="25702" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="113" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25703" i_stop="25824" i_length="122">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25825" g_stop="26041" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="330" r_length="217" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26042" i_stop="26140" i_length="99">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26141" g_stop="26299" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="489" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26300" i_stop="26389" i_length="90">
            <donor d_prob="0.832" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26390" g_stop="26509" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="609" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26510" i_stop="26599" i_length="90">
            <donor d_prob="0.440" d_score="1.00"/>
            <acceptor a_prob="0.761" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26600" g_stop="26770" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="780" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="26771" i_stop="26880" i_length="110">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="26881" g_stop="26980" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="781" r_stop="880" r_length="100" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0102J11.1" gen_strand="+" ref_id="SGN-U331866" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>880</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0102J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U331866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24015" e_stop="24090"/>
          <exon e_start="25666" e_stop="25702"/>
          <exon e_start="25825" e_stop="26041"/>
          <exon e_start="26141" e_stop="26299"/>
          <exon e_start="26390" e_stop="26509"/>
          <exon e_start="26600" e_stop="26770"/>
          <exon e_start="26881" e_stop="26980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTCTAAAATTTGATGGTTTCTTTGGCTTCGTCTCAAGTTCTTGCAATCTGTAAAGATGCAGCTGGAATCGCCGGTAAGACTTCATTTTTTTTTTCTATGTAATTATTACTAATACTTTTTTAGTCGTAAAAATTTGATCTTGCTGATTTCTGCAAACTGTTTCTTGTTTTTTTGTACAAAATTTGGAAATAGTTTTGAATTCTATATAGAATCATTGCAACTCTTTTTGGCAAAAATTAAAGGGATGATCTTTATTTTGTGGAAGATTATTCAAGCTAAAGCTAAGTGAACAGATTTTTTTGCTAGAAGAATTGGGGAAGTTGTTGAAGTTTAGGATGTTGTGAGAAAAAAAAAATTGTGGGGGTTGAGGGATAGAAAATTAGTTTGTTTTGAAGTCAGCTAAAGCTAGTCGCACGGGGCTTGTCTAGTGCGGCATGTGGGACTTTTGTCATTCTTTGACGGGACAATTTTGATTTTGGGGATCCCAACATTGGATGAGACGGGCTCTGCTCTGATACCATGAGGAGGATTGTCCAAGCCTTATAACGAGTCTACCCATCTCATTAACCACCAATGTGGGACTTTTGTCATTCTTTAACAGTTTATGGACTATTGCGGTGGAGTGGGGTTTATCTTGTGCTCACGTGATGGTAAACCGCAAAAAGAAGTAGGCTGTTAGGCAGAATCTGAGATGTAGGGTAGGTTTTACATTATCTGTACTACAACAACAACATTACCCAATATAGTTTCATTGGTGGGGTCTGGGGAGGATGTGGTGTACGTAGACCTTACTCCTATCTCTATCTTTGTGGGTAGAGAGATTGTTTCTCATAGACCCTCGGCTCTAGAAGTATGGGTTTGATGAACCTATAGCCAAAAGGCTATATCTGCCTCAAGCAGTCATCTTTGGATTTAAACTTACCTTTTATTCTATTTCTAATCAGTAACAGAACGGCTGCACCAAAAGATGTGTTTCAACTTTAAAACGGATTGATCATCCTCGTGCTAGTGAATGGCATGAAAAAATGTCTACCTGTAGTTTCCGTTGCATTCATATATTATTGATTGCTTGTACTGTGTACTGTTTAGCAACCTCTTAATTTCTTTTCCCATATATGAGCTTAAGCCTGTAAATTTGAACCCGATTTACTACTAGCTTTTGCCGAAAGTACTTTCAAAAGTACAAGTAAAAAATATGTGTGTGTGTGGGTATAACTTGCACACATAAATTATAGTGATTCGCACGGTAAAGAAGTAATTTTTTGGGTGTATTTTACCAAACTAACTTCTGATGGAAGTATAAACATTTTATTGAGAGTGGGCAAATGGTTGGTTCGATAGGCCTAAGCAAGTTTAGTAGCTCTCTTTGAGCTAAAATTTACTTCTAGATTGAACTCTTGATGCAGTGTTTTTCATGTTAAAATTAAAGCACTTTTTGGTCAATCATATAGGAGGCATATTATTCCTGGCCGTGAAATGAATTAGATTGTAGAGGGAAAATGAGATAATACCCTTTACTTCTCAGCTTACTCGCTATTGTCTTTCCAACAATTTTTGAATTTTTTCTTAAATGAGGTTTGCAAACTTATAGTTGAGACTTTATCACGACTCGAGGGAAAACGTTAACCATCTTAGCTCCTTGTTGCAGGGAATATCTTTGCTTTTGGATTGTTTTTGTCTCCAATGTGAGTCTTAAGCTTTTCATCCTTCATTTTGATTTTCGCACTTCCATAATGTAGAAAACAAAGTTCACCTTGACCAATTACTTCTTTGTCCACAATCCAGTATCATTTATCTTTATTTTCAGGCCTACATTCATGAGAATAATGAGGAATCAATCAACTGAACAGTTCTCAGGGTTGCCGTACATCTATGGTCTATTGAACTGCTTAATTTGTGCCTGGTATGGCACCCCTCTCGTATCTCCCGACAATTTGTTGGTTACATCAGTTAATTCAGTTGGTGCTGTTTTTCAACTTGCCTACATTGTACTTTACGTAACGTATACAGAGAAAGAGAAAAAGGTTAATACTCTTCTGTTGTATTATTTAATTAATAAAGCAGTTTCACACTCATTCATAGCGTAATCTGTTAATCCGTATGCCCATCAATGTTGTTTGTAGTTCAGGATGTTTGGATGGATACTCACAGTCTTTGGCCTATTTGTTATTATTGTACTTGGAAGCTTGTTTATACTTGATCTGGAACTCCGACGCATCATCATTGGCTCCCTGAGTTGTGCTTCCTTGATATCAATGTTTGCCTCCCCACTGTTAATTATTGTATGTCTAACCGTTGACATTCAGAATTTTCTATCAAGTTCTTGTTCTCTAACGTTTTTCCGCGGATTCACTGACTAACTTGTATTACAGAATCTGGTGATCAGGACCAGGAGTGTTGAATTCATGCCGTTTTGTCTGTCCCTCTCCACCTTCCTAATGAGTGCCTCTTTCCTTTTGTATGGAATTTTCAGTTCTGATCCCTTTATATATGTGAGTTTTCTTTCTCTCGCTTGGGAAATTTCCAATTTTTTCTTTTGTTCCTCTCGCCCGACTCACGAAGGATTTCTACTTAAATTTCAGGTACCAAATGGCATTGGAACACTTTTAGGAGTTACACAATTGCTTTTATTTGCACATTACAGAAATTCTTCAAGAGAGGACTCTGCCGAAGGCCTTATAGTATCTTATTCATGAACTAGAATTCTAAGAAAGTAGTGTCTTTTGTGCATGAAAAAACACCCAGGAGGAAAGGTAAATTCTCGTTACGTGTGCATTTTGTGAACATATATCTTTCATTCTTTCTCGAGCTGTTAAATAACAAATATACCTTTTAATTGTACATCTCCCTTTATTTGTCCTAGGTGATCGTAAAATCTCACTTGATTGCATGGAGAAATGGTGAGAATTCCAAGCTCAAGGTGATGGCAGTTCCCTAGTCATTGAACTCGTTCAGCTATACCT</genome_strand>
        <mrna_strand>CTATTCTAAAATTTGATGGTTTCTTTGGCTTCGTCTCAAGTTCTTGCAATCTGTAAAGATGCAGCTGGAATCGCCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATATCTTTGCTTTTGGATTGTTTTTGTCTCCAAT..........................................................................................................................GCCTACATTCATGAGAATAATGAGGAATCAATCAACTGAACAGTTCTCAGGGTTGCCGTACATCTATGGTCTATTGAACTGCTTAATTTGTGCCTGGTATGGCACCCCTCTCGTATCTCCCGACAATTTGTTGGTTACATCAGTTAATTCACTTGGTGCTGTTTTTCAACTTGCCTACATTGTACTTTACGTAACGTATACAGAGAAAGAGAAAAAG...................................................................................................TTCAGGATGTTTGGATGGATACTCACAGTCTTTGGCCTATTTGTTATTATTGTACTTGGAAGCTTGTTTATACTTGATCTGGAACTCCGACGCATCATCATTGGCTCCCTGAGTTGTGCTTCCTTGATATCAATGTTTGCCTCCCCACTGTTAATTATT..........................................................................................AATCTGGTGATCAGGACCAGGAGTGTTGAATTCATGCCGTTTTGTCTGTCCCTCTCCACCTTCCTAATGAGTGCCTCTTTCCTTTTGTATGGAATTTTCAGTTCTGATCCCTTTATATAT..........................................................................................GTACCAAATGGCATTGGAACACTTTTAGGAGTTACACAATTGCTTTTATTTGCACATTACAGAAATTCTTCAAGAGAGGACTCTGCCGAAGGCCTTATAGTATCTTATTCATGAACTAGAATTCTAAGAAAGTAGTGTCTTTTGTGCATGAAAAAACACCCAGGAGGAAAG..............................................................................................................GTGATCGTAAAATCTCACTTGATTGCATGGAGAAATGGTGAGAATTCCAAGCTCAAGGTGATGGCAGTTCCCTAGTCATTGAACTCGTTCAGCTATACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-0K1fxY/lycopersicum_combined_unigene_seqs" ref_id="SGN-U317569" ref_strand="+" ref_description="SGN-U317569        Tomato 200607 #1 [20 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, weak similarity to Septation ring formation regulator (Swiss-Prot:O34894) (Bacillus subtilis) | chr3:4953600-4955663 REVERSE | Aliases: MIE1.26(evalue: 5e-69, score=258) genbank/nr: gi|18400511|ref|NP_566492.1| expressed protein [Arabidopsis thaliana] gi|14334820|gb|AAK59588.1| unknown protein [Arabidopsis thaliana] gi|15293201|gb|AAK93711.1| unknown protein [Arabidopsis thaliana](evalue: 4e-67, score=258)">
      <seq>agcgcagcgttcattctgctatggctgaatacggtgcttttcacaattaacagtttaacatcgccttcatcagatttgttcagctccttttagatatatttgatcatttcataaccaagacaagataaaacaaagaagatggccggtcggaatcgcgggcctccacttcctatgaaaggtggtcctcatggtggacttcctccaccaatgcatgagccccagtttgctaggggtcgcttgccggtgcctcatccagcaatgcttgaagaaatgagagaatcacagtttggaatgggctccagaccaatgcctccacaccctgctgttcttgaggaacacctggctagtcagcatgatgagattcaaggattattagttgataaccagaggttagctgctactcatgtagcactgaaacaagaagtagaagctgctcaatacgaacttcagcgaactgatcattatgcccgttctttgcgtatggaaactgatgtgcaaatgagagagctttatgagaagtctgctaagttggaaatggatctccaagtagctgatggtatgaggtcagagcttatgcgagtgcgctcggatattaaggagtttactgctgccagacaagatcttactgttgagtatcaaagaatgacacaggatttgagtagaatgactgcagatttacagcaggctccagcaattaaagctgaaagtgaaggtctaaaacaagagctgcagcgagcaagggcagctattgagaatgagaagaaaggatacgcagaaaactatgaatatggtcaggttatggagaaaaaattgctagctatggctcgagaacttgaaaaacttcaagctgaggttgctaatgcagaaaaaagagcccgagcagcagcagctgttgcgaatccaggtgcagggtacaatgcaaattatgggaatcctgaatctggttatccagggaattattatcctgctaattacggaatgaatcctatgaaccctgctcatcctgtgcagggtggtgctgaaggttattctcagtatggacatgggcctggtgcttggggtggttatgatgtgcagcgagctcaaggacccagataaactagttaatgtaggctgtcacacggtgttgtgcctactactctctggttataatcaatgtctaaatgagttcatcgacgacacaagcatgaaatttttgggcagaatccgcggctaaagtggttacttatattcagtctggcaaggcaatcgatttatctcagttattttgcaacttgtgctatcaagtgtagcagttaacagcaatgtagattttccagcactacctgttttttgaacaaatttctgggcatatttatatctccttgtgaattgtaatgctattttgtggctcctttttcagtcctactccaaattagttatcctaccttgttggcaatcaaaaatagtgaaaatttgattatcaaaaaaattcttactgtatggtattttaaaaacttgactaaaaaaaattcgtactagtattttatatatggttttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0102J11-sylo5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0102J11.1" temp_strand="+" temp_description="C07HBa0102J11.1  AC210354.1 htgs_phase:3 submitted_to_sgn_as:C07HBa0102J11 upload_account_name:france">
        <position start="28821" stop="37354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29121" g_stop="29213" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29214" i_stop="29760" i_length="547">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29761" g_stop="30407" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="740" r_length="647" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30408" i_stop="30485" i_length="78">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30486" g_stop="30649" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="741" r_stop="904" r_length="164" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30650" i_stop="31262" i_length="613">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31263" g_stop="31363" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="905" r_stop="1005" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31364" i_stop="31513" i_length="150">
            <donor d_prob="0.795" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31514" g_stop="31653" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1006" r_stop="1145" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31654" i_stop="35516" i_length="3863">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="35517" g_stop="35570" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1146" r_stop="1199" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="35571" i_stop="36709" i_length="1139">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36710" g_stop="37061" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1200" r_stop="1551" r_length="352" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0102J11.1" gen_strand="+" ref_id="SGN-U317569" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0102J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29121" e_stop="29213"/>
          <exon e_start="29761" e_stop="30407"/>
          <exon e_start="30486" e_stop="30649"/>
          <exon e_start="31263" e_stop="31363"/>
          <exon e_start="31514" e_stop="31653"/>
          <exon e_start="35517" e_stop="35570"/>
          <exon e_start="36710" e_stop="37061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGCAGCGTTCATTCTGCTATGGCTGAATACGGTGCTTTTCACAATTAACAGTTTAACATCGCCTTCATCAGATTTGTTCAGCTCCTTTTAGGTATGTATCTCCTCATATTCTGGGTTTACTGTCTCTGTTTTCGTTTTATCTTGCTTCTAACTAGAATTTATTTCTTTTTCTGTGCGATTTGGCGTCTTCGGATGTATATATGTTTGTGTTTGAGCTTCGTTTTTCTTATGCGTGATAATCATATATCGTTGTGTGTTTCGTTTGAACTGAATTTGGGGGTTTAGGGTTTTTCAGGGATTTGTAATTTTGAGGCCCTTATTAGTTTCCACTGCTTTAGTGGCTTTAGGGTTAAGCGGCCATTGATTTGTTGTTTTTCATTTCCACCTTCGAAGTGCTCACTCACTTCATAAACGACTAGGTCACAGCTTTGGATGTCATCTGTGAAAAAAAAATTGATATTGCTTAGGGGTAGAAGTTTTTTTCCCCTTTATGCTATGTTGATGCTCTGTCCCTCACAATTGATTTTAGGTCAAGGGTTTGGGGTGGGATGGAAGTCATTTACTAACACACCCTTATTCCCTTATCCATCGTAGTTTTCATTAGTCACTGATATCAATTGGTGTTTTTTTTCTAACAGATATATTTGATCATTTCATAACCAAGACAAGATAAAACAAAGAAGATGGCCGGTCGGAATCGCGGGCCTCCACTTCCTATGAAAGGTGGTCCTCATGGTGGACTTCCTCCACCAATGCATGAGCCCCAGTTTGCTAGGGGTCGCTTGCCGGTGCCTCATCCAGCAATGCTTGAAGAAATGAGAGAATCACAGTTTGGAATGGGCTCCAGACCAATGCCTCCACACCCTGCTGTTCTTGAGGAACACCTGGCTAGTCAGCATGATGAGATTCAAGGATTATTAGTTGATAACCAGAGGTTAGCTGCTACTCATGTAGCACTGAAACAAGAAGTAGAAGCTGCTCAATACGAACTTCAGCGAACTGATCATTATGCCCGTTCTTTGCGTATGGAAACTGATGTGCAAATGAGAGAGCTTTATGAGAAGTCTGCTAAGTTGGAAATGGATCTCCAAGTAGCTGATGGTATGAGGTCAGAGCTTATGCGAGTGCGCTCGGATATTAAGGAGTTTACTGCTGCCAGACAAGATCTTACTGTTGAGTATCAAAGAATGACACAGGATTTGAGTAGAATGACTGCAGATTTACAGCAGGCTCCAGCAATTAAAGCTGAAAGTGAAGGTCTAAAACAAGAGCTGCAGCGAGCAAGGTATTCTTTTCCCCAGAGTTCTGCTCTCCGTGGAACATTTTCAAATTGATAATTTTTTACTGTACTCTTGGTTTACAGGGCAGCTATTGAGAATGAGAAGAAAGGATACGCAGAAAACTATGAATATGGTCAGGTTATGGAGAAAAAATTGCTAGCTATGGCTCGAGAACTTGAAAAACTTCGAGCTGAGGTTGCTAATGCAGAAAAAAGAGCCCGAGCAGCAGCAGCTGTTGCGAATCCAGGTACTTTCCTTATCCAAGTTCAGAAACTGTAAAATGCAGATATGAATAAGCACATTGAAAGATCCATCTTCTGATAAAGACAAATTTTCCTTGCTGTTGTGTTTCTCAGCTGAATTGTCTTTGTTTGATTGAGCACTGTTAAGCATGATTGAATAGTGACTTTGTTTTAATGTATTAAGCTGCTATATGGTTCATGCAGTTACATGGTTGTCTATTTGATTTATTGCTTCATATCAGAATTCAGAGTTTCTCTAATAATATTTACCTCAAGTTGATAGTAGAATTTATCAAATTTACCATTGGGTTTGATTCCTTCACAAGCTTCTTTCAAGTGTATTGAATTTGCTCTATATAATACTGTTTATCTCCTCTTTTATTAAATAATAAATAACAAAAAACGGGTTTGTAATAGTTTATTGGAGGTGCAAATCCCTGACAAGCTCAGTTGGATATGATTGCTTCAATTGGTGCGTTGTTTAATTTTTTGTTTGTATATAGACAGAAAGAGACGCATGTAATCTTTCGCAGCTGCTGCTTTGAAATTTCTCATACTTATTGGACATAGATTGTTAGTACTGTACCAGTTTCATGAAGTTCATCTTTACCTACACAGGTGCAGGGTACAATGCAAATTATGGGAATCCTGAATCTGGTTATCCAGGGAATTATTATCCTGCTAATTACGGAATGAATCCTATGAACCCTGCTCATCCTGTAAGTAATTCTGTTGTGGTTTTGGCATTTCATGAGATTACAAAGTGAGCAGAAGGACAGCAGTATTTTGCTCTTTTTCATCTAGATGAAATGTGACTTCTTTTCCTTAGTATTTTAATGTCTAACTTTAGTTGTTCTTTTATATTTTAGGTGCAGGGTGGTGCTGAAGGTTATTCTCAGTATGGACATGGGCCTGGTGCTTGGGGTGGTTATGATGTGCAGCGAGCTCAAGGACCCAGATAAACTAGTTAATGTAGGCTGTCACACGGTGTTGTGCCTACTACTCTCTGGTACTTCAGAATGGATCTTAGAATTAGATTTGAAATTTTATACTAAATGATCTGAGATTGTTGTTTAATATTGTTACTTTCTTGCTTTTTGTGAGAAAAGTTTTAGCTGCCTGCTGGACTCTTATTAATGTCTGTTGCATCTAATCTAAATAGTTGTCTGCAAAATCAGTAATTACATTTTCTGATATGTGGTCCTTTAGCCTCGTATTTACTTATAAAGAAATGAAATTTACTTCGTTTAATGACATTGCACTATTAAAACTTTCTTAGAGTTGATCTACTATCAGATTGTAAATTATGGGAAACCACTGGAGAAAGAATGTCTAGTTTCTGTCAGATCCTGAATGCATTTTAAAATACATAATTACTTTTGTTCTTGTGAGTAATATTGAAAAAGAATATTACTGAATTGTTGTCATGTCTACATTATTAATTCAGACCCTATTTATAGACACTACAATACAATCCTTTACCAAGTAGGATACTATTTACTATTTCTATTTCTATTCTAAATAAGATTGTATAAATCTATTTCTATTCTAATAGGATTGTATAAAGTAATTCCTATTATAATAGGATTGTAAAAATTTATTTCTTTCTAATAGGATCGTATAAACTTATTTCTATTCTAATAGAATTGTATAAATCCATACCTGTTCTAACACTTCCCCTCAAGCTAGTGCATACAATTCATGTACTTAGCTTGTTACAAATGTAATTAATACGAGGACCGATGAGGGGCTTGGTGAGATATCTGCAAGTTGATTAGTTGACTTCACAAAATTTGCAATCAATCTTAATGTGCTTAATCTTTTCATGAGATACTGAATTTGATGCATAATGCCAATAAAATACAGAGTGATAAATGATAAAATTACTGTGTTGAACAACCCAAGCCAAACTTGCGACAACTACTTTTACCATAGAGTGACTTACATAATCGACCCACAAGGCTACCAAAATCCCCCGAGCAACAAAGTGCTCAAAATCTAGTATGAAGTATATCGATCGTGTTGGAATCAATAGATGCGTCGTTATTAAACAAGTAGGATACTATTTACTATTCTTATTTCTATTCCTATTCCTATTCTAAATAGGATTGTATAAAGCTATCCCTATTCTAGTAGAATTGTATAAACTTTCATATTCTAATCAGAGCCAAACCCCGGATTTAAAGTGCCTAGCATTAGCGAATTTTTCAATAACGATTAATGGATAATAGCAAATTTTTCAATAACGATTAATGGATAATAGCGAATTTTTTAATGACGGTTAATGGATAATGTCGTATTTGACTAGTCATTTATAGCTATTGGATGGTCATGAGTGTGAATCCCCTTATTGACAATTTTGATGTTATAAATAATCATCAAGTTTGTAATAAAAAGAGTAAAAAATGGGATGTTGACGAGAATTGAACCTAGGGGTGAATTTCCTTGCTTCTACCAGCGTACTAAAGCAGTTTTATGTTTCTCTAAGGGTGCGCTCTTATTATATTCGCTGTTTCTATTGAGATAGATATCTATATATACATGATTTTTTTCGAAGTTAATGGGTGCACGCGCACCCCACCTATACATGTGGGTTCGTCTCTAATTCTAATAGGATTGTATAATTTTATTCATGTAATAGGATTGTATAAATATACAAATCTATTCATGTTCTAACAGTTCTTACAACAACAACTACGCCTCAATTTCAAGCTAGTTGGGGTTGGCTGAATGAATCGTCGGCATCATAAATGCTCTATTTGGGGTTGTGTTGTTTCAATACTCCATATTTAAGGATTCTCAAACATTAGAGGTCCCCTGATATACTCTAGTAACTTTATTTCTTCTAATATACCAAGGCCTCAATTTGTTTGCACTTAATAAAGGTCTTCAGATCTCTGTTATTAAGTCTGAACTTACTGTCGTTCTATAGAACTTTATTTTTACTTTGCCTGGGTATTCTCTTATCTCATAACTTTGGCAGTATTCCATTTCGATATTCCTACTATAGTGCAGTTGCTAGGCATAACATCTGTCAAATTGCTCTTCTGGAATATTGGAACTGCATTTCTGAACCGTCTTCATTAGATGCCTCAGTTCCATCTAATCTCACCTCAACTTCATTACTATCTTGCTGGCTGGACTCGCAGTGTGTGTATTTTGTCTTACTCTACTTCCTAAATCCCTTACTCTCTTAAGTGCTTCTCCGCTGCTCGAACTATTAATTGTTCTTGATGTTAAAAAAATGTAAAGAAAAGTCGTCTTTCATTGTGAAAGAAAAATGAAGTCACTTAATCAAGTATAAAGATTCATTTATGGATTTGGTTGTCTATCACGCCTAAAAGTGCGCAGGTATTATGTTTTCCTCATGAGAAAAAGTTCCGGGAATCTTTTAGATGATCGTTTTTTTTTTGTCATTATTAAAAGAAGATTTGAATGCTCAGTATGGTATGACATTGTGCATATTATTTGTTCGCATCCAAAGTTATCCCAGGATTATTATCCTATAACCACGGGACTAATTTATCCCCCGGGTGGGATAAAATAACACCATCTTTGAGGTATAAATTTCAGTTATACCTTCAACGAAACAAGTATAAAATTTTAATCTCCAAACTTAATCTGGGTATATGGCACCTTTCTGTTACACAGGGGTGGGGTGGGGTGGGTGGGTGGTACTAAACTAGTAGGATATGTTTGACATTAAAAGATTACAAATTATAATCCCTCTCTCTGCTAAAAGGATATTGATTTTTCTGTATATCCAAGTGTTGTAATTAAATGTCGTAAATTAGTTTAGCTGGTAAGGCAGACACTTTTCTTAGAGCTAATTCAATCGCATAAGACAGTTTCCATGTGCCATTTTACCTTTACCATCTTGTCAGCTTATTACCTTTTTTACTTTTACCATCTTATCTCATAAAATCTTGATGACTTTTGACTTAAACGGGCATTGAAATATTTGGGGCTCAAAGTCTGTTTGCAAATTTGTGATGAGCACTTCTCTTGTACCGTGTTGGTGTATCAAAGTTGATAGGTACAGAGGGACATTCTGCTATGCATTGTGTGCCAAAAATAACTTCAATCAAATGTGGTATATGGTAGCTTTCTAGTAGCGTTTGTTGTGATCCGTTCTCATTCCCTTATATTTGCTGGGAGGAGTTGCAATTTCTGTATGAACTTGCACTTGTGGATGGAAATATGAGATTTACGATAATTCATTTAACCCAAGATGGAGTTTTAAGTTATCCCAGAGCTCTTCGAAGTTCGAAGTATGACCTTAAATTGGGTTTAAAGGCAAACATTTTGAAGTGCTCTTACCTGTTAGTACATGTGATATTCTATAGGGCACAGGCCCAGGAAACCATGTACATATGAACTCATGTGTGGACAGATGGAGTGCTCTGGGATGGAAACTTTACCGCAATAACTTTCCCATTGCTGCACCGCATCTCAAAAACAAGGGTGAATAATGTACATGCTCTACAAGGGTGAATTCTTTTCATTCTTTATTGGTAAGGATGTTGACAGACATCAGAAAACTGAAGCTAATTGAGTTGGAAAGAAAAAAAATTAACTGAAAAGAAGGAGAATGTATGGGGTTGAACTTTGGGAGATAATCTAGCTGTGTTGCTACGAGATTGTTTTTCTTGCTCAAGTAGAGCTTCTTGATATTTGTTATTCTGTTCTACTGCTTTATTGATTCTGCGAAACCTAATTTGTAGTTCAAGTCACTGTTTTATTTGGTCTCATGGTTTGAAGGCAAAGCACTCTTTTTAGGTTTTCAAAGGTGTCTTTCATTCATATGATGAAATCTGCTACTTTTTAGGACCCATCCTTGTAATTCATATTCTAATCTTCTTTTATTTCCAGGTTATAATCAATGTCTAAATGAGTTCATCGACGACACAAGCATGAAATTTTTGGGTGAGTGTTTACTTATCATTATCCAAATGAGTACTTTTATCAGATAACTGCTTGTTTTAAAAGTAATTTAGCAACATTCTAAGACCAGTTTTCTCTTCTCTCTATCTTTTTGATTTTCTTTTGGATCTCTTTAGCATTTAATAACAGAAATATTGCAATATTTAGGCCCTATTTATTAAGACAACATGTTTTTATTGATGAGTATTGTGAACTTAGGTTGTCCTGGACTTCACATAATGGTTTCCTCATGGAAAAGTTTGACAGCAAATGTGGGGAAGAGATACATGTATGAGGGAAAGTCAATTCTTGCTTCCTTCTTTGATACCTCTGTTCCATAAAATGATCCACTACCATTTAAATATTGCTTTTACTCTACTTTTTAGTACAAATTACCATAACTTAACACCATTATGGATTCCTTATCACCACATTGATCATTCATTATAAGCTAGCGAACTAGTGATCTTTACATTAAACCATCTGGAAGATTACTTTAAGGAAGTATTTTGTTTTGTACACTTTCCACCAATAGTATCTTTTATGAAGAATGTATTAAGTCAGACTAACTAGGTTCGCAGTTGCAAAATTATAGCTTGAAAAAGTTGGTCGAAATGCCAAGTTGTTTCATCAAATGTTGTAGTAGTCATTTTCTTCTTCTTCTATTTAAATAATAACACCTAAACTTCTATCCCATACATGCTTGAGTTGGTTGTTTGAATCCTCTATATCTGATGCATCTTTTAAGACAAAAATTAGAGATTCTGTAACACAGGGGGTTTCCCAAAATCTCCTACTTATGCCTACTGACATGCAAATCTCAAAACAAACTAGGAAATCCTTGGCAAACACAGGATGTAATGTAAGCAAACTAACACTGTTTTGAATCAATACAAGCTGGATGAGTTGCTCGTATTGTTCTTTTTGCATGGATTCTTATAGATTGTTAAAAAAGTGAACTGATTGTAAGTGAATCATCTTCTTATGATTACGACTTGTGGTTGCTGTAAAGACCTTACTGTGTTTGGCTTTTTTAGATCTACACCGTTGTTTGAGATAACTTGAACTAGTATATGCACGAGAACAGTGTTGTTTGTTTTTGCATATCGTCTAAAGAAAGTTTTGTTTGTTGTATGCAACAGGCAGAATCCGCGGCTAAAGTGGTTACTTATATTCAGTCTGGCAAGGCAATCGATTTATCTCAGTTATTTTGCAACTTGTGCTATCAAGTGTAGCAGTTAACAGCAATGTAGATTTTCCAGCACTACCTGTTTTTTGAACAAATTTCTGGGCATATTTATATCTCCTTGTGAATTGTAATGCTATTTTGTGGCTCCTTTTTCAGTCCTACTCCAAATTAGTTATCCTACCTTGTTGGCAATCAAAAATAGTGAAAATTTGATTATCAAAAAAATTCTTACTGTATGGTATTTTAAAAACTTGACTAAAAAAAATTCGTACTAGTATTTTATATATGGTTTTAAAAACCGTTAG</genome_strand>
        <mrna_strand>AGCGCAGCGTTCATTCTGCTATGGCTGAATACGGTGCTTTTCACAATTAACAGTTTAACATCGCCTTCATCAGATTTGTTCAGCTCCTTTTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATTTGATCATTTCATAACCAAGACAAGATAAAACAAAGAAGATGGCCGGTCGGAATCGCGGGCCTCCACTTCCTATGAAAGGTGGTCCTCATGGTGGACTTCCTCCACCAATGCATGAGCCCCAGTTTGCTAGGGGTCGCTTGCCGGTGCCTCATCCAGCAATGCTTGAAGAAATGAGAGAATCACAGTTTGGAATGGGCTCCAGACCAATGCCTCCACACCCTGCTGTTCTTGAGGAACACCTGGCTAGTCAGCATGATGAGATTCAAGGATTATTAGTTGATAACCAGAGGTTAGCTGCTACTCATGTAGCACTGAAACAAGAAGTAGAAGCTGCTCAATACGAACTTCAGCGAACTGATCATTATGCCCGTTCTTTGCGTATGGAAACTGATGTGCAAATGAGAGAGCTTTATGAGAAGTCTGCTAAGTTGGAAATGGATCTCCAAGTAGCTGATGGTATGAGGTCAGAGCTTATGCGAGTGCGCTCGGATATTAAGGAGTTTACTGCTGCCAGACAAGATCTTACTGTTGAGTATCAAAGAATGACACAGGATTTGAGTAGAATGACTGCAGATTTACAGCAGGCTCCAGCAATTAAAGCTGAAAGTGAAGGTCTAAAACAAGAGCTGCAGCGAGCAAG..............................................................................GGCAGCTATTGAGAATGAGAAGAAAGGATACGCAGAAAACTATGAATATGGTCAGGTTATGGAGAAAAAATTGCTAGCTATGGCTCGAGAACTTGAAAAACTTCAAGCTGAGGTTGCTAATGCAGAAAAAAGAGCCCGAGCAGCAGCAGCTGTTGCGAATCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAGGGTACAATGCAAATTATGGGAATCCTGAATCTGGTTATCCAGGGAATTATTATCCTGCTAATTACGGAATGAATCCTATGAACCCTGCTCATCCT......................................................................................................................................................GTGCAGGGTGGTGCTGAAGGTTATTCTCAGTATGGACATGGGCCTGGTGCTTGGGGTGGTTATGATGTGCAGCGAGCTCAAGGACCCAGATAAACTAGTTAATGTAGGCTGTCACACGGTGTTGTGCCTACTACTCTCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATAATCAATGTCTAAATGAGTTCATCGACGACACAAGCATGAAATTTTTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAATCCGCGGCTAAAGTGGTTACTTATATTCAGTCTGGCAAGGCAATCGATTTATCTCAGTTATTTTGCAACTTGTGCTATCAAGTGTAGCAGTTAACAGCAATGTAGATTTTCCAGCACTACCTGTTTTTTGAACAAATTTCTGGGCATATTTATATCTCCTTGTGAATTGTAATGCTATTTTGTGGCTCCTTTTTCAGTCCTACTCCAAATTAGTTATCCTACCTTGTTGGCAATCAAAAATAGTGAAAATTTGATTATCAAAAAAATTCTTACTGTATGGTATTTTAAAAACTTGACTAAAAAAAATTCGTACTAGTATTTTATATATGGTTTTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-0K1fxY/lycopersicum_combined_unigene_seqs" ref_id="SGN-U342317" ref_strand="+" ref_description="SGN-U342317        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|762925|emb|CAA59990.1| elastin like protein [Drosophila melanogaster](evalue: 1e-05, score=53.1)">
      <seq>tatgtttgacattaaaagattacaaattataatccctctctctgctaaaaggatattgatttttctgtatatccaagtgttgtaattaaatgtcgtaaattagtttagctggtaaggcagacacttttcttagagctaattcaatcgcataagacagtttccatgtgccattttacctttaccatcttgtcagcttattaccttttttacttttaccatcttatctcataaaatcttgatgacttttgacttaaacgggcattgaaatatttggggctcaaagtctgtttgcaaatttgtgatgagcacttctcttgtaccgtgttggtgtatcaaagttgataggtacagagggacattctgctatgcattgtgtgccaaaaataacttcaatcaaatgtggtatatggtagctttctagtagcgtttgttgtgatccgttctcattcccttatatttgctgggaggagttgcaatttctgtatgaacttgcacttgtggatggaaatatgagatttacgataattcatttaacccaagatggagttttaagttatcccagagctcttcgaagttcgaaaaatgaccttaaattgggtttaaaggcaaacattttgaagtgctcttacctgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0102J11-sylo5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0102J11.1" temp_strand="+" temp_description="C07HBa0102J11.1  AC210354.1 htgs_phase:3 submitted_to_sgn_as:C07HBa0102J11 upload_account_name:france">
        <position start="34036" stop="35269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34336" g_stop="34969" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="634" r_length="634" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0102J11.1" gen_strand="+" ref_id="SGN-U342317" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0102J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U342317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34336" e_stop="34969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGTTTGACATTAAAAGATTACAAATTATAATCCCTCTCTCTGCTAAAAGGATATTGATTTTTCTGTATATCCAAGTGTTGTAATTAAATGTCGTAAATTAGTTTAGCTGGTAAGGCAGACACTTTTCTTAGAGCTAATTCAATCGCATAAGACAGTTTCCATGTGCCATTTTACCTTTACCATCTTGTCAGCTTATTACCTTTTTTACTTTTACCATCTTATCTCATAAAATCTTGATGACTTTTGACTTAAACGGGCATTGAAATATTTGGGGCTCAAAGTCTGTTTGCAAATTTGTGATGAGCACTTCTCTTGTACCGTGTTGGTGTATCAAAGTTGATAGGTACAGAGGGACATTCTGCTATGCATTGTGTGCCAAAAATAACTTCAATCAAATGTGGTATATGGTAGCTTTCTAGTAGCGTTTGTTGTGATCCGTTCTCATTCCCTTATATTTGCTGGGAGGAGTTGCAATTTCTGTATGAACTTGCACTTGTGGATGGAAATATGAGATTTACGATAATTCATTTAACCCAAGATGGAGTTTTAAGTTATCCCAGAGCTCTTCGAAGTTCGAAGTATGACCTTAAATTGGGTTTAAAGGCAAACATTTTGAAGTGCTCTTACCTGTT</genome_strand>
        <mrna_strand>TATGTTTGACATTAAAAGATTACAAATTATAATCCCTCTCTCTGCTAAAAGGATATTGATTTTTCTGTATATCCAAGTGTTGTAATTAAATGTCGTAAATTAGTTTAGCTGGTAAGGCAGACACTTTTCTTAGAGCTAATTCAATCGCATAAGACAGTTTCCATGTGCCATTTTACCTTTACCATCTTGTCAGCTTATTACCTTTTTTACTTTTACCATCTTATCTCATAAAATCTTGATGACTTTTGACTTAAACGGGCATTGAAATATTTGGGGCTCAAAGTCTGTTTGCAAATTTGTGATGAGCACTTCTCTTGTACCGTGTTGGTGTATCAAAGTTGATAGGTACAGAGGGACATTCTGCTATGCATTGTGTGCCAAAAATAACTTCAATCAAATGTGGTATATGGTAGCTTTCTAGTAGCGTTTGTTGTGATCCGTTCTCATTCCCTTATATTTGCTGGGAGGAGTTGCAATTTCTGTATGAACTTGCACTTGTGGATGGAAATATGAGATTTACGATAATTCATTTAACCCAAGATGGAGTTTTAAGTTATCCCAGAGCTCTTCGAAGTTCGAAAAATGACCTTAAATTGGGTTTAAAGGCAAACATTTTGAAGTGCTCTTACCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-0K1fxY/lycopersicum_combined_unigene_seqs" ref_id="SGN-U322516" ref_strand="+" ref_description="SGN-U322516        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: AT2G42880.1 | Symbol: None | mitogen-activated protein kinase, putative / MAPK, putative (MPK20), mitogen-activated protein kinase (MAPK)(AtMPK20), PMID:12119167 | chr2:17847465-17851439 REVERSE | Aliases: F7D19.12, F7D19_12 (evalue: 8e-95, score=221) genbank/nr: gi|26000756|gb|AAN75467.1| mitogen-activated protein kinase [Lycopersicon esculentum](evalue: 5e-136, score=287)">
      <seq>tatacacctgctattgatatctggagcatcgggtgcatgtttgctgaggttttgacggggaaaccattatttccgggcaaaagtgttgttcaccagttggatttgattactgatcttctggggacgccatcagttgatattgtatctggggttcgtaatgaaaaggcaaggaagtacttgacagatatgaagaaaaaaagcccagttccttttactgagaaatttcgaaaagcagatcctttggcacttcgactgttgcagaggttgttagcatttgatccaaaggatcgcccaactgctgaagaggctttggctgatccgtacttcaagggactggccaagattgagagggaaccttctagtcaaccaatctcgaagctggagtttgagtttgagcgacgaagggtcacagaaggatgacattcgtgaactaatatttagggagatacttgagtatcatcctcaacttctgaaggactacatggctggaaatagtggtgcaaattttatctatcctagtgccattggtaatttcagaaggcaatttgcttatctagaggagaatagtggtaaaagtggcccagtaatacctcctggtcgaaagcacgtctctctcccgcgatctactgtaaattccagtaccatcccccccagaacacagcagaatcctatgtttgatcatagacaagtaacagaaaaggcaactgctggcgtcagagtctcagacccgaaggttttgcgaccaccacctcgagtacccacagccaaacctggaagagttttaggaccagtatatgatggtgacagaagcatcaaagaagtcactgatggaagagtatatgcccagaactctgtcgtccaacctcatggcatgtctccacaatatctgttcaggagtaactctacacatctagagaagtgtgggacagaagcagagaaggaccgctctcaagttaaacagcaacatggccagtgcatggttgccaagtcgtccgctagtatgagttttgagatgaacactaacccatattaccatacacaggcaagggtagcacagttgggaggtcaaatcgccatggatgcaaaattactacaggcacaaacacagtttggtgcagtcggtgctgcagctgtcgctgttgctgctcacagagaggtcggcaccgttcagtatggtctataacctagtcgatactattgtttgatggttctttgaatcaagtgaggacatccaccttgcagtgagacagttcacgatatgcattttccctcaaatcaatcagcatgggagatttgaagagggatctgttaacccggttaatgattttaccatttattagttgtcagggtctctaaataggtattctttaggttcaggttgccctgttgagttagtatttatgcccccttgtacatatatatatatataggcgcgatgcattaattgatataatgaagaaaaaatattgttcttccaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0102J11-sylo5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0102J11.1" temp_strand="-" temp_description="C07HBa0102J11.1  AC210354.1 htgs_phase:3 submitted_to_sgn_as:C07HBa0102J11 upload_account_name:france">
        <position start="44856" stop="41753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44556" g_stop="44407" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44406" i_stop="44316" i_length="91">
            <donor d_prob="0.661" d_score="1.00"/>
            <acceptor a_prob="0.141" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44315" g_stop="44160" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="306" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44159" i_stop="44038" i_length="122">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44037" g_stop="43826" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="519" r_length="213" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43825" i_stop="43726" i_length="100">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43725" g_stop="43624" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="621" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43623" i_stop="43297" i_length="327">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43296" g_stop="43154" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="764" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43153" i_stop="42767" i_length="387">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42766" g_stop="42056" g_length="711"/>
          <reference_exon_boundary r_type="cDNA" r_start="765" r_stop="1475" r_length="711" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42055" i_stop="41777" i_length="279">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.827" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="41776" g_stop="41760" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1476" r_stop="1492" r_length="17" r_score="0.706"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0102J11.1" gen_strand="-" ref_id="SGN-U322516" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1491</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0102J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U322516" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44556" e_stop="44407"/>
          <exon e_start="44315" e_stop="44160"/>
          <exon e_start="44037" e_stop="43826"/>
          <exon e_start="43725" e_stop="43624"/>
          <exon e_start="43296" e_stop="43154"/>
          <exon e_start="42766" e_stop="42056"/>
          <exon e_start="41776" e_stop="41760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATACACCTGCTATTGATATCTGGAGCATCGGGTGCATTTTTGCGGAGGTTTTGACGGGGAAACCATTATTTCCGGGCAAAAGTGTTGTTCACCAGTTGGATTTGATTACTGATCTTCTGGGGACGCCATCAGTTGATATTGTATCTGGGGTAAGAGCTGTCAGTTGGGAGTAATATTTTTTTGTTGATGTTAGCATTGCCTGACAGCATGTTGATAGAAGAGTACTCCTCTTGAGTGCAGGTTCGTAATGAAAAGGCAAGGAAGTACTTGACAGATATGAAGAAAAAAAGCCCAGTTCCTTTTACTGAGAAATTTCGAAAAGCAGATCCTTTGGCACTTCGACTGTTGCAGAGGTTGTTAGCATTTGATCCAAAGGATCGCCCAACTGCTGAAGAGGTACACTCCCTCATATATTCCTGATGTTAAGATTACGTGAATGGCATATCCACGGCATATCCACGTGCTTGTCTCTTTCTAATTTCATTTTCATTTTGTGTGTTTTTCCTCCTATCTTTTAGGCTTTGGCTGATCCGTACTTCAAGGGACTGGCCAAGATTGAGAGGGAACCTTCTAGTCAACCAATCTCGAAGCTGGAGTTTGAGTTTGAGCGACGAAGGGTCACA-AAGGATGACATTCGTGAACTAATATTTAGGGAGATACTTGAGTATCATCCTCAACTTCTGAAGGACTACATGGCTGGAAATAGTGGTGCAAATTTTATCTATCCTAGGTTGTAATATACTTCTCTACTATTTCTAGTCTCTATTTTCTTGTACCACTATATCTAATCTAAATTACTGACTGATGGTGTGACAATCATTGAATTGCAGTGCCATTGGTAATTTCAGAAGGCAATTTGCTTATCTAGAGGAGAATAGTGGTAAAAGTGGCCCAGTAATACCTCCTGGTCGAAAGCACGTCTCTCTCCCGCGGTATGATTCCATGAGTTGTTTGTCTTGTTGGTTGTGTCAATGAATATGTCCTGTTCCATTTCTTTTATGCTTCTCTTCACTGTATCTTCCCAAAAAAGAAGTTTTTGTTTGTTCTTGTATTTGCTGGAAAAGTAACCTGCCTGAAAAGAAGTTGTACTTGCATACTACTGAGGAAGTTTGGATTTGGAATATTAACTTGTTCATCACATTGGAAAAACTGTTACCTTAGAGCATGCCCCTTTCCCCCTTTTCCTTTTTGCTCTCTCCTTTCCTTTTTCAGTGTGCTTATTTGGGGCTTCATTACATATATTCTTAAATGTGTTGCAGATCTACTGTAAATTCCAGTACCATCCCCCCCAGAACACAGCAGAATCCTATGTTTGATCATAGACAAGTAACAGAAAAGGCAACTGCTGGCGTCAGAGTCTCAGACCCGAAGGTTTTGCGACCACCACCTCGAGTACCCACAGGTAAGGTTGACATTGTCTGTGCTGGCACTCATAGTGATAATGTACCTTTTTGTCCACATCTTCATAGTGAACTCACATATTTCACCACATGTAATAATACATTGGATGAACTGGAACTCAGTACTCGGCTCACAAGAAGTCAATTTAGGGAATCTTCTCAAGTTATATCCCCTGCTTGTGGAAGAGATTGGGGGGGGGGGGGACAAATAAGGATGAGGAGAGATCATATTTAAAGGTGCCCTAGTGAGTATATACGGAATGCTGAAACTTAGGAAGTTTCTTGTGCTTGTTGGAATCGCTTTTAATGTCCTTGTCAAATATTACTTAGTGGGTTGTGCATGTCTGCTTGTTTGATTCTTCTTTGATATTCATTTCTATCATTTTCAGCCAAACCTGGAAGAGTTTTAGGACCAGTATATGATGGTGACAGAAGCATCAAAGAAGTCACTGATGGAAGAGTATATGCCCAGAACTCTGTCGTCCAACCTCATGGCATGTCTCCACAATATCTGTTCAGGAGTAACTCTACACATCTAGAGAAGTGTGGGACAGAAGCAGAGAAGGACCGCTCTCAAGTTAAACAGCAACATGGCCAGTGCATGGTTGCCAAGTCGTCCGCTAGTATGAGTTTTGAGATGAACACTAACCCATATTACCATACACAGGCAAGGGTAGCACAGTTGGGAGGTCAAATCGCCATGGATGCAAAATTACTACAGGCACAAACACAGTTTGGTGCAGTCGGTGCTGCAGCTGTCGCTGTTGCTGCTCACAGAGAGGTCGGCACCGTTCAGTATGGTCTATAACCTAGTCGATACTATTGTTTGATGGTTCTTTGAATCAAGTGAGGACATCCACCTTGCAGTGAGACAGTTCACGATATGCATTTTCCCTCAAATCAATCAGCATGGGAGATTTGAAGAGGGATCTGTTAACCCGGTTAATGATTTTACCATTTATTAGTTGTCAGGGTCTCTAAATAGGTATTCTTTAGGTTCAGGTTGCCCTGTTGAGTTAGTATTTATGCCCCCTTGTACATATATATATATATAGGCGCGATGCATTAATTGATATAATGAAGAAAAAATATTGTTCTTCCCATTTTTTTAACTCTAAGAGAACTCATTTGAAACAATGAATCATCAAAAGAGGTAATATAATTTGAAACAATGATGAGGTAATATAATTATAAATAAGGAAAAAATTGTATATAATAGCAAATTAAGAAATTAAATTAAGTATTATAATTACACTTTGATTTAATTGTACCCCGTAGCAAGCTATTTGTCAGTCACCTCTCTGTTTTTCGCGCCATCTCTTGCTCCCTCACTTTTATACAAACATAAGTGTATAAAATGCGTTTATGTTTGTATAAAGCGAGAAATATACAAAAA</genome_strand>
        <mrna_strand>TATACACCTGCTATTGATATCTGGAGCATCGGGTGCATGTTTGCTGAGGTTTTGACGGGGAAACCATTATTTCCGGGCAAAAGTGTTGTTCACCAGTTGGATTTGATTACTGATCTTCTGGGGACGCCATCAGTTGATATTGTATCTGGG...........................................................................................GTTCGTAATGAAAAGGCAAGGAAGTACTTGACAGATATGAAGAAAAAAAGCCCAGTTCCTTTTACTGAGAAATTTCGAAAAGCAGATCCTTTGGCACTTCGACTGTTGCAGAGGTTGTTAGCATTTGATCCAAAGGATCGCCCAACTGCTGAAGAG..........................................................................................................................GCTTTGGCTGATCCGTACTTCAAGGGACTGGCCAAGATTGAGAGGGAACCTTCTAGTCAACCAATCTCGAAGCTGGAGTTTGAGTTTGAGCGACGAAGGGTCACAGAAGGATGACATTCGTGAACTAATATTTAGGGAGATACTTGAGTATCATCCTCAACTTCTGAAGGACTACATGGCTGGAAATAGTGGTGCAAATTTTATCTATCCTAG....................................................................................................TGCCATTGGTAATTTCAGAAGGCAATTTGCTTATCTAGAGGAGAATAGTGGTAAAAGTGGCCCAGTAATACCTCCTGGTCGAAAGCACGTCTCTCTCCCGCG.......................................................................................................................................................................................................................................................................................................................................ATCTACTGTAAATTCCAGTACCATCCCCCCCAGAACACAGCAGAATCCTATGTTTGATCATAGACAAGTAACAGAAAAGGCAACTGCTGGCGTCAGAGTCTCAGACCCGAAGGTTTTGCGACCACCACCTCGAGTACCCACAG...................................................................................................................................................................................................................................................................................................................................................................................................CCAAACCTGGAAGAGTTTTAGGACCAGTATATGATGGTGACAGAAGCATCAAAGAAGTCACTGATGGAAGAGTATATGCCCAGAACTCTGTCGTCCAACCTCATGGCATGTCTCCACAATATCTGTTCAGGAGTAACTCTACACATCTAGAGAAGTGTGGGACAGAAGCAGAGAAGGACCGCTCTCAAGTTAAACAGCAACATGGCCAGTGCATGGTTGCCAAGTCGTCCGCTAGTATGAGTTTTGAGATGAACACTAACCCATATTACCATACACAGGCAAGGGTAGCACAGTTGGGAGGTCAAATCGCCATGGATGCAAAATTACTACAGGCACAAACACAGTTTGGTGCAGTCGGTGCTGCAGCTGTCGCTGTTGCTGCTCACAGAGAGGTCGGCACCGTTCAGTATGGTCTATAACCTAGTCGATACTATTGTTTGATGGTTCTTTGAATCAAGTGAGGACATCCACCTTGCAGTGAGACAGTTCACGATATGCATTTTCCCTCAAATCAATCAGCATGGGAGATTTGAAGAGGGATCTGTTAACCCGGTTAATGATTTTACCATTTATTAGTTGTCAGGGTCTCTAAATAGGTATTCTTTAGGTTCAGGTTGCCCTGTTGAGTTAGTATTTATGCCCCCTTGTACATATATATATATATAGGCGCGATGCATTAATTGATATAATGAAGAAAAAATATTGTTCTTC.......................................................................................................................................................................................................................................................................................CAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-0K1fxY/lycopersicum_combined_unigene_seqs" ref_id="SGN-U330937" ref_strand="+" ref_description="SGN-U330937        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT1G53510.1 | Symbol: None | similar to mitogen-activated protein kinase, putative / MAPK, putative (MPK19) [Arabidopsis thaliana] (TAIR:At3g14720.1); similar to mitogen-activated protein kinase, putative / MAPK, putative (MPK16) [Arabidopsis thaliana] (TAIR:At5g19010.1); similar to mitogen-activated protein kinase, putative / MAPK, putative (MPK20) [Arabidopsis thaliana] (TAIR:At2g42880.1); similar to mitogen-activated protein kinase, putative / MAPK, putative (MPK9) [Arabidopsis thaliana] (TAIR:At3g18040.1); similar to mitogen-activated protein kinase, putative / MAPK, putative (MPK8) [Arabidopsis thaliana] (TAIR:At1g18150.2); similar to MAP kinase-like protein [Oryza sativa (japonica cultivar-group)] (GB:NP_917813.1); similar to putative mitogen-activated protein kinase [Oryza sativa (japonica cultivar-group)] (GB:NP_916793.1); similar to putative mitogen-activated protein kinase wjumk1 [Oryza sativa (japonica cultivar-group)] (GB:CAD54742.1); similar to MAPK6 [Oryza sativa (japonica cultivar-group)] (GB:AAR11478.1); similar to mitogen-activated protein kinase 7-like [Oryza sativa (japonica cultivar-group)] (GB:BAD61401.1); contains InterPro domain Tyrosine protein kinase (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase (InterPro:IPR002290); contains InterPro domain Protein kinase (InterPro:IPR000719) | chr1:19974332-19978061 REVERSE | Aliases: F22G10.12 (evalue: 4e-17, score=84.3) genbank/nr: double(evalue: 2e-15, score=84.3)">
      <seq>ttcaattggcctccttgttgctctctctctcttctccatctttcaaaacccgaaaaagggttacttctttctacacccttcgttcattttctgttcatttttttgtaggattttaggctcaactgatactaattttgtgtataaaaatcatactgttttcttcaaaagtggggttcgctctttgttagtacgtttcaatacgttgttgacgtcggtggggcgaagtgctctgctgattctctgatttattccatttggggttgttcagatttgttttatttttggatatttttgatctgatcttctgtataagatcaggggaacctagagaagaaaagggtaccttcagatatcctctttttttgaatttattcgttacccagattgtttaaagtcttcaaaagatgcagcaagatcagcgcatgaagagttccaaagaagtggagttcttcaccgagtacggtgatgctaataggtataaaattttggaagttataggcaagggaagttatggagtagtttgtgctgcaattgacactcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0102J11-sylo5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0102J11.1" temp_strand="-" temp_description="C07HBa0102J11.1  AC210354.1 htgs_phase:3 submitted_to_sgn_as:C07HBa0102J11 upload_account_name:france">
        <position start="47881" stop="45738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47581" g_stop="47154" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47153" i_stop="46153" i_length="1001">
            <donor d_prob="0.919" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46152" g_stop="46038" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="543" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0102J11.1" gen_strand="-" ref_id="SGN-U330937" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0102J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U330937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47581" e_stop="47154"/>
          <exon e_start="46152" e_stop="46038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATTGGCCTCCTTGTTGCTCTCTCTCTCTTCTCCATCTTTCAAAACCCGAAAAAGGGTTACTTCTTTCTACACCCTTCGTTCATTTTCTGTTCATTTTTTTGTAGGATTTTAGGCTCAACTGATACTAATTTTGTGTATAAAAATCATACTGTTTTCTTCAAAAGTGGGGTTCGCTCTTTGTTAGTACGTTTCAATACGTTGTTGACGTCGGTGGGGCGAAGTGCTCTGCTGATTCTCTGATTTATTCCATTTGGGGTTGTTCAGATTTGTTTTATTTTTGGATATTTTTGATCTGATCTTCTGTATAAGATCAGGGGAACCTAGAGAAGAAAAGGGTACCTTCAGATATCCTCTTTTTTTGAATTTATTCGTTACCCAGATTGTTTAAAGTCTTCAAAAGATGCAGCAAGATCAGCGCAAGAAGGTTTCACTCTTTCTTTATCTTCCCCTTTGAAATTCTTTAATAAAAAGGAGATCTTGATTTAGATTTGTTATTTCTAGCTTTTAAGATTTGACTGTATCTAGTAAAGTACCCAAATTTGCCTTAAAAGACTAGTCATTACAGCCAAAATTGATTGATTGAGTCATCTACGATGATTATGTAACTGTTTGTTTATTTCAGGAAGCATGAAGTTGTTGACTAATTTTAGCTGCTAATTGAGGACTGAGTTATTTGATTATCAGTCATCTTCTAACCATATGAAGTTGTTGACTAATTTAGGCTGCTTTTTATTTAGAATATGTTATTTAGCAGAGTTGGAGAATTTGCATATGAAGGACTAAGTTATTTGATTTATCAGAAATTTTAGTAATCTCTTAACCATATGAAGTTGTTGACTAATTTAAGCTGCTATGTAAAGTATTTAGAAATGTAGGTAGGTAACTCATTAAACAGAGATGGATTAATTGCATATGGAGGACTAAGTTATTTTAGTAATCTTTAAGCATATTGCAAATTAACATACTTGTGAAAATGCCCTTGTGGGATAAATTGTTTTGTCTTTTTTGTGGGGCAGCATTCTATTTACTTTCCTTTCATAGTTTTGAAGTGTTCTTTATTTTCCTATGCTTTTCTTCCTTTACTGGATTCTGGACTTCTACTTCATGCGAGAACTTCTGTGTTAGTTTGAAATGTAATCTGACGTTGTAGTCCTTGGCTTGGGCCTCGTTTGACTCTGAAATAGTGTTTCGTAATTGTCTAGTCTGATTTTCAAATTGGAATGTATTGTCTATTCAAGTCATAAATTGATCCTTGATTCTCTTTATGTTACAACAGAAGTCTACTGATCTGAATATTATTGAAATTTCATCGACATATGCTTTGAGAATATCAAGCAACATGCAGATTTTTATCTTATATTTAGTTTGCCTATTAGTCAGTAGACTATGGTAAACATGTCTGATTTTTTGTTACTGATTGTACAGAGTTCCAAAGAAGTGGAGTTCTTCACCGAGTACGGTGATGCTAATAGGTATAAAATTTTGGAAGTTATAGGCAAGGGAAGTTATGGAGTAGTTTGTGCTGCAATTGACACTCATA</genome_strand>
        <mrna_strand>TTCAATTGGCCTCCTTGTTGCTCTCTCTCTCTTCTCCATCTTTCAAAACCCGAAAAAGGGTTACTTCTTTCTACACCCTTCGTTCATTTTCTGTTCATTTTTTTGTAGGATTTTAGGCTCAACTGATACTAATTTTGTGTATAAAAATCATACTGTTTTCTTCAAAAGTGGGGTTCGCTCTTTGTTAGTACGTTTCAATACGTTGTTGACGTCGGTGGGGCGAAGTGCTCTGCTGATTCTCTGATTTATTCCATTTGGGGTTGTTCAGATTTGTTTTATTTTTGGATATTTTTGATCTGATCTTCTGTATAAGATCAGGGGAACCTAGAGAAGAAAAGGGTACCTTCAGATATCCTCTTTTTTTGAATTTATTCGTTACCCAGATTGTTTAAAGTCTTCAAAAGATGCAGCAAGATCAGCGCATGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCCAAAGAAGTGGAGTTCTTCACCGAGTACGGTGATGCTAATAGGTATAAAATTTTGGAAGTTATAGGCAAGGGAAGTTATGGAGTAGTTTGTGCTGCAATTGACACTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-0K1fxY/lycopersicum_combined_unigene_seqs" ref_id="SGN-U324539" ref_strand="-" ref_description="SGN-U324539        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | pfkB-type carbohydrate kinase family protein, contains Pfam profile: PF00294 pfkB family carbohydrate kinase | chr1:5867639-5869323 FORWARD | Aliases: F20D23.14, F20D23_14(evalue: 5e-26, score=115) genbank/nr: gi|34910896|ref|NP_916795.1| P0003E08.15 [Oryza sativa (japonica cultivar-group)] gi|15289851|dbj|BAB63548.1| P0003E08.15 [Oryza sativa (japonica cultivar-group)](evalue: 4e-25, score=119)">
      <seq>taaattcaggacatatgctgcagccatttcacttgatttagactgtatccgtgacccaaaataactatctgagttacattttcgggttctgagtctaaaagtccctttgnatttgttatagttacctgccctattgattttgcaaaatgtagtggtcctgacagacttttgcttggtgagtcataaatgtctggtgatggctttgcttctccatataaatatgatggattaatgcagtgttgtttgtggggctctggtttggtccaccgacctagtaggacattcctagttagatttagctacttttcctgatttcttgctcaatgtttggggtgtcacaaattacaatagatatctgtaaatttgtcactatatcaatttgattttgtggaatgatgtttccacgctcttttgtttcccagggagttaaccaggtccttgttaagcttggggccaatggatctgctcttttcaccaaaggagaggaacccttgcggcaacccattattaaagctgcaaaagtcattgatacaacaggagctggtgacacttttacagctgcttttgcagtggccctagtggagggtaaatctaaagaggaatgtttgagatttgctgctgcagccgcttctctatgtgttcaagtgaaaggagccattccaagcatgcctgaaaagagagcagtgttcaatcttcttcagtcagcttgaagacttggagtttcctttatcatctccttgtacaaaaaaataagaggttctcaagttgatgagttgaagttccggagtcttgattttcatgaagaggactgccgtggagcacttgttaacttcgggaagtagcactaatctgcatattttgctgatgatgctatccgcttgttaaatttgggattgaagatacagctctgaaatgattacttactctagctctctctttttcccgaagaacttctggtgtagcatagttttcgataaattattttttcttgtgcttctgtcatctcagctgataactaactccaggaagttggttagcatagctagtcctgtgtgccaggaaactaatgaagcagcagatgcacagtattttcgttaacgatggatcgctactgattgttgctggaaaaattgccagctttgaaaaacttgaatgatatgagcctcatgtttctgacagatttacttattagttttgctagtattcttgtgctttgtttttttgtattgtcattttcgagtttgatttcatgaagtgaaaatatatatatgttaactgatcatggttaagtaatagtcatgtatctattgatttgttgtaaatatctgatgctggtaaatattacgacctttacaacattaggtgcagatagtttaaattcaaactatctatatccatacactttttggttaccaaaaacttaataattacacccaaaattctataccaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0102J11-sylo5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0102J11.1" temp_strand="-" temp_description="C07HBa0102J11.1  AC210354.1 htgs_phase:3 submitted_to_sgn_as:C07HBa0102J11 upload_account_name:france">
        <position start="55865" stop="52869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55565" g_stop="54948" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="618" r_length="618" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54947" i_stop="54705" i_length="243">
            <donor d_prob="0.720" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54704" g_stop="54567" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="756" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54566" i_stop="53961" i_length="606">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.873" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53960" g_stop="53911" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="757" r_stop="806" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53910" i_stop="53814" i_length="97">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.678" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53813" g_stop="53163" g_length="651"/>
          <reference_exon_boundary r_type="cDNA" r_start="807" r_stop="1457" r_length="651" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0102J11.1" gen_strand="-" ref_id="SGN-U324539" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0102J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U324539" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="55565" e_stop="54948"/>
          <exon e_start="54704" e_stop="54567"/>
          <exon e_start="53960" e_stop="53911"/>
          <exon e_start="53813" e_stop="53163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATTCAGGACATATGCTTGCAG-CATTTCACTTGATTTAGACTGTATCCGTGACCCAAAATAACTATCTGAGTTACATTTTCGGGTTCTGAGTCTAAAAGTCCCTTTTGATTTGTTATAGTTACCTGCCCTATTGATTTTGCAAAATGTAGTGGTCCTGACAGACTTTTGCTTGGTGAGTCATAAATGTCTGGTGATGGCTTTGCTTCTCCATATAAATATGATGGATTAATGCAGTGTTGTTTGTGGGGCTCTGGTTTGGTCCACCGACCTAGTAGGACATTCCTAGTTAGATTTAGCTACTTTTCCTGATTTCTTGCTCAATGTTTGGGGTGTCACAAATTACAATAGATATCTGTAAATTTGTCACTATATCAATTTGATTTTGTGGAATGATGTTTCCACGCTCTTTTGTTTCCCAGGGAGTTAACCAGGTCCTTGTTAAGCTTGGGGCCAATGGATCTGCTCTTTTCACCAAAGGAGAGGAACCCTTGCGGCAACCCATTATTAAAGCTGCAAAAGTCATTGATACAACAGGAGCTGGTGACACTTTTACAGCTGCTTTTGCAGTGGCCCTAGTGGAGGGTAAATCTAAAGAGGAATGTTTGAGATTTGCTGGTAAGCATGCTGGTGCTTTCTCCCAATTTTGGTTTCAGCTTCATTAGTCTTATATTTTTTCTTCAAACATGTTTCGTTAAGCTTTTTTCTTGAGCTGAGGGTCTATCAGAGACAACCTCTCTATCGCACAAAGGTAGGATGAGGTCTGCGTACATGTCACCTTCCCCAGACCTCACTCGTGGGATCATATTGGGTATGTTGTTGTTGTAGTTACCTATCTAATAAAGGCTTGTGCATTTACAGCTGCAGCCGCTTCTCTATGTGTTCAAGTGAAAGGAGCCATTCCAAGCATGCCTGAAAAGAGAGCAGTGTTCAATCTTCTTCAGTCAGCTTGAAGACTTGGAGTTTCCTTTATCATCTCCTTGTACAAAAAAATAAGAGGTACTGTTCTAAATATTCAGAACTTCGGATTATATTAGTTGGTGCTTTACCTTAATCATAGGAGGAAAAAAAAACTGTTCAAAAGGACAGTCTCCTACGAAAAAGGGAACGAGAGTGGACTCAAGGGTATCTAGATGAAGTTCCAGTTGACAATTACTCCCTTCATTTCAATTTGTTTGTCTTACATTCCTTTTCTAATCCGTATCAAGAAAAAATGTCTTCTTTTTTTTGCAACTCTTTGATTCCAACTTCCCACATAACATGTTTAAGACCATAAGATTAAAGGCCAATTTGGTACGTTCAAATCAAAACCAAACAAACAAGCTGAAATGGAGGAATACATAATAAGATAATGTTGTCTTCACAATCTCGGCATATACATAGGTTTCCCAAATATTTTGAAACCAAAAATTAGAATGTAGATGAAAGATGAACAACAAACCAAATCTGACTTTGTTATAAACTGTGATAGTAATGAAATTTGAATGTCCCTCTTCCCTCAAATATGCCTCTGCTGTATGTGGTTCAATCAAGTTCCAGTTTCTGGTTATTGAAACACTATTGCTTCGCGTTGGTGAAAAAATTCCTTTATTTCTTGACATGAAGGTTCTCAGGTTGATGAGTTGAAGTTCCGGAGTCTTGATTTTCATGAAGAGGTGAGCAAATACTATCGATTTGCTCTTTTCTTTTGGTAAAACTTTTTCGACTTCCCATCTTCTAAACCACCATACTTGTGCATCCAATATACTTCAGGACTGCCGTGGAGCACTTGTTAACTTCGGGAAGTAGCACTAATCTGCATATTTTGCTGATGATGCTATCCGCTTGTTAAATTTGGGATTGAAGATACAGCTCTGAAATGATTACTTACTCTAGCTCTCTCTTTTTCCCGAAGAACTTCTGGTGTAGCATAGTTTTCGATAAATTATTTTTTCTTGTGCTTCTGTCATCTCAGCTGATAACTAACTCCAGGAAGTTGGTTAGCATAGCTAGTCCTGTGTGCCAGGAAACTAATGAAGCAGCAGATGCACAGTATTTTCGTTAACGATGGATCGCTACTGATTGTTGCTGGAAAAATTGCCAGCTTTGAAAAACTTGAATGATATGAGCCTCATGTTTCTGACAGATTTACTTATTAGTTTTGCTAGTATTCTTGTGCTTTGTTTTTTTGTATTGTCATTTTCGAGTTTGATTTCATGAAGTGAAAATATATATATGTTAACTGATCATGGTTAAGTAATAGTCATGTATCTATTGATTTGTTGTAAATATCTGATGCTGGTAAATATTACGACCTTTACAACATTAGGTGCAGATAGTTTAAATTCAAACTATCTATATCCATACACTTTTTGGTTACCAAAAACTTAATAATTACACCCAAAATTCTATACCTAACCTAAA</genome_strand>
        <mrna_strand>TAAATTCAGGACATATGCT-GCAGCCATTTCACTTGATTTAGACTGTATCCGTGACCCAAAATAACTATCTGAGTTACATTTTCGGGTTCTGAGTCTAAAAGTCCCTTTGNATTTGTTATAGTTACCTGCCCTATTGATTTTGCAAAATGTAGTGGTCCTGACAGACTTTTGCTTGGTGAGTCATAAATGTCTGGTGATGGCTTTGCTTCTCCATATAAATATGATGGATTAATGCAGTGTTGTTTGTGGGGCTCTGGTTTGGTCCACCGACCTAGTAGGACATTCCTAGTTAGATTTAGCTACTTTTCCTGATTTCTTGCTCAATGTTTGGGGTGTCACAAATTACAATAGATATCTGTAAATTTGTCACTATATCAATTTGATTTTGTGGAATGATGTTTCCACGCTCTTTTGTTTCCCAGGGAGTTAACCAGGTCCTTGTTAAGCTTGGGGCCAATGGATCTGCTCTTTTCACCAAAGGAGAGGAACCCTTGCGGCAACCCATTATTAAAGCTGCAAAAGTCATTGATACAACAGGAGCTGGTGACACTTTTACAGCTGCTTTTGCAGTGGCCCTAGTGGAGGGTAAATCTAAAGAGGAATGTTTGAGATTTGCTG...................................................................................................................................................................................................................................................CTGCAGCCGCTTCTCTATGTGTTCAAGTGAAAGGAGCCATTCCAAGCATGCCTGAAAAGAGAGCAGTGTTCAATCTTCTTCAGTCAGCTTGAAGACTTGGAGTTTCCTTTATCATCTCCTTGTACAAAAAAATAAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCAAGTTGATGAGTTGAAGTTCCGGAGTCTTGATTTTCATGAAGAG.................................................................................................GACTGCCGTGGAGCACTTGTTAACTTCGGGAAGTAGCACTAATCTGCATATTTTGCTGATGATGCTATCCGCTTGTTAAATTTGGGATTGAAGATACAGCTCTGAAATGATTACTTACTCTAGCTCTCTCTTTTTCCCGAAGAACTTCTGGTGTAGCATAGTTTTCGATAAATTATTTTTTCTTGTGCTTCTGTCATCTCAGCTGATAACTAACTCCAGGAAGTTGGTTAGCATAGCTAGTCCTGTGTGCCAGGAAACTAATGAAGCAGCAGATGCACAGTATTTTCGTTAACGATGGATCGCTACTGATTGTTGCTGGAAAAATTGCCAGCTTTGAAAAACTTGAATGATATGAGCCTCATGTTTCTGACAGATTTACTTATTAGTTTTGCTAGTATTCTTGTGCTTTGTTTTTTTGTATTGTCATTTTCGAGTTTGATTTCATGAAGTGAAAATATATATATGTTAACTGATCATGGTTAAGTAATAGTCATGTATCTATTGATTTGTTGTAAATATCTGATGCTGGTAAATATTACGACCTTTACAACATTAGGTGCAGATAGTTTAAATTCAAACTATCTATATCCATACACTTTTTGGTTACCAAAAACTTAATAATTACACCCAAAATTCTATACCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-0K1fxY/lycopersicum_combined_unigene_seqs" ref_id="SGN-U344200" ref_strand="+" ref_description="SGN-U344200        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | pfkB-type carbohydrate kinase family protein, contains Pfam profile: PF00294 pfkB family carbohydrate kinase | chr1:5867639-5869323 FORWARD | Aliases: F20D23.14, F20D23_14(evalue: 3e-49, score=192) genbank/nr: Similar(evalue: 2e-47, score=192)">
      <seq>gcacgagacaatttcagctaaaacaggtcaaacattggctggtggaaagggggctaatcaagctgtttgtggtggacagcttgattatccaactttttttattggtcaagttggtgaagatgctcatgggagattgattactgaagctttagagagtggtggggtttgtgtggatcaccttactactgttgctaatgctccaactggaaatgctgtggtgatgcttcagtctgatggggagaattcaattattattgttggtggtgcaaacatgtcttgctggcctgaagaattgtcatatgaggatttggagattgtgagaagtgcagggattgtgttgctccaaagggaaattccagattttgttaacatccaagttgcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0102J11-sylo5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0102J11.1" temp_strand="-" temp_description="C07HBa0102J11.1  AC210354.1 htgs_phase:3 submitted_to_sgn_as:C07HBa0102J11 upload_account_name:france">
        <position start="57850" stop="56871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57554" g_stop="57171" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0102J11.1" gen_strand="-" ref_id="SGN-U344200" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0102J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57554" e_stop="57171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGGAAACAATTTCAGCTAAAACAGGTCAAACATTGGCTGGTGGAAAGGGGGCTAATCAAGCTGTTTGTGGTGGAAAGCTTGATTATCCAACTTTTTTTATTGGTCAAGTTGGTGAAGATGCTCATGGGAGATTGATTACTGAAGCTTTAGAGAGTGGTGGGGTTTGTGTGGATCACCTTACTACTGTTGCTAATGCTCCAACTGGAAATGCTGTGGTGATGCTTCAGTCTGATGGGGAGAATTCAATTATTATTGTTGGTGGTGCAAACATGTCTTGCTGGCCTGAAGAATTGTCATATGAGGATTTGGAGATTGTGAGAAGTGCAGGGATTGTGTTGCTCCAAAGGGAAATTCCAGATTTTGTTAACATCCAAGTTGCAAA</genome_strand>
        <mrna_strand>GCACGAGACAATTTCAGCTAAAACAGGTCAAACATTGGCTGGTGGAAAGGGGGCTAATCAAGCTGTTTGTGGTGGACAGCTTGATTATCCAACTTTTTTTATTGGTCAAGTTGGTGAAGATGCTCATGGGAGATTGATTACTGAAGCTTTAGAGAGTGGTGGGGTTTGTGTGGATCACCTTACTACTGTTGCTAATGCTCCAACTGGAAATGCTGTGGTGATGCTTCAGTCTGATGGGGAGAATTCAATTATTATTGTTGGTGGTGCAAACATGTCTTGCTGGCCTGAAGAATTGTCATATGAGGATTTGGAGATTGTGAGAAGTGCAGGGATTGTGTTGCTCCAAAGGGAAATTCCAGATTTTGTTAACATCCAAGTTGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-0K1fxY/lycopersicum_combined_unigene_seqs" ref_id="SGN-U345782" ref_strand="+" ref_description="SGN-U345782        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | transcription factor-related, contains Pfam profile: PF00017 Src homology domain 2; similar to transcription factor (Danio rerio) (GI:3687402) | chr1:5824844-5828226 FORWARD | Aliases: F20D23.26, F20D23_26(evalue: 3e-19, score=92) genbank/nr: gi|42562111|ref|NP_173147.2| transcription factor-related [Arabidopsis thaliana] (evalue: 2e-17, score=92)">
      <seq>ctacatcaaggagctggccccaccctgacgctggtaacttggtcgtcacttatgttggaagtgactacaccattcaccacaggcttatatccctcgagtccatttacagttctggggtcaagggaacgacgataaggccaattcaagacatgctgcttgaacagcctgagctcangcgactcggaaggattgtgagaagcttgaggtcactcaagatttatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0102J11-sylo5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0102J11.1" temp_strand="+" temp_description="C07HBa0102J11.1  AC210354.1 htgs_phase:3 submitted_to_sgn_as:C07HBa0102J11 upload_account_name:france">
        <position start="71182" stop="72241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71482" g_stop="71590" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71591" i_stop="71748" i_length="158">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.126" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71749" g_stop="71826" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="187" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71827" i_stop="71904" i_length="78">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.459" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71905" g_stop="71941" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="223" r_length="36" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0102J11.1" gen_strand="+" ref_id="SGN-U345782" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>224</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0102J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71482" e_stop="71590"/>
          <exon e_start="71749" e_stop="71826"/>
          <exon e_start="71905" e_stop="71941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCAAGGAGCTGGCCCCACCCTGACGCTGGTAACTTGGTCGTCACTTATGTTGGAAGTGACTACACCATTCACCACAGGCTTATATCCCTCGAGTCCATTTACAGGTAAATGTACTATTTCTTCTTGTTCTCTTTCTTAACCTTTCACCTATTTCCATTGCATTGTAAGATTTTCCCCGTGGAAGAAAGTTTGGGAACATGTGAGACATACAGAGTTGATCTCAGCATCACTAAGAGGGTCCTTTTTCTATTGTCCACTGTAGTTCTGGGGTCAAGGGAACGACGATAAGGCCAATTCAAGACATGCTGCTTGAACAGCCTGAGCTCAGGCGACTCGGAAGGCAAGATTTCTAACTCTTTTGATCATCCATTCATCCAGCTTACTCTTTAAGTAATTGTTAGAAACCTTCAAACCGCAGGATTGTGAGAAGCTTGTAGGTCACTCAAGATTTATAC</genome_strand>
        <mrna_strand>CTACATCAAGGAGCTGGCCCCACCCTGACGCTGGTAACTTGGTCGTCACTTATGTTGGAAGTGACTACACCATTCACCACAGGCTTATATCCCTCGAGTCCATTTACAG..............................................................................................................................................................TTCTGGGGTCAAGGGAACGACGATAAGGCCAATTCAAGACATGCTGCTTGAACAGCCTGAGCTCANGCGACTCGGAAG..............................................................................GATTGTGAGAAGCTTG-AGGTCACTCAAGATTTATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-0K1fxY/lycopersicum_combined_unigene_seqs" ref_id="SGN-U330688" ref_strand="+" ref_description="SGN-U330688        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT1G78530.1 | Symbol: None | protein kinase family protein, contains protein kinase domain, Pfam:PF00069 | chr1:29544167-29545574 REVERSE | Aliases: T30F21.14, T30F21_14 (evalue: 2e-116, score=415) genbank/nr: gi|15218397|ref|NP_177974.1| protein kinase family [Arabidopsis thaliana] gi|25287623|pir||G96813 hypothetical protein T30F21.14 [imported] - Arabidopsis thaliana gi|4836880|gb|AAD30583.1| putative protein kinase [Arabidopsis thaliana](evalue: 2e-114, score=415)">
      <seq>tttttttttctttggtttttttaaaaaaaatatttgctggggtaccttcttgatgtctgcttcaagaaaatgagcactttctgcaataaagtttcaaggaagatattgttctgttgggaatatcagtagctttggttgttgaatctcgtttaaagctgagaggccaaaagtctaaagttattgagtattcagaactaaatgggaaattctaaaaatattgctctctatgtaacaatatgtgtgatttcttttatcatctcgaagattattatgacaatcgtctgttaccgtagatggaagagaaagcaaatggttgttcaagacagcttatctggtggaaaactagtgatgtttaagtcaccgaaaatgaacacgttgaagtccaacatgttcttgaagaggaccatgaagctgactaacaaagatattataggatcaggaggctatggaacagtctataaactgacaattaacgaatcaatttctttcgcggtaaagaggttaaacagaataagtgcagaacaagacagaggttttgaaagagagttggaggcaatgggggacataaagcatcgaaatatagtgacacttcatggatactacagtacaacgcagtataaccttctgatatatgagcttatgactaatggaagtttagatgaagtacttcatggaaaatcggctgccaggaaggttttggattggcctacaaggtacaaaatagcagtaggagcagcaagaggattatcatatctacatcacgattgcatccctcacatcatccacagagatataaagtcaagtaatatcttgttggatcataacatggaggctcgagtatctgattttggactagccactctgatggagccagataagacgcacgtttcaactttggtagctggaacttttggatatttggctcctgaatattttgacaccggaaaagcaacagtcaaaggagatgtttacagctttggagttgtcttactggaacttctaactgggaaaaagccatcagatgaagcatttttggaggaaggaaccagacttgtaacttgggtaagcttgtagttcaccttttttcttttttatcctagctgctttcgagctgtcattaattcggtcagttgatactgttctgctttacaggtgaagacagttgttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0102J11-sylo5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0102J11.1" temp_strand="+" temp_description="C07HBa0102J11.1  AC210354.1 htgs_phase:3 submitted_to_sgn_as:C07HBa0102J11 upload_account_name:france">
        <position start="73180" stop="76096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73477" g_stop="73574" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73575" i_stop="73922" i_length="348">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73923" g_stop="73973" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="149" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73974" i_stop="74275" i_length="302">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74276" g_stop="74318" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="192" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74319" i_stop="74395" i_length="77">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.262" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74396" g_stop="74537" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="334" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74538" i_stop="74616" i_length="79">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74617" g_stop="74955" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="673" r_length="339" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="74956" i_stop="75224" i_length="269">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75225" g_stop="75479" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="674" r_stop="928" r_length="255" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75480" i_stop="75555" i_length="76">
            <donor d_prob="0.896" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="75556" g_stop="75796" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="929" r_stop="1169" r_length="241" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0102J11.1" gen_strand="+" ref_id="SGN-U330688" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1169</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0102J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U330688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73477" e_stop="73574"/>
          <exon e_start="73923" e_stop="73973"/>
          <exon e_start="74276" e_stop="74318"/>
          <exon e_start="74396" e_stop="74537"/>
          <exon e_start="74617" e_stop="74955"/>
          <exon e_start="75225" e_stop="75479"/>
          <exon e_start="75556" e_stop="75796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTTTTTCTTTGGTTTTTTTAAAAAAAATATTTGCTGGGGTACCTTCTTGATGTCTGCTTCAAGAAAATGAGCACTTTCTGCAATAAAGTTTCAAGGTGAAGTCTTATTCTAACTTCTTAAAAGCTTTGTGTGTGTTTGAACTACTCTTCTTGATTCTAGTCGCTCTCCGTTTGATCATAGATTTTGAAGTTTAAAATTTGAGTTGTTGAAGTGGTGTTTGTGAAAAAAAAAATTTGAACATTTCACGGCCAAAAAAGATATTTGAAAATGATTTTTCTAAAACTACTCTCAAAATCTATGGTCAAACGCTAAATAAATTTTGAAGTCGTGTGAACGATATTATTGTCTTTTTTCTGAAGGCCTAGATAGTTATTTTTTTTCTTAGAAGATGGTTCTTTTTTTGGACTAATGACTTGCTTGTTCATTACTGTGGACTGTTATAGGAAGATATTGTTCTGTTGGGAATATCAGTAGCTTTGGTTGTTGAATCTCGTGTAAGTTAAGTTGTGGTTGTATTTTCTGCAAGTGGAATGTAGGATCTTTAGGTTGTGTGTTAAGATTGACCCTCGAGTGAAAAAACAGAAGGAAGATTGATTGTAGGGACGAAAATCAGCCTTAGTGATATCCAAAAACGCCAAGTGAAAAGGCGTTGCTCAAAGTAAAAAAAAAAAAATTTAGTCCAGGAATAGTTAAAACCTGCAGGAAGTTTAAACAGCTCCTATTCACTAACAATCTGTTGTTCCTTTGTGTTTTTCTTCTGGTACACCTGATTAACAACATTTTATGTAATTCACAGTTAAAGCTGAGAGGCCAAAAGTCTAAAGTTATTGAGTATTCAGGTACCTGTTTTTTTTACTCTATATTTCTGCTCAAATGAACAGTGTGTTGGTTTCTAACTTGGTCTAACTACTTGCAGAACTAAATGGGAAATTCTAAAAATATTGCTCTCTATGTAACAATATGTGTGATTTCTTTTATCATCTCGAAGATTATTATGACAATCGTCTGTTACCGTAGATGGAAGAGAAAGCAAATGGTTGTTCAAGACAGCTTATCTGGTATGATATGATGTTCAGTATTCAGAATTCGATAGGTTGGATCAAGAATATCTTATGTTTTTGTTATGTCCATATCCAGGTGGAAAACTAGTGATGTTTAAGTCACCGAAAATGAACACGTTGAAGTCCAACATGTTCTTGAAGAGGACCATGAAGCTGACTAACAAAGATATTATAGGATCAGGAGGCTATGGAACAGTCTATAAACTGACAATTAACGAATCAATTTCTTTCGCGGTAAAGAGGTTAAACAGAATAAGTGCAGAACAAGACAGAGGTTTTGAAAGAGAGTTGGAGGCAATGGGGGACATAAAGCATCGAAATATAGTGACACTTCATGGATACTACAGTACAACGCAGTATAATCTTCTGATATATGAGCTTATGACTAATGGAAGTTTAGATGAAGCACTTCATGGTATATGTTTATGTCTGTTTCTTATTGTCTAAGTCTATGTTGCTCGAACTCTCAAAAATGTTCCGACCCTCCATAAATGCTGTACTTTTGGAGGACCTGACTTGCCTACAGAGGTACTTTTTGGAGTCCAAGCAACATAGCTCTAAGGATGGTCATTCTTTTAAGCTTATTTCAGCTTCTGCTGATGCTAGAATCAGAGATGCACAATAAAGACCTATCAAGTGTTTGATATACAGATGAACTTTAAGAATGGTAACATCATAATGCAGGAAAATCGGCTGCCAGGAAGGTTTTGGATTGGCCTACAAGATACAAAATAGCAGTAGGAGCAGCAAGAGGATTATCATATCTACATCACGATTGCATCCCTCACATCATCCACAGAGATATAAAGTCAAGCAATATCTTGTTGGGTCATAACATGGAGGCTCGAGTATCTGATTTTGGACTAGCCACTCTGATGGAGCCAGATAAGACGCACGTTTCAACTTTGGTAGCTGGAACTTTTGGATATTTGGCTCCTGGTATGTTTTTATTAGACCATCAGAAGACTCGAATCTGTGTTTGGAAAACTATCAATTACATTATGGTCTTTTGCAGAATATTTTGACACCGGAAAAGCAACAGTCAAAGGAGATGTTTACAGCTTTGGAGTTGTCTTACTGGAACTTCTAACTGGGAAAAAGCCATCAGATGAAGCATTTTTGGAGGAAGGAACCAGACTTGTAACTTGGGTAAGCTTGTAGTTCACCTTTTTTCTTTTTTATCCTAGCTGCTTTCGAGCTGTCATTAATTCGGTCAGTTGATACTGTTCTGCTTTACAGGTGAAGACAGTTGTTCA</genome_strand>
        <mrna_strand>TTTTTTTTTCTTTGGTTTTTTTAAAAAAAATATTTGCTGGGGTACCTTCTTGATGTCTGCTTCAAGAAAATGAGCACTTTCTGCAATAAAGTTTCAAG............................................................................................................................................................................................................................................................................................................................................................GAAGATATTGTTCTGTTGGGAATATCAGTAGCTTTGGTTGTTGAATCTCGT..............................................................................................................................................................................................................................................................................................................TTAAAGCTGAGAGGCCAAAAGTCTAAAGTTATTGAGTATTCAG.............................................................................AACTAAATGGGAAATTCTAAAAATATTGCTCTCTATGTAACAATATGTGTGATTTCTTTTATCATCTCGAAGATTATTATGACAATCGTCTGTTACCGTAGATGGAAGAGAAAGCAAATGGTTGTTCAAGACAGCTTATCTG...............................................................................GTGGAAAACTAGTGATGTTTAAGTCACCGAAAATGAACACGTTGAAGTCCAACATGTTCTTGAAGAGGACCATGAAGCTGACTAACAAAGATATTATAGGATCAGGAGGCTATGGAACAGTCTATAAACTGACAATTAACGAATCAATTTCTTTCGCGGTAAAGAGGTTAAACAGAATAAGTGCAGAACAAGACAGAGGTTTTGAAAGAGAGTTGGAGGCAATGGGGGACATAAAGCATCGAAATATAGTGACACTTCATGGATACTACAGTACAACGCAGTATAACCTTCTGATATATGAGCTTATGACTAATGGAAGTTTAGATGAAGTACTTCATG.............................................................................................................................................................................................................................................................................GAAAATCGGCTGCCAGGAAGGTTTTGGATTGGCCTACAAGGTACAAAATAGCAGTAGGAGCAGCAAGAGGATTATCATATCTACATCACGATTGCATCCCTCACATCATCCACAGAGATATAAAGTCAAGTAATATCTTGTTGGATCATAACATGGAGGCTCGAGTATCTGATTTTGGACTAGCCACTCTGATGGAGCCAGATAAGACGCACGTTTCAACTTTGGTAGCTGGAACTTTTGGATATTTGGCTCCTG............................................................................AATATTTTGACACCGGAAAAGCAACAGTCAAAGGAGATGTTTACAGCTTTGGAGTTGTCTTACTGGAACTTCTAACTGGGAAAAAGCCATCAGATGAAGCATTTTTGGAGGAAGGAACCAGACTTGTAACTTGGGTAAGCTTGTAGTTCACCTTTTTTCTTTTTTATCCTAGCTGCTTTCGAGCTGTCATTAATTCGGTCAGTTGATACTGTTCTGCTTTACAGGTGAAGACAGTTGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-0K1fxY/lycopersicum_combined_unigene_seqs" ref_id="SGN-U327913" ref_strand="+" ref_description="SGN-U327913        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | chalcone-flavanone isomerase-related, low similarity to GI:499036 (Vitis vinifera) | chr1:19980083-19981623 REVERSE | Aliases: F22G10.11(evalue: 1e-63, score=239) genbank/nr: gi|21536962|gb|AAM61303.1| chalcone isomerase, putative [Arabidopsis thaliana](evalue: 3e-62, score=240)">
      <seq>gccatttcagtatggatttcaacatccacacccacaaagatcactgcttttaactccatacccagaatttgttatcctcttaaactttcaagaaatggtatttatcccttatctacatttgagagaaatggccaatacgaacaaaatctcacaatcaaagctgctgcctcctcttctgttggaagtgcagaatacacagaagaaccagctactaaggtgaaatttcaaagatcattgagcttacctggttgctctacttccttgtcattgcttggaactggatacagggaaaagatttttgcaattattggtgtcaaggtctatgctgcaggcctctatgtcaatgactccgtctttagtagcttagatgcctggcgaggacgttctgctgcagatattcaacaggatccttccttgttcaacaagatctttgaagcggatttggagaaatctttacttattgtgctggtcagagatgttgatggtaaaactttctgggatgccttagatgaagccatctctccgagaatcaaatcccctactgccgatgataagtctgctctttctacattccgcggtgtctttcaagggaaacctcttaagaaagaaacttccatattcttgacttggattgacccaaataaaatgcttgtttcactctcttttgatggaatgccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0102J11-sylo5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0102J11.1" temp_strand="-" temp_description="C07HBa0102J11.1  AC210354.1 htgs_phase:3 submitted_to_sgn_as:C07HBa0102J11 upload_account_name:france">
        <position start="79043" stop="75980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78743" g_stop="78566" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78565" i_stop="77141" i_length="1425">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.461" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77140" g_stop="77039" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="280" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77038" i_stop="76905" i_length="134">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.806" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76904" g_stop="76749" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="436" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76748" i_stop="76658" i_length="91">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76657" g_stop="76443" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="651" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76442" i_stop="76309" i_length="134">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76308" g_stop="76280" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="680" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0102J11.1" gen_strand="-" ref_id="SGN-U327913" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0102J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78743" e_stop="78566"/>
          <exon e_start="77140" e_stop="77039"/>
          <exon e_start="76904" e_stop="76749"/>
          <exon e_start="76657" e_stop="76443"/>
          <exon e_start="76308" e_stop="76280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATTTCAGTATGGATTTCAACATCCACACCCACAAAGATCACTGCTTTTAACTCCATACCCAGAATTTGTTATCCTCTTAAACTTTCAAGAAATGGTATTTATCCCTTATCTACATTTGAGAGAAATGGCCAATACGAACAAAATCTCACAATCAAAGCTGCTGCCTCCTCTTCTGGTAATAATTCAACTGATTCTTGTAACAAGTTTAAGTCTTTATGTCTAACTTACTATTAGTAGATTTTAAGCTGAATTTTACATCTTTTGTGCAAAAGTGGAAGGAAACCCTTTAAACTGAATACTTACTAAATTTCAGATTGTGGGTATTCTTGGTTTCTTGAATTTTTACTAAATGTTTATACAAATCTGATGTTTGCCATAATTTAGTGAGAAAACCCTGTGTGGAGTATCTACTGTCAATAAAGGTTTTAGCTTTATAATGGTATCTATTGTTAAATCGACTTTAGGCCTAAATCAACACCAAAAGCTAGCTCATGAGGAGAGGATTGACCATGTCATATAAAGAGACCACCCATTCCATTAACCTCTGACGTGGAACTTCTTGACATCCCTTGGGTGGACATCTAGACCGTGAACGATTTAATATGGGGTTCCATTGTCATGAAATAAGAATTTAATTGGGTCCTGCTCTGATATGAAATGGACTTAGGCCTAGATCCACGAGACGTAATTTGCAGTTATTATATTCAAGTCTAAGAAATGTTCACTGAATCAAAGATGGTATGTAAGGAAAAGATTTGATCTTGGCATAAATATATTTGAGATGCTGGTCTGTTTAGAGTCCTTCACAGGACCAGTGCATAACGGGAGCTTAGTGCACCGAGCTGCCTTTTGTTTTTAGAGTTCTCACCATTTTTTTCTATTGTAATGGCCATCTTTTTTTGTTGAAACTGCCTTTAGCATCTCTTTTATCTGGTTTACTAACCAATAAAAAGAAAAGTTAGTATGGAAGAAAAGATTTGATCTTGGCACAAATGTAGCCAAATTGCTGGTTTATTTAGAATTCTTCGCCTACACAATTTTGTTTTGTAATGACGATCTGTTTTGGTTGCAACTGACCTCCAGCATTCTCATTTTGCTGGTTTACTAATGAAAATTGTTGATTACCGATATAAAATTAAAGATGGTATGGAAGAAAGATTTGATCTTGGCACAAATGCAGTTGAATTGCTGGTTTGTTGAGAGTTCTTCGCCTACTTGAATTATTTGAAGACTTTAGATTCGTTCTGATTAGATGTTAGGAAGGACCCTCAAGCTATGAGAGTAGAATTAAACAAAGTCAGAATTCTGGAGTGGCAAAAAACCATCAAATAGGTAGCTTAAATAGTCTTTTAATCCACATTTAACACGTAAATACTGCGTCATCATATAGTTTAATGTTTCAGTTCAGAAAGACAGGATTCAACTAGCAAAATACTCTTTGACTTGATCTTGCTATTTTTAATCCTTAGTGCTCACTTCTTACATAAAGCAAGTGGATTCATGTTTCTACACTATGGCTTCATGAAATAAGGAAGACACTTGATCATATCTTTATTTTTGTCTGTGAGAGCTGACGACTTGGCATTTTTCGTGGATTCAGTTGGAAGTGCAGAATACACAGAAGAACCAGCTACTAAGGTGAAATTTCAAAGATCATTGAGCTTACCTGGTTGCTCTACTTCCTTGTCATTGCTTGGAACTGGTTAGCTTCAAATCAATCAATAATCTTTCCCAATAATTTAAGAACAAATTTCAATTATTAGTTTATCTGCCTCAAGTTCTTTCAGATGGTTATGTTCTATGCTTATTTTTGCTGCTCTTCCAACAAAATTTTAGGATACAGGGAAAAGATTTTTGCAATTATTGGTGTCAAGGTCTATGCTGCAGGCCTCTATGTCAATGACTCCGTCTTTAGTAGCTTAGATGCCTGGCGAGGACGTTCTGCTGCAGATATTCAACAGGATCCTTCCTTGTTCAACAAGATCTTTGAAGGTGAGTCGGCAATGCTTAATTGTTTGACTGGTGAGATGGGGAGGAGATCATATCATCTAAGTGATGCTAAAAATGATTCTATGAATTGCAGCGGATTTGGAGAAATCTTTACTTATTGTGCTGGTCAGAGATGTTGATGGTAAAACTTTCTGGGATGCCTTAGATGAAGCCATCTCTCCGAGAATCAAATCCCCTACTGCCGATGATAAGTCTGCTCTTTCTACATTCCGCGGTGTCTTTCAAGGGAAACCTCTTAAGAAAGAAACTTCCATATTCTTGACTTGGATTGACCCAAATAAAATGCTTGTAAGTATGCAGTTTATTTACATTATTCTCTTAAAGCCTAGATTATATCAACTTCAGGCATCAAATGTGGCTTTTGTTTTCTTCTTAGCTTTCTTAGTTCTAATTTGTTGCTCTTTTTTATGGAAATCTTAAAGGTTTCACTCTCTTTTGATGGAATGCCTTC</genome_strand>
        <mrna_strand>GCCATTTCAGTATGGATTTCAACATCCACACCCACAAAGATCACTGCTTTTAACTCCATACCCAGAATTTGTTATCCTCTTAAACTTTCAAGAAATGGTATTTATCCCTTATCTACATTTGAGAGAAATGGCCAATACGAACAAAATCTCACAATCAAAGCTGCTGCCTCCTCTTCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAAGTGCAGAATACACAGAAGAACCAGCTACTAAGGTGAAATTTCAAAGATCATTGAGCTTACCTGGTTGCTCTACTTCCTTGTCATTGCTTGGAACTG......................................................................................................................................GATACAGGGAAAAGATTTTTGCAATTATTGGTGTCAAGGTCTATGCTGCAGGCCTCTATGTCAATGACTCCGTCTTTAGTAGCTTAGATGCCTGGCGAGGACGTTCTGCTGCAGATATTCAACAGGATCCTTCCTTGTTCAACAAGATCTTTGAAG...........................................................................................CGGATTTGGAGAAATCTTTACTTATTGTGCTGGTCAGAGATGTTGATGGTAAAACTTTCTGGGATGCCTTAGATGAAGCCATCTCTCCGAGAATCAAATCCCCTACTGCCGATGATAAGTCTGCTCTTTCTACATTCCGCGGTGTCTTTCAAGGGAAACCTCTTAAGAAAGAAACTTCCATATTCTTGACTTGGATTGACCCAAATAAAATGCTT......................................................................................................................................GTTTCACTCTCTTTTGATGGAATGCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-0K1fxY/lycopersicum_combined_unigene_seqs" ref_id="SGN-U316241" ref_strand="+" ref_description="SGN-U316241        Tomato 200607 #1 [30 ESTs aligned] arabidopsis/peptide: | Symbol: None | solanesyl diphosphate synthase (SPS), identical to solanesyl diphosphate synthase (Arabidopsis thaliana) GI:19911233; contains Pfam profile PF00348: Polyprenyl synthetase | chr1:29540178-29542310 REVERSE | Aliases: T30F21.15, T30F21_15(evalue: 2e-149, score=526) genbank/nr: solanesyl(evalue: 5e-161, score=571)">
      <seq>aattttaggagttgaaacacagcccaactgtctttttcttccattttctgtcacttaatcagaccaaagactccattttttatgtggttcttttttatccactcaattatttcttcttgggacaggatataaaagcacacccaagtgttcaaattgtttccatagtagttttctgttcttttttgcctattggggtgtcgaaaaaagcaatcttgaagcattgcaaggcaaaaaatttggtgatttagctaagtgggtgttacaaagatgatgtctgtgacttgccataatcttgaaattgggagaaccccattggagtctttggcttgtggctgttctttttcaaagggtgttttgagaaatgtaagtagaagattcagtgggaagaagttgttgtcttgcagacaagaatttgggcgtatttcaactaaggcttcacttactgggttggcaccagttttggatttgaataagtcagaaaaacctatttcattgactaatgtttttgaagtggttgcggatgacctacttacgttaaacaagaacttgcataatattgttggtgcagagaacccagttttaatgtctgcagctgagcagatttttggtgctggtggcaaaagggtgagacctgctttagtgttcctagtgtcaagggccacagcagaaatgtctggcttaaaggaactcaccacaaatcacagaaggttagctgaaatcattgaaatgatccatactgcaagcttgatacatgatgacgtgttagatgaaagtgacacacgaagaggaaaggagactattcaccaattatatggtactagagtggcagtactggctggtgattttatgtttgcacagtcgtcctggtacctagctaaccttgaaaaccttgaagtcataaagctcatcagtcaggttattaaagactttgcaagtggtgaaataaagcaggcctctaacttgttcgactgtgatgttggactggatgaatatttgctcaagagttactataaaacggcctccttgattgctgcaagcaccaaaggagctgccattttcagtgaagttggcagtgatattagtgaacaaatgtttcaatatgggaggaatcttggtttatcgttccagattgttgatgacatattggacttcacacaatcagccgcacaactgggaaagccagctggaagtgacttagccaagggaaaccttactgcaccagtactttttgcattagagaaagagccaaaccttaggaatataatcgaatcagaatttcacgatgctggttctctcgaggaggccatcaatctggtgaaaagctgtgggggaattcaacgagcacaagatttggcaaaggagaaagctgatttagcaatgcagaacctaaaatgccttccatctagtccttttcaagcagcacttgaggaaatcgtgaagtataatctggagagaattgaatagacgaaaacaaaggacgaaactatacaactttggtttattattctctgaaagctcttcatatctaacaatatctggagcacagagtagaagctattactatagtttgaatggcaacaacgatcagaacgaaagtgcttcactatgttcatatattatacccatacaggttgtaattttcagttcctaatacagcaatatggtgttccagcattctttataatttggctaataaattgtcaaatttcaactgttgttgtacactaaagaaatttcacattacaaataatgtcatgtattagtatttactattggctttcttggatgaacatatatgttataaattgataatacaataaacatattacaccttaaaaaaaaaaaaaaaaaaactcgagactagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0102J11-sylo5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0102J11.1" temp_strand="+" temp_description="C07HBa0102J11.1  AC210354.1 htgs_phase:3 submitted_to_sgn_as:C07HBa0102J11 upload_account_name:france">
        <position start="91437" stop="96626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91737" g_stop="92181" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92182" i_stop="92283" i_length="102">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92284" g_stop="92393" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="555" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92394" i_stop="93536" i_length="1143">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93537" g_stop="93664" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="683" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93665" i_stop="93752" i_length="88">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.761" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93753" g_stop="93856" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="684" r_stop="787" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93857" i_stop="95177" i_length="1321">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95178" g_stop="95305" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="788" r_stop="915" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95306" i_stop="95404" i_length="99">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95405" g_stop="96325" g_length="921"/>
          <reference_exon_boundary r_type="cDNA" r_start="916" r_stop="1836" r_length="921" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1837" polyA_stop="1854"/>
      <MATCH_line gen_id="C07HBa0102J11.1" gen_strand="+" ref_id="SGN-U316241" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1836</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0102J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U316241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91737" e_stop="92181"/>
          <exon e_start="92284" e_stop="92393"/>
          <exon e_start="93537" e_stop="93664"/>
          <exon e_start="93753" e_stop="93856"/>
          <exon e_start="95178" e_stop="95305"/>
          <exon e_start="95405" e_stop="96325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTAGGAGTTGAAACACAGCCCAACTGTCTTTTTCTTCCATTTTCTGTCACTTAATCAGACCAAAGACTCCATTTTTTATGTGGTTCTTTTTTATCCACTCAATTATTTCTTCTTGGGACAGGATATAAAAGCACACCCAAGTGTTCAAATTGTTTCCATAGTAGTTTTCTGTTCTTTTTTGCCTATTGGGGTGTCGAAAAAAGCAATCTTGAAGCATTGCAAGGCAAAAAATTTGGTGATTTAGCTAAGTGGGTGTTACAAAGATGATGTCTGTGACTTGCCATAATCTTGAAATTGGGAGAACCCCATTGGAGTCTTTGGCTTGTGGCTGTTCTTTTTCAAAGGGTGTTTTGAGAAATGTAAGTAGAAGATTCAGTGGGAAGAAGTTGTTGTCTTGCAGACAAGAATTTGGGCGTATTTCAACTAAGGCTTCACTTACTGGTATATAGTTAAATTCAATATTTTTAAGGATTACAGTTTATAAGGGTATTCTTGGAATGATTTAAATTTTGAAATTTTGTTGTTGTTGTGGTTGTGTTGCAGGGTTGGCACCAGTTTTGGATTTGAATAAGTCAGAAAAACCTATTTCATTGACTAATGTTTTTGAAGTGGTTGCGGATGACCTACTTACGTTAAACAAGAACTTGCATAATGTGAGTAATCTGTTGACACTGTTTGATTAATCAATCTTTCATGTTTCAACTTTTCCTTATGTTTTTTTCCAGCTATATAGCTTAATGGATTATATGTGATAAAATCTTATTTTTAGACTAATAGCTGCCAAGGTAATACAATAATTATTTATCTGGTATGATTCGGAACACGTTCCTTTCGCTTTATTACTGCTGGTATTGTCAAATGACTAATGTACTATTCATAATTTAACTTCATTGATGCTTGGTCGAGTTGTTCCTTTTAACGAAGTGCTCTAGATGTAAGAGAGAGGTACAATTTTGGACTAGTGGTGATGCTAGTGGGGATTCAAATCAATAGAGATGCTTATTTGATGATATTTGTGTTTATTGGCCTTACTAGAATTAACATATAAGGGGAACAGGAGTTGCAGTATCACTCTGCCAAATGATATCTTAATCTTGGAACATTTGTGAGGATGGTTTTATTTGGTATTTGGTCATGGTTTGATTCAAATACCAGATAACTGATGGTTGTACTTGTCGTTGTGACTTCAATGATTCTAAGGTGAACAACTGCTAAGGTGAATATACTTTGTTCTCGAGTGAACTGCTTTATATGTATGAGAGGTGCAATTTTTGGACTAACAAATGGTCATGGAGGATAAACAACCGGACTTAATAGATATATTTATTTGTCCGGGTTATTGGCCTTAAAAAATCTAACTGTAGGAGTAAGAGCTACACAATTACTTCCAAATGGTATCTATAATTTGGATGATGATGGTGTTCGGGCCAGCATGTGTACACCTCAACTATTCTACCTGGTTACCTTCTAACTCCCATTGGCACAGGTACCTTGACCTTGAGCTTATGAAGTTCATTTTAAAAGGTCCTAGCTTTTTGACAATTTCATTTACTTTGATTCAAAGACTTGATACAAGAAATAATTGCAGTTGGGCCTGAGAGTATCTCAAACGTATATCCTGATAAATAAATACACATAACTGAAAAAGTTTCATATTGTCACTTGCTATTATTAGAATTTGTAAAATATGTGGTTAATTGGATCAATACCACATGAATGTTCAGATGGCATATCAGGCCAATTTACTTTTAACATATCTCTATTCTATTCTGTATCTAAGAGAAATCATTTTTCAGATTGTTGGTGCAGAGAACCCAGTTTTAATGTCTGCAGCTGAGCAGATTTTTGGTGCTGGTGGCAAAAGGGTGAGACCTGCTTTAGTGTTCCTAGTGTCAAGGGCCACAGCAGAAATGTCTGGCTTAAAGTGAGGAACACTATTTGGTTTTTTTTCTCTTGTGATACTCAACAACAACATATCAGCTAAGCTAATATCTTAAAATGCTTGCTGCCAGGGAACTCACCACAAATCACAGAAGGTTAGCTGAAATCATTGAAATGATCCATACTGCAAGCTTGATACATGATGACGTGTTAGATGAAAGTGACACACGAAGAGGTAAACCATTTTAAGCAACTTGTTATTCTCCTCTGATGCGTCTGCAAATTCACCGCCTTTAATTATTTAAAAACTCAAAATGATTATCACTCTTGCATTAATACTTTATGGCTGAAAAGGTTATTGTACATATTCAGTGGTTATTACTTTGGATATCACTCAAAATCTTCAGCTCTACCATTACTAGGAATAGGGTTATTTTCCGGGCATCGTTGCGCGTTATTGTTCTTAAAATAATAATTTTAGTACTATCTTAGGAGGAATATTTAGAAGAAAACGCTAAAGAAGATATTGTCCTCTTTCTGATTCTATGATGATACTGTGATGCATGTTCTAACTCTCTAAACAATATCAATCCTTTAAAGAATCTCATTCTGAAAATTTCAGTTGATGAAGAGTTTGTAAGGTATATCTAAAGAAAAAAGAAATAAAGATGCCCTAGAATCTACTGTGGATGCCAGACAATCTGGACAGATGATATTAACAGAATAACCAGACTTACAATGATGACAATACCTTTTATTGATTAGAACCCCCCAGTAAACTTTATTTGACACTACAACATTGGTTGGATGTGTATGAGATCTGGGCTTATCGTTTCTAAGCTATCTCTTGTGCATTTCCTAGGACTAGTTACTTATTTCTCAAGTATTTTCTAATTGTTATTGATGCTGCCCTGATTGATTTACATGAGGTTCTTGTTGTCTAACTTGATGTGGTTGACTTTCTTCTATGAAAGACGATCTCTCCTGCTCTCCCGGGGGATCCAGAGACCTTAATAACTTCAAGGGTTAGTCCAGGAAATATGCTTGATTAGCAACAGGTTATGTGATGAGGTCATTACTGTTTAAATATTCTTCCTACTTTTCATTTCGGGTTTCTGAGATCTTCTCAGCATTTATCAGATTTGTATGCTTTCTGAAAAAAATGTGAGACTCTGTACAACTGTTTTGTGAAATGGTACACTTAACAATGGATACACCAAAAAAAGAGAGAAAACTGACAAGATTGGACTAGGTATGCGCTTTCCCAGGCTTACAAAAAAGAGCAAGACTAGATTAGATCTTTGCTTTCCCAAGTTTGTAGAGACTGATAATATTAGATTGTTATTTCTACCATCAACACTTCCTTTTCCTAATAGTTTAGCTTAGATCAATTGATGATTGATTCTTTTATAGCACTTCCAAATATGAGTCCTCTGTTTGTCAATCTAATCATTTACCCTTGTTCTTCTTCTAACTTGCTTCTCTTAATCGCAATTTCTATTATACCTTCTCCTTTGCTTCTTTATATTAGCCTCCTAATAGAACTTCTAATGCAGGAAAGGAGACTATTCACCAATTATATGGTACTAGAGTGGCAGTACTGGCTGGTGATTTTATGTTTGCACAGTCGTCCTGGTACCTAGCTAACCTTGAAAACCTTGAAGTCATAAAGCTCATCAGTCAGGTATCATAGGTTTATACATCTTTTAGAATTGGCAACATTGATATCATTATTAGTTCGTTGTACCTCAACGCCCTTTGTGGTTATTGGTTTTTATGACAGGTTATTAAAGACTTTGCAAGTGGTGAAATAAAGCAGGCCTCTAACTTGTTCGACTGTGATGTTGGACTGGATGAATATTTGCTCAAGAGTTACTATAAAACGGCCTCCTTGATTGCTGCAAGCACCAAAGGAGCTGCCATTTTCAGTGAAGTTGGCAGTGATATTAGTGAACAAATGTTTCAATATGGGAGGAATCTTGGTTTATCGTTCCAGATTGTTGATGACATATTGGACTTCACACAATCAGCCGCACAACTGGGAAAGCCAGCTGGAAGTGACTTAGCCAAGGGAAACCTTACTGCACCAGTACTTTTTGCATTAGAGAAAGAGCCAAACCTTAGGAATATAATCGAATCAGAATTTCACGATGCTGGTTCTCTCGAGGAGGCCATCAATCTGGTGAAAAGCTGTGGGGGAATTCAACGAGCACAAGATTTGGCAAAGGAGAAAGCTGATTTAGCAATGCAGAACCTAAAATGCCTTCCATCTAGTCCTTTTCAAGCAGCACTTGAGGAAATCGTGAAGTATAATCTGGAGAGAATTGAATAGACGAAAACAAAGGACGAAACTATACAACTTTGGTTTATTATTCTCTGAAAGCTCTTCATATCTAACAATATCTGGAGCACAGAGTAGAAGCTATTACTATAGTTTGAATGGCAACAACGATCAGAACGAAAGTGCTTCACTATGTTCATATATTATACCCATACAGGTTGTAATTTTCAGTTCCTAATACAGCAATATGGTGTTCCAGCATTCTTTATAATTTGGCTAATAAATTGTCAAATTTCAACTGTTGTTGTACACTAAAGAAATTTCACATTACAAATAATGTCATGTATTAGTATTTACTATTGGCTTTCTTGGATGAACATATATGTTATAAATTGATAATACAATAAACATATTACACCTTAA</genome_strand>
        <mrna_strand>AATTTTAGGAGTTGAAACACAGCCCAACTGTCTTTTTCTTCCATTTTCTGTCACTTAATCAGACCAAAGACTCCATTTTTTATGTGGTTCTTTTTTATCCACTCAATTATTTCTTCTTGGGACAGGATATAAAAGCACACCCAAGTGTTCAAATTGTTTCCATAGTAGTTTTCTGTTCTTTTTTGCCTATTGGGGTGTCGAAAAAAGCAATCTTGAAGCATTGCAAGGCAAAAAATTTGGTGATTTAGCTAAGTGGGTGTTACAAAGATGATGTCTGTGACTTGCCATAATCTTGAAATTGGGAGAACCCCATTGGAGTCTTTGGCTTGTGGCTGTTCTTTTTCAAAGGGTGTTTTGAGAAATGTAAGTAGAAGATTCAGTGGGAAGAAGTTGTTGTCTTGCAGACAAGAATTTGGGCGTATTTCAACTAAGGCTTCACTTACTG......................................................................................................GGTTGGCACCAGTTTTGGATTTGAATAAGTCAGAAAAACCTATTTCATTGACTAATGTTTTTGAAGTGGTTGCGGATGACCTACTTACGTTAAACAAGAACTTGCATAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTGGTGCAGAGAACCCAGTTTTAATGTCTGCAGCTGAGCAGATTTTTGGTGCTGGTGGCAAAAGGGTGAGACCTGCTTTAGTGTTCCTAGTGTCAAGGGCCACAGCAGAAATGTCTGGCTTAAA........................................................................................GGAACTCACCACAAATCACAGAAGGTTAGCTGAAATCATTGAAATGATCCATACTGCAAGCTTGATACATGATGACGTGTTAGATGAAAGTGACACACGAAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGGAGACTATTCACCAATTATATGGTACTAGAGTGGCAGTACTGGCTGGTGATTTTATGTTTGCACAGTCGTCCTGGTACCTAGCTAACCTTGAAAACCTTGAAGTCATAAAGCTCATCAGTCAG...................................................................................................GTTATTAAAGACTTTGCAAGTGGTGAAATAAAGCAGGCCTCTAACTTGTTCGACTGTGATGTTGGACTGGATGAATATTTGCTCAAGAGTTACTATAAAACGGCCTCCTTGATTGCTGCAAGCACCAAAGGAGCTGCCATTTTCAGTGAAGTTGGCAGTGATATTAGTGAACAAATGTTTCAATATGGGAGGAATCTTGGTTTATCGTTCCAGATTGTTGATGACATATTGGACTTCACACAATCAGCCGCACAACTGGGAAAGCCAGCTGGAAGTGACTTAGCCAAGGGAAACCTTACTGCACCAGTACTTTTTGCATTAGAGAAAGAGCCAAACCTTAGGAATATAATCGAATCAGAATTTCACGATGCTGGTTCTCTCGAGGAGGCCATCAATCTGGTGAAAAGCTGTGGGGGAATTCAACGAGCACAAGATTTGGCAAAGGAGAAAGCTGATTTAGCAATGCAGAACCTAAAATGCCTTCCATCTAGTCCTTTTCAAGCAGCACTTGAGGAAATCGTGAAGTATAATCTGGAGAGAATTGAATAGACGAAAACAAAGGACGAAACTATACAACTTTGGTTTATTATTCTCTGAAAGCTCTTCATATCTAACAATATCTGGAGCACAGAGTAGAAGCTATTACTATAGTTTGAATGGCAACAACGATCAGAACGAAAGTGCTTCACTATGTTCATATATTATACCCATACAGGTTGTAATTTTCAGTTCCTAATACAGCAATATGGTGTTCCAGCATTCTTTATAATTTGGCTAATAAATTGTCAAATTTCAACTGTTGTTGTACACTAAAGAAATTTCACATTACAAATAATGTCATGTATTAGTATTTACTATTGGCTTTCTTGGATGAACATATATGTTATAAATTGATAATACAATAAACATATTACACCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>17</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="90" PGL_stop="3963"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90" e_stop="202"/>
            <exon e_start="318" e_stop="386"/>
            <exon e_start="3605" e_stop="3963"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.802" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90" e_stop="202" e_length="113"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="203" i_stop="317" i_length="115"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="318" e_stop="386" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.802">
            <gDNA_intron_boundary i_start="387" i_stop="3604" i_length="3218"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="3605" e_stop="3963" e_length="359"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90" stop="202"/>
              <exon start="318" stop="386"/>
              <exon start="3605" stop="3963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329358" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCCTATAACACATCCGCCACTCTATTTTACTCTATAAATACTCTATCTTTCAATTTTAACCACATTTCAAATTTCAGAATCTAATCCTTCATCGCTCCTCTTCAATTTCAG : ACTAGCAGAAACACTTTCCGCACGGTGTTTCAGAATCTAAACAATCATCGATCTCTGCTTTAATTTCAG : GTGGTCTTGTTCTAGACAGATGCCAGGGAACAAGTATACCGGCAACCAAGCGGTTGCTAGCACTCGATTGGAGAGGCTATTGAGAGAAAGAGAGCTTAGGAAAAGTAGCAAAGTTTCTCACTTTCCAAATGAATCTACTGATAACAATAGGGGAAACGAGCTCTCTGACCATGATTTTCGCCAAGGAGAAGCTGATAATGGAGGAGTTTCATATGTCGAACAGTACCTCGAAGGAGCTGCACTAGCATATAATGAAGGATGGGAGCGGCCTGATGGAAAGCCCACCAGACAACGACTCTTGGTTGTGGCAAACAGGTTACCTGTCTCTGCAGTAAGGAGAGGCGAGGAATCCTGGTCTC</gDNA_template>
            <first_frame> S  P  I  T  H  P  P  L  Y  F  T  L  *  I  L  Y  L  S  I  L  T  T  F  Q  I  S  E  S  N  P  S  S  L  L  F  N  F  R :   L  A  E  T  L  S  A  R  C  F  R  I  *  T  I  I  D  L  C  F  N  F  R :   W  S  C  S  R  Q  M  P  G  N  K  Y  T  G  N  Q  A  V  A  S  T  R  L  E  R  L  L  R  E  R  E  L  R  K  S  S  K  V  S  H  F  P  N  E  S  T  D  N  N  R  G  N  E  L  S  D  H  D  F  R  Q  G  E  A  D  N  G  G  V  S  Y  V  E  Q  Y  L  E  G  A  A  L  A  Y  N  E  G  W  E  R  P  D  G  K  P  T  R  Q  R  L  L  V  V  A  N  R  L  P  V  S  A  V  R  R  G  E  E  S  W  S  </first_frame>
            <second_frame>  L  L  *  H  I  R  H  S  I  L  L  Y  K  Y  S  I  F  Q  F  *  P  H  F  K  F  Q  N  L  I  L  H  R  S  S  S  I  S   : D  *  Q  K  H  F  P  H  G  V  S  E  S  K  Q  S  S  I  S  A  L  I  S   : G  G  L  V  L  D  R  C  Q  G  T  S  I  P  A  T  K  R  L  L  A  L  D  W  R  G  Y  *  E  K  E  S  L  G  K  V  A  K  F  L  T  F  Q  M  N  L  L  I  T  I  G  E  T  S  S  L  T  M  I  F  A  K  E  K  L  I  M  E  E  F  H  M  S  N  S  T  S  K  E  L  H  *  H  I  M  K  D  G  S  G  L  M  E  S  P  P  D  N  D  S  W  L  W  Q  T  G  Y  L  S  L  Q  *  G  E  A  R  N  P  G  L </second_frame>
            <third_frame>   S  Y  N  T  S  A  T  L  F  Y  S  I  N  T  L  S  F  N  F  N  H  I  S  N  F  R  I  *  S  F  I  A  P  L  Q  F  Q  :  T  S  R  N  T  F  R  T  V  F  Q  N  L  N  N  H  R  S  L  L  *  F  Q  :  V  V  L  F  *  T  D  A  R  E  Q  V  Y  R  Q  P  S  G  C  *  H  S  I  G  E  A  I  E  R  K  R  A  *  E  K  *  Q  S  F  S  L  S  K  *  I  Y  *  *  Q  *  G  K  R  A  L  *  P  *  F  S  P  R  R  S  *  *  W  R  S  F  I  C  R  T  V  P  R  R  S  C  T  S  I  *  *  R  M  G  A  A  *  W  K  A  H  Q  T  T  T  L  G  C  G  K  Q  V  T  C  L  C  S  K  E  R  R  G  I  L  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0102J11.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="358" stop="386"/>
                    <exon start="3605" stop="3962"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TIIDLCFNFRWSCSRQMPGNKYTGNQAVASTRLERLLRERELRKSSKVSHFPNESTDNNRGNELSDHDFRQGEADNGGVSYVEQYLEGAALAYNEGWERPDGKPTRQRLLVVANRLPVSAVRRGEESWS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="3980" PGL_stop="13506"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6754" e_stop="6756"/>
            <exon e_start="7042" e_stop="7192"/>
            <exon e_start="8216" e_stop="8304"/>
            <exon e_start="8395" e_stop="8443"/>
            <exon e_start="9504" e_stop="9604"/>
            <exon e_start="10229" e_stop="10416"/>
            <exon e_start="10959" e_stop="11076"/>
            <exon e_start="11621" e_stop="11800"/>
            <exon e_start="11880" e_stop="12002"/>
            <exon e_start="12076" e_stop="12163"/>
            <exon e_start="12321" e_stop="12451"/>
            <exon e_start="12528" e_stop="12626"/>
            <exon e_start="12882" e_stop="13506"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.932" acc_prob="0.922" e_score="1.000"/>
          <exon-intron don_prob="0.771" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.999" e_score="0.990"/>
          <exon-intron don_prob="0.967" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.220" acc_prob="0.925" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.785" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.815" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6754" e_stop="6756" e_length="3"/>
          </exon>
          <intron i_serial="1" don_prob="0.932" acc_prob="0.922">
            <gDNA_intron_boundary i_start="6757" i_stop="7041" i_length="285"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7042" e_stop="7192" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.771" acc_prob="0.995">
            <gDNA_intron_boundary i_start="7193" i_stop="8215" i_length="1023"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8216" e_stop="8304" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.991">
            <gDNA_intron_boundary i_start="8305" i_stop="8394" i_length="90"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="8395" e_stop="8443" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.989">
            <gDNA_intron_boundary i_start="8444" i_stop="9503" i_length="1060"/>
          </intron>
          <exon e_serial="5" e_score="0.990">
            <gDNA_exon_boundary e_start="9504" e_stop="9604" e_length="101"/>
          </exon>
          <intron i_serial="5" don_prob="0.948" acc_prob="0.999">
            <gDNA_intron_boundary i_start="9605" i_stop="10228" i_length="624"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="10229" e_stop="10416" e_length="188"/>
          </exon>
          <intron i_serial="6" don_prob="0.967" acc_prob="0.979">
            <gDNA_intron_boundary i_start="10417" i_stop="10958" i_length="542"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="10959" e_stop="11076" e_length="118"/>
          </exon>
          <intron i_serial="7" don_prob="0.964" acc_prob="0.985">
            <gDNA_intron_boundary i_start="11077" i_stop="11620" i_length="544"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="11621" e_stop="11800" e_length="180"/>
          </exon>
          <intron i_serial="8" don_prob="0.220" acc_prob="0.925">
            <gDNA_intron_boundary i_start="11801" i_stop="11879" i_length="79"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="11880" e_stop="12002" e_length="123"/>
          </exon>
          <intron i_serial="9" don_prob="0.924" acc_prob="0.785">
            <gDNA_intron_boundary i_start="12003" i_stop="12075" i_length="73"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="12076" e_stop="12163" e_length="88"/>
          </exon>
          <intron i_serial="10" don_prob="0.974" acc_prob="0.815">
            <gDNA_intron_boundary i_start="12164" i_stop="12320" i_length="157"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="12321" e_stop="12451" e_length="131"/>
          </exon>
          <intron i_serial="11" don_prob="0.984" acc_prob="0.999">
            <gDNA_intron_boundary i_start="12452" i_stop="12527" i_length="76"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="12528" e_stop="12626" e_length="99"/>
          </exon>
          <intron i_serial="12" don_prob="0.978" acc_prob="0.988">
            <gDNA_intron_boundary i_start="12627" i_stop="12881" i_length="255"/>
          </intron>
          <exon e_serial="13" e_score="0.998">
            <gDNA_exon_boundary e_start="12882" e_stop="13506" e_length="625"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6754" stop="6756"/>
              <exon start="7042" stop="7192"/>
              <exon start="8216" stop="8304"/>
              <exon start="8395" stop="8443"/>
              <exon start="9504" stop="9604"/>
              <exon start="10229" stop="10416"/>
              <exon start="10959" stop="10989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9542" stop="9604"/>
              <exon start="10229" stop="10416"/>
              <exon start="10959" stop="11076"/>
              <exon start="11621" stop="11800"/>
              <exon start="11880" stop="12002"/>
              <exon start="12076" stop="12163"/>
              <exon start="12321" stop="12451"/>
              <exon start="12528" stop="12626"/>
              <exon start="12882" stop="13506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312360" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAG : GTTATGCTAGGAGTTGATCGCCTTGATATGATTAAAGGAATTCCCCAAAAGATCCTGGCATTTGAGAAGTTCCTTGAAGAAAATCCGTACTGGCGTGATAAAGTGGTTTTGCTTCAAATTGCTGTGCCAACAAGAACAGATGTTCCTGAAT : ACCAAAAACTTACCAGTCAAGTTCATGAGATTGTTGGACGCATCAATGGTCGGTTTGGAACTTTGACTGCAGTGCCTATTCATCATCTG : GACCGTTCTCTTGACTTTCATGCATTATGTGCACTGTATGCTGTAACTG : ATGTAGCGTTGGTTACCTCTTTAAGAGATGGCATGAACCTCGTCAGCTATGAATTTGTAGCCTGCCAAGAGTTGAAAAAAGGGGTCCTTATTCTCAGCGAA : TTTGCTGGTGCTGCACAATCGTTAGGTGCTGGAGCAATTCTGGTGAATCCATGGAATATAACAGAGGTTGCTGCTTCGATTGGGCAAGCTTTAAATATGTCAGCTGAAGAAAGAGAAAAACGCCACAGGCATAACTTTCTGCATGTGACTACGCATACTGCTCAAGAATGGGCTGAGACTTTTGTGAG : TGAACTAAATGATACTGTTATTGAAGCTCAACAGAGGATAAGAAAAGTTCCGCCCCGGCTTAACATCAGTGATGCAATTGAGCGCTATTCGTTTTCCAATAATCGACTACTAATATTG : GGTTTCAATTCTACACTGACAGAATCGGTGGATACCCCTGGAAGAAGAGGTGGAGATCAAATCAAAGAAATGGAACTGAAATTGCATCCTGAGTTGAAAGAATCATTGCTCGCGATTTGTAACGACCCAAAGACAACAGTCGTTGTCCTCAGTGGAAGTGATAGAAACGTCTTAGATGAT : AACTTCAGCGAGTACAACATGTGGTTAGCAGCAGAAAATGGAATGTTTTTACGATCTACAAACGGTGTATGGATGACAACTATGCCAGAACACCTAAACATGGACTGGGTTGATAGTGTTAAG : CACGTTTTCGAGTACTTCACTGAAAGGACACCGAGATCTCACTTTGAACAACGTGAAACTTCACTTGTTTGGAATTACAAGTATGCAG : ATGTTGAATTTGGAAGATTGCAAGCTAGAGACATGCTTCAGCATCTCTGGACAGGTCCAATATCAAATGCATCTGTTGATGTTGTACAAGGACTCCGCTCCGTTGAGGTTCGAGCAGTTGGTGTTACAAAG : GGAGCAGCAATAGATCGTATACTGGGGGAGATCGTACACAGTAAAGCCATCGCAACACCAATTGATTACGTTTTATGCATAGGGCATTTTCTGGGGAAG : GATGAGGATGTATATACATTTTTTGAGCCAGAGCTTCCTTCTGACTGCATCGGTATGCCAAGAAGTAAGGTCAGTGATGCACCAAAGGTGCCCGGGGAAAGGCGATCAGTTCCAAAACTCCCTTCTAGTCGAACTAGCTCAAAGTCATCTCAGAATAGGAACAGACCAGTTTCAAACTCGGATAAGAAGACTTCCAATGGGCGACGGCCCTCACCTGAAAATGTGTCATGGAATGTGCTGGATCTGAAGAAGGAGAATTACTTCTCTTGTGCAGTTGGAAGGACTCGTACAAACGCTCGGTATCTGCTCAGTACGCCAGACGACGTTGTTGCTTTTCTAAGGGAACTAGCTGAAGCACCTATTTCAAATGGGACATCATGAAAAAGAAGGATAGATGATGCCTGGTTGCATCAAGTGATGAATGATCAGTACCAAGTTCTTGGTTGAGGGAGATTTGTATGGGATGATATTGAATAAACGTTTTATACCTTTACTTTGGATATAGATGTTTGCATTCAAAAGTTTACAAAGTAGAGAGAATAACCTTCATGCTAGCTAGTACATCCGTGCCAATTATTTTGTCTAGTCTTTTACTTTGGCACGAAATTTTAAGAAAATTAAGAAA</gDNA_template>
            <first_frame> K  :  V  M  L  G  V  D  R  L  D  M  I  K  G  I  P  Q  K  I  L  A  F  E  K  F  L  E  E  N  P  Y  W  R  D  K  V  V  L  L  Q  I  A  V  P  T  R  T  D  V  P  E   : Y  Q  K  L  T  S  Q  V  H  E  I  V  G  R  I  N  G  R  F  G  T  L  T  A  V  P  I  H  H  L  :  D  R  S  L  D  F  H  A  L  C  A  L  Y  A  V  T   : D  V  A  L  V  T  S  L  R  D  G  M  N  L  V  S  Y  E  F  V  A  C  Q  E  L  K  K  G  V  L  I  L  S  E  :  F  A  G  A  A  Q  S  L  G  A  G  A  I  L  V  N  P  W  N  I  T  E  V  A  A  S  I  G  Q  A  L  N  M  S  A  E  E  R  E  K  R  H  R  H  N  F  L  H  V  T  T  H  T  A  Q  E  W  A  E  T  F  V  S :   E  L  N  D  T  V  I  E  A  Q  Q  R  I  R  K  V  P  P  R  L  N  I  S  D  A  I  E  R  Y  S  F  S  N  N  R  L  L  I  L  :  G  F  N  S  T  L  T  E  S  V  D  T  P  G  R  R  G  G  D  Q  I  K  E  M  E  L  K  L  H  P  E  L  K  E  S  L  L  A  I  C  N  D  P  K  T  T  V  V  V  L  S  G  S  D  R  N  V  L  D  D  :  N  F  S  E  Y  N  M  W  L  A  A  E  N  G  M  F  L  R  S  T  N  G  V  W  M  T  T  M  P  E  H  L  N  M  D  W  V  D  S  V  K  :  H  V  F  E  Y  F  T  E  R  T  P  R  S  H  F  E  Q  R  E  T  S  L  V  W  N  Y  K  Y  A   : D  V  E  F  G  R  L  Q  A  R  D  M  L  Q  H  L  W  T  G  P  I  S  N  A  S  V  D  V  V  Q  G  L  R  S  V  E  V  R  A  V  G  V  T  K  :  G  A  A  I  D  R  I  L  G  E  I  V  H  S  K  A  I  A  T  P  I  D  Y  V  L  C  I  G  H  F  L  G  K  :  D  E  D  V  Y  T  F  F  E  P  E  L  P  S  D  C  I  G  M  P  R  S  K  V  S  D  A  P  K  V  P  G  E  R  R  S  V  P  K  L  P  S  S  R  T  S  S  K  S  S  Q  N  R  N  R  P  V  S  N  S  D  K  K  T  S  N  G  R  R  P  S  P  E  N  V  S  W  N  V  L  D  L  K  K  E  N  Y  F  S  C  A  V  G  R  T  R  T  N  A  R  Y  L  L  S  T  P  D  D  V  V  A  F  L  R  E  L  A  E  A  P  I  S  N  G  T  S  *  K  R  R  I  D  D  A  W  L  H  Q  V  M  N  D  Q  Y  Q  V  L  G  *  G  R  F  V  W  D  D  I  E  *  T  F  Y  T  F  T  L  D  I  D  V  C  I  Q  K  F  T  K  *  R  E  *  P  S  C  *  L  V  H  P  C  Q  L  F  C  L  V  F  Y  F  G  T  K  F  *  E  N  *  E  </first_frame>
            <second_frame>  R :   L  C  *  E  L  I  A  L  I  *  L  K  E  F  P  K  R  S  W  H  L  R  S  S  L  K  K  I  R  T  G  V  I  K  W  F  C  F  K  L  L  C  Q  Q  E  Q  M  F  L  N  :  T  K  N  L  P  V  K  F  M  R  L  L  D  A  S  M  V  G  L  E  L  *  L  Q  C  L  F  I  I  W :   T  V  L  L  T  F  M  H  Y  V  H  C  M  L  *  L  :  M  *  R  W  L  P  L  *  E  M  A  *  T  S  S  A  M  N  L  *  P  A  K  S  *  K  K  G  S  L  F  S  A  N :   L  L  V  L  H  N  R  *  V  L  E  Q  F  W  *  I  H  G  I  *  Q  R  L  L  L  R  L  G  K  L  *  I  C  Q  L  K  K  E  K  N  A  T  G  I  T  F  C  M  *  L  R  I  L  L  K  N  G  L  R  L  L  *   : V  N  *  M  I  L  L  L  K  L  N  R  G  *  E  K  F  R  P  G  L  T  S  V  M  Q  L  S  A  I  R  F  P  I  I  D  Y  *  Y  W :   V  S  I  L  H  *  Q  N  R  W  I  P  L  E  E  E  V  E  I  K  S  K  K  W  N  *  N  C  I  L  S  *  K  N  H  C  S  R  F  V  T  T  Q  R  Q  Q  S  L  S  S  V  E  V  I  E  T  S  *  M  I :   T  S  A  S  T  T  C  G  *  Q  Q  K  M  E  C  F  Y  D  L  Q  T  V  Y  G  *  Q  L  C  Q  N  T  *  T  W  T  G  L  I  V  L  S :   T  F  S  S  T  S  L  K  G  H  R  D  L  T  L  N  N  V  K  L  H  L  F  G  I  T  S  M  Q  :  M  L  N  L  E  D  C  K  L  E  T  C  F  S  I  S  G  Q  V  Q  Y  Q  M  H  L  L  M  L  Y  K  D  S  A  P  L  R  F  E  Q  L  V  L  Q  R :   E  Q  Q  *  I  V  Y  W  G  R  S  Y  T  V  K  P  S  Q  H  Q  L  I  T  F  Y  A  *  G  I  F  W  G  R :   M  R  M  Y  I  H  F  L  S  Q  S  F  L  L  T  A  S  V  C  Q  E  V  R  S  V  M  H  Q  R  C  P  G  K  G  D  Q  F  Q  N  S  L  L  V  E  L  A  Q  S  H  L  R  I  G  T  D  Q  F  Q  T  R  I  R  R  L  P  M  G  D  G  P  H  L  K  M  C  H  G  M  C  W  I  *  R  R  R  I  T  S  L  V  Q  L  E  G  L  V  Q  T  L  G  I  C  S  V  R  Q  T  T  L  L  L  F  *  G  N  *  L  K  H  L  F  Q  M  G  H  H  E  K  E  G  *  M  M  P  G  C  I  K  *  *  M  I  S  T  K  F  L  V  E  G  D  L  Y  G  M  I  L  N  K  R  F  I  P  L  L  W  I  *  M  F  A  F  K  S  L  Q  S  R  E  N  N  L  H  A  S  *  Y  I  R  A  N  Y  F  V  *  S  F  T  L  A  R  N  F  K  K  I  K  K </second_frame>
            <third_frame>    : G  Y  A  R  S  *  S  P  *  Y  D  *  R  N  S  P  K  D  P  G  I  *  E  V  P  *  R  K  S  V  L  A  *  *  S  G  F  A  S  N  C  C  A  N  K  N  R  C  S  *  I :   P  K  T  Y  Q  S  S  S  *  D  C  W  T  H  Q  W  S  V  W  N  F  D  C  S  A  Y  S  S  S   : G  P  F  S  *  L  S  C  I  M  C  T  V  C  C  N  * :   C  S  V  G  Y  L  F  K  R  W  H  E  P  R  Q  L  *  I  C  S  L  P  R  V  E  K  R  G  P  Y  S  Q  R   : I  C  W  C  C  T  I  V  R  C  W  S  N  S  G  E  S  M  E  Y  N  R  G  C  C  F  D  W  A  S  F  K  Y  V  S  *  R  K  R  K  T  P  Q  A  *  L  S  A  C  D  Y  A  Y  C  S  R  M  G  *  D  F  C  E  :  *  T  K  *  Y  C  Y  *  S  S  T  E  D  K  K  S  S  A  P  A  *  H  Q  *  C  N  *  A  L  F  V  F  Q  *  S  T  T  N  I   : G  F  Q  F  Y  T  D  R  I  G  G  Y  P  W  K  K  R  W  R  S  N  Q  R  N  G  T  E  I  A  S  *  V  E  R  I  I  A  R  D  L  *  R  P  K  D  N  S  R  C  P  Q  W  K  *  *  K  R  L  R  *   : *  L  Q  R  V  Q  H  V  V  S  S  R  K  W  N  V  F  T  I  Y  K  R  C  M  D  D  N  Y  A  R  T  P  K  H  G  L  G  *  *  C  *   : A  R  F  R  V  L  H  *  K  D  T  E  I  S  L  *  T  T  *  N  F  T  C  L  E  L  Q  V  C  R :   C  *  I  W  K  I  A  S  *  R  H  A  S  A  S  L  D  R  S  N  I  K  C  I  C  *  C  C  T  R  T  P  L  R  *  G  S  S  S  W  C  Y  K   : G  S  S  N  R  S  Y  T  G  G  D  R  T  Q  *  S  H  R  N  T  N  *  L  R  F  M  H  R  A  F  S  G  E   : G  *  G  C  I  Y  I  F  *  A  R  A  S  F  *  L  H  R  Y  A  K  K  *  G  Q  *  C  T  K  G  A  R  G  K  A  I  S  S  K  T  P  F  *  S  N  *  L  K  V  I  S  E  *  E  Q  T  S  F  K  L  G  *  E  D  F  Q  W  A  T  A  L  T  *  K  C  V  M  E  C  A  G  S  E  E  G  E  L  L  L  L  C  S  W  K  D  S  Y  K  R  S  V  S  A  Q  Y  A  R  R  R  C  C  F  S  K  G  T  S  *  S  T  Y  F  K  W  D  I  M  K  K  K  D  R  *  C  L  V  A  S  S  D  E  *  S  V  P  S  S  W  L  R  E  I  C  M  G  *  Y  *  I  N  V  L  Y  L  Y  F  G  Y  R  C  L  H  S  K  V  Y  K  V  E  R  I  T  F  M  L  A  S  T  S  V  P  I  I  L  S  S  L  L  L  W  H  E  I  L  R  K  L  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0102J11.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6754" stop="6756"/>
                    <exon start="7042" stop="7192"/>
                    <exon start="8216" stop="8304"/>
                    <exon start="8395" stop="8443"/>
                    <exon start="9504" stop="9604"/>
                    <exon start="10229" stop="10416"/>
                    <exon start="10959" stop="11076"/>
                    <exon start="11621" stop="11800"/>
                    <exon start="11880" stop="12002"/>
                    <exon start="12076" stop="12163"/>
                    <exon start="12321" stop="12451"/>
                    <exon start="12528" stop="12626"/>
                    <exon start="12882" stop="13262"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1698</number_coding_nucleotides>
                  <number_encoded_amino_acids>566</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVMLGVDRLDMIKGIPQKILAFEKFLEENPYWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQELKKGVLILSEFAGAAQSLGAGAILVNPWNITEVAASIGQALNMSAEEREKRHRHNFLHVTTHTAQEWAETFVSELNDTVIEAQQRIRKVPPRLNISDAIERYSFSNNRLLILGFNSTLTESVDTPGRRGGDQIKEMELKLHPELKESLLAICNDPKTTVVVLSGSDRNVLDDNFSEYNMWLAAENGMFLRSTNGVWMTTMPEHLNMDWVDSVKHVFEYFTERTPRSHFEQRETSLVWNYKYADVEFGRLQARDMLQHLWTGPISNASVDVVQGLRSVEVRAVGVTKGAAIDRILGEIVHSKAIATPIDYVLCIGHFLGKDEDVYTFFEPELPSDCIGMPRSKVSDAPKVPGERRSVPKLPSSRTSSKSSQNRNRPVSNSDKKTSNGRRPSPENVSWNVLDLKKENYFSCAVGRTRTNARYLLSTPDDVVAFLRELAEAPISNGTS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="3980" e_stop="4002"/>
            <exon e_start="4143" e_stop="4240"/>
            <exon e_start="4401" e_stop="4789"/>
            <exon e_start="5541" e_stop="5655"/>
            <exon e_start="5844" e_stop="5945"/>
            <exon e_start="7042" e_stop="7088"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.993" e_score="0.957"/>
          <exon-intron don_prob="0.999" acc_prob="0.789" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.859" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.922" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.957">
            <gDNA_exon_boundary e_start="3980" e_stop="4002" e_length="23"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.993">
            <gDNA_intron_boundary i_start="4003" i_stop="4142" i_length="140"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4143" e_stop="4240" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.789">
            <gDNA_intron_boundary i_start="4241" i_stop="4400" i_length="160"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="4401" e_stop="4789" e_length="389"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.859">
            <gDNA_intron_boundary i_start="4790" i_stop="5540" i_length="751"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="5541" e_stop="5655" e_length="115"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.967">
            <gDNA_intron_boundary i_start="5656" i_stop="5843" i_length="188"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="5844" e_stop="5945" e_length="102"/>
          </exon>
          <intron i_serial="5" don_prob="0.984" acc_prob="0.922">
            <gDNA_intron_boundary i_start="5946" i_stop="7041" i_length="1096"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="7042" e_stop="7088" e_length="47"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3980" stop="4002"/>
              <exon start="4143" stop="4240"/>
              <exon start="4401" stop="4789"/>
              <exon start="5541" stop="5655"/>
              <exon start="5844" stop="5945"/>
              <exon start="7042" stop="7088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340216" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGTCTTGTTAGTGCTCTTCTTG : GTGTGAAGGAGTTTGAGGCTAGATGGATTGGTTGGGCAGGTGTGAATGTGCCAGATGAGGCTGGGCAGAGGGCACTTACTAAGGCACTGGCAGAAAAG : AGGTGTATCCCTGTATTCCTGGATGAAGAAATTGTTCATCAGTATTACAACGGTTACTGCAACAATATATTGTGGCCTCTTTTCCATTATCTTGGACTTCCGCAAGAAGACCGCCTTGCGACTACCAGAAGTTTCCAGTCTCAGTTTGCTGCTTATAAGAAAGCAAATCAAATGTTTGCTGATGTTGTGAATGAACATTACGAAGAAGGTGATGTGGTATGGTGTCATGACTACCATCTCATGTTCCTGCCAAAATGTCTCAAGGATTACAACAGCCAAATGAAAGTCGGTTGGTTTCTACACACACCCTTTCCATCCTCGGAAATACACAGGACACTGCCGTCTAGATCAGAGCTGCTCCGAGCAGTTCTTGCTGCTGACTTGGTTGG : TTTTCATACCTATGACTATGCAAGGCATTTTGTTAGTGCATGTACTCGTATCCTGGGACTTGAAGGAACACCTGAAGGAGTAGAAGATCAAGGTAGACTGACCCGCGTTGCTGCG : TTTCCTATTGGTATAGATTCAGAACGATTTATTCGAGCACTTGAAGTTACTCAAGTTCAGGAACACATAAAAGAACTAAAAGAGAGATTTGCTGGGAGAAAG : GTTATGCTAGGAGTTGATCGCCTTGATATGATTAAAGGAATTCCCCA</gDNA_template>
            <first_frame> R  S  C  *  C  S  S  W :   C  E  G  V  *  G  *  M  D  W  L  G  R  C  E  C  A  R  *  G  W  A  E  G  T  Y  *  G  T  G  R  K   : E  V  Y  P  C  I  P  G  *  R  N  C  S  S  V  L  Q  R  L  L  Q  Q  Y  I  V  A  S  F  P  L  S  W  T  S  A  R  R  P  P  C  D  Y  Q  K  F  P  V  S  V  C  C  L  *  E  S  K  S  N  V  C  *  C  C  E  *  T  L  R  R  R  *  C  G  M  V  S  *  L  P  S  H  V  P  A  K  M  S  Q  G  L  Q  Q  P  N  E  S  R  L  V  S  T  H  T  L  S  I  L  G  N  T  Q  D  T  A  V  *  I  R  A  A  P  S  S  S  C  C  *  L  G  W  :  F  S  Y  L  *  L  C  K  A  F  C  *  C  M  Y  S  Y  P  G  T  *  R  N  T  *  R  S  R  R  S  R  *  T  D  P  R  C  C   : V  S  Y  W  Y  R  F  R  T  I  Y  S  S  T  *  S  Y  S  S  S  G  T  H  K  R  T  K  R  E  I  C  W  E  K   : G  Y  A  R  S  *  S  P  *  Y  D  *  R  N  S  P </first_frame>
            <second_frame>  G  L  V  S  A  L  L   : G  V  K  E  F  E  A  R  W  I  G  W  A  G  V  N  V  P  D  E  A  G  Q  R  A  L  T  K  A  L  A  E  K  :  R  C  I  P  V  F  L  D  E  E  I  V  H  Q  Y  Y  N  G  Y  C  N  N  I  L  W  P  L  F  H  Y  L  G  L  P  Q  E  D  R  L  A  T  T  R  S  F  Q  S  Q  F  A  A  Y  K  K  A  N  Q  M  F  A  D  V  V  N  E  H  Y  E  E  G  D  V  V  W  C  H  D  Y  H  L  M  F  L  P  K  C  L  K  D  Y  N  S  Q  M  K  V  G  W  F  L  H  T  P  F  P  S  S  E  I  H  R  T  L  P  S  R  S  E  L  L  R  A  V  L  A  A  D  L  V  G :   F  H  T  Y  D  Y  A  R  H  F  V  S  A  C  T  R  I  L  G  L  E  G  T  P  E  G  V  E  D  Q  G  R  L  T  R  V  A  A  :  F  P  I  G  I  D  S  E  R  F  I  R  A  L  E  V  T  Q  V  Q  E  H  I  K  E  L  K  E  R  F  A  G  R  K  :  V  M  L  G  V  D  R  L  D  M  I  K  G  I  P   </second_frame>
            <third_frame>   V  L  L  V  L  F  L  :  V  *  R  S  L  R  L  D  G  L  V  G  Q  V  *  M  C  Q  M  R  L  G  R  G  H  L  L  R  H  W  Q  K  R :   G  V  S  L  Y  S  W  M  K  K  L  F  I  S  I  T  T  V  T  A  T  I  Y  C  G  L  F  S  I  I  L  D  F  R  K  K  T  A  L  R  L  P  E  V  S  S  L  S  L  L  L  I  R  K  Q  I  K  C  L  L  M  L  *  M  N  I  T  K  K  V  M  W  Y  G  V  M  T  T  I  S  C  S  C  Q  N  V  S  R  I  T  T  A  K  *  K  S  V  G  F  Y  T  H  P  F  H  P  R  K  Y  T  G  H  C  R  L  D  Q  S  C  S  E  Q  F  L  L  L  T  W  L   : V  F  I  P  M  T  M  Q  G  I  L  L  V  H  V  L  V  S  W  D  L  K  E  H  L  K  E  *  K  I  K  V  D  *  P  A  L  L  R :   F  L  L  V  *  I  Q  N  D  L  F  E  H  L  K  L  L  K  F  R  N  T  *  K  N  *  K  R  D  L  L  G  E  R :   L  C  *  E  L  I  A  L  I  *  L  K  E  F  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0102J11.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3981" stop="4002"/>
                    <exon start="4143" stop="4240"/>
                    <exon start="4401" stop="4789"/>
                    <exon start="5541" stop="5655"/>
                    <exon start="5844" stop="5945"/>
                    <exon start="7042" stop="7086"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>771</number_coding_nucleotides>
                  <number_encoded_amino_acids>257</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLVSALLGVKEFEARWIGWAGVNVPDEAGQRALTKALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAAYKKANQMFADVVNEHYEEGDVVWCHDYHLMFLPKCLKDYNSQMKVGWFLHTPFPSSEIHRTLPSRSELLRAVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEVTQVQEHIKELKERFAGRKVMLGVDRLDMIKGIP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="14447" PGL_stop="13846"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14447" e_stop="13846"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="14447" e_stop="13846" e_length="602"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14447" stop="13846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341091" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAATAAAGTGGTCAACATTCCCAACAGCATGACGATTTTGGATGAGCTTCTTCCAATTTCAATCGAGATGGCAAAGCGTAATCTCACAGGCATATGGAATTTCACAAACCCTGGTGTTGTGAGCCATAACGAGATCTTGGAGATGTACAAGAAATACATAAACCCAGAATTTAAATGGTCCAACTTCACACTGGAAGAGCAGGCTAAGGTAATTGTTGCACCTCGCAGTAACAATGAAATGGACGCGTCCAAGTTGAAAAAGGAGTTCCCTGAGTTGTTGTCTATCAAAGAATCATTGATCAAAAATGTGTTTGAACCAAATAGAAAAACTTCTGCATGAGAAGCCCATCAGGATGTGGAGAGCAGACTTCTGGTTTGGATCAATATGCTACTTGACTTTCTACTCTAGTTTAGTCATTATTAGCCATCATTTTAAAATATTTAGGTTCTTACTGGTGTCTAGAATTCCTACACTTGGTCTATGTTGTCAGTTTATTTATGAGTTTAATGTGCTATAAGGTGGTTTGCGTAGGAGTTACCATTCATCTTTTATCAGCTCGGGTCGATTTGTTGGATCTTAATATATATGAAATTATGATTT</gDNA_template>
            <first_frame> T  I  K  W  S  T  F  P  T  A  *  R  F  W  M  S  F  F  Q  F  Q  S  R  W  Q  S  V  I  S  Q  A  Y  G  I  S  Q  T  L  V  L  *  A  I  T  R  S  W  R  C  T  R  N  T  *  T  Q  N  L  N  G  P  T  S  H  W  K  S  R  L  R  *  L  L  H  L  A  V  T  M  K  W  T  R  P  S  *  K  R  S  S  L  S  C  C  L  S  K  N  H  *  S  K  M  C  L  N  Q  I  E  K  L  L  H  E  K  P  I  R  M  W  R  A  D  F  W  F  G  S  I  C  Y  L  T  F  Y  S  S  L  V  I  I  S  H  H  F  K  I  F  R  F  L  L  V  S  R  I  P  T  L  G  L  C  C  Q  F  I  Y  E  F  N  V  L  *  G  G  L  R  R  S  Y  H  S  S  F  I  S  S  G  R  F  V  G  S  *  Y  I  *  N  Y  D   </first_frame>
            <second_frame>  Q  *  S  G  Q  H  S  Q  Q  H  D  D  F  G  *  A  S  S  N  F  N  R  D  G  K  A  *  S  H  R  H  M  E  F  H  K  P  W  C  C  E  P  *  R  D  L  G  D  V  Q  E  I  H  K  P  R  I  *  M  V  Q  L  H  T  G  R  A  G  *  G  N  C  C  T  S  Q  *  Q  *  N  G  R  V  Q  V  E  K  G  V  P  *  V  V  V  Y  Q  R  I  I  D  Q  K  C  V  *  T  K  *  K  N  F  C  M  R  S  P  S  G  C  G  E  Q  T  S  G  L  D  Q  Y  A  T  *  L  S  T  L  V  *  S  L  L  A  I  I  L  K  Y  L  G  S  Y  W  C  L  E  F  L  H  L  V  Y  V  V  S  L  F  M  S  L  M  C  Y  K  V  V  C  V  G  V  T  I  H  L  L  S  A  R  V  D  L  L  D  L  N  I  Y  E  I  M  I  </second_frame>
            <third_frame>   N  K  V  V  N  I  P  N  S  M  T  I  L  D  E  L  L  P  I  S  I  E  M  A  K  R  N  L  T  G  I  W  N  F  T  N  P  G  V  V  S  H  N  E  I  L  E  M  Y  K  K  Y  I  N  P  E  F  K  W  S  N  F  T  L  E  E  Q  A  K  V  I  V  A  P  R  S  N  N  E  M  D  A  S  K  L  K  K  E  F  P  E  L  L  S  I  K  E  S  L  I  K  N  V  F  E  P  N  R  K  T  S  A  *  E  A  H  Q  D  V  E  S  R  L  L  V  W  I  N  M  L  L  D  F  L  L  *  F  S  H  Y  *  P  S  F  *  N  I  *  V  L  T  G  V  *  N  S  Y  T  W  S  M  L  S  V  Y  L  *  V  *  C  A  I  R  W  F  A  *  E  L  P  F  I  F  Y  Q  L  G  S  I  C  W  I  L  I  Y  M  K  L  *  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0102J11.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14445" stop="14107"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKVVNIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYKKYINPEFKWSNFTLEEQAKVIVAPRSNNEMDASKLKKEFPELLSIKESLIKNVFEPNRKTSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="15583" PGL_stop="15131"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15583" e_stop="15131"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="15583" e_stop="15131" e_length="453"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15583" stop="15131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341222" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCCTCTTCCGATTCACGGAGATGGTTCAAATGTTAGAAGTTATCTCTATTGTGAGGACGTTGCTGAGGCTTTCGAAGTTGTTCTTCACCGAGGTGATGTTGGTCATGTTTATAACATCGGGACTAAGAAAGAGAGGCGAGTGATTGATGTTGCCAAAGATATATCCAATCTTTTTAACAAGGATCCAGACACAAGCATTCAGTTTGTGGAAAACAGGCCCTTCAATGACCAGAGGTATTTCCTAGATGATCAGAAGTTGAAGAACCTGGGTTGGTCCGAGAAGACCACCTGGGAAGAGGGTCTGAAAAAAACCATGGAGTGGTATGTCAATAATCCTGATTGGTGGGGAGATGTCTCTGGGGCATTGCTTCCCCATCCTAGAATGCTGATGATGCCTGGTGGGGTAGAGAGAAATTCGGATGGAGCTGAAAAAGATGATTCTGGATCATCTG</gDNA_template>
            <first_frame> S  L  F  R  F  T  E  M  V  Q  M  L  E  V  I  S  I  V  R  T  L  L  R  L  S  K  L  F  F  T  E  V  M  L  V  M  F  I  T  S  G  L  R  K  R  G  E  *  L  M  L  P  K  I  Y  P  I  F  L  T  R  I  Q  T  Q  A  F  S  L  W  K  T  G  P  S  M  T  R  G  I  S  *  M  I  R  S  *  R  T  W  V  G  P  R  R  P  P  G  K  R  V  *  K  K  P  W  S  G  M  S  I  I  L  I  G  G  E  M  S  L  G  H  C  F  P  I  L  E  C  *  *  C  L  V  G  *  R  E  I  R  M  E  L  K  K  M  I  L  D  H  L </first_frame>
            <second_frame>  A  S  S  D  S  R  R  W  F  K  C  *  K  L  S  L  L  *  G  R  C  *  G  F  R  S  C  S  S  P  R  *  C  W  S  C  L  *  H  R  D  *  E  R  E  A  S  D  *  C  C  Q  R  Y  I  Q  S  F  *  Q  G  S  R  H  K  H  S  V  C  G  K  Q  A  L  Q  *  P  E  V  F  P  R  *  S  E  V  E  E  P  G  L  V  R  E  D  H  L  G  R  G  S  E  K  N  H  G  V  V  C  Q  *  S  *  L  V  G  R  C  L  W  G  I  A  S  P  S  *  N  A  D  D  A  W  W  G  R  E  K  F  G  W  S  *  K  R  *  F  W  I  I   </second_frame>
            <third_frame>   P  L  P  I  H  G  D  G  S  N  V  R  S  Y  L  Y  C  E  D  V  A  E  A  F  E  V  V  L  H  R  G  D  V  G  H  V  Y  N  I  G  T  K  K  E  R  R  V  I  D  V  A  K  D  I  S  N  L  F  N  K  D  P  D  T  S  I  Q  F  V  E  N  R  P  F  N  D  Q  R  Y  F  L  D  D  Q  K  L  K  N  L  G  W  S  E  K  T  T  W  E  E  G  L  K  K  T  M  E  W  Y  V  N  N  P  D  W  W  G  D  V  S  G  A  L  L  P  H  P  R  M  L  M  M  P  G  G  V  E  R  N  S  D  G  A  E  K  D  D  S  G  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0102J11.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15581" stop="15132"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLPIHGDGSNVRSYLYCEDVAEAFEVVLHRGDVGHVYNIGTKKERRVIDVAKDISNLFNKDPDTSIQFVENRPFNDQRYFLDDQKLKNLGWSEKTTWEEGLKKTMEWYVNNPDWWGDVSGALLPHPRMLMMPGGVERNSDGAEKDDSGSS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="24015" PGL_stop="26980"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24015" e_stop="24090"/>
            <exon e_start="25666" e_stop="25702"/>
            <exon e_start="25825" e_stop="26041"/>
            <exon e_start="26141" e_stop="26299"/>
            <exon e_start="26390" e_stop="26509"/>
            <exon e_start="26600" e_stop="26770"/>
            <exon e_start="26881" e_stop="26980"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.995"/>
          <exon-intron don_prob="0.832" acc_prob="0.804" e_score="1.000"/>
          <exon-intron don_prob="0.440" acc_prob="0.761" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.979" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="24015" e_stop="24090" e_length="76"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="24091" i_stop="25665" i_length="1575"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25666" e_stop="25702" e_length="37"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.988">
            <gDNA_intron_boundary i_start="25703" i_stop="25824" i_length="122"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="25825" e_stop="26041" e_length="217"/>
          </exon>
          <intron i_serial="3" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="26042" i_stop="26140" i_length="99"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="26141" e_stop="26299" e_length="159"/>
          </exon>
          <intron i_serial="4" don_prob="0.832" acc_prob="0.804">
            <gDNA_intron_boundary i_start="26300" i_stop="26389" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="26390" e_stop="26509" e_length="120"/>
          </exon>
          <intron i_serial="5" don_prob="0.440" acc_prob="0.761">
            <gDNA_intron_boundary i_start="26510" i_stop="26599" i_length="90"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="26600" e_stop="26770" e_length="171"/>
          </exon>
          <intron i_serial="6" don_prob="0.986" acc_prob="0.979">
            <gDNA_intron_boundary i_start="26771" i_stop="26880" i_length="110"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="26881" e_stop="26980" e_length="100"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24015" stop="24090"/>
              <exon start="25666" stop="25702"/>
              <exon start="25825" stop="26041"/>
              <exon start="26141" stop="26299"/>
              <exon start="26390" stop="26509"/>
              <exon start="26600" stop="26770"/>
              <exon start="26881" stop="26980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331866" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTATTCTAAAATTTGATGGTTTCTTTGGCTTCGTCTCAAGTTCTTGCAATCTGTAAAGATGCAGCTGGAATCGCCG : GGAATATCTTTGCTTTTGGATTGTTTTTGTCTCCAAT : GCCTACATTCATGAGAATAATGAGGAATCAATCAACTGAACAGTTCTCAGGGTTGCCGTACATCTATGGTCTATTGAACTGCTTAATTTGTGCCTGGTATGGCACCCCTCTCGTATCTCCCGACAATTTGTTGGTTACATCAGTTAATTCAGTTGGTGCTGTTTTTCAACTTGCCTACATTGTACTTTACGTAACGTATACAGAGAAAGAGAAAAAG : TTCAGGATGTTTGGATGGATACTCACAGTCTTTGGCCTATTTGTTATTATTGTACTTGGAAGCTTGTTTATACTTGATCTGGAACTCCGACGCATCATCATTGGCTCCCTGAGTTGTGCTTCCTTGATATCAATGTTTGCCTCCCCACTGTTAATTATT : AATCTGGTGATCAGGACCAGGAGTGTTGAATTCATGCCGTTTTGTCTGTCCCTCTCCACCTTCCTAATGAGTGCCTCTTTCCTTTTGTATGGAATTTTCAGTTCTGATCCCTTTATATAT : GTACCAAATGGCATTGGAACACTTTTAGGAGTTACACAATTGCTTTTATTTGCACATTACAGAAATTCTTCAAGAGAGGACTCTGCCGAAGGCCTTATAGTATCTTATTCATGAACTAGAATTCTAAGAAAGTAGTGTCTTTTGTGCATGAAAAAACACCCAGGAGGAAAG : GTGATCGTAAAATCTCACTTGATTGCATGGAGAAATGGTGAGAATTCCAAGCTCAAGGTGATGGCAGTTCCCTAGTCATTGAACTCGTTCAGCTATACCT</gDNA_template>
            <first_frame> L  F  *  N  L  M  V  S  L  A  S  S  Q  V  L  A  I  C  K  D  A  A  G  I  A   : G  N  I  F  A  F  G  L  F  L  S  P  M :   P  T  F  M  R  I  M  R  N  Q  S  T  E  Q  F  S  G  L  P  Y  I  Y  G  L  L  N  C  L  I  C  A  W  Y  G  T  P  L  V  S  P  D  N  L  L  V  T  S  V  N  S  V  G  A  V  F  Q  L  A  Y  I  V  L  Y  V  T  Y  T  E  K  E  K  K  :  F  R  M  F  G  W  I  L  T  V  F  G  L  F  V  I  I  V  L  G  S  L  F  I  L  D  L  E  L  R  R  I  I  I  G  S  L  S  C  A  S  L  I  S  M  F  A  S  P  L  L  I  I  :  N  L  V  I  R  T  R  S  V  E  F  M  P  F  C  L  S  L  S  T  F  L  M  S  A  S  F  L  L  Y  G  I  F  S  S  D  P  F  I  Y  :  V  P  N  G  I  G  T  L  L  G  V  T  Q  L  L  L  F  A  H  Y  R  N  S  S  R  E  D  S  A  E  G  L  I  V  S  Y  S  *  T  R  I  L  R  K  *  C  L  L  C  M  K  K  H  P  G  G  K  :  V  I  V  K  S  H  L  I  A  W  R  N  G  E  N  S  K  L  K  V  M  A  V  P  *  S  L  N  S  F  S  Y  T  </first_frame>
            <second_frame>  Y  S  K  I  *  W  F  L  W  L  R  L  K  F  L  Q  S  V  K  M  Q  L  E  S  P  :  G  I  S  L  L  L  D  C  F  C  L  Q   : C  L  H  S  *  E  *  *  G  I  N  Q  L  N  S  S  Q  G  C  R  T  S  M  V  Y  *  T  A  *  F  V  P  G  M  A  P  L  S  Y  L  P  T  I  C  W  L  H  Q  L  I  Q  L  V  L  F  F  N  L  P  T  L  Y  F  T  *  R  I  Q  R  K  R  K  S :   S  G  C  L  D  G  Y  S  Q  S  L  A  Y  L  L  L  L  Y  L  E  A  C  L  Y  L  I  W  N  S  D  A  S  S  L  A  P  *  V  V  L  P  *  Y  Q  C  L  P  P  H  C  *  L  L :   I  W  *  S  G  P  G  V  L  N  S  C  R  F  V  C  P  S  P  P  S  *  *  V  P  L  S  F  C  M  E  F  S  V  L  I  P  L  Y  M :   Y  Q  M  A  L  E  H  F  *  E  L  H  N  C  F  Y  L  H  I  T  E  I  L  Q  E  R  T  L  P  K  A  L  *  Y  L  I  H  E  L  E  F  *  E  S  S  V  F  C  A  *  K  N  T  Q  E  E  R :   *  S  *  N  L  T  *  L  H  G  E  M  V  R  I  P  S  S  R  *  W  Q  F  P  S  H  *  T  R  S  A  I  P </second_frame>
            <third_frame>   I  L  K  F  D  G  F  F  G  F  V  S  S  S  C  N  L  *  R  C  S  W  N  R  R :   E  Y  L  C  F  W  I  V  F  V  S  N  :  A  Y  I  H  E  N  N  E  E  S  I  N  *  T  V  L  R  V  A  V  H  L  W  S  I  E  L  L  N  L  C  L  V  W  H  P  S  R  I  S  R  Q  F  V  G  Y  I  S  *  F  S  W  C  C  F  S  T  C  L  H  C  T  L  R  N  V  Y  R  E  R  E  K   : V  Q  D  V  W  M  D  T  H  S  L  W  P  I  C  Y  Y  C  T  W  K  L  V  Y  T  *  S  G  T  P  T  H  H  H  W  L  P  E  L  C  F  L  D  I  N  V  C  L  P  T  V  N  Y   : *  S  G  D  Q  D  Q  E  C  *  I  H  A  V  L  S  V  P  L  H  L  P  N  E  C  L  F  P  F  V  W  N  F  Q  F  *  S  L  Y  I   : C  T  K  W  H  W  N  T  F  R  S  Y  T  I  A  F  I  C  T  L  Q  K  F  F  K  R  G  L  C  R  R  P  Y  S  I  L  F  M  N  *  N  S  K  K  V  V  S  F  V  H  E  K  T  P  R  R  K   : G  D  R  K  I  S  L  D  C  M  E  K  W  *  E  F  Q  A  Q  G  D  G  S  S  L  V  I  E  L  V  Q  L  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0102J11.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24024" stop="24090"/>
                    <exon start="25666" stop="25702"/>
                    <exon start="25825" stop="26041"/>
                    <exon start="26141" stop="26299"/>
                    <exon start="26390" stop="26509"/>
                    <exon start="26600" stop="26713"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>711</number_coding_nucleotides>
                  <number_encoded_amino_acids>237</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLMVSLASSQVLAICKDAAGIAGNIFAFGLFLSPMPTFMRIMRNQSTEQFSGLPYIYGLLNCLICAWYGTPLVSPDNLLVTSVNSVGAVFQLAYIVLYVTYTEKEKKFRMFGWILTVFGLFVIIVLGSLFILDLELRRIIIGSLSCASLISMFASPLLIINLVIRTRSVEFMPFCLSLSTFLMSASFLLYGIFSSDPFIYVPNGIGTLLGVTQLLLFAHYRNSSREDSAEGLIVSYS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="29121" PGL_stop="37061"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29121" e_stop="29213"/>
            <exon e_start="29761" e_stop="30407"/>
            <exon e_start="30486" e_stop="30649"/>
            <exon e_start="31263" e_stop="31363"/>
            <exon e_start="31514" e_stop="31653"/>
            <exon e_start="35517" e_stop="35570"/>
            <exon e_start="36710" e_stop="37061"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.988" e_score="0.994"/>
          <exon-intron don_prob="0.795" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29121" e_stop="29213" e_length="93"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="29214" i_stop="29760" i_length="547"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29761" e_stop="30407" e_length="647"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="1.000">
            <gDNA_intron_boundary i_start="30408" i_stop="30485" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="30486" e_stop="30649" e_length="164"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.988">
            <gDNA_intron_boundary i_start="30650" i_stop="31262" i_length="613"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="31263" e_stop="31363" e_length="101"/>
          </exon>
          <intron i_serial="4" don_prob="0.795" acc_prob="1.000">
            <gDNA_intron_boundary i_start="31364" i_stop="31513" i_length="150"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="31514" e_stop="31653" e_length="140"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.985">
            <gDNA_intron_boundary i_start="31654" i_stop="35516" i_length="3863"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="35517" e_stop="35570" e_length="54"/>
          </exon>
          <intron i_serial="6" don_prob="0.970" acc_prob="0.999">
            <gDNA_intron_boundary i_start="35571" i_stop="36709" i_length="1139"/>
          </intron>
          <exon e_serial="7" e_score="0.983">
            <gDNA_exon_boundary e_start="36710" e_stop="37061" e_length="352"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29121" stop="29213"/>
              <exon start="29761" stop="30407"/>
              <exon start="30486" stop="30649"/>
              <exon start="31263" stop="31363"/>
              <exon start="31514" stop="31653"/>
              <exon start="35517" stop="35570"/>
              <exon start="36710" stop="37061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317569" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCGCAGCGTTCATTCTGCTATGGCTGAATACGGTGCTTTTCACAATTAACAGTTTAACATCGCCTTCATCAGATTTGTTCAGCTCCTTTTAG : ATATATTTGATCATTTCATAACCAAGACAAGATAAAACAAAGAAGATGGCCGGTCGGAATCGCGGGCCTCCACTTCCTATGAAAGGTGGTCCTCATGGTGGACTTCCTCCACCAATGCATGAGCCCCAGTTTGCTAGGGGTCGCTTGCCGGTGCCTCATCCAGCAATGCTTGAAGAAATGAGAGAATCACAGTTTGGAATGGGCTCCAGACCAATGCCTCCACACCCTGCTGTTCTTGAGGAACACCTGGCTAGTCAGCATGATGAGATTCAAGGATTATTAGTTGATAACCAGAGGTTAGCTGCTACTCATGTAGCACTGAAACAAGAAGTAGAAGCTGCTCAATACGAACTTCAGCGAACTGATCATTATGCCCGTTCTTTGCGTATGGAAACTGATGTGCAAATGAGAGAGCTTTATGAGAAGTCTGCTAAGTTGGAAATGGATCTCCAAGTAGCTGATGGTATGAGGTCAGAGCTTATGCGAGTGCGCTCGGATATTAAGGAGTTTACTGCTGCCAGACAAGATCTTACTGTTGAGTATCAAAGAATGACACAGGATTTGAGTAGAATGACTGCAGATTTACAGCAGGCTCCAGCAATTAAAGCTGAAAGTGAAGGTCTAAAACAAGAGCTGCAGCGAGCAAG : GGCAGCTATTGAGAATGAGAAGAAAGGATACGCAGAAAACTATGAATATGGTCAGGTTATGGAGAAAAAATTGCTAGCTATGGCTCGAGAACTTGAAAAACTTCGAGCTGAGGTTGCTAATGCAGAAAAAAGAGCCCGAGCAGCAGCAGCTGTTGCGAATCCAG : GTGCAGGGTACAATGCAAATTATGGGAATCCTGAATCTGGTTATCCAGGGAATTATTATCCTGCTAATTACGGAATGAATCCTATGAACCCTGCTCATCCT : GTGCAGGGTGGTGCTGAAGGTTATTCTCAGTATGGACATGGGCCTGGTGCTTGGGGTGGTTATGATGTGCAGCGAGCTCAAGGACCCAGATAAACTAGTTAATGTAGGCTGTCACACGGTGTTGTGCCTACTACTCTCTG : GTTATAATCAATGTCTAAATGAGTTCATCGACGACACAAGCATGAAATTTTTGG : GCAGAATCCGCGGCTAAAGTGGTTACTTATATTCAGTCTGGCAAGGCAATCGATTTATCTCAGTTATTTTGCAACTTGTGCTATCAAGTGTAGCAGTTAACAGCAATGTAGATTTTCCAGCACTACCTGTTTTTTGAACAAATTTCTGGGCATATTTATATCTCCTTGTGAATTGTAATGCTATTTTGTGGCTCCTTTTTCAGTCCTACTCCAAATTAGTTATCCTACCTTGTTGGCAATCAAAAATAGTGAAAATTTGATTATCAAAAAAATTCTTACTGTATGGTATTTTAAAAACTTGACTAAAAAAAATTCGTACTAGTATTTTATATATGGTTTTAAAAACCGTTAG</gDNA_template>
            <first_frame> S  A  A  F  I  L  L  W  L  N  T  V  L  F  T  I  N  S  L  T  S  P  S  S  D  L  F  S  S  F  *  :  I  Y  L  I  I  S  *  P  R  Q  D  K  T  K  K  M  A  G  R  N  R  G  P  P  L  P  M  K  G  G  P  H  G  G  L  P  P  P  M  H  E  P  Q  F  A  R  G  R  L  P  V  P  H  P  A  M  L  E  E  M  R  E  S  Q  F  G  M  G  S  R  P  M  P  P  H  P  A  V  L  E  E  H  L  A  S  Q  H  D  E  I  Q  G  L  L  V  D  N  Q  R  L  A  A  T  H  V  A  L  K  Q  E  V  E  A  A  Q  Y  E  L  Q  R  T  D  H  Y  A  R  S  L  R  M  E  T  D  V  Q  M  R  E  L  Y  E  K  S  A  K  L  E  M  D  L  Q  V  A  D  G  M  R  S  E  L  M  R  V  R  S  D  I  K  E  F  T  A  A  R  Q  D  L  T  V  E  Y  Q  R  M  T  Q  D  L  S  R  M  T  A  D  L  Q  Q  A  P  A  I  K  A  E  S  E  G  L  K  Q  E  L  Q  R  A  R :   A  A  I  E  N  E  K  K  G  Y  A  E  N  Y  E  Y  G  Q  V  M  E  K  K  L  L  A  M  A  R  E  L  E  K  L  R  A  E  V  A  N  A  E  K  R  A  R  A  A  A  A  V  A  N  P   : G  A  G  Y  N  A  N  Y  G  N  P  E  S  G  Y  P  G  N  Y  Y  P  A  N  Y  G  M  N  P  M  N  P  A  H  P  :  V  Q  G  G  A  E  G  Y  S  Q  Y  G  H  G  P  G  A  W  G  G  Y  D  V  Q  R  A  Q  G  P  R  *  T  S  *  C  R  L  S  H  G  V  V  P  T  T  L  W :   L  *  S  M  S  K  *  V  H  R  R  H  K  H  E  I  F  G :   Q  N  P  R  L  K  W  L  L  I  F  S  L  A  R  Q  S  I  Y  L  S  Y  F  A  T  C  A  I  K  C  S  S  *  Q  Q  C  R  F  S  S  T  T  C  F  L  N  K  F  L  G  I  F  I  S  P  C  E  L  *  C  Y  F  V  A  P  F  S  V  L  L  Q  I  S  Y  P  T  L  L  A  I  K  N  S  E  N  L  I  I  K  K  I  L  T  V  W  Y  F  K  N  L  T  K  K  N  S  Y  *  Y  F  I  Y  G  F  K  N  R  * </first_frame>
            <second_frame>  A  Q  R  S  F  C  Y  G  *  I  R  C  F  S  Q  L  T  V  *  H  R  L  H  Q  I  C  S  A  P  F  R :   Y  I  *  S  F  H  N  Q  D  K  I  K  Q  R  R  W  P  V  G  I  A  G  L  H  F  L  *  K  V  V  L  M  V  D  F  L  H  Q  C  M  S  P  S  L  L  G  V  A  C  R  C  L  I  Q  Q  C  L  K  K  *  E  N  H  S  L  E  W  A  P  D  Q  C  L  H  T  L  L  F  L  R  N  T  W  L  V  S  M  M  R  F  K  D  Y  *  L  I  T  R  G  *  L  L  L  M  *  H  *  N  K  K  *  K  L  L  N  T  N  F  S  E  L  I  I  M  P  V  L  C  V  W  K  L  M  C  K  *  E  S  F  M  R  S  L  L  S  W  K  W  I  S  K  *  L  M  V  *  G  Q  S  L  C  E  C  A  R  I  L  R  S  L  L  L  P  D  K  I  L  L  L  S  I  K  E  *  H  R  I  *  V  E  *  L  Q  I  Y  S  R  L  Q  Q  L  K  L  K  V  K  V  *  N  K  S  C  S  E  Q   : G  Q  L  L  R  M  R  R  K  D  T  Q  K  T  M  N  M  V  R  L  W  R  K  N  C  *  L  W  L  E  N  L  K  N  F  E  L  R  L  L  M  Q  K  K  E  P  E  Q  Q  Q  L  L  R  I  Q  :  V  Q  G  T  M  Q  I  M  G  I  L  N  L  V  I  Q  G  I  I  I  L  L  I  T  E  *  I  L  *  T  L  L  I  L :   C  R  V  V  L  K  V  I  L  S  M  D  M  G  L  V  L  G  V  V  M  M  C  S  E  L  K  D  P  D  K  L  V  N  V  G  C  H  T  V  L  C  L  L  L  S   : G  Y  N  Q  C  L  N  E  F  I  D  D  T  S  M  K  F  L   : G  R  I  R  G  *  S  G  Y  L  Y  S  V  W  Q  G  N  R  F  I  S  V  I  L  Q  L  V  L  S  S  V  A  V  N  S  N  V  D  F  P  A  L  P  V  F  *  T  N  F  W  A  Y  L  Y  L  L  V  N  C  N  A  I  L  W  L  L  F  Q  S  Y  S  K  L  V  I  L  P  C  W  Q  S  K  I  V  K  I  *  L  S  K  K  F  L  L  Y  G  I  L  K  T  *  L  K  K  I  R  T  S  I  L  Y  M  V  L  K  T  V   </second_frame>
            <third_frame>   R  S  V  H  S  A  M  A  E  Y  G  A  F  H  N  *  Q  F  N  I  A  F  I  R  F  V  Q  L  L  L   : D  I  F  D  H  F  I  T  K  T  R  *  N  K  E  D  G  R  S  E  S  R  A  S  T  S  Y  E  R  W  S  S  W  W  T  S  S  T  N  A  *  A  P  V  C  *  G  S  L  A  G  A  S  S  S  N  A  *  R  N  E  R  I  T  V  W  N  G  L  Q  T  N  A  S  T  P  C  C  S  *  G  T  P  G  *  S  A  *  *  D  S  R  I  I  S  *  *  P  E  V  S  C  Y  S  C  S  T  E  T  R  S  R  S  C  S  I  R  T  S  A  N  *  S  L  C  P  F  F  A  Y  G  N  *  C  A  N  E  R  A  L  *  E  V  C  *  V  G  N  G  S  P  S  S  *  W  Y  E  V  R  A  Y  A  S  A  L  G  Y  *  G  V  Y  C  C  Q  T  R  S  Y  C  *  V  S  K  N  D  T  G  F  E  *  N  D  C  R  F  T  A  G  S  S  N  *  S  *  K  *  R  S  K  T  R  A  A  A  S  K  :  G  S  Y  *  E  *  E  E  R  I  R  R  K  L  *  I  W  S  G  Y  G  E  K  I  A  S  Y  G  S  R  T  *  K  T  S  S  *  G  C  *  C  R  K  K  S  P  S  S  S  S  C  C  E  S  R :   C  R  V  Q  C  K  L  W  E  S  *  I  W  L  S  R  E  L  L  S  C  *  L  R  N  E  S  Y  E  P  C  S  S   : C  A  G  W  C  *  R  L  F  S  V  W  T  W  A  W  C  L  G  W  L  *  C  A  A  S  S  R  T  Q  I  N  *  L  M  *  A  V  T  R  C  C  A  Y  Y  S  L  :  V  I  I  N  V  *  M  S  S  S  T  T  Q  A  *  N  F  W  :  A  E  S  A  A  K  V  V  T  Y  I  Q  S  G  K  A  I  D  L  S  Q  L  F  C  N  L  C  Y  Q  V  *  Q  L  T  A  M  *  I  F  Q  H  Y  L  F  F  E  Q  I  S  G  H  I  Y  I  S  L  *  I  V  M  L  F  C  G  S  F  F  S  P  T  P  N  *  L  S  Y  L  V  G  N  Q  K  *  *  K  F  D  Y  Q  K  N  S  Y  C  M  V  F  *  K  L  D  *  K  K  F  V  L  V  F  Y  I  W  F  *  K  P  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0102J11.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29782" stop="30407"/>
                    <exon start="30486" stop="30649"/>
                    <exon start="31263" stop="31363"/>
                    <exon start="31514" stop="31606"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>981</number_coding_nucleotides>
                  <number_encoded_amino_acids>327</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PRQDKTKKMAGRNRGPPLPMKGGPHGGLPPPMHEPQFARGRLPVPHPAMLEEMRESQFGMGSRPMPPHPAVLEEHLASQHDEIQGLLVDNQRLAATHVALKQEVEAAQYELQRTDHYARSLRMETDVQMRELYEKSAKLEMDLQVADGMRSELMRVRSDIKEFTAARQDLTVEYQRMTQDLSRMTADLQQAPAIKAESEGLKQELQRARAAIENEKKGYAENYEYGQVMEKKLLAMARELEKLRAEVANAEKRARAAAAVANPGAGYNANYGNPESGYPGNYYPANYGMNPMNPAHPVQGGAEGYSQYGHGPGAWGGYDVQRAQGPR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="34336" e_stop="34969"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="34336" e_stop="34969" e_length="634"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34336" stop="34969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342317" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATGTTTGACATTAAAAGATTACAAATTATAATCCCTCTCTCTGCTAAAAGGATATTGATTTTTCTGTATATCCAAGTGTTGTAATTAAATGTCGTAAATTAGTTTAGCTGGTAAGGCAGACACTTTTCTTAGAGCTAATTCAATCGCATAAGACAGTTTCCATGTGCCATTTTACCTTTACCATCTTGTCAGCTTATTACCTTTTTTACTTTTACCATCTTATCTCATAAAATCTTGATGACTTTTGACTTAAACGGGCATTGAAATATTTGGGGCTCAAAGTCTGTTTGCAAATTTGTGATGAGCACTTCTCTTGTACCGTGTTGGTGTATCAAAGTTGATAGGTACAGAGGGACATTCTGCTATGCATTGTGTGCCAAAAATAACTTCAATCAAATGTGGTATATGGTAGCTTTCTAGTAGCGTTTGTTGTGATCCGTTCTCATTCCCTTATATTTGCTGGGAGGAGTTGCAATTTCTGTATGAACTTGCACTTGTGGATGGAAATATGAGATTTACGATAATTCATTTAACCCAAGATGGAGTTTTAAGTTATCCCAGAGCTCTTCGAAGTTCGAAGTATGACCTTAAATTGGGTTTAAAGGCAAACATTTTGAAGTGCTCTTACCTGTT</gDNA_template>
            <first_frame> Y  V  *  H  *  K  I  T  N  Y  N  P  S  L  C  *  K  D  I  D  F  S  V  Y  P  S  V  V  I  K  C  R  K  L  V  *  L  V  R  Q  T  L  F  L  E  L  I  Q  S  H  K  T  V  S  M  C  H  F  T  F  T  I  L  S  A  Y  Y  L  F  Y  F  Y  H  L  I  S  *  N  L  D  D  F  *  L  K  R  A  L  K  Y  L  G  L  K  V  C  L  Q  I  C  D  E  H  F  S  C  T  V  L  V  Y  Q  S  *  *  V  Q  R  D  I  L  L  C  I  V  C  Q  K  *  L  Q  S  N  V  V  Y  G  S  F  L  V  A  F  V  V  I  R  S  H  S  L  I  F  A  G  R  S  C  N  F  C  M  N  L  H  L  W  M  E  I  *  D  L  R  *  F  I  *  P  K  M  E  F  *  V  I  P  E  L  F  E  V  R  S  M  T  L  N  W  V  *  R  Q  T  F  *  S  A  L  T  C  </first_frame>
            <second_frame>  M  F  D  I  K  R  L  Q  I  I  I  P  L  S  A  K  R  I  L  I  F  L  Y  I  Q  V  L  *  L  N  V  V  N  *  F  S  W  *  G  R  H  F  S  *  S  *  F  N  R  I  R  Q  F  P  C  A  I  L  P  L  P  S  C  Q  L  I  T  F  F  T  F  T  I  L  S  H  K  I  L  M  T  F  D  L  N  G  H  *  N  I  W  G  S  K  S  V  C  K  F  V  M  S  T  S  L  V  P  C  W  C  I  K  V  D  R  Y  R  G  T  F  C  Y  A  L  C  A  K  N  N  F  N  Q  M  W  Y  M  V  A  F  *  *  R  L  L  *  S  V  L  I  P  L  Y  L  L  G  G  V  A  I  S  V  *  T  C  T  C  G  W  K  Y  E  I  Y  D  N  S  F  N  P  R  W  S  F  K  L  S  Q  S  S  S  K  F  E  V  *  P  *  I  G  F  K  G  K  H  F  E  V  L  L  P  V </second_frame>
            <third_frame>   C  L  T  L  K  D  Y  K  L  *  S  L  S  L  L  K  G  Y  *  F  F  C  I  S  K  C  C  N  *  M  S  *  I  S  L  A  G  K  A  D  T  F  L  R  A  N  S  I  A  *  D  S  F  H  V  P  F  Y  L  Y  H  L  V  S  L  L  P  F  L  L  L  P  S  Y  L  I  K  S  *  *  L  L  T  *  T  G  I  E  I  F  G  A  Q  S  L  F  A  N  L  *  *  A  L  L  L  Y  R  V  G  V  S  K  L  I  G  T  E  G  H  S  A  M  H  C  V  P  K  I  T  S  I  K  C  G  I  W  *  L  S  S  S  V  C  C  D  P  F  S  F  P  Y  I  C  W  E  E  L  Q  F  L  Y  E  L  A  L  V  D  G  N  M  R  F  T  I  I  H  L  T  Q  D  G  V  L  S  Y  P  R  A  L  R  S  S  K  Y  D  L  K  L  G  L  K  A  N  I  L  K  C  S  Y  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0102J11.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34749" stop="34967"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSSSVCCDPFSFPYICWEELQFLYELALVDGNMRFTIIHLTQDGVLSYPRALRSSKYDLKLGLKANILKCSYL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="44556" PGL_stop="41760"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44556" e_stop="44407"/>
            <exon e_start="44315" e_stop="44160"/>
            <exon e_start="44037" e_stop="43826"/>
            <exon e_start="43725" e_stop="43624"/>
            <exon e_start="43296" e_stop="43154"/>
            <exon e_start="42766" e_stop="42056"/>
            <exon e_start="41776" e_stop="41760"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.661" acc_prob="0.141" e_score="0.987"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.996" e_score="0.991"/>
          <exon-intron don_prob="0.986" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.929" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.827" e_score="1.000"/>
          <exon-only e_score="0.706"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="44556" e_stop="44407" e_length="150"/>
          </exon>
          <intron i_serial="1" don_prob="0.661" acc_prob="0.141">
            <gDNA_intron_boundary i_start="44406" i_stop="44316" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44315" e_stop="44160" e_length="156"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="44159" i_stop="44038" i_length="122"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="44037" e_stop="43826" e_length="212"/>
          </exon>
          <intron i_serial="3" don_prob="0.984" acc_prob="0.996">
            <gDNA_intron_boundary i_start="43825" i_stop="43726" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="43725" e_stop="43624" e_length="102"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.997">
            <gDNA_intron_boundary i_start="43623" i_stop="43297" i_length="327"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="43296" e_stop="43154" e_length="143"/>
          </exon>
          <intron i_serial="5" don_prob="0.929" acc_prob="0.998">
            <gDNA_intron_boundary i_start="43153" i_stop="42767" i_length="387"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="42766" e_stop="42056" e_length="711"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.827">
            <gDNA_intron_boundary i_start="42055" i_stop="41777" i_length="279"/>
          </intron>
          <exon e_serial="7" e_score="0.706">
            <gDNA_exon_boundary e_start="41776" e_stop="41760" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44556" stop="44407"/>
              <exon start="44315" stop="44160"/>
              <exon start="44037" stop="43826"/>
              <exon start="43725" stop="43624"/>
              <exon start="43296" stop="43154"/>
              <exon start="42766" stop="42056"/>
              <exon start="41776" stop="41760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322516" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATACACCTGCTATTGATATCTGGAGCATCGGGTGCATTTTTGCGGAGGTTTTGACGGGGAAACCATTATTTCCGGGCAAAAGTGTTGTTCACCAGTTGGATTTGATTACTGATCTTCTGGGGACGCCATCAGTTGATATTGTATCTGGG : GTTCGTAATGAAAAGGCAAGGAAGTACTTGACAGATATGAAGAAAAAAAGCCCAGTTCCTTTTACTGAGAAATTTCGAAAAGCAGATCCTTTGGCACTTCGACTGTTGCAGAGGTTGTTAGCATTTGATCCAAAGGATCGCCCAACTGCTGAAGAG : GCTTTGGCTGATCCGTACTTCAAGGGACTGGCCAAGATTGAGAGGGAACCTTCTAGTCAACCAATCTCGAAGCTGGAGTTTGAGTTTGAGCGACGAAGGGTCACAAAGGATGACATTCGTGAACTAATATTTAGGGAGATACTTGAGTATCATCCTCAACTTCTGAAGGACTACATGGCTGGAAATAGTGGTGCAAATTTTATCTATCCTAG : TGCCATTGGTAATTTCAGAAGGCAATTTGCTTATCTAGAGGAGAATAGTGGTAAAAGTGGCCCAGTAATACCTCCTGGTCGAAAGCACGTCTCTCTCCCGCG : ATCTACTGTAAATTCCAGTACCATCCCCCCCAGAACACAGCAGAATCCTATGTTTGATCATAGACAAGTAACAGAAAAGGCAACTGCTGGCGTCAGAGTCTCAGACCCGAAGGTTTTGCGACCACCACCTCGAGTACCCACAG : CCAAACCTGGAAGAGTTTTAGGACCAGTATATGATGGTGACAGAAGCATCAAAGAAGTCACTGATGGAAGAGTATATGCCCAGAACTCTGTCGTCCAACCTCATGGCATGTCTCCACAATATCTGTTCAGGAGTAACTCTACACATCTAGAGAAGTGTGGGACAGAAGCAGAGAAGGACCGCTCTCAAGTTAAACAGCAACATGGCCAGTGCATGGTTGCCAAGTCGTCCGCTAGTATGAGTTTTGAGATGAACACTAACCCATATTACCATACACAGGCAAGGGTAGCACAGTTGGGAGGTCAAATCGCCATGGATGCAAAATTACTACAGGCACAAACACAGTTTGGTGCAGTCGGTGCTGCAGCTGTCGCTGTTGCTGCTCACAGAGAGGTCGGCACCGTTCAGTATGGTCTATAACCTAGTCGATACTATTGTTTGATGGTTCTTTGAATCAAGTGAGGACATCCACCTTGCAGTGAGACAGTTCACGATATGCATTTTCCCTCAAATCAATCAGCATGGGAGATTTGAAGAGGGATCTGTTAACCCGGTTAATGATTTTACCATTTATTAGTTGTCAGGGTCTCTAAATAGGTATTCTTTAGGTTCAGGTTGCCCTGTTGAGTTAGTATTTATGCCCCCTTGTACATATATATATATATAGGCGCGATGCATTAATTGATATAATGAAGAAAAAATATTGTTCTTC : CGAGAAATATACAAAAA</gDNA_template>
            <first_frame> Y  T  P  A  I  D  I  W  S  I  G  C  I  F  A  E  V  L  T  G  K  P  L  F  P  G  K  S  V  V  H  Q  L  D  L  I  T  D  L  L  G  T  P  S  V  D  I  V  S  G  :  V  R  N  E  K  A  R  K  Y  L  T  D  M  K  K  K  S  P  V  P  F  T  E  K  F  R  K  A  D  P  L  A  L  R  L  L  Q  R  L  L  A  F  D  P  K  D  R  P  T  A  E  E  :  A  L  A  D  P  Y  F  K  G  L  A  K  I  E  R  E  P  S  S  Q  P  I  S  K  L  E  F  E  F  E  R  R  R  V  T  K  D  D  I  R  E  L  I  F  R  E  I  L  E  Y  H  P  Q  L  L  K  D  Y  M  A  G  N  S  G  A  N  F  I  Y  P  S :   A  I  G  N  F  R  R  Q  F  A  Y  L  E  E  N  S  G  K  S  G  P  V  I  P  P  G  R  K  H  V  S  L  P  R :   S  T  V  N  S  S  T  I  P  P  R  T  Q  Q  N  P  M  F  D  H  R  Q  V  T  E  K  A  T  A  G  V  R  V  S  D  P  K  V  L  R  P  P  P  R  V  P  T   : A  K  P  G  R  V  L  G  P  V  Y  D  G  D  R  S  I  K  E  V  T  D  G  R  V  Y  A  Q  N  S  V  V  Q  P  H  G  M  S  P  Q  Y  L  F  R  S  N  S  T  H  L  E  K  C  G  T  E  A  E  K  D  R  S  Q  V  K  Q  Q  H  G  Q  C  M  V  A  K  S  S  A  S  M  S  F  E  M  N  T  N  P  Y  Y  H  T  Q  A  R  V  A  Q  L  G  G  Q  I  A  M  D  A  K  L  L  Q  A  Q  T  Q  F  G  A  V  G  A  A  A  V  A  V  A  A  H  R  E  V  G  T  V  Q  Y  G  L  *  P  S  R  Y  Y  C  L  M  V  L  *  I  K  *  G  H  P  P  C  S  E  T  V  H  D  M  H  F  P  S  N  Q  S  A  W  E  I  *  R  G  I  C  *  P  G  *  *  F  Y  H  L  L  V  V  R  V  S  K  *  V  F  F  R  F  R  L  P  C  *  V  S  I  Y  A  P  L  Y  I  Y  I  Y  I  G  A  M  H  *  L  I  *  *  R  K  N  I  V  L   : P  R  N  I  Q  K </first_frame>
            <second_frame>  I  H  L  L  L  I  S  G  A  S  G  A  F  L  R  R  F  *  R  G  N  H  Y  F  R  A  K  V  L  F  T  S  W  I  *  L  L  I  F  W  G  R  H  Q  L  I  L  Y  L  G :   F  V  M  K  R  Q  G  S  T  *  Q  I  *  R  K  K  A  Q  F  L  L  L  R  N  F  E  K  Q  I  L  W  H  F  D  C  C  R  G  C  *  H  L  I  Q  R  I  A  Q  L  L  K  R :   L  W  L  I  R  T  S  R  D  W  P  R  L  R  G  N  L  L  V  N  Q  S  R  S  W  S  L  S  L  S  D  E  G  S  Q  R  M  T  F  V  N  *  Y  L  G  R  Y  L  S  I  I  L  N  F  *  R  T  T  W  L  E  I  V  V  Q  I  L  S  I  L   : V  P  L  V  I  S  E  G  N  L  L  I  *  R  R  I  V  V  K  V  A  Q  *  Y  L  L  V  E  S  T  S  L  S  R   : D  L  L  *  I  P  V  P  S  P  P  E  H  S  R  I  L  C  L  I  I  D  K  *  Q  K  R  Q  L  L  A  S  E  S  Q  T  R  R  F  C  D  H  H  L  E  Y  P  Q  :  P  N  L  E  E  F  *  D  Q  Y  M  M  V  T  E  A  S  K  K  S  L  M  E  E  Y  M  P  R  T  L  S  S  N  L  M  A  C  L  H  N  I  C  S  G  V  T  L  H  I  *  R  S  V  G  Q  K  Q  R  R  T  A  L  K  L  N  S  N  M  A  S  A  W  L  P  S  R  P  L  V  *  V  L  R  *  T  L  T  H  I  T  I  H  R  Q  G  *  H  S  W  E  V  K  S  P  W  M  Q  N  Y  Y  R  H  K  H  S  L  V  Q  S  V  L  Q  L  S  L  L  L  L  T  E  R  S  A  P  F  S  M  V  Y  N  L  V  D  T  I  V  *  W  F  F  E  S  S  E  D  I  H  L  A  V  R  Q  F  T  I  C  I  F  P  Q  I  N  Q  H  G  R  F  E  E  G  S  V  N  P  V  N  D  F  T  I  Y  *  L  S  G  S  L  N  R  Y  S  L  G  S  G  C  P  V  E  L  V  F  M  P  P  C  T  Y  I  Y  I  *  A  R  C  I  N  *  Y  N  E  E  K  I  L  F  F  :  R  E  I  Y  K   </second_frame>
            <third_frame>   Y  T  C  Y  *  Y  L  E  H  R  V  H  F  C  G  G  F  D  G  E  T  I  I  S  G  Q  K  C  C  S  P  V  G  F  D  Y  *  S  S  G  D  A  I  S  *  Y  C  I  W   : G  S  *  *  K  G  K  E  V  L  D  R  Y  E  E  K  K  P  S  S  F  Y  *  E  I  S  K  S  R  S  F  G  T  S  T  V  A  E  V  V  S  I  *  S  K  G  S  P  N  C  *  R   : G  F  G  *  S  V  L  Q  G  T  G  Q  D  *  E  G  T  F  *  S  T  N  L  E  A  G  V  *  V  *  A  T  K  G  H  K  G  *  H  S  *  T  N  I  *  G  D  T  *  V  S  S  S  T  S  E  G  L  H  G  W  K  *  W  C  K  F  Y  L  S  *  :  C  H  W  *  F  Q  K  A  I  C  L  S  R  G  E  *  W  *  K  W  P  S  N  T  S  W  S  K  A  R  L  S  P  A  :  I  Y  C  K  F  Q  Y  H  P  P  Q  N  T  A  E  S  Y  V  *  S  *  T  S  N  R  K  G  N  C  W  R  Q  S  L  R  P  E  G  F  A  T  T  T  S  S  T  H  S :   Q  T  W  K  S  F  R  T  S  I  *  W  *  Q  K  H  Q  R  S  H  *  W  K  S  I  C  P  E  L  C  R  P  T  S  W  H  V  S  T  I  S  V  Q  E  *  L  Y  T  S  R  E  V  W  D  R  S  R  E  G  P  L  S  S  *  T  A  T  W  P  V  H  G  C  Q  V  V  R  *  Y  E  F  *  D  E  H  *  P  I  L  P  Y  T  G  K  G  S  T  V  G  R  S  N  R  H  G  C  K  I  T  T  G  T  N  T  V  W  C  S  R  C  C  S  C  R  C  C  C  S  Q  R  G  R  H  R  S  V  W  S  I  T  *  S  I  L  L  F  D  G  S  L  N  Q  V  R  T  S  T  L  Q  *  D  S  S  R  Y  A  F  S  L  K  S  I  S  M  G  D  L  K  R  D  L  L  T  R  L  M  I  L  P  F  I  S  C  Q  G  L  *  I  G  I  L  *  V  Q  V  A  L  L  S  *  Y  L  C  P  L  V  H  I  Y  I  Y  R  R  D  A  L  I  D  I  M  K  K  K  Y  C  S  S :   E  K  Y  T  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0102J11.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44556" stop="44407"/>
                    <exon start="44315" stop="44160"/>
                    <exon start="44037" stop="43826"/>
                    <exon start="43725" stop="43624"/>
                    <exon start="43296" stop="43154"/>
                    <exon start="42766" stop="42348"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1179</number_coding_nucleotides>
                  <number_encoded_amino_acids>393</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YTPAIDIWSIGCIFAEVLTGKPLFPGKSVVHQLDLITDLLGTPSVDIVSGVRNEKARKYLTDMKKKSPVPFTEKFRKADPLALRLLQRLLAFDPKDRPTAEEALADPYFKGLAKIEREPSSQPISKLEFEFERRRVTKDDIRELIFREILEYHPQLLKDYMAGNSGANFIYPSAIGNFRRQFAYLEENSGKSGPVIPPGRKHVSLPRSTVNSSTIPPRTQQNPMFDHRQVTEKATAGVRVSDPKVLRPPPRVPTAKPGRVLGPVYDGDRSIKEVTDGRVYAQNSVVQPHGMSPQYLFRSNSTHLEKCGTEAEKDRSQVKQQHGQCMVAKSSASMSFEMNTNPYYHTQARVAQLGGQIAMDAKLLQAQTQFGAVGAAAVAVAAHREVGTVQYGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="47581" PGL_stop="46038"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47581" e_stop="47154"/>
            <exon e_start="46152" e_stop="46038"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.919" acc_prob="0.981" e_score="0.998"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="47581" e_stop="47154" e_length="428"/>
          </exon>
          <intron i_serial="1" don_prob="0.919" acc_prob="0.981">
            <gDNA_intron_boundary i_start="47153" i_stop="46153" i_length="1001"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46152" e_stop="46038" e_length="115"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47581" stop="47154"/>
              <exon start="46152" stop="46038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330937" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAATTGGCCTCCTTGTTGCTCTCTCTCTCTTCTCCATCTTTCAAAACCCGAAAAAGGGTTACTTCTTTCTACACCCTTCGTTCATTTTCTGTTCATTTTTTTGTAGGATTTTAGGCTCAACTGATACTAATTTTGTGTATAAAAATCATACTGTTTTCTTCAAAAGTGGGGTTCGCTCTTTGTTAGTACGTTTCAATACGTTGTTGACGTCGGTGGGGCGAAGTGCTCTGCTGATTCTCTGATTTATTCCATTTGGGGTTGTTCAGATTTGTTTTATTTTTGGATATTTTTGATCTGATCTTCTGTATAAGATCAGGGGAACCTAGAGAAGAAAAGGGTACCTTCAGATATCCTCTTTTTTTGAATTTATTCGTTACCCAGATTGTTTAAAGTCTTCAAAAGATGCAGCAAGATCAGCGCAAGAAG : AGTTCCAAAGAAGTGGAGTTCTTCACCGAGTACGGTGATGCTAATAGGTATAAAATTTTGGAAGTTATAGGCAAGGGAAGTTATGGAGTAGTTTGTGCTGCAATTGACACTCATA</gDNA_template>
            <first_frame> F  N  W  P  P  C  C  S  L  S  L  L  H  L  S  K  P  E  K  G  L  L  L  S  T  P  F  V  H  F  L  F  I  F  L  *  D  F  R  L  N  *  Y  *  F  C  V  *  K  S  Y  C  F  L  Q  K  W  G  S  L  F  V  S  T  F  Q  Y  V  V  D  V  G  G  A  K  C  S  A  D  S  L  I  Y  S  I  W  G  C  S  D  L  F  Y  F  W  I  F  L  I  *  S  S  V  *  D  Q  G  N  L  E  K  K  R  V  P  S  D  I  L  F  F  *  I  Y  S  L  P  R  L  F  K  V  F  K  R  C  S  K  I  S  A  R  R :   V  P  K  K  W  S  S  S  P  S  T  V  M  L  I  G  I  K  F  W  K  L  *  A  R  E  V  M  E  *  F  V  L  Q  L  T  L  I </first_frame>
            <second_frame>  S  I  G  L  L  V  A  L  S  L  F  S  I  F  Q  N  P  K  K  G  Y  F  F  L  H  P  S  F  I  F  C  S  F  F  C  R  I  L  G  S  T  D  T  N  F  V  Y  K  N  H  T  V  F  F  K  S  G  V  R  S  L  L  V  R  F  N  T  L  L  T  S  V  G  R  S  A  L  L  I  L  *  F  I  P  F  G  V  V  Q  I  C  F  I  F  G  Y  F  *  S  D  L  L  Y  K  I  R  G  T  *  R  R  K  G  Y  L  Q  I  S  S  F  F  E  F  I  R  Y  P  D  C  L  K  S  S  K  D  A  A  R  S  A  Q  E   : E  F  Q  R  S  G  V  L  H  R  V  R  *  C  *  *  V  *  N  F  G  S  Y  R  Q  G  K  L  W  S  S  L  C  C  N  *  H  S   </second_frame>
            <third_frame>   Q  L  A  S  L  L  L  S  L  S  S  P  S  F  K  T  R  K  R  V  T  S  F  Y  T  L  R  S  F  S  V  H  F  F  V  G  F  *  A  Q  L  I  L  I  L  C  I  K  I  I  L  F  S  S  K  V  G  F  A  L  C  *  Y  V  S  I  R  C  *  R  R  W  G  E  V  L  C  *  F  S  D  L  F  H  L  G  L  F  R  F  V  L  F  L  D  I  F  D  L  I  F  C  I  R  S  G  E  P  R  E  E  K  G  T  F  R  Y  P  L  F  L  N  L  F  V  T  Q  I  V  *  S  L  Q  K  M  Q  Q  D  Q  R  K  K  :  S  S  K  E  V  E  F  F  T  E  Y  G  D  A  N  R  Y  K  I  L  E  V  I  G  K  G  S  Y  G  V  V  C  A  A  I  D  T  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0102J11.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47580" stop="47338"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIGLLVALSLFSIFQNPKKGYFFLHPSFIFCSFFCRILGSTDTNFVYKNHTVFFKSGVRSLLVRFNTLLTSVGRSALLIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="55565" PGL_stop="53163"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55565" e_stop="54948"/>
            <exon e_start="54704" e_stop="54567"/>
            <exon e_start="53960" e_stop="53911"/>
            <exon e_start="53813" e_stop="53163"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.720" acc_prob="0.951" e_score="0.992"/>
          <exon-intron don_prob="0.961" acc_prob="0.873" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.678" e_score="0.980"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="55565" e_stop="54948" e_length="618"/>
          </exon>
          <intron i_serial="1" don_prob="0.720" acc_prob="0.951">
            <gDNA_intron_boundary i_start="54947" i_stop="54705" i_length="243"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54704" e_stop="54567" e_length="138"/>
          </exon>
          <intron i_serial="2" don_prob="0.961" acc_prob="0.873">
            <gDNA_intron_boundary i_start="54566" i_stop="53961" i_length="606"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="53960" e_stop="53911" e_length="50"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.678">
            <gDNA_intron_boundary i_start="53910" i_stop="53814" i_length="97"/>
          </intron>
          <exon e_serial="4" e_score="0.994">
            <gDNA_exon_boundary e_start="53813" e_stop="53163" e_length="651"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55565" stop="54948"/>
              <exon start="54704" stop="54567"/>
              <exon start="53960" stop="53911"/>
              <exon start="53813" stop="53163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324539" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAATTCAGGACATATGCTTGCAGCATTTCACTTGATTTAGACTGTATCCGTGACCCAAAATAACTATCTGAGTTACATTTTCGGGTTCTGAGTCTAAAAGTCCCTTTTGATTTGTTATAGTTACCTGCCCTATTGATTTTGCAAAATGTAGTGGTCCTGACAGACTTTTGCTTGGTGAGTCATAAATGTCTGGTGATGGCTTTGCTTCTCCATATAAATATGATGGATTAATGCAGTGTTGTTTGTGGGGCTCTGGTTTGGTCCACCGACCTAGTAGGACATTCCTAGTTAGATTTAGCTACTTTTCCTGATTTCTTGCTCAATGTTTGGGGTGTCACAAATTACAATAGATATCTGTAAATTTGTCACTATATCAATTTGATTTTGTGGAATGATGTTTCCACGCTCTTTTGTTTCCCAGGGAGTTAACCAGGTCCTTGTTAAGCTTGGGGCCAATGGATCTGCTCTTTTCACCAAAGGAGAGGAACCCTTGCGGCAACCCATTATTAAAGCTGCAAAAGTCATTGATACAACAGGAGCTGGTGACACTTTTACAGCTGCTTTTGCAGTGGCCCTAGTGGAGGGTAAATCTAAAGAGGAATGTTTGAGATTTGCTG : CTGCAGCCGCTTCTCTATGTGTTCAAGTGAAAGGAGCCATTCCAAGCATGCCTGAAAAGAGAGCAGTGTTCAATCTTCTTCAGTCAGCTTGAAGACTTGGAGTTTCCTTTATCATCTCCTTGTACAAAAAAATAAGAG : GTTCTCAGGTTGATGAGTTGAAGTTCCGGAGTCTTGATTTTCATGAAGAG : GACTGCCGTGGAGCACTTGTTAACTTCGGGAAGTAGCACTAATCTGCATATTTTGCTGATGATGCTATCCGCTTGTTAAATTTGGGATTGAAGATACAGCTCTGAAATGATTACTTACTCTAGCTCTCTCTTTTTCCCGAAGAACTTCTGGTGTAGCATAGTTTTCGATAAATTATTTTTTCTTGTGCTTCTGTCATCTCAGCTGATAACTAACTCCAGGAAGTTGGTTAGCATAGCTAGTCCTGTGTGCCAGGAAACTAATGAAGCAGCAGATGCACAGTATTTTCGTTAACGATGGATCGCTACTGATTGTTGCTGGAAAAATTGCCAGCTTTGAAAAACTTGAATGATATGAGCCTCATGTTTCTGACAGATTTACTTATTAGTTTTGCTAGTATTCTTGTGCTTTGTTTTTTTGTATTGTCATTTTCGAGTTTGATTTCATGAAGTGAAAATATATATATGTTAACTGATCATGGTTAAGTAATAGTCATGTATCTATTGATTTGTTGTAAATATCTGATGCTGGTAAATATTACGACCTTTACAACATTAGGTGCAGATAGTTTAAATTCAAACTATCTATATCCATACACTTTTTGGTTACCAAAAACTTAATAATTACACCCAAAATTCTATACCTAACCTAAA</gDNA_template>
            <first_frame> *  I  Q  D  I  C  L  Q  H  F  T  *  F  R  L  Y  P  *  P  K  I  T  I  *  V  T  F  S  G  S  E  S  K  S  P  F  *  F  V  I  V  T  C  P  I  D  F  A  K  C  S  G  P  D  R  L  L  L  G  E  S  *  M  S  G  D  G  F  A  S  P  Y  K  Y  D  G  L  M  Q  C  C  L  W  G  S  G  L  V  H  R  P  S  R  T  F  L  V  R  F  S  Y  F  S  *  F  L  A  Q  C  L  G  C  H  K  L  Q  *  I  S  V  N  L  S  L  Y  Q  F  D  F  V  E  *  C  F  H  A  L  L  F  P  R  E  L  T  R  S  L  L  S  L  G  P  M  D  L  L  F  S  P  K  E  R  N  P  C  G  N  P  L  L  K  L  Q  K  S  L  I  Q  Q  E  L  V  T  L  L  Q  L  L  L  Q  W  P  *  W  R  V  N  L  K  R  N  V  *  D  L  L  :  L  Q  P  L  L  Y  V  F  K  *  K  E  P  F  Q  A  C  L  K  R  E  Q  C  S  I  F  F  S  Q  L  E  D  L  E  F  P  L  S  S  P  C  T  K  K  *  E  :  V  L  R  L  M  S  *  S  S  G  V  L  I  F  M  K  R :   T  A  V  E  H  L  L  T  S  G  S  S  T  N  L  H  I  L  L  M  M  L  S  A  C  *  I  W  D  *  R  Y  S  S  E  M  I  T  Y  S  S  S  L  F  F  P  K  N  F  W  C  S  I  V  F  D  K  L  F  F  L  V  L  L  S  S  Q  L  I  T  N  S  R  K  L  V  S  I  A  S  P  V  C  Q  E  T  N  E  A  A  D  A  Q  Y  F  R  *  R  W  I  A  T  D  C  C  W  K  N  C  Q  L  *  K  T  *  M  I  *  A  S  C  F  *  Q  I  Y  L  L  V  L  L  V  F  L  C  F  V  F  L  Y  C  H  F  R  V  *  F  H  E  V  K  I  Y  I  C  *  L  I  M  V  K  *  *  S  C  I  Y  *  F  V  V  N  I  *  C  W  *  I  L  R  P  L  Q  H  *  V  Q  I  V  *  I  Q  T  I  Y  I  H  T  L  F  G  Y  Q  K  L  N  N  Y  T  Q  N  S  I  P  N  L   </first_frame>
            <second_frame>  K  F  R  T  Y  A  C  S  I  S  L  D  L  D  C  I  R  D  P  K  *  L  S  E  L  H  F  R  V  L  S  L  K  V  P  F  D  L  L  *  L  P  A  L  L  I  L  Q  N  V  V  V  L  T  D  F  C  L  V  S  H  K  C  L  V  M  A  L  L  L  H  I  N  M  M  D  *  C  S  V  V  C  G  A  L  V  W  S  T  D  L  V  G  H  S  *  L  D  L  A  T  F  P  D  F  L  L  N  V  W  G  V  T  N  Y  N  R  Y  L  *  I  C  H  Y  I  N  L  I  L  W  N  D  V  S  T  L  F  C  F  P  G  S  *  P  G  P  C  *  A  W  G  Q  W  I  C  S  F  H  Q  R  R  G  T  L  A  A  T  H  Y  *  S  C  K  S  H  *  Y  N  R  S  W  *  H  F  Y  S  C  F  C  S  G  P  S  G  G  *  I  *  R  G  M  F  E  I  C  C :   C  S  R  F  S  M  C  S  S  E  R  S  H  S  K  H  A  *  K  E  S  S  V  Q  S  S  S  V  S  L  K  T  W  S  F  L  Y  H  L  L  V  Q  K  N  K  R :   F  S  G  *  *  V  E  V  P  E  S  *  F  S  *  R   : G  L  P  W  S  T  C  *  L  R  E  V  A  L  I  C  I  F  C  *  *  C  Y  P  L  V  K  F  G  I  E  D  T  A  L  K  *  L  L  T  L  A  L  S  F  S  R  R  T  S  G  V  A  *  F  S  I  N  Y  F  F  L  C  F  C  H  L  S  *  *  L  T  P  G  S  W  L  A  *  L  V  L  C  A  R  K  L  M  K  Q  Q  M  H  S  I  F  V  N  D  G  S  L  L  I  V  A  G  K  I  A  S  F  E  K  L  E  *  Y  E  P  H  V  S  D  R  F  T  Y  *  F  C  *  Y  S  C  A  L  F  F  C  I  V  I  F  E  F  D  F  M  K  *  K  Y  I  Y  V  N  *  S  W  L  S  N  S  H  V  S  I  D  L  L  *  I  S  D  A  G  K  Y  Y  D  L  Y  N  I  R  C  R  *  F  K  F  K  L  S  I  S  I  H  F  L  V  T  K  N  L  I  I  T  P  K  I  L  Y  L  T  *  </second_frame>
            <third_frame>   N  S  G  H  M  L  A  A  F  H  L  I  *  T  V  S  V  T  Q  N  N  Y  L  S  Y  I  F  G  F  *  V  *  K  S  L  L  I  C  Y  S  Y  L  P  Y  *  F  C  K  M  *  W  S  *  Q  T  F  A  W  *  V  I  N  V  W  *  W  L  C  F  S  I  *  I  *  W  I  N  A  V  L  F  V  G  L  W  F  G  P  P  T  *  *  D  I  P  S  *  I  *  L  L  F  L  I  S  C  S  M  F  G  V  S  Q  I  T  I  D  I  C  K  F  V  T  I  S  I  *  F  C  G  M  M  F  P  R  S  F  V  S  Q  G  V  N  Q  V  L  V  K  L  G  A  N  G  S  A  L  F  T  K  G  E  E  P  L  R  Q  P  I  I  K  A  A  K  V  I  D  T  T  G  A  G  D  T  F  T  A  A  F  A  V  A  L  V  E  G  K  S  K  E  E  C  L  R  F  A   : A  A  A  A  S  L  C  V  Q  V  K  G  A  I  P  S  M  P  E  K  R  A  V  F  N  L  L  Q  S  A  *  R  L  G  V  S  F  I  I  S  L  Y  K  K  I  R   : G  S  Q  V  D  E  L  K  F  R  S  L  D  F  H  E  E  :  D  C  R  G  A  L  V  N  F  G  K  *  H  *  S  A  Y  F  A  D  D  A  I  R  L  L  N  L  G  L  K  I  Q  L  *  N  D  Y  L  L  *  L  S  L  F  P  E  E  L  L  V  *  H  S  F  R  *  I  I  F  S  C  A  S  V  I  S  A  D  N  *  L  Q  E  V  G  *  H  S  *  S  C  V  P  G  N  *  *  S  S  R  C  T  V  F  S  L  T  M  D  R  Y  *  L  L  L  E  K  L  P  A  L  K  N  L  N  D  M  S  L  M  F  L  T  D  L  L  I  S  F  A  S  I  L  V  L  C  F  F  V  L  S  F  S  S  L  I  S  *  S  E  N  I  Y  M  L  T  D  H  G  *  V  I  V  M  Y  L  L  I  C  C  K  Y  L  M  L  V  N  I  T  T  F  T  T  L  G  A  D  S  L  N  S  N  Y  L  Y  P  Y  T  F  W  L  P  K  T  *  *  L  H  P  K  F  Y  T  *  P  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0102J11.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55182" stop="54948"/>
                    <exon start="54704" stop="54613"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCGMMFPRSFVSQGVNQVLVKLGANGSALFTKGEEPLRQPIIKAAKVIDTTGAGDTFTAAFAVALVEGKSKEECLRFAAAAASLCVQVKGAIPSMPEKRAVFNLLQSA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0102J11.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53722" stop="53522"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RYSSEMITYSSSLFFPKNFWCSIVFDKLFFLVLLSSQLITNSRKLVSIASPVCQETNEAADAQYFR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="57554" PGL_stop="57171"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57554" e_stop="57171"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="57554" e_stop="57171" e_length="384"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57554" stop="57171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344200" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGGGAAACAATTTCAGCTAAAACAGGTCAAACATTGGCTGGTGGAAAGGGGGCTAATCAAGCTGTTTGTGGTGGAAAGCTTGATTATCCAACTTTTTTTATTGGTCAAGTTGGTGAAGATGCTCATGGGAGATTGATTACTGAAGCTTTAGAGAGTGGTGGGGTTTGTGTGGATCACCTTACTACTGTTGCTAATGCTCCAACTGGAAATGCTGTGGTGATGCTTCAGTCTGATGGGGAGAATTCAATTATTATTGTTGGTGGTGCAAACATGTCTTGCTGGCCTGAAGAATTGTCATATGAGGATTTGGAGATTGTGAGAAGTGCAGGGATTGTGTTGCTCCAAAGGGAAATTCCAGATTTTGTTAACATCCAAGTTGCAAA</gDNA_template>
            <first_frame> R  G  N  N  F  S  *  N  R  S  N  I  G  W  W  K  G  G  *  S  S  C  L  W  W  K  A  *  L  S  N  F  F  Y  W  S  S  W  *  R  C  S  W  E  I  D  Y  *  S  F  R  E  W  W  G  L  C  G  S  P  Y  Y  C  C  *  C  S  N  W  K  C  C  G  D  A  S  V  *  W  G  E  F  N  Y  Y  C  W  W  C  K  H  V  L  L  A  *  R  I  V  I  *  G  F  G  D  C  E  K  C  R  D  C  V  A  P  K  G  N  S  R  F  C  *  H  P  S  C  K </first_frame>
            <second_frame>  G  E  T  I  S  A  K  T  G  Q  T  L  A  G  G  K  G  A  N  Q  A  V  C  G  G  K  L  D  Y  P  T  F  F  I  G  Q  V  G  E  D  A  H  G  R  L  I  T  E  A  L  E  S  G  G  V  C  V  D  H  L  T  T  V  A  N  A  P  T  G  N  A  V  V  M  L  Q  S  D  G  E  N  S  I  I  I  V  G  G  A  N  M  S  C  W  P  E  E  L  S  Y  E  D  L  E  I  V  R  S  A  G  I  V  L  L  Q  R  E  I  P  D  F  V  N  I  Q  V  A   </second_frame>
            <third_frame>   G  K  Q  F  Q  L  K  Q  V  K  H  W  L  V  E  R  G  L  I  K  L  F  V  V  E  S  L  I  I  Q  L  F  L  L  V  K  L  V  K  M  L  M  G  D  *  L  L  K  L  *  R  V  V  G  F  V  W  I  T  L  L  L  L  L  M  L  Q  L  E  M  L  W  *  C  F  S  L  M  G  R  I  Q  L  L  L  L  V  V  Q  T  C  L  A  G  L  K  N  C  H  M  R  I  W  R  L  *  E  V  Q  G  L  C  C  S  K  G  K  F  Q  I  L  L  T  S  K  L  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0102J11.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57553" stop="57173"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GETISAKTGQTLAGGKGANQAVCGGKLDYPTFFIGQVGEDAHGRLITEALESGGVCVDHLTTVANAPTGNAVVMLQSDGENSIIIVGGANMSCWPEELSYEDLEIVRSAGIVLLQREIPDFVNIQVA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="71482" PGL_stop="71941"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71482" e_stop="71590"/>
            <exon e_start="71749" e_stop="71826"/>
            <exon e_start="71905" e_stop="71941"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.126" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.459" e_score="0.987"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71482" e_stop="71590" e_length="109"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.126">
            <gDNA_intron_boundary i_start="71591" i_stop="71748" i_length="158"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="71749" e_stop="71826" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.459">
            <gDNA_intron_boundary i_start="71827" i_stop="71904" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="0.973">
            <gDNA_exon_boundary e_start="71905" e_stop="71941" e_length="37"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71482" stop="71590"/>
              <exon start="71749" stop="71826"/>
              <exon start="71905" stop="71941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345782" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCAAGGAGCTGGCCCCACCCTGACGCTGGTAACTTGGTCGTCACTTATGTTGGAAGTGACTACACCATTCACCACAGGCTTATATCCCTCGAGTCCATTTACAG : TTCTGGGGTCAAGGGAACGACGATAAGGCCAATTCAAGACATGCTGCTTGAACAGCCTGAGCTCAGGCGACTCGGAAG : GATTGTGAGAAGCTTGTAGGTCACTCAAGATTTATAC</gDNA_template>
            <first_frame> L  H  Q  G  A  G  P  T  L  T  L  V  T  W  S  S  L  M  L  E  V  T  T  P  F  T  T  G  L  Y  P  S  S  P  F  T   : V  L  G  S  R  E  R  R  *  G  Q  F  K  T  C  C  L  N  S  L  S  S  G  D  S  E   : G  L  *  E  A  C  R  S  L  K  I  Y   </first_frame>
            <second_frame>  Y  I  K  E  L  A  P  P  *  R  W  *  L  G  R  H  L  C  W  K  *  L  H  H  S  P  Q  A  Y  I  P  R  V  H  L  Q  :  F  W  G  Q  G  N  D  D  K  A  N  S  R  H  A  A  *  T  A  *  A  Q  A  T  R  K  :  D  C  E  K  L  V  G  H  S  R  F  I  </second_frame>
            <third_frame>   T  S  R  S  W  P  H  P  D  A  G  N  L  V  V  T  Y  V  G  S  D  Y  T  I  H  H  R  L  I  S  L  E  S  I  Y  S :   S  G  V  K  G  T  T  I  R  P  I  Q  D  M  L  L  E  Q  P  E  L  R  R  L  G  R :   I  V  R  S  L  *  V  T  Q  D  L  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0102J11.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71484" stop="71590"/>
                    <exon start="71749" stop="71826"/>
                    <exon start="71905" stop="71923"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSRSWPHPDAGNLVVTYVGSDYTIHHRLISLESIYSSGVKGTTIRPIQDMLLEQPELRRLGRIVRSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="73477" PGL_stop="75796"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73477" e_stop="73574"/>
            <exon e_start="73923" e_stop="73973"/>
            <exon e_start="74276" e_stop="74318"/>
            <exon e_start="74396" e_stop="74537"/>
            <exon e_start="74617" e_stop="74955"/>
            <exon e_start="75225" e_stop="75479"/>
            <exon e_start="75556" e_stop="75796"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.992" e_score="0.980"/>
          <exon-intron don_prob="0.000" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.262" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.970" e_score="0.994"/>
          <exon-intron don_prob="0.896" acc_prob="0.995" e_score="0.988"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="73477" e_stop="73574" e_length="98"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.992">
            <gDNA_intron_boundary i_start="73575" i_stop="73922" i_length="348"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="73923" e_stop="73973" e_length="51"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.954">
            <gDNA_intron_boundary i_start="73974" i_stop="74275" i_length="302"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="74276" e_stop="74318" e_length="43"/>
          </exon>
          <intron i_serial="3" don_prob="0.948" acc_prob="0.262">
            <gDNA_intron_boundary i_start="74319" i_stop="74395" i_length="77"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="74396" e_stop="74537" e_length="142"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="74538" i_stop="74616" i_length="79"/>
          </intron>
          <exon e_serial="5" e_score="0.994">
            <gDNA_exon_boundary e_start="74617" e_stop="74955" e_length="339"/>
          </exon>
          <intron i_serial="5" don_prob="0.974" acc_prob="0.970">
            <gDNA_intron_boundary i_start="74956" i_stop="75224" i_length="269"/>
          </intron>
          <exon e_serial="6" e_score="0.988">
            <gDNA_exon_boundary e_start="75225" e_stop="75479" e_length="255"/>
          </exon>
          <intron i_serial="6" don_prob="0.896" acc_prob="0.995">
            <gDNA_intron_boundary i_start="75480" i_stop="75555" i_length="76"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="75556" e_stop="75796" e_length="241"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73477" stop="73574"/>
              <exon start="73923" stop="73973"/>
              <exon start="74276" stop="74318"/>
              <exon start="74396" stop="74537"/>
              <exon start="74617" stop="74955"/>
              <exon start="75225" stop="75479"/>
              <exon start="75556" stop="75796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330688" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATTTTTTCTTTGGTTTTTTTAAAAAAAATATTTGCTGGGGTACCTTCTTGATGTCTGCTTCAAGAAAATGAGCACTTTCTGCAATAAAGTTTCAAG : GAAGATATTGTTCTGTTGGGAATATCAGTAGCTTTGGTTGTTGAATCTCGT : TTAAAGCTGAGAGGCCAAAAGTCTAAAGTTATTGAGTATTCAG : AACTAAATGGGAAATTCTAAAAATATTGCTCTCTATGTAACAATATGTGTGATTTCTTTTATCATCTCGAAGATTATTATGACAATCGTCTGTTACCGTAGATGGAAGAGAAAGCAAATGGTTGTTCAAGACAGCTTATCTG : GTGGAAAACTAGTGATGTTTAAGTCACCGAAAATGAACACGTTGAAGTCCAACATGTTCTTGAAGAGGACCATGAAGCTGACTAACAAAGATATTATAGGATCAGGAGGCTATGGAACAGTCTATAAACTGACAATTAACGAATCAATTTCTTTCGCGGTAAAGAGGTTAAACAGAATAAGTGCAGAACAAGACAGAGGTTTTGAAAGAGAGTTGGAGGCAATGGGGGACATAAAGCATCGAAATATAGTGACACTTCATGGATACTACAGTACAACGCAGTATAATCTTCTGATATATGAGCTTATGACTAATGGAAGTTTAGATGAAGCACTTCATG : GAAAATCGGCTGCCAGGAAGGTTTTGGATTGGCCTACAAGATACAAAATAGCAGTAGGAGCAGCAAGAGGATTATCATATCTACATCACGATTGCATCCCTCACATCATCCACAGAGATATAAAGTCAAGCAATATCTTGTTGGGTCATAACATGGAGGCTCGAGTATCTGATTTTGGACTAGCCACTCTGATGGAGCCAGATAAGACGCACGTTTCAACTTTGGTAGCTGGAACTTTTGGATATTTGGCTCCTG : AATATTTTGACACCGGAAAAGCAACAGTCAAAGGAGATGTTTACAGCTTTGGAGTTGTCTTACTGGAACTTCTAACTGGGAAAAAGCCATCAGATGAAGCATTTTTGGAGGAAGGAACCAGACTTGTAACTTGGGTAAGCTTGTAGTTCACCTTTTTTCTTTTTTATCCTAGCTGCTTTCGAGCTGTCATTAATTCGGTCAGTTGATACTGTTCTGCTTTACAGGTGAAGACAGTTGTTCA</gDNA_template>
            <first_frame> *  F  F  L  W  F  F  *  K  K  Y  L  L  G  Y  L  L  D  V  C  F  K  K  M  S  T  F  C  N  K  V  S  R :   K  I  L  F  C  W  E  Y  Q  *  L  W  L  L  N  L  V :   *  S  *  E  A  K  S  L  K  L  L  S  I  Q  :  N  *  M  G  N  S  K  N  I  A  L  Y  V  T  I  C  V  I  S  F  I  I  S  K  I  I  M  T  I  V  C  Y  R  R  W  K  R  K  Q  M  V  V  Q  D  S  L  S   : G  G  K  L  V  M  F  K  S  P  K  M  N  T  L  K  S  N  M  F  L  K  R  T  M  K  L  T  N  K  D  I  I  G  S  G  G  Y  G  T  V  Y  K  L  T  I  N  E  S  I  S  F  A  V  K  R  L  N  R  I  S  A  E  Q  D  R  G  F  E  R  E  L  E  A  M  G  D  I  K  H  R  N  I  V  T  L  H  G  Y  Y  S  T  T  Q  Y  N  L  L  I  Y  E  L  M  T  N  G  S  L  D  E  A  L  H   : G  K  S  A  A  R  K  V  L  D  W  P  T  R  Y  K  I  A  V  G  A  A  R  G  L  S  Y  L  H  H  D  C  I  P  H  I  I  H  R  D  I  K  S  S  N  I  L  L  G  H  N  M  E  A  R  V  S  D  F  G  L  A  T  L  M  E  P  D  K  T  H  V  S  T  L  V  A  G  T  F  G  Y  L  A  P   : E  Y  F  D  T  G  K  A  T  V  K  G  D  V  Y  S  F  G  V  V  L  L  E  L  L  T  G  K  K  P  S  D  E  A  F  L  E  E  G  T  R  L  V  T  W  V  S  L  *  F  T  F  F  L  F  Y  P  S  C  F  R  A  V  I  N  S  V  S  *  Y  C  S  A  L  Q  V  K  T  V  V   </first_frame>
            <second_frame>  D  F  F  F  G  F  F  K  K  N  I  C  W  G  T  F  L  M  S  A  S  R  K  *  A  L  S  A  I  K  F  Q   : G  R  Y  C  S  V  G  N  I  S  S  F  G  C  *  I  S   : F  K  A  E  R  P  K  V  *  S  Y  *  V  F  R :   T  K  W  E  I  L  K  I  L  L  S  M  *  Q  Y  V  *  F  L  L  S  S  R  R  L  L  *  Q  S  S  V  T  V  D  G  R  E  S  K  W  L  F  K  T  A  Y  L  :  V  E  N  *  *  C  L  S  H  R  K  *  T  R  *  S  P  T  C  S  *  R  G  P  *  S  *  L  T  K  I  L  *  D  Q  E  A  M  E  Q  S  I  N  *  Q  L  T  N  Q  F  L  S  R  *  R  G  *  T  E  *  V  Q  N  K  T  E  V  L  K  E  S  W  R  Q  W  G  T  *  S  I  E  I  *  *  H  F  M  D  T  T  V  Q  R  S  I  I  F  *  Y  M  S  L  *  L  M  E  V  *  M  K  H  F  M  :  E  N  R  L  P  G  R  F  W  I  G  L  Q  D  T  K  *  Q  *  E  Q  Q  E  D  Y  H  I  Y  I  T  I  A  S  L  T  S  S  T  E  I  *  S  Q  A  I  S  C  W  V  I  T  W  R  L  E  Y  L  I  L  D  *  P  L  *  W  S  Q  I  R  R  T  F  Q  L  W  *  L  E  L  L  D  I  W  L  L  :  N  I  L  T  P  E  K  Q  Q  S  K  E  M  F  T  A  L  E  L  S  Y  W  N  F  *  L  G  K  S  H  Q  M  K  H  F  W  R  K  E  P  D  L  *  L  G  *  A  C  S  S  P  F  F  F  F  I  L  A  A  F  E  L  S  L  I  R  S  V  D  T  V  L  L  Y  R  *  R  Q  L  F  </second_frame>
            <third_frame>   I  F  S  L  V  F  L  K  K  I  F  A  G  V  P  S  *  C  L  L  Q  E  N  E  H  F  L  Q  *  S  F  K  :  E  D  I  V  L  L  G  I  S  V  A  L  V  V  E  S  R  :  L  K  L  R  G  Q  K  S  K  V  I  E  Y  S   : E  L  N  G  K  F  *  K  Y  C  S  L  C  N  N  M  C  D  F  F  Y  H  L  E  D  Y  Y  D  N  R  L  L  P  *  M  E  E  K  A  N  G  C  S  R  Q  L  I  W :   W  K  T  S  D  V  *  V  T  E  N  E  H  V  E  V  Q  H  V  L  E  E  D  H  E  A  D  *  Q  R  Y  Y  R  I  R  R  L  W  N  S  L  *  T  D  N  *  R  I  N  F  F  R  G  K  E  V  K  Q  N  K  C  R  T  R  Q  R  F  *  K  R  V  G  G  N  G  G  H  K  A  S  K  Y  S  D  T  S  W  I  L  Q  Y  N  A  V  *  S  S  D  I  *  A  Y  D  *  W  K  F  R  *  S  T  S  W :   K  I  G  C  Q  E  G  F  G  L  A  Y  K  I  Q  N  S  S  R  S  S  K  R  I  I  I  S  T  S  R  L  H  P  S  H  H  P  Q  R  Y  K  V  K  Q  Y  L  V  G  S  *  H  G  G  S  S  I  *  F  W  T  S  H  S  D  G  A  R  *  D  A  R  F  N  F  G  S  W  N  F  W  I  F  G  S  * :   I  F  *  H  R  K  S  N  S  Q  R  R  C  L  Q  L  W  S  C  L  T  G  T  S  N  W  E  K  A  I  R  *  S  I  F  G  G  R  N  Q  T  C  N  L  G  K  L  V  V  H  L  F  S  F  L  S  *  L  L  S  S  C  H  *  F  G  Q  L  I  L  F  C  F  T  G  E  D  S  C  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0102J11.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74402" stop="74537"/>
                    <exon start="74617" stop="74955"/>
                    <exon start="75225" stop="75479"/>
                    <exon start="75556" stop="75701"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>873</number_coding_nucleotides>
                  <number_encoded_amino_acids>291</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGNSKNIALYVTICVISFIISKIIMTIVCYRRWKRKQMVVQDSLSGGKLVMFKSPKMNTLKSNMFLKRTMKLTNKDIIGSGGYGTVYKLTINESISFAVKRLNRISAEQDRGFERELEAMGDIKHRNIVTLHGYYSTTQYNLLIYELMTNGSLDEALHGKSAARKVLDWPTRYKIAVGAARGLSYLHHDCIPHIIHRDIKSSNILLGHNMEARVSDFGLATLMEPDKTHVSTLVAGTFGYLAPEYFDTGKATVKGDVYSFGVVLLELLTGKKPSDEAFLEEGTRLVTWVSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="78743" PGL_stop="76280"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78743" e_stop="78566"/>
            <exon e_start="77140" e_stop="77039"/>
            <exon e_start="76904" e_stop="76749"/>
            <exon e_start="76657" e_stop="76443"/>
            <exon e_start="76308" e_stop="76280"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.461" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.806" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.877" e_score="1.000"/>
          <exon-intron don_prob="0.920" acc_prob="0.921" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78743" e_stop="78566" e_length="178"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.461">
            <gDNA_intron_boundary i_start="78565" i_stop="77141" i_length="1425"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="77140" e_stop="77039" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.967" acc_prob="0.806">
            <gDNA_intron_boundary i_start="77038" i_stop="76905" i_length="134"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76904" e_stop="76749" e_length="156"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.877">
            <gDNA_intron_boundary i_start="76748" i_stop="76658" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="76657" e_stop="76443" e_length="215"/>
          </exon>
          <intron i_serial="4" don_prob="0.920" acc_prob="0.921">
            <gDNA_intron_boundary i_start="76442" i_stop="76309" i_length="134"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="76308" e_stop="76280" e_length="29"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78743" stop="78566"/>
              <exon start="77140" stop="77039"/>
              <exon start="76904" stop="76749"/>
              <exon start="76657" stop="76443"/>
              <exon start="76308" stop="76280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327913" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCATTTCAGTATGGATTTCAACATCCACACCCACAAAGATCACTGCTTTTAACTCCATACCCAGAATTTGTTATCCTCTTAAACTTTCAAGAAATGGTATTTATCCCTTATCTACATTTGAGAGAAATGGCCAATACGAACAAAATCTCACAATCAAAGCTGCTGCCTCCTCTTCTG : TTGGAAGTGCAGAATACACAGAAGAACCAGCTACTAAGGTGAAATTTCAAAGATCATTGAGCTTACCTGGTTGCTCTACTTCCTTGTCATTGCTTGGAACTG : GATACAGGGAAAAGATTTTTGCAATTATTGGTGTCAAGGTCTATGCTGCAGGCCTCTATGTCAATGACTCCGTCTTTAGTAGCTTAGATGCCTGGCGAGGACGTTCTGCTGCAGATATTCAACAGGATCCTTCCTTGTTCAACAAGATCTTTGAAG : CGGATTTGGAGAAATCTTTACTTATTGTGCTGGTCAGAGATGTTGATGGTAAAACTTTCTGGGATGCCTTAGATGAAGCCATCTCTCCGAGAATCAAATCCCCTACTGCCGATGATAAGTCTGCTCTTTCTACATTCCGCGGTGTCTTTCAAGGGAAACCTCTTAAGAAAGAAACTTCCATATTCTTGACTTGGATTGACCCAAATAAAATGCTT : GTTTCACTCTCTTTTGATGGAATGCCTTC</gDNA_template>
            <first_frame> A  I  S  V  W  I  S  T  S  T  P  T  K  I  T  A  F  N  S  I  P  R  I  C  Y  P  L  K  L  S  R  N  G  I  Y  P  L  S  T  F  E  R  N  G  Q  Y  E  Q  N  L  T  I  K  A  A  A  S  S  S   : V  G  S  A  E  Y  T  E  E  P  A  T  K  V  K  F  Q  R  S  L  S  L  P  G  C  S  T  S  L  S  L  L  G  T   : G  Y  R  E  K  I  F  A  I  I  G  V  K  V  Y  A  A  G  L  Y  V  N  D  S  V  F  S  S  L  D  A  W  R  G  R  S  A  A  D  I  Q  Q  D  P  S  L  F  N  K  I  F  E   : A  D  L  E  K  S  L  L  I  V  L  V  R  D  V  D  G  K  T  F  W  D  A  L  D  E  A  I  S  P  R  I  K  S  P  T  A  D  D  K  S  A  L  S  T  F  R  G  V  F  Q  G  K  P  L  K  K  E  T  S  I  F  L  T  W  I  D  P  N  K  M  L  :  V  S  L  S  F  D  G  M  P   </first_frame>
            <second_frame>  P  F  Q  Y  G  F  Q  H  P  H  P  Q  R  S  L  L  L  T  P  Y  P  E  F  V  I  L  L  N  F  Q  E  M  V  F  I  P  Y  L  H  L  R  E  M  A  N  T  N  K  I  S  Q  S  K  L  L  P  P  L  L  :  L  E  V  Q  N  T  Q  K  N  Q  L  L  R  *  N  F  K  D  H  *  A  Y  L  V  A  L  L  P  C  H  C  L  E  L  :  D  T  G  K  R  F  L  Q  L  L  V  S  R  S  M  L  Q  A  S  M  S  M  T  P  S  L  V  A  *  M  P  G  E  D  V  L  L  Q  I  F  N  R  I  L  P  C  S  T  R  S  L  K  :  R  I  W  R  N  L  Y  L  L  C  W  S  E  M  L  M  V  K  L  S  G  M  P  *  M  K  P  S  L  R  E  S  N  P  L  L  P  M  I  S  L  L  F  L  H  S  A  V  S  F  K  G  N  L  L  R  K  K  L  P  Y  S  *  L  G  L  T  Q  I  K  C  L :   F  H  S  L  L  M  E  C  L  </second_frame>
            <third_frame>   H  F  S  M  D  F  N  I  H  T  H  K  D  H  C  F  *  L  H  T  Q  N  L  L  S  S  *  T  F  K  K  W  Y  L  S  L  I  Y  I  *  E  K  W  P  I  R  T  K  S  H  N  Q  S  C  C  L  L  F  C :   W  K  C  R  I  H  R  R  T  S  Y  *  G  E  I  S  K  I  I  E  L  T  W  L  L  Y  F  L  V  I  A  W  N  W :   I  Q  G  K  D  F  C  N  Y  W  C  Q  G  L  C  C  R  P  L  C  Q  *  L  R  L  *  *  L  R  C  L  A  R  T  F  C  C  R  Y  S  T  G  S  F  L  V  Q  Q  D  L  *  S :   G  F  G  E  I  F  T  Y  C  A  G  Q  R  C  *  W  *  N  F  L  G  C  L  R  *  S  H  L  S  E  N  Q  I  P  Y  C  R  *  *  V  C  S  F  Y  I  P  R  C  L  S  R  E  T  S  *  E  R  N  F  H  I  L  D  L  D  *  P  K  *  N  A   : C  F  T  L  F  *  W  N  A  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0102J11.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78743" stop="78566"/>
                    <exon start="77140" stop="77039"/>
                    <exon start="76904" stop="76749"/>
                    <exon start="76657" stop="76443"/>
                    <exon start="76308" stop="76282"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>678</number_coding_nucleotides>
                  <number_encoded_amino_acids>226</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AISVWISTSTPTKITAFNSIPRICYPLKLSRNGIYPLSTFERNGQYEQNLTIKAAASSSVGSAEYTEEPATKVKFQRSLSLPGCSTSLSLLGTGYREKIFAIIGVKVYAAGLYVNDSVFSSLDAWRGRSAADIQQDPSLFNKIFEADLEKSLLIVLVRDVDGKTFWDALDEAISPRIKSPTADDKSALSTFRGVFQGKPLKKETSIFLTWIDPNKMLVSLSFDGMP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="91737" PGL_stop="96325"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91737" e_stop="92181"/>
            <exon e_start="92284" e_stop="92393"/>
            <exon e_start="93537" e_stop="93664"/>
            <exon e_start="93753" e_stop="93856"/>
            <exon e_start="95178" e_stop="95305"/>
            <exon e_start="95405" e_stop="96325"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.935" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.946" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.882" acc_prob="0.761" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.892" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="91737" e_stop="92181" e_length="445"/>
          </exon>
          <intron i_serial="1" don_prob="0.935" acc_prob="1.000">
            <gDNA_intron_boundary i_start="92182" i_stop="92283" i_length="102"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="92284" e_stop="92393" e_length="110"/>
          </exon>
          <intron i_serial="2" don_prob="0.946" acc_prob="0.995">
            <gDNA_intron_boundary i_start="92394" i_stop="93536" i_length="1143"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="93537" e_stop="93664" e_length="128"/>
          </exon>
          <intron i_serial="3" don_prob="0.882" acc_prob="0.761">
            <gDNA_intron_boundary i_start="93665" i_stop="93752" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="93753" e_stop="93856" e_length="104"/>
          </exon>
          <intron i_serial="4" don_prob="0.972" acc_prob="0.892">
            <gDNA_intron_boundary i_start="93857" i_stop="95177" i_length="1321"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="95178" e_stop="95305" e_length="128"/>
          </exon>
          <intron i_serial="5" don_prob="0.974" acc_prob="0.999">
            <gDNA_intron_boundary i_start="95306" i_stop="95404" i_length="99"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="95405" e_stop="96325" e_length="921"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91737" stop="92181"/>
              <exon start="92284" stop="92393"/>
              <exon start="93537" stop="93664"/>
              <exon start="93753" stop="93856"/>
              <exon start="95178" stop="95305"/>
              <exon start="95405" stop="96325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316241" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTTTAGGAGTTGAAACACAGCCCAACTGTCTTTTTCTTCCATTTTCTGTCACTTAATCAGACCAAAGACTCCATTTTTTATGTGGTTCTTTTTTATCCACTCAATTATTTCTTCTTGGGACAGGATATAAAAGCACACCCAAGTGTTCAAATTGTTTCCATAGTAGTTTTCTGTTCTTTTTTGCCTATTGGGGTGTCGAAAAAAGCAATCTTGAAGCATTGCAAGGCAAAAAATTTGGTGATTTAGCTAAGTGGGTGTTACAAAGATGATGTCTGTGACTTGCCATAATCTTGAAATTGGGAGAACCCCATTGGAGTCTTTGGCTTGTGGCTGTTCTTTTTCAAAGGGTGTTTTGAGAAATGTAAGTAGAAGATTCAGTGGGAAGAAGTTGTTGTCTTGCAGACAAGAATTTGGGCGTATTTCAACTAAGGCTTCACTTACTG : GGTTGGCACCAGTTTTGGATTTGAATAAGTCAGAAAAACCTATTTCATTGACTAATGTTTTTGAAGTGGTTGCGGATGACCTACTTACGTTAAACAAGAACTTGCATAAT : ATTGTTGGTGCAGAGAACCCAGTTTTAATGTCTGCAGCTGAGCAGATTTTTGGTGCTGGTGGCAAAAGGGTGAGACCTGCTTTAGTGTTCCTAGTGTCAAGGGCCACAGCAGAAATGTCTGGCTTAAA : GGAACTCACCACAAATCACAGAAGGTTAGCTGAAATCATTGAAATGATCCATACTGCAAGCTTGATACATGATGACGTGTTAGATGAAAGTGACACACGAAGAG : GAAAGGAGACTATTCACCAATTATATGGTACTAGAGTGGCAGTACTGGCTGGTGATTTTATGTTTGCACAGTCGTCCTGGTACCTAGCTAACCTTGAAAACCTTGAAGTCATAAAGCTCATCAGTCAG : GTTATTAAAGACTTTGCAAGTGGTGAAATAAAGCAGGCCTCTAACTTGTTCGACTGTGATGTTGGACTGGATGAATATTTGCTCAAGAGTTACTATAAAACGGCCTCCTTGATTGCTGCAAGCACCAAAGGAGCTGCCATTTTCAGTGAAGTTGGCAGTGATATTAGTGAACAAATGTTTCAATATGGGAGGAATCTTGGTTTATCGTTCCAGATTGTTGATGACATATTGGACTTCACACAATCAGCCGCACAACTGGGAAAGCCAGCTGGAAGTGACTTAGCCAAGGGAAACCTTACTGCACCAGTACTTTTTGCATTAGAGAAAGAGCCAAACCTTAGGAATATAATCGAATCAGAATTTCACGATGCTGGTTCTCTCGAGGAGGCCATCAATCTGGTGAAAAGCTGTGGGGGAATTCAACGAGCACAAGATTTGGCAAAGGAGAAAGCTGATTTAGCAATGCAGAACCTAAAATGCCTTCCATCTAGTCCTTTTCAAGCAGCACTTGAGGAAATCGTGAAGTATAATCTGGAGAGAATTGAATAGACGAAAACAAAGGACGAAACTATACAACTTTGGTTTATTATTCTCTGAAAGCTCTTCATATCTAACAATATCTGGAGCACAGAGTAGAAGCTATTACTATAGTTTGAATGGCAACAACGATCAGAACGAAAGTGCTTCACTATGTTCATATATTATACCCATACAGGTTGTAATTTTCAGTTCCTAATACAGCAATATGGTGTTCCAGCATTCTTTATAATTTGGCTAATAAATTGTCAAATTTCAACTGTTGTTGTACACTAAAGAAATTTCACATTACAAATAATGTCATGTATTAGTATTTACTATTGGCTTTCTTGGATGAACATATATGTTATAAATTGATAATACAATAAACATATTACACCTTAA</gDNA_template>
            <first_frame> N  F  R  S  *  N  T  A  Q  L  S  F  S  S  I  F  C  H  L  I  R  P  K  T  P  F  F  M  W  F  F  F  I  H  S  I  I  S  S  W  D  R  I  *  K  H  T  Q  V  F  K  L  F  P  *  *  F  S  V  L  F  C  L  L  G  C  R  K  K  Q  S  *  S  I  A  R  Q  K  I  W  *  F  S  *  V  G  V  T  K  M  M  S  V  T  C  H  N  L  E  I  G  R  T  P  L  E  S  L  A  C  G  C  S  F  S  K  G  V  L  R  N  V  S  R  R  F  S  G  K  K  L  L  S  C  R  Q  E  F  G  R  I  S  T  K  A  S  L  T   : G  L  A  P  V  L  D  L  N  K  S  E  K  P  I  S  L  T  N  V  F  E  V  V  A  D  D  L  L  T  L  N  K  N  L  H  N  :  I  V  G  A  E  N  P  V  L  M  S  A  A  E  Q  I  F  G  A  G  G  K  R  V  R  P  A  L  V  F  L  V  S  R  A  T  A  E  M  S  G  L  K :   E  L  T  T  N  H  R  R  L  A  E  I  I  E  M  I  H  T  A  S  L  I  H  D  D  V  L  D  E  S  D  T  R  R   : G  K  E  T  I  H  Q  L  Y  G  T  R  V  A  V  L  A  G  D  F  M  F  A  Q  S  S  W  Y  L  A  N  L  E  N  L  E  V  I  K  L  I  S  Q  :  V  I  K  D  F  A  S  G  E  I  K  Q  A  S  N  L  F  D  C  D  V  G  L  D  E  Y  L  L  K  S  Y  Y  K  T  A  S  L  I  A  A  S  T  K  G  A  A  I  F  S  E  V  G  S  D  I  S  E  Q  M  F  Q  Y  G  R  N  L  G  L  S  F  Q  I  V  D  D  I  L  D  F  T  Q  S  A  A  Q  L  G  K  P  A  G  S  D  L  A  K  G  N  L  T  A  P  V  L  F  A  L  E  K  E  P  N  L  R  N  I  I  E  S  E  F  H  D  A  G  S  L  E  E  A  I  N  L  V  K  S  C  G  G  I  Q  R  A  Q  D  L  A  K  E  K  A  D  L  A  M  Q  N  L  K  C  L  P  S  S  P  F  Q  A  A  L  E  E  I  V  K  Y  N  L  E  R  I  E  *  T  K  T  K  D  E  T  I  Q  L  W  F  I  I  L  *  K  L  F  I  S  N  N  I  W  S  T  E  *  K  L  L  L  *  F  E  W  Q  Q  R  S  E  R  K  C  F  T  M  F  I  Y  Y  T  H  T  G  C  N  F  Q  F  L  I  Q  Q  Y  G  V  P  A  F  F  I  I  W  L  I  N  C  Q  I  S  T  V  V  V  H  *  R  N  F  T  L  Q  I  M  S  C  I  S  I  Y  Y  W  L  S  W  M  N  I  Y  V  I  N  *  *  Y  N  K  H  I  T  P  * </first_frame>
            <second_frame>  I  L  G  V  E  T  Q  P  N  C  L  F  L  P  F  S  V  T  *  S  D  Q  R  L  H  F  L  C  G  S  F  L  S  T  Q  L  F  L  L  G  T  G  Y  K  S  T  P  K  C  S  N  C  F  H  S  S  F  L  F  F  F  A  Y  W  G  V  E  K  S  N  L  E  A  L  Q  G  K  K  F  G  D  L  A  K  W  V  L  Q  R  *  C  L  *  L  A  I  I  L  K  L  G  E  P  H  W  S  L  W  L  V  A  V  L  F  Q  R  V  F  *  E  M  *  V  E  D  S  V  G  R  S  C  C  L  A  D  K  N  L  G  V  F  Q  L  R  L  H  L  L  :  G  W  H  Q  F  W  I  *  I  S  Q  K  N  L  F  H  *  L  M  F  L  K  W  L  R  M  T  Y  L  R  *  T  R  T  C  I  I :   L  L  V  Q  R  T  Q  F  *  C  L  Q  L  S  R  F  L  V  L  V  A  K  G  *  D  L  L  *  C  S  *  C  Q  G  P  Q  Q  K  C  L  A  *   : R  N  S  P  Q  I  T  E  G  *  L  K  S  L  K  *  S  I  L  Q  A  *  Y  M  M  T  C  *  M  K  V  T  H  E  E  :  E  R  R  L  F  T  N  Y  M  V  L  E  W  Q  Y  W  L  V  I  L  C  L  H  S  R  P  G  T  *  L  T  L  K  T  L  K  S  *  S  S  S  V  R :   L  L  K  T  L  Q  V  V  K  *  S  R  P  L  T  C  S  T  V  M  L  D  W  M  N  I  C  S  R  V  T  I  K  R  P  P  *  L  L  Q  A  P  K  E  L  P  F  S  V  K  L  A  V  I  L  V  N  K  C  F  N  M  G  G  I  L  V  Y  R  S  R  L  L  M  T  Y  W  T  S  H  N  Q  P  H  N  W  E  S  Q  L  E  V  T  *  P  R  E  T  L  L  H  Q  Y  F  L  H  *  R  K  S  Q  T  L  G  I  *  S  N  Q  N  F  T  M  L  V  L  S  R  R  P  S  I  W  *  K  A  V  G  E  F  N  E  H  K  I  W  Q  R  R  K  L  I  *  Q  C  R  T  *  N  A  F  H  L  V  L  F  K  Q  H  L  R  K  S  *  S  I  I  W  R  E  L  N  R  R  K  Q  R  T  K  L  Y  N  F  G  L  L  F  S  E  S  S  S  Y  L  T  I  S  G  A  Q  S  R  S  Y  Y  Y  S  L  N  G  N  N  D  Q  N  E  S  A  S  L  C  S  Y  I  I  P  I  Q  V  V  I  F  S  S  *  Y  S  N  M  V  F  Q  H  S  L  *  F  G  *  *  I  V  K  F  Q  L  L  L  Y  T  K  E  I  S  H  Y  K  *  C  H  V  L  V  F  T  I  G  F  L  G  *  T  Y  M  L  *  I  D  N  T  I  N  I  L  H  L   </second_frame>
            <third_frame>   F  *  E  L  K  H  S  P  T  V  F  F  F  H  F  L  S  L  N  Q  T  K  D  S  I  F  Y  V  V  L  F  Y  P  L  N  Y  F  F  L  G  Q  D  I  K  A  H  P  S  V  Q  I  V  S  I  V  V  F  C  S  F  L  P  I  G  V  S  K  K  A  I  L  K  H  C  K  A  K  N  L  V  I  *  L  S  G  C  Y  K  D  D  V  C  D  L  P  *  S  *  N  W  E  N  P  I  G  V  F  G  L  W  L  F  F  F  K  G  C  F  E  K  C  K  *  K  I  Q  W  E  E  V  V  V  L  Q  T  R  I  W  A  Y  F  N  *  G  F  T  Y  W :   V  G  T  S  F  G  F  E  *  V  R  K  T  Y  F  I  D  *  C  F  *  S  G  C  G  *  P  T  Y  V  K  Q  E  L  A  *   : Y  C  W  C  R  E  P  S  F  N  V  C  S  *  A  D  F  W  C  W  W  Q  K  G  E  T  C  F  S  V  P  S  V  K  G  H  S  R  N  V  W  L  K  :  G  T  H  H  K  S  Q  K  V  S  *  N  H  *  N  D  P  Y  C  K  L  D  T  *  *  R  V  R  *  K  *  H  T  K  R :   K  G  D  Y  S  P  I  I  W  Y  *  S  G  S  T  G  W  *  F  Y  V  C  T  V  V  L  V  P  S  *  P  *  K  P  *  S  H  K  A  H  Q  S   : G  Y  *  R  L  C  K  W  *  N  K  A  G  L  *  L  V  R  L  *  C  W  T  G  *  I  F  A  Q  E  L  L  *  N  G  L  L  D  C  C  K  H  Q  R  S  C  H  F  Q  *  S  W  Q  *  Y  *  *  T  N  V  S  I  W  E  E  S  W  F  I  V  P  D  C  *  *  H  I  G  L  H  T  I  S  R  T  T  G  K  A  S  W  K  *  L  S  Q  G  K  P  Y  C  T  S  T  F  C  I  R  E  R  A  K  P  *  E  Y  N  R  I  R  I  S  R  C  W  F  S  R  G  G  H  Q  S  G  E  K  L  W  G  N  S  T  S  T  R  F  G  K  G  E  S  *  F  S  N  A  E  P  K  M  P  S  I  *  S  F  S  S  S  T  *  G  N  R  E  V  *  S  G  E  N  *  I  D  E  N  K  G  R  N  Y  T  T  L  V  Y  Y  S  L  K  A  L  H  I  *  Q  Y  L  E  H  R  V  E  A  I  T  I  V  *  M  A  T  T  I  R  T  K  V  L  H  Y  V  H  I  L  Y  P  Y  R  L  *  F  S  V  P  N  T  A  I  W  C  S  S  I  L  Y  N  L  A  N  K  L  S  N  F  N  C  C  C  T  L  K  K  F  H  I  T  N  N  V  M  Y  *  Y  L  L  L  A  F  L  D  E  H  I  C  Y  K  L  I  I  Q  *  T  Y  Y  T  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0102J11.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91989" stop="92181"/>
                    <exon start="92284" stop="92393"/>
                    <exon start="93537" stop="93664"/>
                    <exon start="93753" stop="93856"/>
                    <exon start="95178" stop="95305"/>
                    <exon start="95405" stop="95953"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1209</number_coding_nucleotides>
                  <number_encoded_amino_acids>403</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VGVTKMMSVTCHNLEIGRTPLESLACGCSFSKGVLRNVSRRFSGKKLLSCRQEFGRISTKASLTGLAPVLDLNKSEKPISLTNVFEVVADDLLTLNKNLHNIVGAENPVLMSAAEQIFGAGGKRVRPALVFLVSRATAEMSGLKELTTNHRRLAEIIEMIHTASLIHDDVLDESDTRRGKETIHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIKQASNLFDCDVGLDEYLLKSYYKTASLIAASTKGAAIFSEVGSDISEQMFQYGRNLGLSFQIVDDILDFTQSAAQLGKPAGSDLAKGNLTAPVLFALEKEPNLRNIIESEFHDAGSLEEAINLVKSCGGIQRAQDLAKEKADLAMQNLKCLPSSPFQAALEEIVKYNLERIE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0102J11.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91745" stop="91984"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ELKHSPTVFFFHFLSLNQTKDSIFYVVLFYPLNYFFLGQDIKAHPSVQIVSIVVFCSFLPIGVSKKAILKHCKAKNLVI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0102J11.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95928" stop="96140"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIIWRELNRRKQRTKLYNFGLLFSESSSYLTISGAQSRSYYYSLNGNNDQNESASLCSYIIPIQVVIFSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 27 chains have been computed
$ 
$ memory statistics:
$ 34472 bytes spliced alignments in total
$ 17 spliced alignments have been stored
$ 2027 bytes was the average size of a spliced alignment
$ 22848 bytes predicted gene locations in total
$ 14 predicted gene locations have been stored
$ 1632 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 29 backtrace matrices have been allocated
$ 
$ date finished: 2008-03-07 04:40:49
-->
