<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-04-18 00:11:55"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0103N02-XPPuU/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-nlezkx/sgn_ests_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nlezkx/sgn_ests_tomato" ref_id="SGN-E356339" ref_strand="+" ref_description="SGN-E356339 [cTOS-20-I24]">
      <seq>ggcaaagaggcaacattcctttctttgttccacctccaaagcttgatgatgagccaaatgaacttgtcgcagaggcagacacagccgttgataacgatcaggccacagctgctctcaaagctattgctgacgtcgtttcatcacaacaactgaaggaagttcctgttcaggaggaactatttagtaaggctgagctgttgggtgaaaactaatatgggcggattatcctttagacttgcaacatccacagttctggaatcgagttttcgtatatcgtttttacaatcttttagttgggtccattgcattcccagagttttctagtcctagaagagattgatatactggtcgaaaatatagatacctcgtatttttgttttaacgtttatttcgaattgagtgttaatggaaatgattaatatcatctagctcaacttgtttaagattgaagcttctttctgttctannnnaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-XPPuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="968" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="668" g_stop="198" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="472" polyA_stop="486"/>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E356339" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="668" e_stop="198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTAATATGGGCGGATTATCCTTTAGACTTGCAACATCCACAGTTCTGGAATCGAGTTTTCGTATATCGTTTTTACAATCTTTTAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTCGTATTTTTGTTTTAACGTTTATTTCGAATTGAGTGTTAATGGAAATGATTAATATCATCTAGCTCAACTTGTTTAAGATTGAAGCTTCTTTCTGTTCTATACGA</genome_strand>
        <mrna_strand>GGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTAATATGGGCGGATTATCCTTTAGACTTGCAACATCCACAGTTCTGGAATCGAGTTTTCGTATATCGTTTTTACAATCTTTTAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTCGTATTTTTGTTTTAACGTTTATTTCGAATTGAGTGTTAATGGAAATGATTAATATCATCTAGCTCAACTTGTTTAAGATTGAAGCTTCTTTCTGTTCTANNNNA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nlezkx/sgn_ests_tomato" ref_id="SGN-E355006" ref_strand="+" ref_description="SGN-E355006 [cTOS-19-N1]">
      <seq>tttctttgttccacctccaaagcttgatgatgagccaaatgaacttgtcgcagaggcagacacagccgttgataacgatcaggccacagctgctctcaaagctattgctgacgtcgtttcatcacaacaactgaaggaagttcctgttcaggaggaactatttagtaaggctgagctgttgggtgaaaactaatatgggcggattatcctttagacttgcaacatccacagttctggaatcgagttttcgtatatcgtttttacaatcttttagttgggtccattgcattcccagagttttctagtcctagaagagattgatatactggtcgaaaatatagatacctcgtatttttgttttaacgtttatttcgaattgagtgttaatggaaatgattaatatcatctagctcaacttgtttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-XPPuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="949" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="649" g_stop="217" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E355006" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="649" e_stop="217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTAATATGGGCGGATTATCCTTTAGACTTGCAACATCCACAGTTCTGGAATCGAGTTTTCGTATATCGTTTTTACAATCTTTTAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTCGTATTTTTGTTTTAACGTTTATTTCGAATTGAGTGTTAATGGAAATGATTAATATCATCTAGCTCAACTTGTTTAAGATTGAAGC</genome_strand>
        <mrna_strand>TTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTAATATGGGCGGATTATCCTTTAGACTTGCAACATCCACAGTTCTGGAATCGAGTTTTCGTATATCGTTTTTACAATCTTTTAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTCGTATTTTTGTTTTAACGTTTATTTCGAATTGAGTGTTAATGGAAATGATTAATATCATCTAGCTCAACTTGTTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nlezkx/sgn_ests_tomato" ref_id="SGN-E262241" ref_strand="-" ref_description="SGN-E262241 [cLEG-56-A8]">
      <seq>gaggatattcttgattgattgtcctggtgtagtttatcagaatcatgattccgaaacagatatagtcttgaagggcgtggtacgagtgacaaacctaccntgatgcttctgaacacattagcgaagtgttgaatcgcgttaagaaggagcatcttaaaagagcttataagatagagaattgggttgacgagtatgactttcttcaacagctatgcaagtcttcaggcaaacttctgaagggaggtgaacctgactacaatactgctgccaagatggttctccatgattggcaaagaggcaacattcctttctttgttccacctccaaagcttgatgatgagccaaatgaacttgtcgcagaggcagacacagccgttgataacgatcaggccacagctgctctcaaagctattgctgacgtcgtttcatcacaacaactgaaggaagttcctgttcaggaggaactatttagtaaggctgagctgttgggtgaaaactaatatgggcggattatcctttagacttgcaacatccacagttctggaatcgagttttcgtatatcgtttttacaatcttttagttgggtccattgcattcccagagttttctagtcctagaagagattgatatactggtcgaaaatatagatacctcgtatttttgttttaacgtttatttcgaattgagtgttaatggaaatgattaatatcatctagctcaacttgtttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-XPPuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="2981" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2681" g_stop="2603" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2602" i_stop="1641" i_length="962">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1640" g_stop="1540" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="181" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1539" i_stop="1264" i_length="276">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1263" g_stop="1206" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="239" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1205" i_stop="718" i_length="488">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="717" g_stop="225" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="732" r_length="493" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="733" polyA_stop="748"/>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E262241" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262241" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2681" e_stop="2603"/>
          <exon e_start="1640" e_stop="1540"/>
          <exon e_start="1263" e_stop="1206"/>
          <exon e_start="717" e_stop="225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTGGTATGTGTCTTCTACTTTGCTTTATCAGGCTTTTGCTTGTGCTTGTGACTTGTCAAAGTCAAGCTATATTTCTTGGTTTATTTTGATACCTACCGCTTTATTTAAAGGACTTTGGTATAAAAAGGACTTTTAAGGCATAGGTGGCCTGATTTTACCTAGATAATCTTGCTTGCAATATTTGTGGTCCTCTAGAGAAAAATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCCTACTCGAGCTATTAAGGAGGGAGAGGAGTTTTGGGTTCCTGAACTTTAGTCCAAACTCCCTAAGAGTTGTGCTATTGTCCTGTTTCCTGTTGGATATGTAATACACCATGAACTGGAACGTACTAGTATCAATAAAGAAAGATTTATAATCTACATAGCCCTCGATTTATGTGTTATTTATCCATTGCTACTTTTTTTATGCCAATGTTGGTGACTGGAGATAACTCTCTTCAATTAATCCTGGGGACCTTTATAAAAAAATTGAAAGATTTATCTTGTTGTATAGGATATCTTCCCTTTATTACAGATTCCTTTGCCTCGTCTCAGTTGATGAAATATCTTCTTGTCTATATCACTTTGCTGTAAGCATGAGGTTCTTTGACTGACTACCTCAAAACCTCAAAATTTGGGGTTCCATTTCCAGGTACGAGTGACAAACCTACC-TGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTGGTAAATTTTCTCATCATTTGATTTTATTTGTAGATTTCATCAAGTACTCAGCAAGACATTCTTCTAGTTTGTTTAGCCTGCTTCCTCGTAGATAGAAATGGGAACACATTGTAGTTGTATCTGCTTCGTCATTTGTTCTATTATATATGTACATTTGGTAAATTATCTCACCAAGTAGAATGAGAATCATGTATTCTTTCGGCAGTTTGTGTTGACACCCCCAAAATTCCATATCTAGAATCTCTGTTCTGCTTAAATGATATTTTGATATTCCAGGGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAGGTAAATTGAAAATTTATAACTTGATGATTATATTTTGTTATACTTTTCATTAGTCTCTCGGGTATGATCTGAAGTGTTTTGTGCTGTTTGTCAGCTCATATAGGACGATCACTTAAACCGGTTCCTTTTATGTTTTTTCATTAGTTCATGTAGGACAAAGTGAAGCTCACTAGACGAACACTTGGTAGTCAAAGTTAAAGTTATGTAGCAGTATTGTTGGACAAAAATAATTGAGAACTCAGTTGGCCTCTAATAAGTGTTAATTGTGAAGTAGCACTTTCAGGTTGAGAAATGATTTCCTAAATGATAGAAAAATTGTAATGTCAATTTTATATATATCTTTATTCTACAGGGATTTTCGATAAAATTTGCATATTTGGCTACAATTCTGCAATGTGCTTGACATCCTTGTACTACTTTTCTTTTAGTGCTTATGGCTGTCCAGAGAGTAGTATAGTTGGTATAAAATCTTAATTTGTGCTATTCAGGGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTAATATGGGCGGATTATCCTTTAGACTTGCAACATCCACAGTTCTGGAATCGAGTTTTCGTATATCGTTTTTACAATCTTTTAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTCGTATTTTTGTTTTAACGTTTATTTCGAATTGAGTGTTAATGGAAATGATTAATATCATCTAGCTCAACTTGTTTAAG</genome_strand>
        <mrna_strand>GAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGTGACAAACCTACCNTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTG....................................................................................................................................................................................................................................................................................GGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTAATATGGGCGGATTATCCTTTAGACTTGCAACATCCACAGTTCTGGAATCGAGTTTTCGTATATCGTTTTTACAATCTTTTAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTCGTATTTTTGTTTTAACGTTTATTTCGAATTGAGTGTTAATGGAAATGATTAATATCATCTAGCTCAACTTGTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nlezkx/sgn_ests_tomato" ref_id="SGN-E263600" ref_strand="-" ref_description="SGN-E263600 [cLEG-60-B24]">
      <seq>tgaagggcgtggtacgagtgacaaacctaccctgatgcttctgaacacattagcgaagtgttgaatcgcgttaagaaggagcatcttaaaagagcttataagatagagaattgggttgacgagtatgactttcttcaacagctatgcaagtcttcaggcaaacttctgaagggaggtgaacctgactacaatactgctgccaagatggttctccatgattggcaaagaggcaacattcctttctttgttccacctccaaagcttgatgatgagccaaatgaacttgtcgcagaggcagacacagccgttgataacgatcaggccacagctgctctcaaagctattgctgacgtcgtttcatcacaacaactgaaggaagttcctgttcaggaggaactatttagtaaggctgagctgttgggtgaaaactaatatgggcggattatcctttagacttgcaacatccacagttctggaatcgagttttcgtatatcgtttttacaatcttttagttgggtccattgcattcccagagttttctagtcctagaagagattgatatactggtcgaaaatatagatacctcgtatttttgttttaacgtttatttcgaattgagtgttaatggaaatgattaatatcatctagctcaacttgtttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-XPPuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="1941" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1640" g_stop="1540" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="113" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1539" i_stop="1264" i_length="276">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1263" g_stop="1206" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="171" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1205" i_stop="718" i_length="488">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="717" g_stop="225" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="664" r_length="493" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="665" polyA_stop="680"/>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E263600" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263600" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="1640" e_stop="1540"/>
          <exon e_start="1263" e_stop="1206"/>
          <exon e_start="717" e_stop="225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACGAGTGACAAACCTA-CCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTGGTAAATTTTCTCATCATTTGATTTTATTTGTAGATTTCATCAAGTACTCAGCAAGACATTCTTCTAGTTTGTTTAGCCTGCTTCCTCGTAGATAGAAATGGGAACACATTGTAGTTGTATCTGCTTCGTCATTTGTTCTATTATATATGTACATTTGGTAAATTATCTCACCAAGTAGAATGAGAATCATGTATTCTTTCGGCAGTTTGTGTTGACACCCCCAAAATTCCATATCTAGAATCTCTGTTCTGCTTAAATGATATTTTGATATTCCAGGGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAGGTAAATTGAAAATTTATAACTTGATGATTATATTTTGTTATACTTTTCATTAGTCTCTCGGGTATGATCTGAAGTGTTTTGTGCTGTTTGTCAGCTCATATAGGACGATCACTTAAACCGGTTCCTTTTATGTTTTTTCATTAGTTCATGTAGGACAAAGTGAAGCTCACTAGACGAACACTTGGTAGTCAAAGTTAAAGTTATGTAGCAGTATTGTTGGACAAAAATAATTGAGAACTCAGTTGGCCTCTAATAAGTGTTAATTGTGAAGTAGCACTTTCAGGTTGAGAAATGATTTCCTAAATGATAGAAAAATTGTAATGTCAATTTTATATATATCTTTATTCTACAGGGATTTTCGATAAAATTTGCATATTTGGCTACAATTCTGCAATGTGCTTGACATCCTTGTACTACTTTTCTTTTAGTGCTTATGGCTGTCCAGAGAGTAGTATAGTTGGTATAAAATCTTAATTTGTGCTATTCAGGGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTAATATGGGCGGATTATCCTTTAGACTTGCAACATCCACAGTTCTGGAATCGAGTTTTCGTATATCGTTTTTACAATCTTTTAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTCGTATTTTTGTTTTAACGTTTATTTCGAATTGAGTGTTAATGGAAATGATTAATATCATCTAGCTCAACTTGTTTAAG</genome_strand>
        <mrna_strand>GTACGAGTGACAAACCTACCCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTG....................................................................................................................................................................................................................................................................................GGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTAATATGGGCGGATTATCCTTTAGACTTGCAACATCCACAGTTCTGGAATCGAGTTTTCGTATATCGTTTTTACAATCTTTTAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTCGTATTTTTGTTTTAACGTTTATTTCGAATTGAGTGTTAATGGAAATGATTAATATCATCTAGCTCAACTTGTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nlezkx/sgn_ests_tomato" ref_id="SGN-E258121" ref_strand="-" ref_description="SGN-E258121 [cLEG-48-N3]">
      <seq>aaagcttgatgatgagccaaatgaacttgtcgcagaggcagacacagccgttgataacgatcaggccacagctgctctcaaagctattgctgacgtcgtttcatcacaacaactgaaggaagttcctgttcaggaggaactatttagtaaggctgagctgttgggtgaaaactaatatgggcggattatcctttagacttgcaacatccacagttctggaatcgagttttcgtatatcgtttttacaatcttttagttgggtccattgcattcccagagttttctagtcctagaagagattgatatactggtcgaaaatatagatacctcgtatttttgttttaacgtttatttcgaattgagtgttaatggaaatgattaatatcatctagctcaacttgttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-XPPuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="931" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="631" g_stop="232" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="404" polyA_stop="422"/>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E258121" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258121" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="631" e_stop="232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTAATATGGGCGGATTATCCTTTAGACTTGCAACATCCACAGTTCTGGAATCGAGTTTTCGTATATCGTTTTTACAATCTTTTAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTCGTATTTTTGTTTTAACGTTTATTTCGAATTGAGTGTTAATGGAAATGATTAATATCATCTAGCTCAACTT</genome_strand>
        <mrna_strand>AAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTAATATGGGCGGATTATCCTTTAGACTTGCAACATCCACAGTTCTGGAATCGAGTTTTCGTATATCGTTTTTACAATCTTTTAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTCGTATTTTTGTTTTAACGTTTATTTCGAATTGAGTGTTAATGGAAATGATTAATATCATCTAGCTCAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nlezkx/sgn_ests_tomato" ref_id="SGN-E747304" ref_strand="+" ref_description="SGN-E747304 [GI|47104658]">
      <seq>tggagtgtgtactacaaaccggcctagacgactgaggtattaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatctgcttgacaatgagccatttgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatgctgatggattcagagatcttgttaggcacacaatgtttgagaaaggacaaagtaaacgaatttggagtgagctctacaaagtcatagactcttctgatgtcgttattcaggttcttgatgccagagacccctgtggtacaaggtgctaccatttggagaaacatttgaaagaaaattgcaagcacaaacatatggtccttttgcttaataagtgtgatttggtccctgcttgggcaacaaagggatggcttagagtgctctctagggaatatccaactttggcatttcatgcaagtgtcaccaagtcctttggaaagggttctcttttgtcagtgctgagacagttttctcgtctaaagagcgataagcaagcaatctctgttggttttataggctatcccaatgttggcaagtcatcagttattaatacattgcgcacaaagaatgtttgcaaggtggctcctatcccaggagagactaaagtgtggcagtacattacactcacaaagaggatattcttgattgattgtcctggtgtagtttatcagaatcatgattccgaaacagatatagtcttgaagggcgtggtacgagtgacaaacctacctgatgcttctgaacacattagcgaagtgttgaatcgcgttaagaaggagcatcttaaaagagcttataagatagagaattgggttgacgagtatgactttcttcaacagctatgcaagtcttcaggcaaacttctgaagggaggtgaacctgactacaatactgctgccaagatggttctccatgattggcaaagaggcaacattcctttctttgttccacctccaaagcttgatgatgagccaaatgaacttgtcgcagaggcagacacagccgttgataacgatcaggccacagctgctctcaaagctattgctgacgtcgtttcatcacaacaactgaaggaagttcctgttcaggaggaactatttagtaaggctgagctgttgggtgaaaactaatatgggcggattatcctttagacttgcaacatccacagttctggaatcgagttttcgtatatcgtttttacaatcttttagttgggtccattgcattcccagagttttctagtcctagaagagattgatatactggtcgaaaatatagatacctcgtatttttgttttaacgtttatttcgaattgagtgttaatggaaatgattaatatcttttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-XPPuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6257" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5957" g_stop="5634" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="458" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="588" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4644" g_stop="4487" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="746" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4486" i_stop="3991" i_length="496">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3990" g_stop="3889" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="747" r_stop="848" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3888" i_stop="3729" i_length="160">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3728" g_stop="3624" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="849" r_stop="953" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="3623" i_stop="3463" i_length="161">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3462" g_stop="3334" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="954" r_stop="1082" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="3333" i_stop="2744" i_length="590">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="2743" g_stop="2603" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1083" r_stop="1223" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="2602" i_stop="1641" i_length="962">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="1640" g_stop="1540" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1224" r_stop="1324" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="1539" i_stop="1264" i_length="276">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="1263" g_stop="1206" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1325" r_stop="1382" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="1205" i_stop="718" i_length="488">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="717" g_stop="246" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1383" r_stop="1854" r_length="472" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1859" polyA_stop="1873"/>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E747304" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1854</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5957" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4487"/>
          <exon e_start="3990" e_stop="3889"/>
          <exon e_start="3728" e_stop="3624"/>
          <exon e_start="3462" e_stop="3334"/>
          <exon e_start="2743" e_stop="2603"/>
          <exon e_start="1640" e_stop="1540"/>
          <exon e_start="1263" e_stop="1206"/>
          <exon e_start="717" e_stop="246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGTGTATACTACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAGGTTTGTTTCGTGGCTTTAAACTCCTGCTATATCTAATATCTAAAATGAAGTATGTTATTTGATGTTGATGTTCTTCCAACTAAATGCTTTTCTGGTGAAAAATGCAAAAAAATTTCTCTTGTATCCAAGTGTAAAACAATCACATCTTACTTAACCAAGCATACCAGGCTCAACTTGTCTGTCCTGATTTTTTCCTTGTTGCTTATTTGGTGGGCCCATGAAGTTTCAGTTAGTGTAGAAGATTGAATGTTGTGTTTACTTAGAGAACCGTGTTATGTTGTAGAGTCTATACTTCGTAGTCTGCTCCTTAATTACAGGAGAGTTCCCCATTATTAATAAAATTGTTTACTTTATTCAAAAATCACCTGTCTGCTGTGTATGGACGGTATAATGTTCTGATCTAGTTTTCTCTGTCTAAGGAGGAAAGTATAGGATATTTTAGATGAAAGGTATACTGCTGGAAGTTGTAACTTACTGTGGTTAACCTGGATTGCAGGTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAGGTTTGCTATTATTATTAACATAGTAGACATTTTTTCTTTATTATATATATTTCTATTTCCCCTTCGGCCTCTCTCTTTGAGTTGTCTTGGCTTCTTTTTTCAGGATGTCAGTTTTAACTTCAGGATTTGTTAAAATTGATAATTTGTTCTGCCTATGTAGTGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAGGTATTCTTGTAGTGCCTTCTGATCTTGCCCCACCTCTGAATATAGACATACACTAAGTACCATAGTGATTTGTAAAATTATGGCTAATTGTGCATCCATGTGCTTGTGCCCCTGCGGGTAACTTTTTGTCTGTTACTTATTTTGTTTTCTTGGGCATTCAGGGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAATGTAAGTTTTCCCATATGTTCTCCTGCCTTTCCAGTCTGTTGTGATCTTCTTTGCTCATTTGTTTCTGTACTGAGACAGTTTGCAATTTGTCTCCTTGAGAATCGTCTTTTCCGTGATACTTCTTTGTTAGACATGATTGGTGAATTGCACAATTTGTTACTTCAATTTTTGCTCTTATCTTTATGAGACTCTTTACCTGATACAATTCTTCCTCGTTATCGAAAAATTGTGATTGCCATTCAAGCTGTTCCAAATTTGATTTTAGCTAATCATGTGATGCTGCTTTTAGGAAGATTAAATGCAGGATAGTGAAGAGTAAACTTGATGTTCCAGACTATATTCACGAGTATCAGATATTTATACAGCTCTAAAACTTAATTTCCTAACCTTTCACCTTCTCTGTTAATATTAAATAAAGGAAACTTGTTTTCTTGTCGGATAATGACTGTTGTTTTTCTTGTCACCTGTACTTGACGTGTAAAAAGTCAAATCTTGTGAAATGTAATCTCACTTTGAGTACTATGCTCAGACAACCACATACATTTTGATATGGTCGTGGAACTAACCTTTGCTCCTTTCCTTTGGAATAGGTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTGGTATGTGTCTTCTACTTTGCTTTATCAGGCTTTTGCTTGTGCTTGTGACTTGTCAAAGTCAAGCTATATTTCTTGGTTTATTTTGATACCTACCGCTTTATTTAAAGGACTTTGGTATAAAAAGGACTTTTAAGGCATAGGTGGCCTGATTTTACCTAGATAATCTTGCTTGCAATATTTGTGGTCCTCTAGAGAAAAATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCCTACTCGAGCTATTAAGGAGGGAGAGGAGTTTTGGGTTCCTGAACTTTAGTCCAAACTCCCTAAGAGTTGTGCTATTGTCCTGTTTCCTGTTGGATATGTAATACACCATGAACTGGAACGTACTAGTATCAATAAAGAAAGATTTATAATCTACATAGCCCTCGATTTATGTGTTATTTATCCATTGCTACTTTTTTTATGCCAATGTTGGTGACTGGAGATAACTCTCTTCAATTAATCCTGGGGACCTTTATAAAAAAATTGAAAGATTTATCTTGTTGTATAGGATATCTTCCCTTTATTACAGATTCCTTTGCCTCGTCTCAGTTGATGAAATATCTTCTTGTCTATATCACTTTGCTGTAAGCATGAGGTTCTTTGACTGACTACCTCAAAACCTCAAAATTTGGGGTTCCATTTCCAGGTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTGGTAAATTTTCTCATCATTTGATTTTATTTGTAGATTTCATCAAGTACTCAGCAAGACATTCTTCTAGTTTGTTTAGCCTGCTTCCTCGTAGATAGAAATGGGAACACATTGTAGTTGTATCTGCTTCGTCATTTGTTCTATTATATATGTACATTTGGTAAATTATCTCACCAAGTAGAATGAGAATCATGTATTCTTTCGGCAGTTTGTGTTGACACCCCCAAAATTCCATATCTAGAATCTCTGTTCTGCTTAAATGATATTTTGATATTCCAGGGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAGGTAAATTGAAAATTTATAACTTGATGATTATATTTTGTTATACTTTTCATTAGTCTCTCGGGTATGATCTGAAGTGTTTTGTGCTGTTTGTCAGCTCATATAGGACGATCACTTAAACCGGTTCCTTTTATGTTTTTTCATTAGTTCATGTAGGACAAAGTGAAGCTCACTAGACGAACACTTGGTAGTCAAAGTTAAAGTTATGTAGCAGTATTGTTGGACAAAAATAATTGAGAACTCAGTTGGCCTCTAATAAGTGTTAATTGTGAAGTAGCACTTTCAGGTTGAGAAATGATTTCCTAAATGATAGAAAAATTGTAATGTCAATTTTATATATATCTTTATTCTACAGGGATTTTCGATAAAATTTGCATATTTGGCTACAATTCTGCAATGTGCTTGACATCCTTGTACTACTTTTCTTTTAGTGCTTATGGCTGTCCAGAGAGTAGTATAGTTGGTATAAAATCTTAATTTGTGCTATTCAGGGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTAATATGGGCGGATTATCCTTTAGACTTGCAACATCCACAGTTCTGGAATCGAGTTTTCGTATATCGTTTTTACAATCTTTTAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTCGTATTTTTGTTTTAACGTTTATTTCGAATTGAGTGTTAATGGAAATGATTAATATC</genome_strand>
        <mrna_strand>TGGAGTGTGTACTACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAG................................................................................................................................................................TGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAG.................................................................................................................................................................GGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTG....................................................................................................................................................................................................................................................................................GGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTAATATGGGCGGATTATCCTTTAGACTTGCAACATCCACAGTTCTGGAATCGAGTTTTCGTATATCGTTTTTACAATCTTTTAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTCGTATTTTTGTTTTAACGTTTATTTCGAATTGAGTGTTAATGGAAATGATTAATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nlezkx/sgn_ests_tomato" ref_id="SGN-E700357" ref_strand="+" ref_description="SGN-E700357 [FA12DF01]">
      <seq>gctttgcttaataagtgtgatttggtccctgcttgggcaacaaagggatggcttagagtgctctctagggaatatccaactttggcatttcatgcaagtgtcaccaagtcctttggaaagggttctcttttgtcagtgctgagacagttttctcgtctaaagagcgataagcaagcaatctctgttggttttataggctatcccaatgttggcaagtcatcagttattaatacattgcgcacaaagaatgtttgcaaggtggctcctatcccaggagagactaaagtgtggcagtacattacactcacaaagaggatattcttgattgattgtcctggtgtagtttatcagaatcatgattccgaaacagatatagtcttgaagggcgtggtacgagtgacaaacctacctgatgcttctgaacacattagcgaagtgttgaatcgcgttaagaaggagcatcttaaaagagcttataagatagagaattgggttgacgagtatgactttcttcaacagctatgcaagtcttcaggcaaacttctgaagggaggtgaacctgactacaatactgctgccaagatggttctccatgattggcaaagaggcaacattcctttctttgttccacctccaaagcttgatgatgagccnaatgaacttgtcgctgaggcagacacagccgttgataacgatcaggccacagctgctctcaaagctattgctgacgtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-XPPuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="4030" stop="234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3903" g_stop="3889" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="0.867"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3888" i_stop="3729" i_length="160">
            <donor d_prob="0.927" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3728" g_stop="3624" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="120" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3623" i_stop="3463" i_length="161">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3462" g_stop="3334" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="249" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3333" i_stop="2744" i_length="590">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2743" g_stop="2603" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="390" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2602" i_stop="1641" i_length="962">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1640" g_stop="1540" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="491" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1539" i_stop="1264" i_length="276">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="1263" g_stop="1206" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="549" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="1205" i_stop="718" i_length="488">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="717" g_stop="534" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="733" r_length="184" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E700357" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3903" e_stop="3889"/>
          <exon e_start="3728" e_stop="3624"/>
          <exon e_start="3462" e_stop="3334"/>
          <exon e_start="2743" e_stop="2603"/>
          <exon e_start="1640" e_stop="1540"/>
          <exon e_start="1263" e_stop="1206"/>
          <exon e_start="717" e_stop="534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTGCTTAATAAGGTTTGCTATTATTATTAACATAGTAGACATTTTTTCTTTATTATATATATTTCTATTTCCCCTTCGGCCTCTCTCTTTGAGTTGTCTTGGCTTCTTTTTTCAGGATGTCAGTTTTAACTTCAGGATTTGTTAAAATTGATAATTTGTTCTGCCTATGTAGTGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAGGTATTCTTGTAGTGCCTTCTGATCTTGCCCCACCTCTGAATATAGACATACACTAAGTACCATAGTGATTTGTAAAATTATGGCTAATTGTGCATCCATGTGCTTGTGCCCCTGCGGGTAACTTTTTGTCTGTTACTTATTTTGTTTTCTTGGGCATTCAGGGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAATGTAAGTTTTCCCATATGTTCTCCTGCCTTTCCAGTCTGTTGTGATCTTCTTTGCTCATTTGTTTCTGTACTGAGACAGTTTGCAATTTGTCTCCTTGAGAATCGTCTTTTCCGTGATACTTCTTTGTTAGACATGATTGGTGAATTGCACAATTTGTTACTTCAATTTTTGCTCTTATCTTTATGAGACTCTTTACCTGATACAATTCTTCCTCGTTATCGAAAAATTGTGATTGCCATTCAAGCTGTTCCAAATTTGATTTTAGCTAATCATGTGATGCTGCTTTTAGGAAGATTAAATGCAGGATAGTGAAGAGTAAACTTGATGTTCCAGACTATATTCACGAGTATCAGATATTTATACAGCTCTAAAACTTAATTTCCTAACCTTTCACCTTCTCTGTTAATATTAAATAAAGGAAACTTGTTTTCTTGTCGGATAATGACTGTTGTTTTTCTTGTCACCTGTACTTGACGTGTAAAAAGTCAAATCTTGTGAAATGTAATCTCACTTTGAGTACTATGCTCAGACAACCACATACATTTTGATATGGTCGTGGAACTAACCTTTGCTCCTTTCCTTTGGAATAGGTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTGGTATGTGTCTTCTACTTTGCTTTATCAGGCTTTTGCTTGTGCTTGTGACTTGTCAAAGTCAAGCTATATTTCTTGGTTTATTTTGATACCTACCGCTTTATTTAAAGGACTTTGGTATAAAAAGGACTTTTAAGGCATAGGTGGCCTGATTTTACCTAGATAATCTTGCTTGCAATATTTGTGGTCCTCTAGAGAAAAATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCCTACTCGAGCTATTAAGGAGGGAGAGGAGTTTTGGGTTCCTGAACTTTAGTCCAAACTCCCTAAGAGTTGTGCTATTGTCCTGTTTCCTGTTGGATATGTAATACACCATGAACTGGAACGTACTAGTATCAATAAAGAAAGATTTATAATCTACATAGCCCTCGATTTATGTGTTATTTATCCATTGCTACTTTTTTTATGCCAATGTTGGTGACTGGAGATAACTCTCTTCAATTAATCCTGGGGACCTTTATAAAAAAATTGAAAGATTTATCTTGTTGTATAGGATATCTTCCCTTTATTACAGATTCCTTTGCCTCGTCTCAGTTGATGAAATATCTTCTTGTCTATATCACTTTGCTGTAAGCATGAGGTTCTTTGACTGACTACCTCAAAACCTCAAAATTTGGGGTTCCATTTCCAGGTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTGGTAAATTTTCTCATCATTTGATTTTATTTGTAGATTTCATCAAGTACTCAGCAAGACATTCTTCTAGTTTGTTTAGCCTGCTTCCTCGTAGATAGAAATGGGAACACATTGTAGTTGTATCTGCTTCGTCATTTGTTCTATTATATATGTACATTTGGTAAATTATCTCACCAAGTAGAATGAGAATCATGTATTCTTTCGGCAGTTTGTGTTGACACCCCCAAAATTCCATATCTAGAATCTCTGTTCTGCTTAAATGATATTTTGATATTCCAGGGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAGGTAAATTGAAAATTTATAACTTGATGATTATATTTTGTTATACTTTTCATTAGTCTCTCGGGTATGATCTGAAGTGTTTTGTGCTGTTTGTCAGCTCATATAGGACGATCACTTAAACCGGTTCCTTTTATGTTTTTTCATTAGTTCATGTAGGACAAAGTGAAGCTCACTAGACGAACACTTGGTAGTCAAAGTTAAAGTTATGTAGCAGTATTGTTGGACAAAAATAATTGAGAACTCAGTTGGCCTCTAATAAGTGTTAATTGTGAAGTAGCACTTTCAGGTTGAGAAATGATTTCCTAAATGATAGAAAAATTGTAATGTCAATTTTATATATATCTTTATTCTACAGGGATTTTCGATAAAATTTGCATATTTGGCTACAATTCTGCAATGTGCTTGACATCCTTGTACTACTTTTCTTTTAGTGCTTATGGCTGTCCAGAGAGTAGTATAGTTGGTATAAAATCTTAATTTGTGCTATTCAGGGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCG</genome_strand>
        <mrna_strand>GCTTTGCTTAATAAG................................................................................................................................................................TGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAG.................................................................................................................................................................GGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTG....................................................................................................................................................................................................................................................................................GGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCNAATGAACTTGTCGCTGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nlezkx/sgn_ests_tomato" ref_id="SGN-E254505" ref_strand="+" ref_description="SGN-E254505 [cLEG-29-O15]">
      <seq>gttctcttttgtcagtgctgagacagttttctcgtgctaaagagcgataagcaagcaatctctgttggttttataggctatcccaatgttggcaagtcatcagttattaataccattgcgcacaaagaatgtttgcaaggtggctcctatcccaggagagactaaagtgtggcagtacattacactcaccaaagaggatattcttgattgattgtcctggtgtagtttatcagaatcatgattccgaaacagatatagtcttgaagggcgtggtacgagtgacaaacctacctgatgcttctgaacacattagcgaagtgttgaatcgcgttaagaaggagcatcttaaaagagcttataagatagagaattgggttgacgagtatgactttcttcaacagctatgcaagtcttcaggcaaacttctgaagggaggtgaacctgactacaatactgctgccaagatggttctccatgattggcaaagaggcaacattcctttctttgttccacctccaaagcttgatgatgagccaaatgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-XPPuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="3761" stop="306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3461" g_stop="3334" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3333" i_stop="2744" i_length="590">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2743" g_stop="2603" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="272" r_length="142" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2602" i_stop="1641" i_length="962">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1640" g_stop="1540" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="373" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1539" i_stop="1264" i_length="276">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1263" g_stop="1206" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="431" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1205" i_stop="718" i_length="488">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="717" g_stop="606" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="543" r_length="112" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E254505" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3461" e_stop="3334"/>
          <exon e_start="2743" e_stop="2603"/>
          <exon e_start="1640" e_stop="1540"/>
          <exon e_start="1263" e_stop="1206"/>
          <exon e_start="717" e_stop="606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGT-CTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATA-CATTGCGCACAAAGAATGTAAGTTTTCCCATATGTTCTCCTGCCTTTCCAGTCTGTTGTGATCTTCTTTGCTCATTTGTTTCTGTACTGAGACAGTTTGCAATTTGTCTCCTTGAGAATCGTCTTTTCCGTGATACTTCTTTGTTAGACATGATTGGTGAATTGCACAATTTGTTACTTCAATTTTTGCTCTTATCTTTATGAGACTCTTTACCTGATACAATTCTTCCTCGTTATCGAAAAATTGTGATTGCCATTCAAGCTGTTCCAAATTTGATTTTAGCTAATCATGTGATGCTGCTTTTAGGAAGATTAAATGCAGGATAGTGAAGAGTAAACTTGATGTTCCAGACTATATTCACGAGTATCAGATATTTATACAGCTCTAAAACTTAATTTCCTAACCTTTCACCTTCTCTGTTAATATTAAATAAAGGAAACTTGTTTTCTTGTCGGATAATGACTGTTGTTTTTCTTGTCACCTGTACTTGACGTGTAAAAAGTCAAATCTTGTGAAATGTAATCTCACTTTGAGTACTATGCTCAGACAACCACATACATTTTGATATGGTCGTGGAACTAACCTTTGCTCCTTTCCTTTGGAATAGGTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCA-CAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTGGTATGTGTCTTCTACTTTGCTTTATCAGGCTTTTGCTTGTGCTTGTGACTTGTCAAAGTCAAGCTATATTTCTTGGTTTATTTTGATACCTACCGCTTTATTTAAAGGACTTTGGTATAAAAAGGACTTTTAAGGCATAGGTGGCCTGATTTTACCTAGATAATCTTGCTTGCAATATTTGTGGTCCTCTAGAGAAAAATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCCTACTCGAGCTATTAAGGAGGGAGAGGAGTTTTGGGTTCCTGAACTTTAGTCCAAACTCCCTAAGAGTTGTGCTATTGTCCTGTTTCCTGTTGGATATGTAATACACCATGAACTGGAACGTACTAGTATCAATAAAGAAAGATTTATAATCTACATAGCCCTCGATTTATGTGTTATTTATCCATTGCTACTTTTTTTATGCCAATGTTGGTGACTGGAGATAACTCTCTTCAATTAATCCTGGGGACCTTTATAAAAAAATTGAAAGATTTATCTTGTTGTATAGGATATCTTCCCTTTATTACAGATTCCTTTGCCTCGTCTCAGTTGATGAAATATCTTCTTGTCTATATCACTTTGCTGTAAGCATGAGGTTCTTTGACTGACTACCTCAAAACCTCAAAATTTGGGGTTCCATTTCCAGGTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTGGTAAATTTTCTCATCATTTGATTTTATTTGTAGATTTCATCAAGTACTCAGCAAGACATTCTTCTAGTTTGTTTAGCCTGCTTCCTCGTAGATAGAAATGGGAACACATTGTAGTTGTATCTGCTTCGTCATTTGTTCTATTATATATGTACATTTGGTAAATTATCTCACCAAGTAGAATGAGAATCATGTATTCTTTCGGCAGTTTGTGTTGACACCCCCAAAATTCCATATCTAGAATCTCTGTTCTGCTTAAATGATATTTTGATATTCCAGGGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAGGTAAATTGAAAATTTATAACTTGATGATTATATTTTGTTATACTTTTCATTAGTCTCTCGGGTATGATCTGAAGTGTTTTGTGCTGTTTGTCAGCTCATATAGGACGATCACTTAAACCGGTTCCTTTTATGTTTTTTCATTAGTTCATGTAGGACAAAGTGAAGCTCACTAGACGAACACTTGGTAGTCAAAGTTAAAGTTATGTAGCAGTATTGTTGGACAAAAATAATTGAGAACTCAGTTGGCCTCTAATAAGTGTTAATTGTGAAGTAGCACTTTCAGGTTGAGAAATGATTTCCTAAATGATAGAAAAATTGTAATGTCAATTTTATATATATCTTTATTCTACAGGGATTTTCGATAAAATTTGCATATTTGGCTACAATTCTGCAATGTGCTTGACATCCTTGTACTACTTTTCTTTTAGTGCTTATGGCTGTCCAGAGAGTAGTATAGTTGGTATAAAATCTTAATTTGTGCTATTCAGGGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAAC</genome_strand>
        <mrna_strand>GTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTGCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACCATTGCGCACAAAGAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACCAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTG....................................................................................................................................................................................................................................................................................GGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nlezkx/sgn_ests_tomato" ref_id="SGN-E266964" ref_strand="+" ref_description="SGN-E266964 [cLEI-7-N11]">
      <seq>aagtcctttggaaagggttctcttttgtcagtgctgagacagttttctcgtctaaagagcgataagcaagcaatctctgttggttttataggctatcccaatgttggcaagtcatcagttattaatacattgcgcacaaagaatgtttgcaaggtggctcctatcccaggagagactaaagtgtggcagtacattacactcacaaagaggatattcttgattgattgtcctggtgtagtttatcagaatcatgattccgaaacagatatagtcttgaagggcgtggtacgagtgacaaacctacctgatgcttctgaacacattaacgaagtgttgaatcgcgttaagaaggagcatcttaaaagagcttataagatagagaattgggttgacgagtatgactttcttcaacagctatgcaagtcttcacgcaaacttctgaagggaggtgaacctgactacaatactgctgccaagatggttctccatgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-XPPuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="3764" stop="368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3638" g_stop="3624" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3623" i_stop="3463" i_length="161">
            <donor d_prob="0.903" d_score="0.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3462" g_stop="3334" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="144" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3333" i_stop="2744" i_length="590">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2743" g_stop="2603" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="285" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2602" i_stop="1641" i_length="962">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1640" g_stop="1540" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="386" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1539" i_stop="1264" i_length="276">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1263" g_stop="1206" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="444" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1205" i_stop="718" i_length="488">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="717" g_stop="668" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="494" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E266964" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3638" e_stop="3624"/>
          <exon e_start="3462" e_stop="3334"/>
          <exon e_start="2743" e_stop="2603"/>
          <exon e_start="1640" e_stop="1540"/>
          <exon e_start="1263" e_stop="1206"/>
          <exon e_start="717" e_stop="668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTCCTTTGGAAAGGTATTCTTGTAGTGCCTTCTGATCTTGCCCCACCTCTGAATATAGACATACACTAAGTACCATAGTGATTTGTAAAATTATGGCTAATTGTGCATCCATGTGCTTGTGCCCCTGCGGGTAACTTTTTGTCTGTTACTTATTTTGTTTTCTTGGGCATTCAGGGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAATGTAAGTTTTCCCATATGTTCTCCTGCCTTTCCAGTCTGTTGTGATCTTCTTTGCTCATTTGTTTCTGTACTGAGACAGTTTGCAATTTGTCTCCTTGAGAATCGTCTTTTCCGTGATACTTCTTTGTTAGACATGATTGGTGAATTGCACAATTTGTTACTTCAATTTTTGCTCTTATCTTTATGAGACTCTTTACCTGATACAATTCTTCCTCGTTATCGAAAAATTGTGATTGCCATTCAAGCTGTTCCAAATTTGATTTTAGCTAATCATGTGATGCTGCTTTTAGGAAGATTAAATGCAGGATAGTGAAGAGTAAACTTGATGTTCCAGACTATATTCACGAGTATCAGATATTTATACAGCTCTAAAACTTAATTTCCTAACCTTTCACCTTCTCTGTTAATATTAAATAAAGGAAACTTGTTTTCTTGTCGGATAATGACTGTTGTTTTTCTTGTCACCTGTACTTGACGTGTAAAAAGTCAAATCTTGTGAAATGTAATCTCACTTTGAGTACTATGCTCAGACAACCACATACATTTTGATATGGTCGTGGAACTAACCTTTGCTCCTTTCCTTTGGAATAGGTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTGGTATGTGTCTTCTACTTTGCTTTATCAGGCTTTTGCTTGTGCTTGTGACTTGTCAAAGTCAAGCTATATTTCTTGGTTTATTTTGATACCTACCGCTTTATTTAAAGGACTTTGGTATAAAAAGGACTTTTAAGGCATAGGTGGCCTGATTTTACCTAGATAATCTTGCTTGCAATATTTGTGGTCCTCTAGAGAAAAATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCCTACTCGAGCTATTAAGGAGGGAGAGGAGTTTTGGGTTCCTGAACTTTAGTCCAAACTCCCTAAGAGTTGTGCTATTGTCCTGTTTCCTGTTGGATATGTAATACACCATGAACTGGAACGTACTAGTATCAATAAAGAAAGATTTATAATCTACATAGCCCTCGATTTATGTGTTATTTATCCATTGCTACTTTTTTTATGCCAATGTTGGTGACTGGAGATAACTCTCTTCAATTAATCCTGGGGACCTTTATAAAAAAATTGAAAGATTTATCTTGTTGTATAGGATATCTTCCCTTTATTACAGATTCCTTTGCCTCGTCTCAGTTGATGAAATATCTTCTTGTCTATATCACTTTGCTGTAAGCATGAGGTTCTTTGACTGACTACCTCAAAACCTCAAAATTTGGGGTTCCATTTCCAGGTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTGGTAAATTTTCTCATCATTTGATTTTATTTGTAGATTTCATCAAGTACTCAGCAAGACATTCTTCTAGTTTGTTTAGCCTGCTTCCTCGTAGATAGAAATGGGAACACATTGTAGTTGTATCTGCTTCGTCATTTGTTCTATTATATATGTACATTTGGTAAATTATCTCACCAAGTAGAATGAGAATCATGTATTCTTTCGGCAGTTTGTGTTGACACCCCCAAAATTCCATATCTAGAATCTCTGTTCTGCTTAAATGATATTTTGATATTCCAGGGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAGGTAAATTGAAAATTTATAACTTGATGATTATATTTTGTTATACTTTTCATTAGTCTCTCGGGTATGATCTGAAGTGTTTTGTGCTGTTTGTCAGCTCATATAGGACGATCACTTAAACCGGTTCCTTTTATGTTTTTTCATTAGTTCATGTAGGACAAAGTGAAGCTCACTAGACGAACACTTGGTAGTCAAAGTTAAAGTTATGTAGCAGTATTGTTGGACAAAAATAATTGAGAACTCAGTTGGCCTCTAATAAGTGTTAATTGTGAAGTAGCACTTTCAGGTTGAGAAATGATTTCCTAAATGATAGAAAAATTGTAATGTCAATTTTATATATATCTTTATTCTACAGGGATTTTCGATAAAATTTGCATATTTGGCTACAATTCTGCAATGTGCTTGACATCCTTGTACTACTTTTCTTTTAGTGCTTATGGCTGTCCAGAGAGTAGTATAGTTGGTATAAAATCTTAATTTGTGCTATTCAGGGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTG</genome_strand>
        <mrna_strand>AAGTCCTTTGGAAAG.................................................................................................................................................................GGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAACGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTG....................................................................................................................................................................................................................................................................................GGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCACGCAAACTTCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nlezkx/sgn_ests_tomato" ref_id="SGN-E295559" ref_strand="+" ref_description="SGN-E295559 [cLET-23-N21]">
      <seq>caactttggcatttcatgcaagtgtcaccaagtcctttggaaagggttctcttttgtcagtgctgagacagttttctcgtctaaagagcgataagcaagcaatctctgttggttttataggctatcccaatgttggcaagtcatcagttattaatacattgcgcacaaagaatgtttgcaaggtggctcctatcccaggagagactaaagtgtggcagtacattacactcacaaagaggatattcttgattgattgtcctggtgtagtttatcagaatcatgattccgaaacagatatagtcttgaagggcgtggtacgagtgacaaacctacctgatgcttctgaacacattagcgaagtgttgaatcgcgttaagaaggagcatcttaaaagagcttataagatagagaattgggttgacgagtatgactttcttcaacagctatgcaagtcttcaggcaaacttctgaagggaggtgaacctgactacaatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-XPPuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="3967" stop="394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3667" g_stop="3624" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3623" i_stop="3463" i_length="161">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3462" g_stop="3334" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="173" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3333" i_stop="2744" i_length="590">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2743" g_stop="2603" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="314" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2602" i_stop="1641" i_length="962">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1640" g_stop="1540" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="415" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1539" i_stop="1264" i_length="276">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1263" g_stop="1206" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="473" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1205" i_stop="718" i_length="488">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="717" g_stop="694" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="497" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E295559" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3667" e_stop="3624"/>
          <exon e_start="3462" e_stop="3334"/>
          <exon e_start="2743" e_stop="2603"/>
          <exon e_start="1640" e_stop="1540"/>
          <exon e_start="1263" e_stop="1206"/>
          <exon e_start="717" e_stop="694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAGGTATTCTTGTAGTGCCTTCTGATCTTGCCCCACCTCTGAATATAGACATACACTAAGTACCATAGTGATTTGTAAAATTATGGCTAATTGTGCATCCATGTGCTTGTGCCCCTGCGGGTAACTTTTTGTCTGTTACTTATTTTGTTTTCTTGGGCATTCAGGGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAATGTAAGTTTTCCCATATGTTCTCCTGCCTTTCCAGTCTGTTGTGATCTTCTTTGCTCATTTGTTTCTGTACTGAGACAGTTTGCAATTTGTCTCCTTGAGAATCGTCTTTTCCGTGATACTTCTTTGTTAGACATGATTGGTGAATTGCACAATTTGTTACTTCAATTTTTGCTCTTATCTTTATGAGACTCTTTACCTGATACAATTCTTCCTCGTTATCGAAAAATTGTGATTGCCATTCAAGCTGTTCCAAATTTGATTTTAGCTAATCATGTGATGCTGCTTTTAGGAAGATTAAATGCAGGATAGTGAAGAGTAAACTTGATGTTCCAGACTATATTCACGAGTATCAGATATTTATACAGCTCTAAAACTTAATTTCCTAACCTTTCACCTTCTCTGTTAATATTAAATAAAGGAAACTTGTTTTCTTGTCGGATAATGACTGTTGTTTTTCTTGTCACCTGTACTTGACGTGTAAAAAGTCAAATCTTGTGAAATGTAATCTCACTTTGAGTACTATGCTCAGACAACCACATACATTTTGATATGGTCGTGGAACTAACCTTTGCTCCTTTCCTTTGGAATAGGTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTGGTATGTGTCTTCTACTTTGCTTTATCAGGCTTTTGCTTGTGCTTGTGACTTGTCAAAGTCAAGCTATATTTCTTGGTTTATTTTGATACCTACCGCTTTATTTAAAGGACTTTGGTATAAAAAGGACTTTTAAGGCATAGGTGGCCTGATTTTACCTAGATAATCTTGCTTGCAATATTTGTGGTCCTCTAGAGAAAAATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCCTACTCGAGCTATTAAGGAGGGAGAGGAGTTTTGGGTTCCTGAACTTTAGTCCAAACTCCCTAAGAGTTGTGCTATTGTCCTGTTTCCTGTTGGATATGTAATACACCATGAACTGGAACGTACTAGTATCAATAAAGAAAGATTTATAATCTACATAGCCCTCGATTTATGTGTTATTTATCCATTGCTACTTTTTTTATGCCAATGTTGGTGACTGGAGATAACTCTCTTCAATTAATCCTGGGGACCTTTATAAAAAAATTGAAAGATTTATCTTGTTGTATAGGATATCTTCCCTTTATTACAGATTCCTTTGCCTCGTCTCAGTTGATGAAATATCTTCTTGTCTATATCACTTTGCTGTAAGCATGAGGTTCTTTGACTGACTACCTCAAAACCTCAAAATTTGGGGTTCCATTTCCAGGTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTGGTAAATTTTCTCATCATTTGATTTTATTTGTAGATTTCATCAAGTACTCAGCAAGACATTCTTCTAGTTTGTTTAGCCTGCTTCCTCGTAGATAGAAATGGGAACACATTGTAGTTGTATCTGCTTCGTCATTTGTTCTATTATATATGTACATTTGGTAAATTATCTCACCAAGTAGAATGAGAATCATGTATTCTTTCGGCAGTTTGTGTTGACACCCCCAAAATTCCATATCTAGAATCTCTGTTCTGCTTAAATGATATTTTGATATTCCAGGGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAGGTAAATTGAAAATTTATAACTTGATGATTATATTTTGTTATACTTTTCATTAGTCTCTCGGGTATGATCTGAAGTGTTTTGTGCTGTTTGTCAGCTCATATAGGACGATCACTTAAACCGGTTCCTTTTATGTTTTTTCATTAGTTCATGTAGGACAAAGTGAAGCTCACTAGACGAACACTTGGTAGTCAAAGTTAAAGTTATGTAGCAGTATTGTTGGACAAAAATAATTGAGAACTCAGTTGGCCTCTAATAAGTGTTAATTGTGAAGTAGCACTTTCAGGTTGAGAAATGATTTCCTAAATGATAGAAAAATTGTAATGTCAATTTTATATATATCTTTATTCTACAGGGATTTTCGATAAAATTTGCATATTTGGCTACAATTCTGCAATGTGCTTGACATCCTTGTACTACTTTTCTTTTAGTGCTTATGGCTGTCCAGAGAGTAGTATAGTTGGTATAAAATCTTAATTTGTGCTATTCAGGGAGGTGAACCTGACTACAATACT</genome_strand>
        <mrna_strand>CAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAG.................................................................................................................................................................GGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTG....................................................................................................................................................................................................................................................................................GGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGTGAACCTGACTACAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nlezkx/sgn_ests_tomato" ref_id="SGN-E292146" ref_strand="+" ref_description="SGN-E292146 [cLET-1-O17]">
      <seq>attccagagatgtgttcttatggtgatttgagatcaaatatcctcttgtgttcactttttataagtacttcaattttgttttcctagaagttcttattgttggcatttttttaaaatgaaattttggtcgccaatgttaatttaggctagctactaggacagcgcttctatgactggcatacataggatgatctcatatagttatgatgtcggaagcatttagtcatgaatacatttggataggggaagattggaaacaaatcaattgcaatgatgctgttgtgtggatgctggtcttccctactttggaacttcgatgatattgctctgaaagaggtcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-XPPuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="2704" stop="1764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2404" g_stop="2064" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E292146" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2404" e_stop="2064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCCT</genome_strand>
        <mrna_strand>ATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nlezkx/sgn_ests_tomato" ref_id="SGN-E372888" ref_strand="+" ref_description="SGN-E372888 [TUS-32-B23]">
      <seq>attccagagatgtgttcttatggtgatttgagatcaaatatcctcttgtgttcactttttataagtacttcaattttgttttcctagaagttcttattgttggcatttttttaaaatgaaattttggtcgccaatgttaatttaggctagctactaggacagcgcttctatgactggcatacataggatgatctcatatagttatgatgtcggaagcatttagtcatgaatacatttggataggggaagattggaaacaaatcaattgcaatgatgctgttgtgtggatgctggtcttccctactttggaacttcgatgatattgctctgaaagaggtcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-XPPuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="2704" stop="1764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2404" g_stop="2064" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E372888" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2404" e_stop="2064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCCT</genome_strand>
        <mrna_strand>ATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nlezkx/sgn_ests_tomato" ref_id="SGN-E292323" ref_strand="+" ref_description="SGN-E292323 [cLET-1-O17]">
      <seq>ggacctctttcagagcaatatcatcgaagttccaaagtagggaagaccagcatccacacaacagcatcattgcaattgatttgtttccaatcttcccctatccaaatgtattcatgactaaatgcttccgacatcataactatatgagatcatcctatgtatgccagtcatagaagcgctgtcctagtagctagcctaaattaacattggcgaccaaaatttcattttaaaaaaatgccaacaataagaacttctaggaaaacaaaattgaagtacttataaaaagtgaacacaagaggatatttgatctcaaatcaccataagaacacatctctggaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-XPPuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="+" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="1765" stop="2705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2065" g_stop="2405" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="+" ref_id="SGN-E292323" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2065" e_stop="2405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACCTCTTTCAGAGCAATATCATCGAAGTTCCAAAGTAGGGAAGACCAGCATCCACACAACAGCATCATTGCAATTGATTTGTTTCCAATCTTCCCCTATCCAAATGTATTCATGACTAAATGCTTCCGACATCATAACTATATGAGATCATCCTATGTATGCCAGTCATAGAAGCGCTGTCCTAGTAGCTAGCCTAAATTAACATTGGCGACCAAAATTTCATTTTAAAAAAATGCCAACAATAAGAACTTCTAGGAAAACAAAATTGAAGTACTTATAAAAAGTGAACACAAGAGGATATTTGATCTCAAATCACCATAAGAACACATCTCTGGAATT</genome_strand>
        <mrna_strand>GGACCTCTTTCAGAGCAATATCATCGAAGTTCCAAAGTAGGGAAGACCAGCATCCACACAACAGCATCATTGCAATTGATTTGTTTCCAATCTTCCCCTATCCAAATGTATTCATGACTAAATGCTTCCGACATCATAACTATATGAGATCATCCTATGTATGCCAGTCATAGAAGCGCTGTCCTAGTAGCTAGCCTAAATTAACATTGGCGACCAAAATTTCATTTTAAAAAAATGCCAACAATAAGAACTTCTAGGAAAACAAAATTGAAGTACTTATAAAAAGTGAACACAAGAGGATATTTGATCTCAAATCACCATAAGAACACATCTCTGGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nlezkx/sgn_ests_tomato" ref_id="SGN-E372887" ref_strand="+" ref_description="SGN-E372887 [TUS-32-B23]">
      <seq>ggacctctttcagagcaatatcatcgaagttccaaagtagggaagaccagcatccacacaacagcatcattgcaattgatttgtttccaatcttcccctatccaaatgtattcatgactaaatgcttccgacatcataactatatgagatcatcctatgtatgccagtcatagaagcgctgtcctagtagctagcctaaattaacattggcgaccaaaatttcattttaaaaaaatgccaacaataagaacttctaggaaaacaaaattgaagtacttataaaaagtgaacacaagaggatatttgatctcaaatcaccataagaacacatctctggaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-XPPuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="+" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="1765" stop="2705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2065" g_stop="2405" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="+" ref_id="SGN-E372887" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2065" e_stop="2405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACCTCTTTCAGAGCAATATCATCGAAGTTCCAAAGTAGGGAAGACCAGCATCCACACAACAGCATCATTGCAATTGATTTGTTTCCAATCTTCCCCTATCCAAATGTATTCATGACTAAATGCTTCCGACATCATAACTATATGAGATCATCCTATGTATGCCAGTCATAGAAGCGCTGTCCTAGTAGCTAGCCTAAATTAACATTGGCGACCAAAATTTCATTTTAAAAAAATGCCAACAATAAGAACTTCTAGGAAAACAAAATTGAAGTACTTATAAAAAGTGAACACAAGAGGATATTTGATCTCAAATCACCATAAGAACACATCTCTGGAATT</genome_strand>
        <mrna_strand>GGACCTCTTTCAGAGCAATATCATCGAAGTTCCAAAGTAGGGAAGACCAGCATCCACACAACAGCATCATTGCAATTGATTTGTTTCCAATCTTCCCCTATCCAAATGTATTCATGACTAAATGCTTCCGACATCATAACTATATGAGATCATCCTATGTATGCCAGTCATAGAAGCGCTGTCCTAGTAGCTAGCCTAAATTAACATTGGCGACCAAAATTTCATTTTAAAAAAATGCCAACAATAAGAACTTCTAGGAAAACAAAATTGAAGTACTTATAAAAAGTGAACACAAGAGGATATTTGATCTCAAATCACCATAAGAACACATCTCTGGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nlezkx/sgn_ests_tomato" ref_id="SGN-E245726" ref_strand="+" ref_description="SGN-E245726 [cLEF-48-I8]">
      <seq>caaacatggtgctagcacctccatggatgaaaatgctgatggattcagagatcttgttaggcacacaatgtttgagaaaggacaaagtaaacgaatttggagtgagctctacaaagtcatagactcttctgatgtcgttattcaggttcttgatgccagagacccctgtggtacaaggtgctaccatttggagaaacatttgaaagaaaattgcaagcacaaacatatggtccttttgcttaataagtgtgatttggtccctgcttgggcaacaaagggatggcttagagtgctctctagggaatatccaactttggcatttcatgcaagtgtcaccaagtcctttggaaagggttctcttttgtcagtgctgagacagttttctcgtctaaagagcgataagcaagcaatctctgttggttttataggctatcccaatgttggcaagtcatcagttattaatacattgcgcacaaagaatgtttgcaaggtggctcctatcccaggagagactaaagtgtggcagtacattacactcacaaagaggatattcttgattgattgtcctggtgtagtttatcagaatcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-XPPuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="4931" stop="2334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4631" g_stop="4487" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4486" i_stop="3991" i_length="496">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3990" g_stop="3889" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="247" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3888" i_stop="3729" i_length="160">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3728" g_stop="3624" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="352" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3623" i_stop="3463" i_length="161">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3462" g_stop="3334" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="481" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3333" i_stop="2744" i_length="590">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2743" g_stop="2634" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="591" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E245726" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4631" e_stop="4487"/>
          <exon e_start="3990" e_stop="3889"/>
          <exon e_start="3728" e_stop="3624"/>
          <exon e_start="3462" e_stop="3334"/>
          <exon e_start="2743" e_stop="2634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAGGTTTGTTTCGTGGCTTTAAACTCCTGCTATATCTAATATCTAAAATGAAGTATGTTATTTGATGTTGATGTTCTTCCAACTAAATGCTTTTCTGGTGAAAAATGCAAAAAAATTTCTCTTGTATCCAAGTGTAAAACAATCACATCTTACTTAACCAAGCATACCAGGCTCAACTTGTCTGTCCTGATTTTTTCCTTGTTGCTTATTTGGTGGGCCCATGAAGTTTCAGTTAGTGTAGAAGATTGAATGTTGTGTTTACTTAGAGAACCGTGTTATGTTGTAGAGTCTATACTTCGTAGTCTGCTCCTTAATTACAGGAGAGTTCCCCATTATTAATAAAATTGTTTACTTTATTCAAAAATCACCTGTCTGCTGTGTATGGACGGTATAATGTTCTGATCTAGTTTTCTCTGTCTAAGGAGGAAAGTATAGGATATTTTAGATGAAAGGTATACTGCTGGAAGTTGTAACTTACTGTGGTTAACCTGGATTGCAGGTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAGGTTTGCTATTATTATTAACATAGTAGACATTTTTTCTTTATTATATATATTTCTATTTCCCCTTCGGCCTCTCTCTTTGAGTTGTCTTGGCTTCTTTTTTCAGGATGTCAGTTTTAACTTCAGGATTTGTTAAAATTGATAATTTGTTCTGCCTATGTAGTGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAGGTATTCTTGTAGTGCCTTCTGATCTTGCCCCACCTCTGAATATAGACATACACTAAGTACCATAGTGATTTGTAAAATTATGGCTAATTGTGCATCCATGTGCTTGTGCCCCTGCGGGTAACTTTTTGTCTGTTACTTATTTTGTTTTCTTGGGCATTCAGGGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAATGTAAGTTTTCCCATATGTTCTCCTGCCTTTCCAGTCTGTTGTGATCTTCTTTGCTCATTTGTTTCTGTACTGAGACAGTTTGCAATTTGTCTCCTTGAGAATCGTCTTTTCCGTGATACTTCTTTGTTAGACATGATTGGTGAATTGCACAATTTGTTACTTCAATTTTTGCTCTTATCTTTATGAGACTCTTTACCTGATACAATTCTTCCTCGTTATCGAAAAATTGTGATTGCCATTCAAGCTGTTCCAAATTTGATTTTAGCTAATCATGTGATGCTGCTTTTAGGAAGATTAAATGCAGGATAGTGAAGAGTAAACTTGATGTTCCAGACTATATTCACGAGTATCAGATATTTATACAGCTCTAAAACTTAATTTCCTAACCTTTCACCTTCTCTGTTAATATTAAATAAAGGAAACTTGTTTTCTTGTCGGATAATGACTGTTGTTTTTCTTGTCACCTGTACTTGACGTGTAAAAAGTCAAATCTTGTGAAATGTAATCTCACTTTGAGTACTATGCTCAGACAACCACATACATTTTGATATGGTCGTGGAACTAACCTTTGCTCCTTTCCTTTGGAATAGGTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGA</genome_strand>
        <mrna_strand>CAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAG................................................................................................................................................................TGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAG.................................................................................................................................................................GGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nlezkx/sgn_ests_tomato" ref_id="SGN-E238176" ref_strand="+" ref_description="SGN-E238176 [cLED-22-G3]">
      <seq>gattcagagatcttgttaggcacacaatgtttgagaaaggacaaagtaaacgaatttggagtgagctctacaaagtcatagactcttctgatgtcgttattcaggttcttgatgccagagacccctgtggtacaaggtgctaccatttggagaaacatttgaaagaaaattgcaagcacaaacatatggtccttttgcttaataagtgtgatttggtccctgcttgggcaacaaagggatggcttagagtgctctctagggaatatccaactttggcatttcatgcaagtgtcaccaagtcctttggaaagggttctcttttgtcagtgctgagacagttttctcgtctaaagagcgataagcaagcaatctctgttggttttataggctatcccaatgttggcaagtcatcagttattaatacattgcgcacaaagaatgtttgcaaggtggctcctatcccaggagagactaaagtgtggcagtacattacactcacaaagaggatattcttgattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-XPPuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="4890" stop="2364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4590" g_stop="4487" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4486" i_stop="3991" i_length="496">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3990" g_stop="3889" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="206" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3888" i_stop="3729" i_length="160">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3728" g_stop="3624" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="311" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3623" i_stop="3463" i_length="161">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3462" g_stop="3334" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="440" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3333" i_stop="2744" i_length="590">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2743" g_stop="2664" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="520" r_length="80" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E238176" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4590" e_stop="4487"/>
          <exon e_start="3990" e_stop="3889"/>
          <exon e_start="3728" e_stop="3624"/>
          <exon e_start="3462" e_stop="3334"/>
          <exon e_start="2743" e_stop="2664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAGGTTTGTTTCGTGGCTTTAAACTCCTGCTATATCTAATATCTAAAATGAAGTATGTTATTTGATGTTGATGTTCTTCCAACTAAATGCTTTTCTGGTGAAAAATGCAAAAAAATTTCTCTTGTATCCAAGTGTAAAACAATCACATCTTACTTAACCAAGCATACCAGGCTCAACTTGTCTGTCCTGATTTTTTCCTTGTTGCTTATTTGGTGGGCCCATGAAGTTTCAGTTAGTGTAGAAGATTGAATGTTGTGTTTACTTAGAGAACCGTGTTATGTTGTAGAGTCTATACTTCGTAGTCTGCTCCTTAATTACAGGAGAGTTCCCCATTATTAATAAAATTGTTTACTTTATTCAAAAATCACCTGTCTGCTGTGTATGGACGGTATAATGTTCTGATCTAGTTTTCTCTGTCTAAGGAGGAAAGTATAGGATATTTTAGATGAAAGGTATACTGCTGGAAGTTGTAACTTACTGTGGTTAACCTGGATTGCAGGTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAGGTTTGCTATTATTATTAACATAGTAGACATTTTTTCTTTATTATATATATTTCTATTTCCCCTTCGGCCTCTCTCTTTGAGTTGTCTTGGCTTCTTTTTTCAGGATGTCAGTTTTAACTTCAGGATTTGTTAAAATTGATAATTTGTTCTGCCTATGTAGTGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAGGTATTCTTGTAGTGCCTTCTGATCTTGCCCCACCTCTGAATATAGACATACACTAAGTACCATAGTGATTTGTAAAATTATGGCTAATTGTGCATCCATGTGCTTGTGCCCCTGCGGGTAACTTTTTGTCTGTTACTTATTTTGTTTTCTTGGGCATTCAGGGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAATGTAAGTTTTCCCATATGTTCTCCTGCCTTTCCAGTCTGTTGTGATCTTCTTTGCTCATTTGTTTCTGTACTGAGACAGTTTGCAATTTGTCTCCTTGAGAATCGTCTTTTCCGTGATACTTCTTTGTTAGACATGATTGGTGAATTGCACAATTTGTTACTTCAATTTTTGCTCTTATCTTTATGAGACTCTTTACCTGATACAATTCTTCCTCGTTATCGAAAAATTGTGATTGCCATTCAAGCTGTTCCAAATTTGATTTTAGCTAATCATGTGATGCTGCTTTTAGGAAGATTAAATGCAGGATAGTGAAGAGTAAACTTGATGTTCCAGACTATATTCACGAGTATCAGATATTTATACAGCTCTAAAACTTAATTTCCTAACCTTTCACCTTCTCTGTTAATATTAAATAAAGGAAACTTGTTTTCTTGTCGGATAATGACTGTTGTTTTTCTTGTCACCTGTACTTGACGTGTAAAAAGTCAAATCTTGTGAAATGTAATCTCACTTTGAGTACTATGCTCAGACAACCACATACATTTTGATATGGTCGTGGAACTAACCTTTGCTCCTTTCCTTTGGAATAGGTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGA</genome_strand>
        <mrna_strand>GATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAG................................................................................................................................................................TGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAG.................................................................................................................................................................GGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nlezkx/sgn_ests_tomato" ref_id="SGN-E249079" ref_strand="+" ref_description="SGN-E249079 [cLEF-49-F23]">
      <seq>ttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatgctgatggattcagagatcttgttaggcacacaatgtttgagaaaggacaaagtaaacgaatttggagtgagctctacaaagtcatagactcttctgatgtcgttattcaggttcttgatgccagagacccctgtggtacaaggtgctaccatttggagaaacatttgaaagaaaattgcaagcacaaacatatggtccttttgcttaataagtgtgatttggtccctgcttgggcaacaaagggatggcttagagtgctctctaaggaatatccaactttggcatttcatgcaagtgtcaccaagtcctttggaaagggttctcttttgtcagtgctgagacagttttctcgtctaaagagcgataagcaagcaatctctgttggttttataggctatcccaatgttggcaagtcatcagttattaatacattgcgcacaaagaatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-XPPuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="4959" stop="3032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4775" g_stop="4761" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4644" g_stop="4487" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="173" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4486" i_stop="3991" i_length="496">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3990" g_stop="3889" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="275" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3888" i_stop="3729" i_length="160">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3728" g_stop="3624" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="380" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3623" i_stop="3463" i_length="161">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3462" g_stop="3334" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="509" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E249079" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4775" e_stop="4761"/>
          <exon e_start="4644" e_stop="4487"/>
          <exon e_start="3990" e_stop="3889"/>
          <exon e_start="3728" e_stop="3624"/>
          <exon e_start="3462" e_stop="3334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAGGTTTGTTTCGTGGCTTTAAACTCCTGCTATATCTAATATCTAAAATGAAGTATGTTATTTGATGTTGATGTTCTTCCAACTAAATGCTTTTCTGGTGAAAAATGCAAAAAAATTTCTCTTGTATCCAAGTGTAAAACAATCACATCTTACTTAACCAAGCATACCAGGCTCAACTTGTCTGTCCTGATTTTTTCCTTGTTGCTTATTTGGTGGGCCCATGAAGTTTCAGTTAGTGTAGAAGATTGAATGTTGTGTTTACTTAGAGAACCGTGTTATGTTGTAGAGTCTATACTTCGTAGTCTGCTCCTTAATTACAGGAGAGTTCCCCATTATTAATAAAATTGTTTACTTTATTCAAAAATCACCTGTCTGCTGTGTATGGACGGTATAATGTTCTGATCTAGTTTTCTCTGTCTAAGGAGGAAAGTATAGGATATTTTAGATGAAAGGTATACTGCTGGAAGTTGTAACTTACTGTGGTTAACCTGGATTGCAGGTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAGGTTTGCTATTATTATTAACATAGTAGACATTTTTTCTTTATTATATATATTTCTATTTCCCCTTCGGCCTCTCTCTTTGAGTTGTCTTGGCTTCTTTTTTCAGGATGTCAGTTTTAACTTCAGGATTTGTTAAAATTGATAATTTGTTCTGCCTATGTAGTGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAGGTATTCTTGTAGTGCCTTCTGATCTTGCCCCACCTCTGAATATAGACATACACTAAGTACCATAGTGATTTGTAAAATTATGGCTAATTGTGCATCCATGTGCTTGTGCCCCTGCGGGTAACTTTTTGTCTGTTACTTATTTTGTTTTCTTGGGCATTCAGGGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAAT</genome_strand>
        <mrna_strand>TTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAG................................................................................................................................................................TGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAAGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAG.................................................................................................................................................................GGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nlezkx/sgn_ests_tomato" ref_id="SGN-E702113" ref_strand="+" ref_description="SGN-E702113 [FA17DD04]">
      <seq>gggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaatgagccattcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatgctgatggattcagagatcttgttaggcacacaatgtttgagaaaggacaaagtaaacgaatttggagtgagctctacaaagtcatagactcttctgatgtcgttattcaggttcttgatgccagagacccctgtggtacaaggtgctaccatttggagaaacatttgaaagaaaattgcaagcacaaacatatggtccttttgcttaataagtgtgatttggtccctgcttgggcaacaaagggatggcttagagtgctctctaggggaatatccaactttggcatttcatgcaagtgtcaccaagtcctttggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-XPPuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6130" stop="3325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5830" g_stop="5634" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="331" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="461" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4644" g_stop="4487" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="619" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4486" i_stop="3991" i_length="496">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3990" g_stop="3889" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="721" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3888" i_stop="3729" i_length="160">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3728" g_stop="3625" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="722" r_stop="826" r_length="105" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E702113" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5830" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4487"/>
          <exon e_start="3990" e_stop="3889"/>
          <exon e_start="3728" e_stop="3625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAGGTTTGTTTCGTGGCTTTAAACTCCTGCTATATCTAATATCTAAAATGAAGTATGTTATTTGATGTTGATGTTCTTCCAACTAAATGCTTTTCTGGTGAAAAATGCAAAAAAATTTCTCTTGTATCCAAGTGTAAAACAATCACATCTTACTTAACCAAGCATACCAGGCTCAACTTGTCTGTCCTGATTTTTTCCTTGTTGCTTATTTGGTGGGCCCATGAAGTTTCAGTTAGTGTAGAAGATTGAATGTTGTGTTTACTTAGAGAACCGTGTTATGTTGTAGAGTCTATACTTCGTAGTCTGCTCCTTAATTACAGGAGAGTTCCCCATTATTAATAAAATTGTTTACTTTATTCAAAAATCACCTGTCTGCTGTGTATGGACGGTATAATGTTCTGATCTAGTTTTCTCTGTCTAAGGAGGAAAGTATAGGATATTTTAGATGAAAGGTATACTGCTGGAAGTTGTAACTTACTGTGGTTAACCTGGATTGCAGGTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAGGTTTGCTATTATTATTAACATAGTAGACATTTTTTCTTTATTATATATATTTCTATTTCCCCTTCGGCCTCTCTCTTTGAGTTGTCTTGGCTTCTTTTTTCAGGATGTCAGTTTTAACTTCAGGATTTGTTAAAATTGATAATTTGTTCTGCCTATGTAGTGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTA-GGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAA</genome_strand>
        <mrna_strand>GGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAATGAGCCATTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAG................................................................................................................................................................TGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nlezkx/sgn_ests_tomato" ref_id="SGN-E721282" ref_strand="+" ref_description="SGN-E721282 [FC13BD01]">
      <seq>ggtggagtgtatactccaaaccggcctagacgactgaggtattaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaatgagccattcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatgctgatggattcagagatcttgttaggcacacaatgtttgagaaaggacaaagtaaacgaatttggagtgagctctacaaagtcatagactcttctgatgtcgttattcaggttcttgatgccagagacccctgtggtacaaggtgctaccatttggagaaacatttgaaagaaaattttgcagcacaacatatggtccttttgcttaataagtgtgatttggtccctgcttgggcaacaagggatggcttanagtgctctctagggaatatccaactttggcatttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-XPPuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6258" stop="3352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5959" g_stop="5634" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="460" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="590" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4644" g_stop="4487" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="748" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4486" i_stop="3991" i_length="496">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3990" g_stop="3889" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="749" r_stop="850" r_length="102" r_score="0.941"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3888" i_stop="3729" i_length="160">
            <donor d_prob="0.927" d_score="0.88"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3728" g_stop="3652" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="851" r_stop="926" r_length="76" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E721282" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>927</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5959" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4487"/>
          <exon e_start="3990" e_stop="3889"/>
          <exon e_start="3728" e_stop="3652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGGAGTGTATACTACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAGGTTTGTTTCGTGGCTTTAAACTCCTGCTATATCTAATATCTAAAATGAAGTATGTTATTTGATGTTGATGTTCTTCCAACTAAATGCTTTTCTGGTGAAAAATGCAAAAAAATTTCTCTTGTATCCAAGTGTAAAACAATCACATCTTACTTAACCAAGCATACCAGGCTCAACTTGTCTGTCCTGATTTTTTCCTTGTTGCTTATTTGGTGGGCCCATGAAGTTTCAGTTAGTGTAGAAGATTGAATGTTGTGTTTACTTAGAGAACCGTGTTATGTTGTAGAGTCTATACTTCGTAGTCTGCTCCTTAATTACAGGAGAGTTCCCCATTATTAATAAAATTGTTTACTTTATTCAAAAATCACCTGTCTGCTGTGTATGGACGGTATAATGTTCTGATCTAGTTTTCTCTGTCTAAGGAGGAAAGTATAGGATATTTTAGATGAAAGGTATACTGCTGGAAGTTGTAACTTACTGTGGTTAACCTGGATTGCAGGTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAA-TTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAGGTTTGCTATTATTATTAACATAGTAGACATTTTTTCTTTATTATATATATTTCTATTTCCCCTTCGGCCTCTCTCTTTGAGTTGTCTTGGCTTCTTTTTTCAGGATGTCAGTTTTAACTTCAGGATTTGTTAAAATTGATAATTTGTTCTGCCTATGTAGTGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCA</genome_strand>
        <mrna_strand>GGTGGAGTGTATACTCCAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAATGAGCCATTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTTTGCAGCAC-AACATATGGTCCTTTTGCTTAATAAG................................................................................................................................................................TGTGATTTGGTCCCTGCTTGGGCAAC-AAGGGATGGCTTANAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nlezkx/sgn_ests_tomato" ref_id="SGN-E703973" ref_strand="+" ref_description="SGN-E703973 [FA23AA06]">
      <seq>cggtatactacaaaccggcctagacgactgaggtattaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaatgagccattcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatgctgatggattcagagatcttgttaggcacacaatgtttgagaaaggacaaagtaaacgaatttggagtgagctctacaaagtcataaactcttctgatgtcgttattcaagttcttgatgccagagacccctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-XPPuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6251" stop="3665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5953" g_stop="5634" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="454" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="584" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4644" g_stop="4487" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="742" r_length="158" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4486" i_stop="3991" i_length="496">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3990" g_stop="3965" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="743" r_stop="768" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E703973" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5953" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4487"/>
          <exon e_start="3990" e_stop="3965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTATACTACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAGGTTTGTTTCGTGGCTTTAAACTCCTGCTATATCTAATATCTAAAATGAAGTATGTTATTTGATGTTGATGTTCTTCCAACTAAATGCTTTTCTGGTGAAAAATGCAAAAAAATTTCTCTTGTATCCAAGTGTAAAACAATCACATCTTACTTAACCAAGCATACCAGGCTCAACTTGTCTGTCCTGATTTTTTCCTTGTTGCTTATTTGGTGGGCCCATGAAGTTTCAGTTAGTGTAGAAGATTGAATGTTGTGTTTACTTAGAGAACCGTGTTATGTTGTAGAGTCTATACTTCGTAGTCTGCTCCTTAATTACAGGAGAGTTCCCCATTATTAATAAAATTGTTTACTTTATTCAAAAATCACCTGTCTGCTGTGTATGGACGGTATAATGTTCTGATCTAGTTTTCTCTGTCTAAGGAGGAAAGTATAGGATATTTTAGATGAAAGGTATACTGCTGGAAGTTGTAACTTACTGTGGTTAACCTGGATTGCAGGTTCTTGATGCCAGAGACCCCTGTGG</genome_strand>
        <mrna_strand>CGGTATACTACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAATGAGCCATTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAAACTCTTCTGATGTCGTTATTCAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGATGCCAGAGACCCCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nlezkx/sgn_ests_tomato" ref_id="SGN-E332857" ref_strand="+" ref_description="SGN-E332857 [cTOD-19-A19]">
      <seq>caaaccggcctagacgactgaggtattaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatctgcttgacaatgagccatttgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatgggatgaaatgctgatggattcagagatcttgttaggcacacaatgtttgagnaaagacnaagtaaacgaatttggagtgagctctancaagtcatagactcttctgatgtcgttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-XPPuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6243" stop="4190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5943" g_stop="5634" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="444" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="574" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4644" g_stop="4490" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="729" r_length="155" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E332857" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5943" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCAT-GGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATT</genome_strand>
        <mrna_strand>CAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGGATG-AAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGNAAAGACNAAGTAAACGAATTTGGAGTGAGCTCTANCAAGTCATAGACTCTTCTGATGTCGTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nlezkx/sgn_ests_tomato" ref_id="SGN-E206404" ref_strand="+" ref_description="SGN-E206404 [cLEC-23-N16]">
      <seq>ttaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatctgcttgacaatgagccatttgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatgctgatggattcagagatcttgttaggcacacaatgtttgagaaaggacaaagtaaacgaatttggagtgagctctacaaagtcatagactcttctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-XPPuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="5999" stop="4198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5699" g_stop="5634" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="200" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="330" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4644" g_stop="4498" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="477" r_length="147" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E206404" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5699" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATG</genome_strand>
        <mrna_strand>TTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nlezkx/sgn_ests_tomato" ref_id="SGN-E267916" ref_strand="+" ref_description="SGN-E267916 [cLEI-12-D22]">
      <seq>tacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtgggcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcgagttaaagttcatctgcttgacaatgagccatttgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattgtgaagacaaacatggtgctagcacctccatggatgaaaatgctgatggattcagagatcttgttaggcacacaatgtttgagaaaggacaaagtaaacgaatttggagtgagctctacaaagtcatagactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-XPPuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6039" stop="4206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5739" g_stop="5634" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="240" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="370" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4644" g_stop="4506" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="509" r_length="139" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E267916" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5739" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTC</genome_strand>
        <mrna_strand>TACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGGCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CGAGTTAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTGTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nlezkx/sgn_ests_tomato" ref_id="SGN-E313744" ref_strand="+" ref_description="SGN-E313744 [cTOA-17-O14]">
      <seq>tccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatctgcttgacaatgagccatttgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatgctgatggattcagagatcttgttaggcacacaatgtttgagaaaggacaaagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-XPPuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6105" stop="4243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5805" g_stop="5634" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="306" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="436" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4644" g_stop="4543" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="538" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E313744" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5805" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTA</genome_strand>
        <mrna_strand>TCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nlezkx/sgn_ests_tomato" ref_id="SGN-E320412" ref_strand="+" ref_description="SGN-E320412 [cTOB-22-O22]">
      <seq>ccggcctagacgactgaggtattaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatctgcttgacaatgagccatttgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatgctgatggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-XPPuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6239" stop="4287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5939" g_stop="5634" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="440" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="570" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4644" g_stop="4587" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="628" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E320412" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5939" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATT</genome_strand>
        <mrna_strand>CCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nlezkx/sgn_ests_tomato" ref_id="SGN-E205947" ref_strand="+" ref_description="SGN-E205947 [cLEC-20-K17]">
      <seq>aaaccggcctagacgactgaggtattaacgttaatcgccgggtcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatctgcttgacaatgagccatttgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttaatgaagaaggttgatgtgtctcatgatgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-XPPuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6242" stop="4457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5942" g_stop="5634" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="443" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="573" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4644" g_stop="4638" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="580" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E205947" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5942" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTT</genome_strand>
        <mrna_strand>AAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGGGTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAATGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nlezkx/sgn_ests_tomato" ref_id="SGN-E249811" ref_strand="+" ref_description="SGN-E249811 [cLEF-57-J18]">
      <seq>aaccggcctagacgactgaggtattaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatctgcttgacaatgagccatttgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-XPPuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6241" stop="4508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5941" g_stop="5634" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="442" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4808" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="525" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E249811" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5941" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTAT</genome_strand>
        <mrna_strand>AACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nlezkx/sgn_ests_tomato" ref_id="SGN-E247188" ref_strand="+" ref_description="SGN-E247188 [cLEF-46-P18]">
      <seq>cggcctagacgactgaggtattaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatctgcttgacaatgagccatttgctgatgcttttggaccaaaaacaaagaggaaacgccccaaactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-XPPuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6238" stop="4509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5938" g_stop="5634" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="439" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4809" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="521" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E247188" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5938" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTA</genome_strand>
        <mrna_strand>CGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nlezkx/sgn_ests_tomato" ref_id="SGN-E264501" ref_strand="+" ref_description="SGN-E264501 [cLEG-67-K1]">
      <seq>cggcctagacgactgaggtattaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtccctttttaatgatcatcagaagcaagtaaaagttcatctgcttgacaatgagccatttgctgatgcttttggaccaaaacaaagaggaaacgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-XPPuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6238" stop="4517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5938" g_stop="5634" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="439" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4817" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="512" r_length="73" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E264501" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5938" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCC</genome_strand>
        <mrna_strand>CGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTTAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACC-AAAACAAAGAGGAAACGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nlezkx/sgn_ests_tomato" ref_id="SGN-E263993" ref_strand="+" ref_description="SGN-E263993 [cLEG-64-N11]">
      <seq>cggcctagacgactgaggtattaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatctgcttgacaatgagccatttgctgatgcttttngacccaaaaccaagaggaaacgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-XPPuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6238" stop="4519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5938" g_stop="5634" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="439" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4819" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="511" r_length="72" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E263993" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5938" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGC</genome_strand>
        <mrna_strand>CGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTNGACCCAAAACCAAGAGGAAACGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nlezkx/sgn_ests_tomato" ref_id="SGN-E301598" ref_strand="+" ref_description="SGN-E301598 [cLEW-23-L14]">
      <seq>accggctctagacgactgaggtattaacggggatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatctgcttgacaatgagccatttgctgatgctttttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-XPPuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6240" stop="4540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5940" g_stop="5634" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="442" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4840" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="494" r_length="52" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E301598" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5940" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGGC-CTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGC-TTTTGGA</genome_strand>
        <mrna_strand>ACCGGCTCTAGACGACTGAGGTATTAACGGGGATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nlezkx/sgn_ests_tomato" ref_id="SGN-E300966" ref_strand="+" ref_description="SGN-E300966 [cLEW-8-N11]">
      <seq>tggagtgtgtactacaaaccggcctagacgactgaggtattaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatctgcttgacaatgagccatttgctgatgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-XPPuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6257" stop="4544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5957" g_stop="5634" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="458" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4844" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="505" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E300966" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5957" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGTGTATACTACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTT</genome_strand>
        <mrna_strand>TGGAGTGTGTACTACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nlezkx/sgn_ests_tomato" ref_id="SGN-E269760" ref_strand="+" ref_description="SGN-E269760 [cLEM-17-H8]">
      <seq>acaaaccggcctagacgactgaggtattaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaaatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-XPPuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6244" stop="4865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5944" g_stop="5634" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5165" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="437" r_length="126" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E269760" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5944" e_stop="5634"/>
          <exon e_start="5289" e_stop="5165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTT-AAATGAT</genome_strand>
        <mrna_strand>ACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAAATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nlezkx/sgn_ests_tomato" ref_id="SGN-E286374" ref_strand="+" ref_description="SGN-E286374 [cLES-11-H9]">
      <seq>cggcctagacgactgaggtattaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaatacccagccga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-XPPuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6238" stop="5424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5938" g_stop="5724" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E286374" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>215</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5938" e_stop="5724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGA</genome_strand>
        <mrna_strand>CGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCCAGCCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nlezkx/sgn_ests_tomato" ref_id="SGN-E263158" ref_strand="+" ref_description="SGN-E263158 [cLEG-62-C10]">
      <seq>caaggacccctcaactcaattttcattcatagatccgatatttgctcaaatttgtgtttataaagttcctatctttgtngggttttggagttttttcttgtaatttggtagaaaaagagtttaattttgttttgtttgttcaagtttgtgttttggggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-XPPuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="+" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="14720" stop="15479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15020" g_stop="15179" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="+" ref_id="SGN-E263158" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>160</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15020" e_stop="15179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGACCCCTCAACTCAATTTTCATTCATAGATCCGATATTTGCTCAAATTTGTGTTTATAAAGTTCCTATCTTTGTGGGGTTTTGGAGTTTTTTCTTGTAATTTGGTAGAAAAAGAGTTTAATTTTGTTTTGTTTGTTCAAGTTTGTGTTTTGGGGTT</genome_strand>
        <mrna_strand>CAAGGACCCCTCAACTCAATTTTCATTCATAGATCCGATATTTGCTCAAATTTGTGTTTATAAAGTTCCTATCTTTGTNGGGTTTTGGAGTTTTTTCTTGTAATTTGGTAGAAAAAGAGTTTAATTTTGTTTTGTTTGTTCAAGTTTGTGTTTTGGGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nlezkx/sgn_ests_tomato" ref_id="SGN-E542728" ref_strand="+" ref_description="SGN-E542728 [TUS-64-C21]">
      <seq>attttcattcatagatccgatatttgctcaaatttgtgtttataaagttcctatctttgtggggttttggagttttttcttgtaatttggtagaaaaagagtttaattttgttttgtttgttcaagtttgtgttttggggttgttgtttcttgatgatttatttcgacttagattataagatttccccaccaagtccttcattttcttattcaatttcatcaaattttcttacatctgatattttcttgataaagtgtgttaattgtttccattttcgtataaaagattgtttttgtgaagggaaaatgggggatcgtttgaggtcaactttaatggaggatttgccagtacatttgattcttgaaatattgatgtgcggtcgattagctgttattgatttaataagtttagagctaacttcaaggacttttaggggaacacatggtttgtttcctaaaaagttcaagtctttggtagattatgctgcttttcagctttgtggattgagttcaatctatgcttctttgcattgtaatgctcaggaagagctgttgacgcgatgtaacggcaattggaagcgtcttttgaggttcttgatggctgtggaacagtcctctgatatggttgaaacttctgcaggcaatatgcaaataaggagtggcaggtatcacacactgctaatcaatgattcagcagcatactcttgtggttccagtttatgcggcgtccttggtcatgggcctgaaacaactcagtgtgtggaatttactcgaattagctttcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-XPPuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="+" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="14738" stop="16661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15038" g_stop="15682" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15683" i_stop="16219" i_length="537">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16220" g_stop="16361" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="787" r_length="142" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="+" ref_id="SGN-E542728" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15038" e_stop="15682"/>
          <exon e_start="16220" e_stop="16361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCATTCATAGATCCGATATTTGCTCAAATTTGTGTTTATAAAGTTCCTATCTTTGTGGGGTTTTGGAGTTTTTTCTTGTAATTTGGTAGAAAAAGAGTTTAATTTTGTTTTGTTTGTTCAAGTTTGTGTTTTGGGGTTGTTGTTTCTTGATGATTTATTTCGACTTAGATTATAAGATTTCCCCACCAAGTCCTTCATTTTCTTATTCAATTTCATCAAATTTTCTTACATCTGATATTTTCTTGATAAAGTGTGTTAATTGTTTCCATTTTCGTATAAAAGATTGTTTTTGTGAAGGGAAAATGGGGGATCGTTTGAGGTCAACTTTAATGGAGGATTTGCCAGTACATTTGATTCTTGAAATATTGATGTGCGGTCGATTAGCTGTTATTGATTTAATAAGTTTAGAGCTAACTTCAAGGACTTTTAGGGGAACACATGGTTTGTTTCCTAAAAAGTTCAAGTCTTTGGTAGATTATGCTGCTTTTCAGCTTTGTGGATTGAGTTCAATCTATGCTTCTTTGCATTGTAATGCTCAGGAAGAGCTGTTGACGCGATGTAACGGCAATTGGAAGCGTCTTTTGAGGTTCTTGATGGCTGTGGAACAGTCCTCTGATATGGTTGAAACTTCTGCAGGCAATGTACTATTTCTTTGGAAAACTTGTTATTCGTTTATCAATGTTTACTTTGTTTGGTTGATTGCTATTTTTAGGACTAATAATATATGGTCGAAATGTTACTTATCAAATAGATGGATGAAATGTTTTCAGACACTATTTTTGTTGTTGTCAGTCAGATAGGGCCAAAAATGACACTTCTCGACCCCTTTTCGGCTTCTTCGTGTATTTACCTTATTGTATTTTGAACTCCTTAGTGAAAATTTGGACTCTTCAACTGGATGGAGCGCGTGATTCCTCTGCTTCACATATAGCAGTAGGTACTAGGCTATCTTTTTTTGTTTGGTTAAGGAATTGTATGTAAGGTTTAGTGAATTATTTAGTATTGCAATGAAATGGGACCAAATAGAATGGAATGGATAACGGTTTTATGATCGAGGTTTAGTTGCTGATTGATTTCTACCTTAATATTTCTAGATTTTAGTTACTCGCTTCTACTAGAATAGTCTGCAGCTAGGACTTCATCTTTTGTTATTACTTACTGTAAAAAGTTCTTGGCAGATGCAAATAAGGAGTGGCAGGTATCACACACTGCTAATCAATGATTCAGCAGCATACTCTTGTGGTTCCAGTTTATGCGGCGTCCTTGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTG</genome_strand>
        <mrna_strand>ATTTTCATTCATAGATCCGATATTTGCTCAAATTTGTGTTTATAAAGTTCCTATCTTTGTGGGGTTTTGGAGTTTTTTCTTGTAATTTGGTAGAAAAAGAGTTTAATTTTGTTTTGTTTGTTCAAGTTTGTGTTTTGGGGTTGTTGTTTCTTGATGATTTATTTCGACTTAGATTATAAGATTTCCCCACCAAGTCCTTCATTTTCTTATTCAATTTCATCAAATTTTCTTACATCTGATATTTTCTTGATAAAGTGTGTTAATTGTTTCCATTTTCGTATAAAAGATTGTTTTTGTGAAGGGAAAATGGGGGATCGTTTGAGGTCAACTTTAATGGAGGATTTGCCAGTACATTTGATTCTTGAAATATTGATGTGCGGTCGATTAGCTGTTATTGATTTAATAAGTTTAGAGCTAACTTCAAGGACTTTTAGGGGAACACATGGTTTGTTTCCTAAAAAGTTCAAGTCTTTGGTAGATTATGCTGCTTTTCAGCTTTGTGGATTGAGTTCAATCTATGCTTCTTTGCATTGTAATGCTCAGGAAGAGCTGTTGACGCGATGTAACGGCAATTGGAAGCGTCTTTTGAGGTTCTTGATGGCTGTGGAACAGTCCTCTGATATGGTTGAAACTTCTGCAGGCAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAAATAAGGAGTGGCAGGTATCACACACTGCTAATCAATGATTCAGCAGCATACTCTTGTGGTTCCAGTTTATGCGGCGTCCTTGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nlezkx/sgn_ests_tomato" ref_id="SGN-E301706" ref_strand="+" ref_description="SGN-E301706 [cLEW-23-P24]">
      <seq>ttttcattcatagatccgatatttgctcaaatttgtgtttataaagttcctatctttgtggggttttggagttttttcttgtaatttggtagaaaaagagtttaattttgttttgtttgttcaagtttgtgttttggggttgttgtttcttgatgatttatttcgacttagattataagatttccccaccaagtccttcattttcttattcaatttcatcaaattttcttacatctgatattttcttgataaagtgtgttaattgtttccattttcgtataaaagattgtttttgtgaatggaaaatgggggatcgtttgaggtcaactttaatggaggatttgccagttcatttgattcttgaaatattgatgtgcggtcgattagctgttattgattttataagtttagagctaacttcaaagacttttaagggaacacatggtttggttcctaaaaagttcaagtctttggtagattatgctgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-XPPuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="+" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="14739" stop="15828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15039" g_stop="15528" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="+" ref_id="SGN-E301706" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15039" e_stop="15528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCATTCATAGATCCGATATTTGCTCAAATTTGTGTTTATAAAGTTCCTATCTTTGTGGGGTTTTGGAGTTTTTTCTTGTAATTTGGTAGAAAAAGAGTTTAATTTTGTTTTGTTTGTTCAAGTTTGTGTTTTGGGGTTGTTGTTTCTTGATGATTTATTTCGACTTAGATTATAAGATTTCCCCACCAAGTCCTTCATTTTCTTATTCAATTTCATCAAATTTTCTTACATCTGATATTTTCTTGATAAAGTGTGTTAATTGTTTCCATTTTCGTATAAAAGATTGTTTTTGTGAAGGGAAAATGGGGGATCGTTTGAGGTCAACTTTAATGGAGGATTTGCCAGTACATTTGATTCTTGAAATATTGATGTGCGGTCGATTAGCTGTTATTGATTTAATAAGTTTAGAGCTAACTTCAAGGACTTTTAGGGGAACACATGGTTTGTTTCCTAAAAAGTTCAAGTCTTTGGTAGATTATGCTGCTTT</genome_strand>
        <mrna_strand>TTTTCATTCATAGATCCGATATTTGCTCAAATTTGTGTTTATAAAGTTCCTATCTTTGTGGGGTTTTGGAGTTTTTTCTTGTAATTTGGTAGAAAAAGAGTTTAATTTTGTTTTGTTTGTTCAAGTTTGTGTTTTGGGGTTGTTGTTTCTTGATGATTTATTTCGACTTAGATTATAAGATTTCCCCACCAAGTCCTTCATTTTCTTATTCAATTTCATCAAATTTTCTTACATCTGATATTTTCTTGATAAAGTGTGTTAATTGTTTCCATTTTCGTATAAAAGATTGTTTTTGTGAATGGAAAATGGGGGATCGTTTGAGGTCAACTTTAATGGAGGATTTGCCAGTTCATTTGATTCTTGAAATATTGATGTGCGGTCGATTAGCTGTTATTGATTTTATAAGTTTAGAGCTAACTTCAAAGACTTTTAAGGGAACACATGGTTTGGTTCCTAAAAAGTTCAAGTCTTTGGTAGATTATGCTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nlezkx/sgn_ests_tomato" ref_id="SGN-E242253" ref_strand="+" ref_description="SGN-E242253 [cLED-37-H20]">
      <seq>tcaatctatgcttctttgcattgtaatgctcaggaagagctgttgacgcgatgtaacggcaattggaagcgtcttttgaggttcttgatggctgtggaacagtcctctgatatggttgaaacttctgcaggcaatatgcaaataaggagtggcaggtatcacacactgctaatcaatgattcagcagcatactcttgtggttccagtttatgcggcgtccttggtcatgggcctgaaacaactcagtgtgtggaatttactcgaattagctttcctgttcccgtacaagttgcgcaagtttcagcttctcataatcatgctgcttttgtcacagggtctggacaggtgttcacatgtggagataactcatcattctgttgtgggcatagagacactggacgcccaatcttcaggccaagaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-XPPuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="+" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="15248" stop="17627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15548" g_stop="15682" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15683" i_stop="16219" i_length="537">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16220" g_stop="16429" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="345" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16430" i_stop="17249" i_length="820">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17250" g_stop="17327" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="423" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="+" ref_id="SGN-E242253" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15548" e_stop="15682"/>
          <exon e_start="16220" e_stop="16429"/>
          <exon e_start="17250" e_stop="17327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATCTATGCTTCTTTGCATTGTAATGCTCAGGAAGAGCTGTTGACGCGATGTAACGGCAATTGGAAGCGTCTTTTGAGGTTCTTGATGGCTGTGGAACAGTCCTCTGATATGGTTGAAACTTCTGCAGGCAATGTACTATTTCTTTGGAAAACTTGTTATTCGTTTATCAATGTTTACTTTGTTTGGTTGATTGCTATTTTTAGGACTAATAATATATGGTCGAAATGTTACTTATCAAATAGATGGATGAAATGTTTTCAGACACTATTTTTGTTGTTGTCAGTCAGATAGGGCCAAAAATGACACTTCTCGACCCCTTTTCGGCTTCTTCGTGTATTTACCTTATTGTATTTTGAACTCCTTAGTGAAAATTTGGACTCTTCAACTGGATGGAGCGCGTGATTCCTCTGCTTCACATATAGCAGTAGGTACTAGGCTATCTTTTTTTGTTTGGTTAAGGAATTGTATGTAAGGTTTAGTGAATTATTTAGTATTGCAATGAAATGGGACCAAATAGAATGGAATGGATAACGGTTTTATGATCGAGGTTTAGTTGCTGATTGATTTCTACCTTAATATTTCTAGATTTTAGTTACTCGCTTCTACTAGAATAGTCTGCAGCTAGGACTTCATCTTTTGTTATTACTTACTGTAAAAAGTTCTTGGCAGATGCAAATAAGGAGTGGCAGGTATCACACACTGCTAATCAATGATTCAGCAGCATACTCTTGTGGTTCCAGTTTATGCGGCGTCCTTGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTGTTCCCGTACAAGTTGCGCAAGTTTCAGCTTCTCATAATCATGCTGCTTTTGTCACAGGGTCTGGACAGGTTTGGCAATCGGCGTATATTATCAACTACTCTCATTTTTATTACAGTAATTTACCTTTTACGTGCACTTTGTTTTTTGCATGCATGATGTGGAAATCCTCGTTCTGTTGAGGAGTAAAGTAAAGAAGGTGAAAGAGGAAGAATGAAAATGGAGACAAGCAATCCAATCACATTTTCGTTTTTTTGGGAAATTATTTTAGGAGAGGTTCCTTTGGGAGACTGATACTAATATTGTTGAAATATATATTGACTTTGAAAAATGCAAGAACTGCCACACCATGCCACTCTGCAAAAAATAATTCTTACTATTTTAGTATGAGTTGGACCTAAAACTTACCGGCATGGTGTGGTCAATAAAATGGGGCTAACCTTAGAGACTATTAACAAAAAATACTCGGTGAATTCTTCCTATTTGCTTAAGCTTTAGTATACAATGTTAGTCGATACTTCTATGTTTCTATCTAAGTGCTGATCAAATACTTCTGCTCACTTTTTCCTATCCCTTCTGGGGAAAATCAGTCATCATTCTGCCAATTTGTAATGGCTAGTGCTACTGCAATAAAATAAGATAGAAAAAAAATTTATATTTCGAGCAGATTGATGCACCTTACGATGAGAGAGCCTCTCAAGTTTTGTACCGCTTAGACATATCCCTTACGAAAGTCCACAGTAGGTTGCAATATTCGAAGTGTGTTAGAGAATCATTCTCTGTTGTAAATATGCTAAAAACTGCCATGTTTTGTCTACTTCTACAACATAGAATGTATATACATACTATTGCATTTTATATTATTCATGAGGTTTACAATTCTTGGTATAGGTGTTCACATGTGGAGATAACTCATCATTCTGTTGTGGGCATAGAGACACTGGACGCCCAATCTTCAGGCCAAGAATG</genome_strand>
        <mrna_strand>TCAATCTATGCTTCTTTGCATTGTAATGCTCAGGAAGAGCTGTTGACGCGATGTAACGGCAATTGGAAGCGTCTTTTGAGGTTCTTGATGGCTGTGGAACAGTCCTCTGATATGGTTGAAACTTCTGCAGGCAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAAATAAGGAGTGGCAGGTATCACACACTGCTAATCAATGATTCAGCAGCATACTCTTGTGGTTCCAGTTTATGCGGCGTCCTTGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTGTTCCCGTACAAGTTGCGCAAGTTTCAGCTTCTCATAATCATGCTGCTTTTGTCACAGGGTCTGGACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCACATGTGGAGATAACTCATCATTCTGTTGTGGGCATAGAGACACTGGACGCCCAATCTTCAGGCCAAGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nlezkx/sgn_ests_tomato" ref_id="SGN-E241003" ref_strand="+" ref_description="SGN-E241003 [cLED-24-D24]">
      <seq>tcaatctatgcttctttgcattgtaatgctcaggaagagctgttgacgcgatgtaacggcaattggaagcgtcttttgaggttcttgatggctgtggaacagtcctctgatatggttgaaacttctgcaggcaatatgcaaataaggagtggcaggtatcacacactgctaatcaatgattcagcagcatactcttgtggttccagtttatgcggcgtccttggtcatgggcctgaaacaactcagtgtgtggaatttactcgaattagctttcctgttcccgtacaagttgcgcaagtttcagcttctcataatcatgctgcttttgtcacagggtctggacaggtgttcacatgtggagataactcatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-XPPuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="+" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="15248" stop="16756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15548" g_stop="15682" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15683" i_stop="16219" i_length="537">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16220" g_stop="16429" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="345" r_length="210" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="+" ref_id="SGN-E241003" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15548" e_stop="15682"/>
          <exon e_start="16220" e_stop="16429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATCTATGCTTCTTTGCATTGTAATGCTCAGGAAGAGCTGTTGACGCGATGTAACGGCAATTGGAAGCGTCTTTTGAGGTTCTTGATGGCTGTGGAACAGTCCTCTGATATGGTTGAAACTTCTGCAGGCAATGTACTATTTCTTTGGAAAACTTGTTATTCGTTTATCAATGTTTACTTTGTTTGGTTGATTGCTATTTTTAGGACTAATAATATATGGTCGAAATGTTACTTATCAAATAGATGGATGAAATGTTTTCAGACACTATTTTTGTTGTTGTCAGTCAGATAGGGCCAAAAATGACACTTCTCGACCCCTTTTCGGCTTCTTCGTGTATTTACCTTATTGTATTTTGAACTCCTTAGTGAAAATTTGGACTCTTCAACTGGATGGAGCGCGTGATTCCTCTGCTTCACATATAGCAGTAGGTACTAGGCTATCTTTTTTTGTTTGGTTAAGGAATTGTATGTAAGGTTTAGTGAATTATTTAGTATTGCAATGAAATGGGACCAAATAGAATGGAATGGATAACGGTTTTATGATCGAGGTTTAGTTGCTGATTGATTTCTACCTTAATATTTCTAGATTTTAGTTACTCGCTTCTACTAGAATAGTCTGCAGCTAGGACTTCATCTTTTGTTATTACTTACTGTAAAAAGTTCTTGGCAGATGCAAATAAGGAGTGGCAGGTATCACACACTGCTAATCAATGATTCAGCAGCATACTCTTGTGGTTCCAGTTTATGCGGCGTCCTTGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTGTTCCCGTACAAGTTGCGCAAGTTTCAGCTTCTCATAATCATGCTGCTTTTGTCACAGGGTCTGGACAG</genome_strand>
        <mrna_strand>TCAATCTATGCTTCTTTGCATTGTAATGCTCAGGAAGAGCTGTTGACGCGATGTAACGGCAATTGGAAGCGTCTTTTGAGGTTCTTGATGGCTGTGGAACAGTCCTCTGATATGGTTGAAACTTCTGCAGGCAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAAATAAGGAGTGGCAGGTATCACACACTGCTAATCAATGATTCAGCAGCATACTCTTGTGGTTCCAGTTTATGCGGCGTCCTTGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTGTTCCCGTACAAGTTGCGCAAGTTTCAGCTTCTCATAATCATGCTGCTTTTGTCACAGGGTCTGGACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-nlezkx/sgn_ests_tomato" ref_id="SGN-E210073" ref_strand="+" ref_description="SGN-E210073 [cLEC-40-E2]">
      <seq>catgggcctgaaacaactcactgtgtggaatttactcgaattagctttcctgttcccgtacaagttgcgcaagtttcagcttctcataatcatgctgcttttgtcacagggtctggacaggtgttcacatgtggagataactcatcattctgttgtgggcatagagacactggacgcccaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-XPPuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="+" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="16010" stop="17613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16310" g_stop="16429" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16430" i_stop="17249" i_length="820">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17250" g_stop="17313" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="184" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="+" ref_id="SGN-E210073" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>184</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16310" e_stop="16429"/>
          <exon e_start="17250" e_stop="17313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTGTTCCCGTACAAGTTGCGCAAGTTTCAGCTTCTCATAATCATGCTGCTTTTGTCACAGGGTCTGGACAGGTTTGGCAATCGGCGTATATTATCAACTACTCTCATTTTTATTACAGTAATTTACCTTTTACGTGCACTTTGTTTTTTGCATGCATGATGTGGAAATCCTCGTTCTGTTGAGGAGTAAAGTAAAGAAGGTGAAAGAGGAAGAATGAAAATGGAGACAAGCAATCCAATCACATTTTCGTTTTTTTGGGAAATTATTTTAGGAGAGGTTCCTTTGGGAGACTGATACTAATATTGTTGAAATATATATTGACTTTGAAAAATGCAAGAACTGCCACACCATGCCACTCTGCAAAAAATAATTCTTACTATTTTAGTATGAGTTGGACCTAAAACTTACCGGCATGGTGTGGTCAATAAAATGGGGCTAACCTTAGAGACTATTAACAAAAAATACTCGGTGAATTCTTCCTATTTGCTTAAGCTTTAGTATACAATGTTAGTCGATACTTCTATGTTTCTATCTAAGTGCTGATCAAATACTTCTGCTCACTTTTTCCTATCCCTTCTGGGGAAAATCAGTCATCATTCTGCCAATTTGTAATGGCTAGTGCTACTGCAATAAAATAAGATAGAAAAAAAATTTATATTTCGAGCAGATTGATGCACCTTACGATGAGAGAGCCTCTCAAGTTTTGTACCGCTTAGACATATCCCTTACGAAAGTCCACAGTAGGTTGCAATATTCGAAGTGTGTTAGAGAATCATTCTCTGTTGTAAATATGCTAAAAACTGCCATGTTTTGTCTACTTCTACAACATAGAATGTATATACATACTATTGCATTTTATATTATTCATGAGGTTTACAATTCTTGGTATAGGTGTTCACATGTGGAGATAACTCATCATTCTGTTGTGGGCATAGAGACACTGGACGCCCAATCT</genome_strand>
        <mrna_strand>CATGGGCCTGAAACAACTCACTGTGTGGAATTTACTCGAATTAGCTTTCCTGTTCCCGTACAAGTTGCGCAAGTTTCAGCTTCTCATAATCATGCTGCTTTTGTCACAGGGTCTGGACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCACATGTGGAGATAACTCATCATTCTGTTGTGGGCATAGAGACACTGGACGCCCAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>40</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="5959" PGL_stop="198"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5959" e_stop="5634"/>
            <exon e_start="5289" e_stop="5156"/>
            <exon e_start="4890" e_stop="4761"/>
            <exon e_start="4644" e_stop="4487"/>
            <exon e_start="3990" e_stop="3889"/>
            <exon e_start="3728" e_stop="3624"/>
            <exon e_start="3462" e_stop="3334"/>
            <exon e_start="2743" e_stop="2603"/>
            <exon e_start="1640" e_stop="1540"/>
            <exon e_start="1263" e_stop="1206"/>
            <exon e_start="717" e_stop="198"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.950" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.886" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.903" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5959" e_stop="5634" e_length="326"/>
          </exon>
          <intron i_serial="1" don_prob="0.950" acc_prob="0.999">
            <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5289" e_stop="5156" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.976">
            <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="4890" e_stop="4761" e_length="130"/>
          </exon>
          <intron i_serial="3" don_prob="0.886" acc_prob="0.997">
            <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="4644" e_stop="4487" e_length="158"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4486" i_stop="3991" i_length="496"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="3990" e_stop="3889" e_length="102"/>
          </exon>
          <intron i_serial="5" don_prob="0.927" acc_prob="0.990">
            <gDNA_intron_boundary i_start="3888" i_stop="3729" i_length="160"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="3728" e_stop="3624" e_length="105"/>
          </exon>
          <intron i_serial="6" don_prob="0.903" acc_prob="0.979">
            <gDNA_intron_boundary i_start="3623" i_stop="3463" i_length="161"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="3462" e_stop="3334" e_length="129"/>
          </exon>
          <intron i_serial="7" don_prob="0.993" acc_prob="0.996">
            <gDNA_intron_boundary i_start="3333" i_stop="2744" i_length="590"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="2743" e_stop="2603" e_length="141"/>
          </exon>
          <intron i_serial="8" don_prob="0.978" acc_prob="0.944">
            <gDNA_intron_boundary i_start="2602" i_stop="1641" i_length="962"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="1640" e_stop="1540" e_length="101"/>
          </exon>
          <intron i_serial="9" don_prob="0.957" acc_prob="0.997">
            <gDNA_intron_boundary i_start="1539" i_stop="1264" i_length="276"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="1263" e_stop="1206" e_length="58"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="1205" i_stop="718" i_length="488"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="717" e_stop="198" e_length="520"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5959" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4761"/>
              <exon start="4644" stop="4487"/>
              <exon start="3990" stop="3889"/>
              <exon start="3728" stop="3652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5957" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4761"/>
              <exon start="4644" stop="4487"/>
              <exon start="3990" stop="3889"/>
              <exon start="3728" stop="3624"/>
              <exon start="3462" stop="3334"/>
              <exon start="2743" stop="2603"/>
              <exon start="1640" stop="1540"/>
              <exon start="1263" stop="1206"/>
              <exon start="717" stop="246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5957" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5953" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4761"/>
              <exon start="4644" stop="4487"/>
              <exon start="3990" stop="3965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5944" stop="5634"/>
              <exon start="5289" stop="5165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5943" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4761"/>
              <exon start="4644" stop="4490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5942" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4761"/>
              <exon start="4644" stop="4638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5941" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5940" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5939" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4761"/>
              <exon start="4644" stop="4587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5938" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5938" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5938" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5938" stop="5724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5830" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4761"/>
              <exon start="4644" stop="4487"/>
              <exon start="3990" stop="3889"/>
              <exon start="3728" stop="3625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5805" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4761"/>
              <exon start="4644" stop="4543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5739" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4761"/>
              <exon start="4644" stop="4506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5699" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4761"/>
              <exon start="4644" stop="4498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4775" stop="4761"/>
              <exon start="4644" stop="4487"/>
              <exon start="3990" stop="3889"/>
              <exon start="3728" stop="3624"/>
              <exon start="3462" stop="3334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4631" stop="4487"/>
              <exon start="3990" stop="3889"/>
              <exon start="3728" stop="3624"/>
              <exon start="3462" stop="3334"/>
              <exon start="2743" stop="2634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4590" stop="4487"/>
              <exon start="3990" stop="3889"/>
              <exon start="3728" stop="3624"/>
              <exon start="3462" stop="3334"/>
              <exon start="2743" stop="2664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3903" stop="3889"/>
              <exon start="3728" stop="3624"/>
              <exon start="3462" stop="3334"/>
              <exon start="2743" stop="2603"/>
              <exon start="1640" stop="1540"/>
              <exon start="1263" stop="1206"/>
              <exon start="717" stop="534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3667" stop="3624"/>
              <exon start="3462" stop="3334"/>
              <exon start="2743" stop="2603"/>
              <exon start="1640" stop="1540"/>
              <exon start="1263" stop="1206"/>
              <exon start="717" stop="694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3638" stop="3624"/>
              <exon start="3462" stop="3334"/>
              <exon start="2743" stop="2603"/>
              <exon start="1640" stop="1540"/>
              <exon start="1263" stop="1206"/>
              <exon start="717" stop="668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3461" stop="3334"/>
              <exon start="2743" stop="2603"/>
              <exon start="1640" stop="1540"/>
              <exon start="1263" stop="1206"/>
              <exon start="717" stop="606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2681" stop="2603"/>
              <exon start="1640" stop="1540"/>
              <exon start="1263" stop="1206"/>
              <exon start="717" stop="225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262241" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1640" stop="1540"/>
              <exon start="1263" stop="1206"/>
              <exon start="717" stop="225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263600" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="668" stop="198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="649" stop="217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="631" stop="232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258121" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTGGAGTGTATACTACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG : GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG : CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG : ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAG : GTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAG : TGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAG : GGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAAT : GTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTG : GTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTG : GGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAG : GGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTAATATGGGCGGATTATCCTTTAGACTTGCAACATCCACAGTTCTGGAATCGAGTTTTCGTATATCGTTTTTACAATCTTTTAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTCGTATTTTTGTTTTAACGTTTATTTCGAATTGAGTGTTAATGGAAATGATTAATATCATCTAGCTCAACTTGTTTAAGATTGAAGCTTCTTTCTGTTCTATACGA</gDNA_template>
            <first_frame> C  G  V  Y  T  T  N  R  P  R  R  L  R  Y  *  R  *  S  P  I  P  K  P  *  F  C  S  S  Y  I  G  D  G  E  E  E  R  E  V  G  E  C  I  G  K  A  K  A  F  I  G  L  Q  *  G  C  Q  R  S  Q  K  W  P  *  R  R  Y  C  A  A  A  Q  D  V  Q  Y  Q  A  E  A  *  S  S  G  S  H  N  *  A  R  L  T  I  K  G  A  A  I  N  K  D  T  T  R  S  S  L  V  R :   *  Y  S  G  G  Q  P  E  G  T  G  V  F  *  R  R  A  P  N  S  A  F  Q  *  L  Q  C  Y  I  K  R  K  E  V  A  H  V  P  F  K  *  S  S  E   : A  S  K  S  S  S  A  *  Q  *  A  I  C  *  C  F  W  T  K  N  K  E  E  T  P  Q  T  Y  G  I  R  L  *  S  F  S  E  E  G  *  C  V  S  * :   *  F  *  R  Q  T  W  C  *  H  L  H  G  *  K  C  *  W  I  Q  R  S  C  *  A  H  N  V  *  E  R  T  K  *  T  N  L  E  *  A  L  Q  S  H  R  L  F  *  C  R  Y  S   : G  S  *  C  Q  R  P  L  W  Y  K  V  L  P  F  G  E  T  F  E  R  K  L  Q  A  Q  T  Y  G  P  F  A  *  *   : V  *  F  G  P  C  L  G  N  K  G  M  A  *  S  A  L  *  G  I  S  N  F  G  I  S  C  K  C  H  Q  V  L  W  K   : G  F  S  F  V  S  A  E  T  V  F  S  S  K  E  R  *  A  S  N  L  C  W  F  Y  R  L  S  Q  C  W  Q  V  I  S  Y  *  Y  I  A  H  K  E   : C  L  Q  G  G  S  Y  P  R  R  D  *  S  V  A  V  H  Y  T  H  K  E  D  I  L  D  *  L  S  W  C  S  L  S  E  S  *  F  R  N  R  Y  S  L  E  G  R   : G  T  S  D  K  P  T  *  C  F  *  T  H  *  R  S  V  E  S  R  *  E  G  A  S  *  K  S  L  *  D  R  E  L  :  G  *  R  V  *  L  S  S  T  A  M  Q  V  F  R  Q  T  S  E   : G  R  *  T  *  L  Q  Y  C  C  Q  D  G  S  P  *  L  A  K  R  Q  H  S  F  L  C  S  T  S  K  A  *  *  *  A  K  *  T  C  R  R  G  R  H  S  R  *  *  R  S  G  H  S  C  S  Q  S  Y  C  *  R  R  F  I  T  T  T  E  G  S  S  C  S  G  G  T  I  *  *  G  *  A  V  G  *  K  L  I  W  A  D  Y  P  L  D  L  Q  H  P  Q  F  W  N  R  V  F  V  Y  R  F  Y  N  L  L  V  G  S  I  A  F  P  E  F  S  S  P  R  R  D  *  Y  T  G  R  K  Y  R  Y  L  V  F  L  F  *  R  L  F  R  I  E  C  *  W  K  *  L  I  S  S  S  S  T  C  L  R  L  K  L  L  S  V  L  Y   </first_frame>
            <second_frame>  V  E  C  I  L  Q  T  G  L  D  D  *  G  I  N  V  N  R  R  F  L  N  P  S  F  V  L  R  I  S  E  M  A  K  K  K  E  R  S  V  N  V  S  G  K  P  K  H  S  L  D  S  N  R  D  V  S  A  A  K  N  G  R  S  A  A  T  V  R  R  L  K  M  Y  N  T  R  P  K  R  N  P  Q  G  H  I  I  K  H  D  L  Q  S  K  E  L  P  S  T  R  I  Q  P  D  R  R  W  F   : G  N  T  R  V  V  N  Q  K  E  L  E  F  F  R  E  E  L  Q  T  R  L  S  S  N  Y  N  V  I  L  K  E  R  K  L  P  M  S  L  L  N  D  H  Q  K  :  Q  V  K  V  H  L  L  D  N  E  P  F  A  D  A  F  G  P  K  T  K  R  K  R  P  K  L  M  A  L  D  Y  E  A  L  V  K  K  V  D  V  S  H   : D  D  F  E  D  K  H  G  A  S  T  S  M  D  E  N  A  D  G  F  R  D  L  V  R  H  T  M  F  E  K  G  Q  S  K  R  I  W  S  E  L  Y  K  V  I  D  S  S  D  V  V  I  Q  :  V  L  D  A  R  D  P  C  G  T  R  C  Y  H  L  E  K  H  L  K  E  N  C  K  H  K  H  M  V  L  L  L  N  K  :  C  D  L  V  P  A  W  A  T  K  G  W  L  R  V  L  S  R  E  Y  P  T  L  A  F  H  A  S  V  T  K  S  F  G  K  :  G  S  L  L  S  V  L  R  Q  F  S  R  L  K  S  D  K  Q  A  I  S  V  G  F  I  G  Y  P  N  V  G  K  S  S  V  I  N  T  L  R  T  K  N  :  V  C  K  V  A  P  I  P  G  E  T  K  V  W  Q  Y  I  T  L  T  K  R  I  F  L  I  D  C  P  G  V  V  Y  Q  N  H  D  S  E  T  D  I  V  L  K  G  V  :  V  R  V  T  N  L  P  D  A  S  E  H  I  S  E  V  L  N  R  V  K  K  E  H  L  K  R  A  Y  K  I  E  N  W :   V  D  E  Y  D  F  L  Q  Q  L  C  K  S  S  G  K  L  L  K  :  G  G  E  P  D  Y  N  T  A  A  K  M  V  L  H  D  W  Q  R  G  N  I  P  F  F  V  P  P  P  K  L  D  D  E  P  N  E  L  V  A  E  A  D  T  A  V  D  N  D  Q  A  T  A  A  L  K  A  I  A  D  V  V  S  S  Q  Q  L  K  E  V  P  V  Q  E  E  L  F  S  K  A  E  L  L  G  E  N  *  Y  G  R  I  I  L  *  T  C  N  I  H  S  S  G  I  E  F  S  Y  I  V  F  T  I  F  *  L  G  P  L  H  S  Q  S  F  L  V  L  E  E  I  D  I  L  V  E  N  I  D  T  S  Y  F  C  F  N  V  Y  F  E  L  S  V  N  G  N  D  *  Y  H  L  A  Q  L  V  *  D  *  S  F  F  L  F  Y  T  </second_frame>
            <third_frame>   W  S  V  Y  Y  K  P  A  *  T  T  E  V  L  T  L  I  A  D  S  *  T  L  V  L  F  F  V  Y  R  R  W  R  R  R  K  R  G  R  *  M  Y  R  E  S  Q  S  I  H  W  T  P  I  G  M  S  A  Q  P  K  M  A  V  A  P  L  L  C  G  G  S  R  C  T  I  P  G  R  S  V  I  L  R  V  T  *  L  S  T  T  Y  N  Q  R  S  C  H  Q  Q  G  Y  N  Q  I  V  V  G  S  :  V  I  L  G  W  S  T  R  R  N  W  S  F  L  E  K  S  S  K  L  G  F  P  V  T  T  M  L  Y  *  K  K  G  S  C  P  C  P  F  *  M  I  I  R  S :   K  *  K  F  I  C  L  T  M  S  H  L  L  M  L  L  D  Q  K  Q  R  G  N  A  P  N  L  W  H  *  I  M  K  L  *  *  R  R  L  M  C  L  M  :  M  I  L  K  T  N  M  V  L  A  P  P  W  M  K  M  L  M  D  S  E  I  L  L  G  T  Q  C  L  R  K  D  K  V  N  E  F  G  V  S  S  T  K  S  *  T  L  L  M  S  L  F  R :   F  L  M  P  E  T  P  V  V  Q  G  A  T  I  W  R  N  I  *  K  K  I  A  S  T  N  I  W  S  F  C  L  I  S :   V  I  W  S  L  L  G  Q  Q  R  D  G  L  E  C  S  L  G  N  I  Q  L  W  H  F  M  Q  V  S  P  S  P  L  E  R :   V  L  F  C  Q  C  *  D  S  F  L  V  *  R  A  I  S  K  Q  S  L  L  V  L  *  A  I  P  M  L  A  S  H  Q  L  L  I  H  C  A  Q  R  M :   F  A  R  W  L  L  S  Q  E  R  L  K  C  G  S  T  L  H  S  Q  R  G  Y  S  *  L  I  V  L  V  *  F  I  R  I  M  I  P  K  Q  I  *  S  *  R  A  W :   Y  E  *  Q  T  Y  L  M  L  L  N  T  L  A  K  C  *  I  A  L  R  R  S  I  L  K  E  L  I  R  *  R  I   : G  L  T  S  M  T  F  F  N  S  Y  A  S  L  Q  A  N  F  *  R :   E  V  N  L  T  T  I  L  L  P  R  W  F  S  M  I  G  K  E  A  T  F  L  S  L  F  H  L  Q  S  L  M  M  S  Q  M  N  L  S  Q  R  Q  T  Q  P  L  I  T  I  R  P  Q  L  L  S  K  L  L  L  T  S  F  H  H  N  N  *  R  K  F  L  F  R  R  N  Y  L  V  R  L  S  C  W  V  K  T  N  M  G  G  L  S  F  R  L  A  T  S  T  V  L  E  S  S  F  R  I  S  F  L  Q  S  F  S  W  V  H  C  I  P  R  V  F  *  S  *  K  R  L  I  Y  W  S  K  I  *  I  P  R  I  F  V  L  T  F  I  S  N  *  V  L  M  E  M  I  N  I  I  *  L  N  L  F  K  I  E  A  S  F  C  S  I  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0103N02.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5922" stop="5634"/>
                    <exon start="5289" stop="5156"/>
                    <exon start="4890" stop="4761"/>
                    <exon start="4644" stop="4487"/>
                    <exon start="3990" stop="3889"/>
                    <exon start="3728" stop="3624"/>
                    <exon start="3462" stop="3334"/>
                    <exon start="2743" stop="2603"/>
                    <exon start="1640" stop="1540"/>
                    <exon start="1263" stop="1206"/>
                    <exon start="717" stop="457"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1605</number_coding_nucleotides>
                  <number_encoded_amino_acids>535</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GINVNRRFLNPSFVLRISEMAKKKERSVNVSGKPKHSLDSNRDVSAAKNGRSAATVRRLKMYNTRPKRNPQGHIIKHDLQSKELPSTRIQPDRRWFGNTRVVNQKELEFFREELQTRLSSNYNVILKERKLPMSLLNDHQKQVKVHLLDNEPFADAFGPKTKRKRPKLMALDYEALVKKVDVSHDDFEDKHGASTSMDENADGFRDLVRHTMFEKGQSKRIWSELYKVIDSSDVVIQVLDARDPCGTRCYHLEKHLKENCKHKHMVLLLNKCDLVPAWATKGWLRVLSREYPTLAFHASVTKSFGKGSLLSVLRQFSRLKSDKQAISVGFIGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQNHDSETDIVLKGVVRVTNLPDASEHISEVLNRVKKEHLKRAYKIENWVDEYDFLQQLCKSSGKLLKGGEPDYNTAAKMVLHDWQRGNIPFFVPPPKLDDEPNELVAEADTAVDNDQATAALKAIADVVSSQQLKEVPVQEELFSKAELLGEN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="2404" e_stop="2064"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2404" e_stop="2064" e_length="341"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2404" stop="2064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2404" stop="2064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCCT</gDNA_template>
            <first_frame> I  P  E  M  C  S  Y  G  D  L  R  S  N  I  L  L  C  S  L  F  I  S  T  S  I  L  F  S  *  K  F  L  L  L  A  F  F  *  N  E  I  L  V  A  N  V  N  L  G  *  L  L  G  Q  R  F  Y  D  W  H  T  *  D  D  L  I  *  L  *  C  R  K  H  L  V  M  N  T  F  G  *  G  K  I  G  N  K  S  I  A  M  M  L  L  C  G  C  W  S  S  L  L  W  N  F  D  D  I  A  L  K  E  V   </first_frame>
            <second_frame>  F  Q  R  C  V  L  M  V  I  *  D  Q  I  S  S  C  V  H  F  L  *  V  L  Q  F  C  F  P  R  S  S  Y  C  W  H  F  F  K  M  K  F  W  S  P  M  L  I  *  A  S  Y  *  D  S  A  S  M  T  G  I  H  R  M  I  S  Y  S  Y  D  V  G  S  I  *  S  *  I  H  L  D  R  G  R  L  E  T  N  Q  L  Q  *  C  C  C  V  D  A  G  L  P  Y  F  G  T  S  M  I  L  L  *  K  R  S  </second_frame>
            <third_frame>   S  R  D  V  F  L  W  *  F  E  I  K  Y  P  L  V  F  T  F  Y  K  Y  F  N  F  V  F  L  E  V  L  I  V  G  I  F  L  K  *  N  F  G  R  Q  C  *  F  R  L  A  T  R  T  A  L  L  *  L  A  Y  I  G  *  S  H  I  V  M  M  S  E  A  F  S  H  E  Y  I  W  I  G  E  D  W  K  Q  I  N  C  N  D  A  V  V  W  M  L  V  F  P  T  L  E  L  R  *  Y  C  S  E  R  G  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0103N02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="2065" PGL_stop="2405"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2065" e_stop="2405"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2065" e_stop="2405" e_length="341"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2065" stop="2405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2065" stop="2405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372887" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGACCTCTTTCAGAGCAATATCATCGAAGTTCCAAAGTAGGGAAGACCAGCATCCACACAACAGCATCATTGCAATTGATTTGTTTCCAATCTTCCCCTATCCAAATGTATTCATGACTAAATGCTTCCGACATCATAACTATATGAGATCATCCTATGTATGCCAGTCATAGAAGCGCTGTCCTAGTAGCTAGCCTAAATTAACATTGGCGACCAAAATTTCATTTTAAAAAAATGCCAACAATAAGAACTTCTAGGAAAACAAAATTGAAGTACTTATAAAAAGTGAACACAAGAGGATATTTGATCTCAAATCACCATAAGAACACATCTCTGGAATT</gDNA_template>
            <first_frame> G  P  L  S  E  Q  Y  H  R  S  S  K  V  G  K  T  S  I  H  T  T  A  S  L  Q  L  I  C  F  Q  S  S  P  I  Q  M  Y  S  *  L  N  A  S  D  I  I  T  I  *  D  H  P  M  Y  A  S  H  R  S  A  V  L  V  A  S  L  N  *  H  W  R  P  K  F  H  F  K  K  M  P  T  I  R  T  S  R  K  T  K  L  K  Y  L  *  K  V  N  T  R  G  Y  L  I  S  N  H  H  K  N  T  S  L  E   </first_frame>
            <second_frame>  D  L  F  Q  S  N  I  I  E  V  P  K  *  G  R  P  A  S  T  Q  Q  H  H  C  N  *  F  V  S  N  L  P  L  S  K  C  I  H  D  *  M  L  P  T  S  *  L  Y  E  I  I  L  C  M  P  V  I  E  A  L  S  *  *  L  A  *  I  N  I  G  D  Q  N  F  I  L  K  K  C  Q  Q  *  E  L  L  G  K  Q  N  *  S  T  Y  K  K  *  T  Q  E  D  I  *  S  Q  I  T  I  R  T  H  L  W  N  </second_frame>
            <third_frame>   T  S  F  R  A  I  S  S  K  F  Q  S  R  E  D  Q  H  P  H  N  S  I  I  A  I  D  L  F  P  I  F  P  Y  P  N  V  F  M  T  K  C  F  R  H  H  N  Y  M  R  S  S  Y  V  C  Q  S  *  K  R  C  P  S  S  *  P  K  L  T  L  A  T  K  I  S  F  *  K  N  A  N  N  K  N  F  *  E  N  K  I  E  V  L  I  K  S  E  H  K  R  I  F  D  L  K  S  P  *  E  H  I  S  G  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0103N02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="15020" PGL_stop="17327"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15020" e_stop="15682"/>
            <exon e_start="16220" e_stop="16429"/>
            <exon e_start="17250" e_stop="17327"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.877" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.966" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15020" e_stop="15682" e_length="663"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.877">
            <gDNA_intron_boundary i_start="15683" i_stop="16219" i_length="537"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16220" e_stop="16429" e_length="210"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.966">
            <gDNA_intron_boundary i_start="16430" i_stop="17249" i_length="820"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17250" e_stop="17327" e_length="78"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15020" stop="15179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15038" stop="15682"/>
              <exon start="16220" stop="16361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15039" stop="15528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15548" stop="15682"/>
              <exon start="16220" stop="16429"/>
              <exon start="17250" stop="17327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15548" stop="15682"/>
              <exon start="16220" stop="16429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16310" stop="16429"/>
              <exon start="17250" stop="17313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210073" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAGGACCCCTCAACTCAATTTTCATTCATAGATCCGATATTTGCTCAAATTTGTGTTTATAAAGTTCCTATCTTTGTGGGGTTTTGGAGTTTTTTCTTGTAATTTGGTAGAAAAAGAGTTTAATTTTGTTTTGTTTGTTCAAGTTTGTGTTTTGGGGTTGTTGTTTCTTGATGATTTATTTCGACTTAGATTATAAGATTTCCCCACCAAGTCCTTCATTTTCTTATTCAATTTCATCAAATTTTCTTACATCTGATATTTTCTTGATAAAGTGTGTTAATTGTTTCCATTTTCGTATAAAAGATTGTTTTTGTGAAGGGAAAATGGGGGATCGTTTGAGGTCAACTTTAATGGAGGATTTGCCAGTACATTTGATTCTTGAAATATTGATGTGCGGTCGATTAGCTGTTATTGATTTAATAAGTTTAGAGCTAACTTCAAGGACTTTTAGGGGAACACATGGTTTGTTTCCTAAAAAGTTCAAGTCTTTGGTAGATTATGCTGCTTTTCAGCTTTGTGGATTGAGTTCAATCTATGCTTCTTTGCATTGTAATGCTCAGGAAGAGCTGTTGACGCGATGTAACGGCAATTGGAAGCGTCTTTTGAGGTTCTTGATGGCTGTGGAACAGTCCTCTGATATGGTTGAAACTTCTGCAGGCAAT : ATGCAAATAAGGAGTGGCAGGTATCACACACTGCTAATCAATGATTCAGCAGCATACTCTTGTGGTTCCAGTTTATGCGGCGTCCTTGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTGTTCCCGTACAAGTTGCGCAAGTTTCAGCTTCTCATAATCATGCTGCTTTTGTCACAGGGTCTGGACAG : GTGTTCACATGTGGAGATAACTCATCATTCTGTTGTGGGCATAGAGACACTGGACGCCCAATCTTCAGGCCAAGAATG</gDNA_template>
            <first_frame> Q  G  P  L  N  S  I  F  I  H  R  S  D  I  C  S  N  L  C  L  *  S  S  Y  L  C  G  V  L  E  F  F  L  V  I  W  *  K  K  S  L  I  L  F  C  L  F  K  F  V  F  W  G  C  C  F  L  M  I  Y  F  D  L  D  Y  K  I  S  P  P  S  P  S  F  S  Y  S  I  S  S  N  F  L  T  S  D  I  F  L  I  K  C  V  N  C  F  H  F  R  I  K  D  C  F  C  E  G  K  M  G  D  R  L  R  S  T  L  M  E  D  L  P  V  H  L  I  L  E  I  L  M  C  G  R  L  A  V  I  D  L  I  S  L  E  L  T  S  R  T  F  R  G  T  H  G  L  F  P  K  K  F  K  S  L  V  D  Y  A  A  F  Q  L  C  G  L  S  S  I  Y  A  S  L  H  C  N  A  Q  E  E  L  L  T  R  C  N  G  N  W  K  R  L  L  R  F  L  M  A  V  E  Q  S  S  D  M  V  E  T  S  A  G  N  :  M  Q  I  R  S  G  R  Y  H  T  L  L  I  N  D  S  A  A  Y  S  C  G  S  S  L  C  G  V  L  G  H  G  P  E  T  T  Q  C  V  E  F  T  R  I  S  F  P  V  P  V  Q  V  A  Q  V  S  A  S  H  N  H  A  A  F  V  T  G  S  G  Q  :  V  F  T  C  G  D  N  S  S  F  C  C  G  H  R  D  T  G  R  P  I  F  R  P  R  M </first_frame>
            <second_frame>  K  D  P  S  T  Q  F  S  F  I  D  P  I  F  A  Q  I  C  V  Y  K  V  P  I  F  V  G  F  W  S  F  F  L  *  F  G  R  K  R  V  *  F  C  F  V  C  S  S  L  C  F  G  V  V  V  S  *  *  F  I  S  T  *  I  I  R  F  P  H  Q  V  L  H  F  L  I  Q  F  H  Q  I  F  L  H  L  I  F  S  *  *  S  V  L  I  V  S  I  F  V  *  K  I  V  F  V  K  G  K  W  G  I  V  *  G  Q  L  *  W  R  I  C  Q  Y  I  *  F  L  K  Y  *  C  A  V  D  *  L  L  L  I  *  *  V  *  S  *  L  Q  G  L  L  G  E  H  M  V  C  F  L  K  S  S  S  L  W  *  I  M  L  L  F  S  F  V  D  *  V  Q  S  M  L  L  C  I  V  M  L  R  K  S  C  *  R  D  V  T  A  I  G  S  V  F  *  G  S  *  W  L  W  N  S  P  L  I  W  L  K  L  L  Q  A  I :   C  K  *  G  V  A  G  I  T  H  C  *  S  M  I  Q  Q  H  T  L  V  V  P  V  Y  A  A  S  L  V  M  G  L  K  Q  L  S  V  W  N  L  L  E  L  A  F  L  F  P  Y  K  L  R  K  F  Q  L  L  I  I  M  L  L  L  S  Q  G  L  D  R :   C  S  H  V  E  I  T  H  H  S  V  V  G  I  E  T  L  D  A  Q  S  S  G  Q  E   </second_frame>
            <third_frame>   R  T  P  Q  L  N  F  H  S  *  I  R  Y  L  L  K  F  V  F  I  K  F  L  S  L  W  G  F  G  V  F  S  C  N  L  V  E  K  E  F  N  F  V  L  F  V  Q  V  C  V  L  G  L  L  F  L  D  D  L  F  R  L  R  L  *  D  F  P  T  K  S  F  I  F  L  F  N  F  I  K  F  S  Y  I  *  Y  F  L  D  K  V  C  *  L  F  P  F  S  Y  K  R  L  F  L  *  R  E  N  G  G  S  F  E  V  N  F  N  G  G  F  A  S  T  F  D  S  *  N  I  D  V  R  S  I  S  C  Y  *  F  N  K  F  R  A  N  F  K  D  F  *  G  N  T  W  F  V  S  *  K  V  Q  V  F  G  R  L  C  C  F  S  A  L  W  I  E  F  N  L  C  F  F  A  L  *  C  S  G  R  A  V  D  A  M  *  R  Q  L  E  A  S  F  E  V  L  D  G  C  G  T  V  L  *  Y  G  *  N  F  C  R  Q   : Y  A  N  K  E  W  Q  V  S  H  T  A  N  Q  *  F  S  S  I  L  L  W  F  Q  F  M  R  R  P  W  S  W  A  *  N  N  S  V  C  G  I  Y  S  N  *  L  S  C  S  R  T  S  C  A  S  F  S  F  S  *  S  C  C  F  C  H  R  V  W  T   : G  V  H  M  W  R  *  L  I  I  L  L  W  A  *  R  H  W  T  P  N  L  Q  A  K  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0103N02.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15131" stop="15682"/>
                    <exon start="16220" stop="16429"/>
                    <exon start="17250" stop="17327"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>840</number_coding_nucleotides>
                  <number_encoded_amino_acids>280</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKSLILFCLFKFVFWGCCFLMIYFDLDYKISPPSPSFSYSISSNFLTSDIFLIKCVNCFHFRIKDCFCEGKMGDRLRSTLMEDLPVHLILEILMCGRLAVIDLISLELTSRTFRGTHGLFPKKFKSLVDYAAFQLCGLSSIYASLHCNAQEELLTRCNGNWKRLLRFLMAVEQSSDMVETSAGNMQIRSGRYHTLLINDSAAYSCGSSLCGVLGHGPETTQCVEFTRISFPVPVQVAQVSASHNHAAFVTGSGQVFTCGDNSSFCCGHRDTGRPIFRPRM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 43 chains have been computed
$ 
$ memory statistics:
$ 84080 bytes spliced alignments in total
$ 40 spliced alignments have been stored
$ 2102 bytes was the average size of a spliced alignment
$ 8544 bytes predicted gene locations in total
$ 3 predicted gene locations have been stored
$ 2848 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 46 backtrace matrices have been allocated
$ 
$ date finished: 2008-04-18 00:12:47
-->
