<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-03-07 04:49:06"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0129L05-iYHHn/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-VAjcIY/lycopersicum_combined_unigene_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-VAjcIY/lycopersicum_combined_unigene_seqs" ref_id="SGN-U340168" ref_strand="+" ref_description="SGN-U340168        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | lanthionine synthetase C-like family protein, contains Pfam domain, PF05147: Lanthionine synthetase C-like protein | chr1:19713028-19714689 REVERSE | Aliases: F14G24.19, F14G24_19(evalue: 2e-67, score=253) genbank/nr: gi|37535720|ref|NP_922162.1| putative lanthionine synthetase [Oryza sativa (japonica cultivar-group)] gi|18071409|gb|AAL58268.1| putative lanthionine synthetase [Oryza sativa (japonica cultivar-group)] gi|31432873|gb|AAP54449.1| putative lanthionine synthetase [Oryza sativa (japonica cultivar-group)](evalue: 3e-68, score=261)">
      <seq>ttttttttttttttttttgtaatttacttttctatacaacttattagagtatgataagatagaatgtttcacgttaccttttaacaatacatcatatgataatacatctaccttacataaaaaagattaacatagccaattctacaacccacaacatgttcattctgtatgtacaaaactagagtgattgtgttcattttctgtatgtacaaaactagagttcataagcagggaaccttgtttctattggatctatcatgtcgaaaaagagataagccattcctcccattccttcaaacaacgagtatggacgatcacctccatgcataactccctctgatatgagtgtttgagctctagtgtgcagaaagcacgcgaaggcctttgccttgtacaagtactcaactttacctgtcaaacgatacagtgaaagaaagacataggaatttccactaacaccgtgacatattccaactcgtttgagtaagcctcgattccaaatcacctcagctgcttctatagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-iYHHn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="+" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="1482" stop="2592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1769" g_stop="2292" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="+" ref_id="SGN-U340168" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U340168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1769" e_stop="2292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAGGTGAAATTTTTGTAATTTACTTTTCTATACAACTTATTAGAGTATGATAAGATAGAATGTTTCACGTTACCTTTTAACAATACATCATATGATAATACATCTACCTTACATAAAAAAGATTAACATAGCCAATTCTACAACCCACAACATGTTCATTCTGTATGTACAAAACTAGAGTGATTGTGTTCATTTTCTGTATGTACAAAACTAGAGTTCATAAGCAGGGAACCTTGTTTCTATTGGATCTATCATGTCGAAAAAGAGATAAGCCATTCCTCCCATTCCTTCAAACAACGAGTATGGACGATCACCTCCATGCATAACTCCCTCTGATATGAGTGTTTGAGCTCTAGTGTGCAGAAAGCACGCGAAGGCCTTTGCCTTGTACAAGTACTCAACTTTACCTGTCAAACGATACAGTGAAAGAAAGACATAGGAATTTCCACTAACACCGTGACATATTCCAACTCGTTTGAGTAAGCCTCGATTCCAAATCACCTCAGCTGCTTCTATAGCT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTGTAATTTACTTTTCTATACAACTTATTAGAGTATGATAAGATAGAATGTTTCACGTTACCTTTTAACAATACATCATATGATAATACATCTACCTTACATAAAAAAGATTAACATAGCCAATTCTACAACCCACAACATGTTCATTCTGTATGTACAAAACTAGAGTGATTGTGTTCATTTTCTGTATGTACAAAACTAGAGTTCATAAGCAGGGAACCTTGTTTCTATTGGATCTATCATGTCGAAAAAGAGATAAGCCATTCCTCCCATTCCTTCAAACAACGAGTATGGACGATCACCTCCATGCATAACTCCCTCTGATATGAGTGTTTGAGCTCTAGTGTGCAGAAAGCACGCGAAGGCCTTTGCCTTGTACAAGTACTCAACTTTACCTGTCAAACGATACAGTGAAAGAAAGACATAGGAATTTCCACTAACACCGTGACATATTCCAACTCGTTTGAGTAAGCCTCGATTCCAAATCACCTCAGCTGCTTCTATAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-VAjcIY/lycopersicum_combined_unigene_seqs" ref_id="SGN-U342178" ref_strand="+" ref_description="SGN-U342178        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | lanthionine synthetase C-like family protein, contains Pfam domain, PF05147: Lanthionine synthetase C-like protein | chr1:19713028-19714689 REVERSE | Aliases: F14G24.19, F14G24_19(evalue: 6e-79, score=290) genbank/nr: gi|15219126|ref|NP_175700.1| G protein-coupled receptor -related [Arabidopsis thaliana] gi|25405614|pir||E96570 hypothetical protein F14G24.19 [imported] - Arabidopsis thaliana gi|12324628|gb|AAG52264.1| putative G protein-coupled receptor; 80093-78432 [Arabidopsis thaliana](evalue: 4e-77, score=290)">
      <seq>ccaaatgagttgttgtatgggagggctggtttcttgtgggcttgggcattcttaaacaaaaatattggtagagaaacaatatctccaacccaaattcgagcagttgttgctgaggttataaagtccggacgaaaaatggggaaaggaaaatgtccactgatgtatgaatggcatggaaaaagatactggggtgctgctcatggactagctgggataatgcatgtacttatggacatggaactgaaagcagatgaggtcgaggatgtgaaggctacactgcattacatgatccgaaatcgttttcctagtggaaattacccctcaagtgaaggaagtgaatctgaccgacttgtgcattggtgtcatggtgctccaggtgttgcccttactctaatcaaagcagctaaggttttcagcaatgacgagtttctgcaggcagctatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-iYHHn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="-" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="3263" stop="1985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2963" g_stop="2868" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2867" i_stop="2787" i_length="81">
            <donor d_prob="0.790" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2786" g_stop="2475" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="408" r_length="312" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2474" i_stop="2322" i_length="153">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2321" g_stop="2285" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="445" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="-" ref_id="SGN-U342178" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U342178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2963" e_stop="2868"/>
          <exon e_start="2786" e_stop="2475"/>
          <exon e_start="2321" e_stop="2285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATGAGTTGTTGTATGGGAGGGCTGGTTTCTTGTGGGCTTGTTCATTCTTAAACAAAAATATTGGTAGAGAAACAATATCTCCAACCCAAATTGTAAGAAACTTCACAAATTTCGATCACGTATGCTTCCTCATTATGAATGGCTCTTTATTTCTTCGGAATTTTTTTATGCAGCGAGCAGTTGTTGCTGAGGTTATAAAGTCCGGACGAAAAATGGGGAAAGGAAAATGTCCACTGATGTATGAATGGCATGGAAAAAGATACTGGGGTGCTGCTCATGGACTAGCTGGGATAATGCATGTACTTATGGACATGGAACTGAAAGCAGATGAGGTCGAGGATGTGAAGGCTACACTGCATTACATGATCCGAAATCGTTTTCCTAGTGGAAATTACCCCTCAAGTGAAGGAAGTGAATCTGACCGACTTGTGCATTGGTGTCATGGTGCTCCAGGTGTTGCCCTTACTCTAATCAAAGCAGCTAAGGTATGGACTATGGAGTAATACCTTGCACAGACACAGTAATCTTGATGTTAGTTCCTAATAGTTACTATATAAAACTCCTCAATCCGCGTAGACATGAGATGAAATGCGTGATCCTGGAAGGGCTTTCTGCTCATCATTGTCGTAACTTTTCAGGTTTTCAGCAATGACGAGTTTCTGCAGGCAGCTATAG</genome_strand>
        <mrna_strand>CCAAATGAGTTGTTGTATGGGAGGGCTGGTTTCTTGTGGGCTTGGGCATTCTTAAACAAAAATATTGGTAGAGAAACAATATCTCCAACCCAAATT.................................................................................CGAGCAGTTGTTGCTGAGGTTATAAAGTCCGGACGAAAAATGGGGAAAGGAAAATGTCCACTGATGTATGAATGGCATGGAAAAAGATACTGGGGTGCTGCTCATGGACTAGCTGGGATAATGCATGTACTTATGGACATGGAACTGAAAGCAGATGAGGTCGAGGATGTGAAGGCTACACTGCATTACATGATCCGAAATCGTTTTCCTAGTGGAAATTACCCCTCAAGTGAAGGAAGTGAATCTGACCGACTTGTGCATTGGTGTCATGGTGCTCCAGGTGTTGCCCTTACTCTAATCAAAGCAGCTAAG.........................................................................................................................................................GTTTTCAGCAATGACGAGTTTCTGCAGGCAGCTATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-VAjcIY/lycopersicum_combined_unigene_seqs" ref_id="SGN-U327094" ref_strand="+" ref_description="SGN-U327094        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | lanthionine synthetase C-like family protein, contains Pfam domain, PF05147: Lanthionine synthetase C-like protein | chr2:8952399-8955361 FORWARD | Aliases: F5H14.26, F5H14_26(evalue: 4e-53, score=204) genbank/nr: gi|30681129|ref|NP_850003.1| expressed protein [Arabidopsis thaliana] gi|17380956|gb|AAL36290.1| unknown protein [Arabidopsis thaliana] gi|20465391|gb|AAM20120.1| unknown protein [Arabidopsis thaliana](evalue: 2e-51, score=204)">
      <seq>aataaagaaaaaaacttacactaccccggatagacttgctctgttctgtcttctgagaaccaccggagctctgttctttccataaatttgttccggcggaggattcaacagaaccggaaataaagagatgccagatcgtttctttccaaacaccatgcctagttttgttgatgaaactacagttaaagaatcatttcttgaaggagcaaaagatccattgttagagcttctgtatttgccttatggtactgtttgcgacaagctcaaaagggttgcttttgatctcaaagaaacgattgtgaaggagacatgggtatgtaaaaggggaagagtgagtgactatacaatttacactggagctttaggaactgcttttttgttatttaaagcttaccaagttactcttgacaagaatgatcttgctctctgttctgatattatcaaggcttgtgactctgcttcccgtggttctgggcgtgtgactttcatatgtggacaagctggtgtttattctcttggtgcagttgtggccaaacagagcggggatgaacaattgtgtgatcactatctgacgaaattcaaagagattgagcttcctaaagatcttccaaatgagttgttgtatgggagggctggtttcttgtgggcttgttcattcttaaacaaaaatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-iYHHn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="-" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="4764" stop="2598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4464" g_stop="4170" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4169" i_stop="4079" i_length="91">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4078" g_stop="3900" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="474" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3899" i_stop="3170" i_length="730">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3169" g_stop="3058" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="586" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3057" i_stop="2985" i_length="73">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2984" g_stop="2898" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="673" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="-" ref_id="SGN-U327094" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4464" e_stop="4170"/>
          <exon e_start="4078" e_stop="3900"/>
          <exon e_start="3169" e_stop="3058"/>
          <exon e_start="2984" e_stop="2898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAAGAAAAAAACTTACACTACCCCGGATAGACTTGCTCTGTTCTGTCTTCTGAGAACCACCGGAGCTCTGTTCTTTCCATAAATTTGTTCCGGCGGAGGATTCAACAGAACCGGAAATAAAGAGATGCCAGATCGTTTCTTTCCAAACACCATGCCTAGTTTTGTTGATGAAACTACAGTTAAAGAATCATTTCTTGAAGGAGCAAAAGATCCATTGTTAGAGCTTCTGTATTTGCCTTATGGTACTGTTTGCGACAAGCTCAAAAGGGTTGCTTTTGATCTCAAAGAAACGGTAATCACTTCTCTTGAGTATAGAGTGCCTGCTAGGTGTTTGTGTAAATTCCCTGTTTTTTTTTTCTAATTTTGATTTTGATATGTTTCAGATTGTGAAGGAGACATGGGTATGTAAAAGGGGAAGAGTGAGTGACTATACAATTTACACTGGAGCTTTAGGAACTGCTTTTTTGTTATTTAAAGCTTACCAAGTTACTCTTGACAAGAATGATCTTGCTCTCTGTTCTGATATTATCAAGGCTTGTGACTCTGCTTCCCGTGGTTCTGGGTACACTCCCTTTGCAAAATTTCACTCTTTTTCCTATGATTTGAGCTAAAATTTGATTTGTGTTGTCTGAAGAAAGATGATAACTTTTTGGTATATGAACATATCTTCTGGTTTTAATTATCCTGCATGAGAAGTCATCTTAATCTTCATGATAAACAATGGCGACCAAAAACTATAACGGTGCTAAGTGTAAGTTCGATCCACATGAAAGGTGTAACGAACTGATCACTGTATTGGTGAGTTGCTCGGTTAATTAGACATGTCTGTGAAGATGACTGGATAAAAAAGACCCTATGAATAAGGAAATAGAAGGTAAAAAAGTTGAAGAGATGAAGAGGAAATTGATGCGTTTAGAAGGTTCTGTCCTTTTACATGGGTTGAGTATTAGGGAAAGCCATAGTCTGTTTTTATGTAACCTTAGTTCTAGTTTCAAGTTAAATGTTCTATATTTTTTGTGAGTTTTACTAAACCGTTCACTCAATAATCAAGTAATCTGTTAATATAAATCGGATAGGGAAGACCATGAAGTAAACTAGTTTCCGATCAGATGGGAGTAGACCTGTAAAAGTTGGTTGGATCCCTTGTAGATTGAGTGATGCGGTGGCGGTGGTCAAATGATCCGACCAGACAATCCAATCGAAGTTTCTGTTTCATGATCTCCTCCCACATAGAAACATGTTTTAGGCAAATTACATAACGAGAAGTTGAACTCTAATTTGTGAAACTGCAGGCGTGTGACTTTCATATGTGGACAAGCTGGTGTTTATTCTCTTGGTGCAGTTGTGGCCAAACAGAGCGGGGATGAACAATTGTGTGATCACTATCTGACGAAATTCAAAGAGGTTTTTTTTTTCATTGTTTCGAGCTTTTTCTGTTGATGTCAATAGTCTTCTCATTATCTATCTACAAATGCAGATTGAGCTTCCTAAAGATCTTCCAAATGAGTTGTTGTATGGGAGGGCTGGTTTCTTGTGGGCTTGTTCATTCTTAAACAAAAATATT</genome_strand>
        <mrna_strand>AATAAAGAAAAAAACTTACACTACCCCGGATAGACTTGCTCTGTTCTGTCTTCTGAGAACCACCGGAGCTCTGTTCTTTCCATAAATTTGTTCCGGCGGAGGATTCAACAGAACCGGAAATAAAGAGATGCCAGATCGTTTCTTTCCAAACACCATGCCTAGTTTTGTTGATGAAACTACAGTTAAAGAATCATTTCTTGAAGGAGCAAAAGATCCATTGTTAGAGCTTCTGTATTTGCCTTATGGTACTGTTTGCGACAAGCTCAAAAGGGTTGCTTTTGATCTCAAAGAAACG...........................................................................................ATTGTGAAGGAGACATGGGTATGTAAAAGGGGAAGAGTGAGTGACTATACAATTTACACTGGAGCTTTAGGAACTGCTTTTTTGTTATTTAAAGCTTACCAAGTTACTCTTGACAAGAATGATCTTGCTCTCTGTTCTGATATTATCAAGGCTTGTGACTCTGCTTCCCGTGGTTCTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGTGACTTTCATATGTGGACAAGCTGGTGTTTATTCTCTTGGTGCAGTTGTGGCCAAACAGAGCGGGGATGAACAATTGTGTGATCACTATCTGACGAAATTCAAAGAG.........................................................................ATTGAGCTTCCTAAAGATCTTCCAAATGAGTTGTTGTATGGGAGGGCTGGTTTCTTGTGGGCTTGTTCATTCTTAAACAAAAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-VAjcIY/lycopersicum_combined_unigene_seqs" ref_id="SGN-U320751" ref_strand="+" ref_description="SGN-U320751        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: | Symbol: None | regulator of chromosome condensation (RCC1) family protein, low similarity to UVB-resistance protein UVR8 (Arabidopsis thaliana) GI:5478530; contains Pfam profile PF00415: Regulator of chromosome condensation (RCC1) | chr3:5209027-5211752 FORWARD | Aliases: MJK13.9(evalue: 0, score=707) genbank/nr: gi|18400769|ref|NP_566512.1| expressed protein [Arabidopsis thaliana] gi|7021728|gb|AAF35409.1| unknown protein [Arabidopsis thaliana] gi|15795108|dbj|BAB02372.1| gene_id:MJK13.9~unknown protein [Arabidopsis thaliana] gi|23297250|gb|AAN12924.1| unknown protein [Arabidopsis thaliana](evalue: 0, score=707)">
      <seq>caaggacccctcaactcaattttcattcatagatccgatatttgctcaaatttgtgtttataaagttcctatctttgtggggttttggagttttttcttgtaatttggtagaaaaagagtttaattttgttttgtttgttcaagtttgtgttttggggttgttgtttcttgatgatttatttcgacttagattataagatttccccaccaagtccttcattttcttattcaatttcatcaaattttcttacatctgatattttcttgataaagtgtgttaattgtttccattttcgtataaaagattgtttttgtgaagggaaaatgggggatcgtttgaggtcaactttaatggaggatttgccagtacatttgattcttgaaatattgatgtgcggtcgattagctgttattgatttaataagtttagagctaacttcaaggacttttaggggaacacatggtttgtttcctaaaaagttcaagtctttggtagattatgctgcttttcagctttgtggattgagttcaatctatgcttctttgcattgtaatgctcaggaagagctgttgacgcgatgtaacggcaattggaagcgtcttttgaggttcttgatggctgtggaacagtcctctgatatggttgaaacttctgcaggcaatatgcaaataaggagtggcaggtatcacacactgctaatcaatgattcagcagcatactcttgtggttccagtttatgcggcgtccttggtcatgggcctgaaacaactcagtgtgtggaatttactcgaattagctttcctgttcccgtacaagttgcgcaagtttcagcttctcataatcatgctgcttttgtcacagggtctggacaggtgttcacatgtggagataactcatcattctgttgtgggcatagagacactggacgcccaatcttcaggccaagaatggttgaagcattgaaaaatattcctgtcaagcaggttgctgcaggtctcagttttactatgtttctcactaggaaaggtcatgttttcacatgcggaacgaacggacatggtcaacttggtcatggtgacacatcggataggccaacaccgacatgtatagaactactcgcatctattggttctgtagttcagattgctgctggacctagttatgcacttgcagtgtctgatgatgggactctatactcttttgtttcgggtactaatttctgccttggtcatggagaacagcagaatgaactccagccacgtgcaatccagtcgtttaagaggaagggcattaatgtggctcgtgtttctgctggagatgagcatgttgtggcactggattccactggatatgtatatacttgggggaaaggttattgcggtgcattggggcatggtgatgagactgataagactactccgtcacacttgaccagccttaagagccatctagcagttcaggtttgtgcaagcaagaggaaaacgtttgtccttgtggacgatggttctgtttatggctttggctggatgggttttggtagcctcggattccttgacagaggagcatcagataaagttttgaagcctcgtatcctggagagcttgagatcccatcacatatctcaaatcagcactggcttataccacacagtagttgttacaaattgtggacgagtctttggatttggagacaacgaaagagcccaacttggacatgatgcagtaaggggatgccttgaacctacagaaatgtttatggagaaagcaataagtacaaaatattgactgaccaaacaaatattgtttctacatcgttatataacatttcaaaaaatgacttgaatgttttgtgattagatcttttgtaaagaacttttttgttgtatgatacaaaaaagacaaatcatacattattgtcttctgaagttcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-iYHHn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="-" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="9804" stop="4614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9504" g_stop="8842" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="663" r_length="663" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8841" i_stop="8305" i_length="537">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8304" g_stop="8095" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="873" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8094" i_stop="7275" i_length="820">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7274" g_stop="7164" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="874" r_stop="984" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7163" i_stop="6171" i_length="993">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6170" g_stop="5802" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="985" r_stop="1353" r_length="369" r_score="0.997"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5801" i_stop="5676" i_length="126">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5675" g_stop="5568" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1354" r_stop="1461" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5567" i_stop="5388" i_length="180">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5387" g_stop="4914" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1462" r_stop="1935" r_length="474" r_score="0.994"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="4913" i_stop="4848" i_length="66">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4847" g_stop="4836" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1936" r_stop="1947" r_length="12" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="-" ref_id="SGN-U320751" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1947</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9504" e_stop="8842"/>
          <exon e_start="8304" e_stop="8095"/>
          <exon e_start="7274" e_stop="7164"/>
          <exon e_start="6170" e_stop="5802"/>
          <exon e_start="5675" e_stop="5568"/>
          <exon e_start="5387" e_stop="4914"/>
          <exon e_start="4847" e_stop="4836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGACCCCTCAACTCAATTTTCATTCATAGATCCGATATTTGCTCAAATTTGTGTTTATAAAGTTCCTATCTTTGTGGGGTTTTGGAGTTTTTTCTTGTAATTTGGTAGAAAAAGAGTTTAATTTTGTTTTGTTTGTTCAAGTTTGTGTTTTGGGGTTGTTGTTTCTTGATGATTTATTTCGACTTAGATTATAAGATTTCCCCACCAAGTCCTTCATTTTCTTATTCAATTTCATCAAATTTTCTTACATCTGATATTTTCTTGATAAAGTGTGTTAATTGTTTCCATTTTCGTATAAAAGATTGTTTTTGTGAAGGGAAAATGGGGGATCGTTTGAGGTCAACTTTAATGGAGGATTTGCCAGTACATTTGATTCTTGAAATATTGATGTGCGGTCGATTAGCTGTTATTGATTTAATAAGTTTAGAGCTAACTTCAAGGACTTTTAGGGGAACACATGGTTTGTTTCCTAAAAAGTTCAAGTCTTTGGTAGATTATGCTGCTTTTCAGCTTTGTGGATTGAGTTCAATCTATGCTTCTTTGCATTGTAATGCTCAGGAAGAGCTGTTGACGCGATGTAACGGCAATTGGAAGCGTCTTTTGAGGTTCTTGATGGCTGTGGAACAGTCCTCTGATATGGTTGAAACTTCTGCAGGCAATGTACTATTTCTTTGGAAAACTTGTTATTCGTTTATCAATGTTTACTTTGTTTGGTTGATTGCTATTTTTAGGACTAATAATATATGGTCGAAATGTTACTTATCAAATAGATGGATGAAATGTTTTCAGACACTATTTTTGTTGTTGTCAGTCAGATAGGGCCAAAAATGACACTTCTCGACCCCTTTTCGGCTTCTTCGTGTATTTACCTTATTGTATTTTGAACTCCTTAGTGAAAATTTGGACTCTTCAACTGGATGGAGCGCGTGATTCCTCTGCTTCACATATAGCAGTAGGTACTAGGCTATCTTTTTTTGTTTGGTTAAGGAATTGTATGTAAGGTTTAGTGAATTATTTAGTATTGCAATGAAATGGGACCAAATAGAATGGAATGGATAACGGTTTTATGATCGAGGTTTAGTTGCTGATTGATTTCTACCTTAATATTTCTAGATTTTAGTTACTCGCTTCTACTAGAATAGTCTGCAGCTAGGACTTCATCTTTTGTTATTACTTACTGTAAAAAGTTCTTGGCAGATGCAAATAAGGAGTGGCAGGTATCACACACTGCTAATCAATGATTCAGCAGCATACTCTTGTGGTTCCAGTTTATGCGGCGTCCTTGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTGTTCCCGTACAAGTTGCGCAAGTTTCAGCTTCTCATAATCATGCTGCTTTTGTCACAGGGTCTGGACAGGTTTGGCAATCGGCGTATATTATCAACTACTCTCATTTTTATTACAGTAATTTACCTTTTACGTGCACTTTGTTTTTTGCATGCATGATGTGGAAATCCTCGTTCTGTTGAGGAGTAAAGTAAAGAAGGTGAAAGAGGAAGAATGAAAATGGAGACAAGCAATCCAATCACATTTTCGTTTTTTTGGGAAATTATTTTAGGAGAGGTTCCTTTGGGAGACTGATACTAATATTGTTGAAATATATATTGACTTTGAAAAATGCAAGAACTGCCACACCATGCCACTCTGCAAAAAATAATTCTTACTATTTTAGTATGAGTTGGACCTAAAACTTACCGGCATGGTGTGGTCAATAAAATGGGGCTAACCTTAGAGACTATTAACAAAAAATACTCGGTGAATTCTTCCTATTTGCTTAAGCTTTAGTATACAATGTTAGTCGATACTTCTATGTTTCTATCTAAGTGCTGATCAAATACTTCTGCTCACTTTTTCCTATCCCTTCTGGGGAAAATCAGTCATCATTCTGCCAATTTGTAATGGCTAGTGCTACTGCAATAAAATAAGATAGAAAAAAAATTTATATTTCGAGCAGATTGATGCACCTTACGATGAGAGAGCCTCTCAAGTTTTGTACCGCTTAGACATATCCCTTACGAAAGTCCACAGTAGGTTGCAATATTCGAAGTGTGTTAGAGAATCATTCTCTGTTGTAAATATGCTAAAAACTGCCATGTTTTGTCTACTTCTACAACATAGAATGTATATACATACTATTGCATTTTATATTATTCATGAGGTTTACAATTCTTGGTATAGGTGTTCACATGTGGAGATAACTCATCATTCTGTTGTGGGCATAGAGACACTGGACGCCCAATCTTCAGGCCAAGAATGGTTGAAGCATTGAAAAATATTCCTGTCAAGCAGGTAAATTTCTTTCTATCACGTCATGCCATCTAATTGACGGGATTACCTCAATACATGTTACAGATTTGGATTCTTTTTTGATGTTGTTGTTTTTGTTGAAAACTGTAAGTTCAATAGAGATTGAGATTCTATACATGGTTTACGATTAAGTTGATCTTTTAGTTCTGCTAGATCAATTTATGGGAATAAATGATACTGCGTCAAAATTTATTTGTTTGTTTGGAGGAGTACTGGTTAAGAAAAAAATGATGTGATGATTTGAAATATCTGCAACTTAGGAGGATTTTAGAGTCTGCCAGGAATTTCTGGTCTCTCTTATCAAGACCAACTACGAAAGAAAATAGGGAACCGAAGGATAAACTCCACTAAGTTTTAATAGCATAATTCAAGCTGTGAATGACATAAACACCTTCTTGTTCCTATGTTTTATTGCAATAAGCTTTCTGTCATTTCTTGAAATGCTTTTTGATAAAATTGGATCGACAAGCCACTCTTGAATAAATGAAGGCTAAAAATGAAAACGAGGTATTTTTAAGAGTTAGGCAACACCTATGACATGTCCATTAGTTTTAGTTGCAAATTGGAAATACCATTGTAGGTGTTACGGTGCTAATGCAGATCTAATTGGTTCCCAGCAATGTGTATGTGATGCTCTTCTGCATTTTTTCATTGTCTGTAAATGTTTTGGGTTCGTTTATCTTTAAAATTGGGCTTAATTTTGTAGTATCTTTGAAAAAGTACTCTCTCCATTTCAATTTATTTGTCTGATTTTGATTTGACACGGATTTTAAGAAAGTAAGGAAGATTTTTGAATAGGATATATTGAATGTATTAAAATGTCCTTTAATCTTATGCCTTAAACATTCCATGTGGTAAAGTTGGAAATAAAGAGTTGCCTAACACGGAAAGAACATTCTCTTTTAGACATACTAAAACGTGAAGCTGTTAAGTTTTGTCATAATACATTGCTCACTACTGTTGGAACTGGTTCAGGTTGCTGCAGGTCTCAGTTTTACTATGTTTCTCACTAGGAAAGGTCATGTTTTCACATGCGGAACGAACGGACATGGTCAACTTGGTCATGGTGACACATCGGATAGGCCAACACCGACATGTATAGAACTACTCGCATCTATTGGTTCTGTAGTTCAGATTGCTGCTGGACCTAGTTATGCACTTGCAGTGTCTGATGATGGGACTCTATACTCTTTTGGTTCGGGTACTAATTTCTGCCTTGGTCATGGAGAACAGCAGAATGAACTCCAGCCACGTGCAATCCAGTCGTTTAAGAGGAAGGGCATTAATGTGGCTCGTGTTTCTGCTGGAGATGAGCATGTTGTGGCACTGGATTCCACTGGATATGTAAGTCATAGTACCTAAAAAATAACACGATATTATAATTTCATTTAAGATGTATGCTAAGAGTTGGTTAACTGCAGAAAAGAATAAAGTGCTGTCACGACTGATGATTGATTTTCGTGATTTCAGGTATATACTTGGGGGAAAGGTTATTGCGGTGCATTGGGGCATGGTGATGAGACTGATAAGACTACTCCGTCACACTTGACCAGCCTTAAGAGCCATCTAGCAGTTCAGGTCTGGCATTCTTTTACTTTTGCTAGTCGATATTACAAAGATCAGTATTAACATTTGGAAACATGAAATAACTCAAATTAGTGTATAACGCCAGTAATATGATACAAAGTAATTCAAGGCTTGTAACATACATAACAGTCTTCCTCGTCCTAGCTTAATTTTGCCTGCCTCTATTGGTAGGTTTGTGCAAGCAAGAGGAAAACGTTTGTCCTTGTGGACGATGGTTCTGTTTATGGCTTTGGCTGGATGGGTTTTGGTAGCCTCGGATTCCTTGACAGAGGAGCATCAGATAAAGTTTTGAAGCCTCGTATCCTGGAGAGCTTGAGATCCCATCACATATCTCAAATCAGCACTGGCTTATACCACACAGTAGTTGTTACAAATTGTGGACGAGTCTTTGGATTTGGAGACAACGAAAGAGCCCAACTTGGACATGATGCAGTAAGGGGATGCCTTGAACCTACAGAAATGTTTATGGAGAAAGCAATAAGTACAAAATATTGACTGACCAAACAAATATTGTTTCTACATCGTTATATAACATTTCAAAAAATGACTTGAATGTTTTGTGATTAGATCTTTTGTAAAGAACTTTTTTGTTGTATGATACAAAAAAGACAAATCATACATTATTGTCTTCTGAAGTTCATTACAGCCTCTTTCTCGTTCCAGCTACAGAAGAGCAGAAAACAACATTAGATCATAGGTACAATTTCTAACCAAAAAAAAAAA</genome_strand>
        <mrna_strand>CAAGGACCCCTCAACTCAATTTTCATTCATAGATCCGATATTTGCTCAAATTTGTGTTTATAAAGTTCCTATCTTTGTGGGGTTTTGGAGTTTTTTCTTGTAATTTGGTAGAAAAAGAGTTTAATTTTGTTTTGTTTGTTCAAGTTTGTGTTTTGGGGTTGTTGTTTCTTGATGATTTATTTCGACTTAGATTATAAGATTTCCCCACCAAGTCCTTCATTTTCTTATTCAATTTCATCAAATTTTCTTACATCTGATATTTTCTTGATAAAGTGTGTTAATTGTTTCCATTTTCGTATAAAAGATTGTTTTTGTGAAGGGAAAATGGGGGATCGTTTGAGGTCAACTTTAATGGAGGATTTGCCAGTACATTTGATTCTTGAAATATTGATGTGCGGTCGATTAGCTGTTATTGATTTAATAAGTTTAGAGCTAACTTCAAGGACTTTTAGGGGAACACATGGTTTGTTTCCTAAAAAGTTCAAGTCTTTGGTAGATTATGCTGCTTTTCAGCTTTGTGGATTGAGTTCAATCTATGCTTCTTTGCATTGTAATGCTCAGGAAGAGCTGTTGACGCGATGTAACGGCAATTGGAAGCGTCTTTTGAGGTTCTTGATGGCTGTGGAACAGTCCTCTGATATGGTTGAAACTTCTGCAGGCAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAAATAAGGAGTGGCAGGTATCACACACTGCTAATCAATGATTCAGCAGCATACTCTTGTGGTTCCAGTTTATGCGGCGTCCTTGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTGTTCCCGTACAAGTTGCGCAAGTTTCAGCTTCTCATAATCATGCTGCTTTTGTCACAGGGTCTGGACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCACATGTGGAGATAACTCATCATTCTGTTGTGGGCATAGAGACACTGGACGCCCAATCTTCAGGCCAAGAATGGTTGAAGCATTGAAAAATATTCCTGTCAAGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTGCAGGTCTCAGTTTTACTATGTTTCTCACTAGGAAAGGTCATGTTTTCACATGCGGAACGAACGGACATGGTCAACTTGGTCATGGTGACACATCGGATAGGCCAACACCGACATGTATAGAACTACTCGCATCTATTGGTTCTGTAGTTCAGATTGCTGCTGGACCTAGTTATGCACTTGCAGTGTCTGATGATGGGACTCTATACTCTTTTGTTTCGGGTACTAATTTCTGCCTTGGTCATGGAGAACAGCAGAATGAACTCCAGCCACGTGCAATCCAGTCGTTTAAGAGGAAGGGCATTAATGTGGCTCGTGTTTCTGCTGGAGATGAGCATGTTGTGGCACTGGATTCCACTGGATAT..............................................................................................................................GTATATACTTGGGGGAAAGGTTATTGCGGTGCATTGGGGCATGGTGATGAGACTGATAAGACTACTCCGTCACACTTGACCAGCCTTAAGAGCCATCTAGCAGTTCAG....................................................................................................................................................................................GTTTGTGCAAGCAAGAGGAAAACGTTTGTCCTTGTGGACGATGGTTCTGTTTATGGCTTTGGCTGGATGGGTTTTGGTAGCCTCGGATTCCTTGACAGAGGAGCATCAGATAAAGTTTTGAAGCCTCGTATCCTGGAGAGCTTGAGATCCCATCACATATCTCAAATCAGCACTGGCTTATACCACACAGTAGTTGTTACAAATTGTGGACGAGTCTTTGGATTTGGAGACAACGAAAGAGCCCAACTTGGACATGATGCAGTAAGGGGATGCCTTGAACCTACAGAAATGTTTATGGAGAAAGCAATAAGTACAAAATATTGACTGACCAAACAAATATTGTTTCTACATCGTTATATAACATTTCAAAAAATGACTTGAATGTTTTGTGATTAGATCTTTTGTAAAGAACTTTTTTGTTGTATGATACAAAAAAGACAAATCATACATTATTGTCTTCTGAAGTTCAAAAAA..................................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>4</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1769" PGL_stop="2292"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1769" e_stop="2292"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="1769" e_stop="2292" e_length="524"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1769" stop="2292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340168" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTGAGGTGAAATTTTTGTAATTTACTTTTCTATACAACTTATTAGAGTATGATAAGATAGAATGTTTCACGTTACCTTTTAACAATACATCATATGATAATACATCTACCTTACATAAAAAAGATTAACATAGCCAATTCTACAACCCACAACATGTTCATTCTGTATGTACAAAACTAGAGTGATTGTGTTCATTTTCTGTATGTACAAAACTAGAGTTCATAAGCAGGGAACCTTGTTTCTATTGGATCTATCATGTCGAAAAAGAGATAAGCCATTCCTCCCATTCCTTCAAACAACGAGTATGGACGATCACCTCCATGCATAACTCCCTCTGATATGAGTGTTTGAGCTCTAGTGTGCAGAAAGCACGCGAAGGCCTTTGCCTTGTACAAGTACTCAACTTTACCTGTCAAACGATACAGTGAAAGAAAGACATAGGAATTTCCACTAACACCGTGACATATTCCAACTCGTTTGAGTAAGCCTCGATTCCAAATCACCTCAGCTGCTTCTATAGCT</gDNA_template>
            <first_frame> F  *  G  E  I  F  V  I  Y  F  S  I  Q  L  I  R  V  *  *  D  R  M  F  H  V  T  F  *  Q  Y  I  I  *  *  Y  I  Y  L  T  *  K  R  L  T  *  P  I  L  Q  P  T  T  C  S  F  C  M  Y  K  T  R  V  I  V  F  I  F  C  M  Y  K  T  R  V  H  K  Q  G  T  L  F  L  L  D  L  S  C  R  K  R  D  K  P  F  L  P  F  L  Q  T  T  S  M  D  D  H  L  H  A  *  L  P  L  I  *  V  F  E  L  *  C  A  E  S  T  R  R  P  L  P  C  T  S  T  Q  L  Y  L  S  N  D  T  V  K  E  R  H  R  N  F  H  *  H  R  D  I  F  Q  L  V  *  V  S  L  D  S  K  S  P  Q  L  L  L  *   </first_frame>
            <second_frame>  F  E  V  K  F  L  *  F  T  F  L  Y  N  L  L  E  Y  D  K  I  E  C  F  T  L  P  F  N  N  T  S  Y  D  N  T  S  T  L  H  K  K  D  *  H  S  Q  F  Y  N  P  Q  H  V  H  S  V  C  T  K  L  E  *  L  C  S  F  S  V  C  T  K  L  E  F  I  S  R  E  P  C  F  Y  W  I  Y  H  V  E  K  E  I  S  H  S  S  H  S  F  K  Q  R  V  W  T  I  T  S  M  H  N  S  L  *  Y  E  C  L  S  S  S  V  Q  K  A  R  E  G  L  C  L  V  Q  V  L  N  F  T  C  Q  T  I  Q  *  K  K  D  I  G  I  S  T  N  T  V  T  Y  S  N  S  F  E  *  A  S  I  P  N  H  L  S  C  F  Y  S  </second_frame>
            <third_frame>   L  R  *  N  F  C  N  L  L  F  Y  T  T  Y  *  S  M  I  R  *  N  V  S  R  Y  L  L  T  I  H  H  M  I  I  H  L  P  Y  I  K  K  I  N  I  A  N  S  T  T  H  N  M  F  I  L  Y  V  Q  N  *  S  D  C  V  H  F  L  Y  V  Q  N  *  S  S  *  A  G  N  L  V  S  I  G  S  I  M  S  K  K  R  *  A  I  P  P  I  P  S  N  N  E  Y  G  R  S  P  P  C  I  T  P  S  D  M  S  V  *  A  L  V  C  R  K  H  A  K  A  F  A  L  Y  K  Y  S  T  L  P  V  K  R  Y  S  E  R  K  T  *  E  F  P  L  T  P  *  H  I  P  T  R  L  S  K  P  R  F  Q  I  T  S  A  A  S  I  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0129L05.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1904" stop="2098"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PILQPTTCSFCMYKTRVIVFIFCMYKTRVHKQGTLFLLDLSCRKRDKPFLPFLQTTSMDDHLHA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="4464" PGL_stop="2285"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4464" e_stop="4170"/>
            <exon e_start="4078" e_stop="3900"/>
            <exon e_start="3169" e_stop="3058"/>
            <exon e_start="2984" e_stop="2868"/>
            <exon e_start="2786" e_stop="2475"/>
            <exon e_start="2321" e_stop="2285"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.976" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.790" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.945" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4464" e_stop="4170" e_length="295"/>
          </exon>
          <intron i_serial="1" don_prob="0.976" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4169" i_stop="4079" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4078" e_stop="3900" e_length="179"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.983">
            <gDNA_intron_boundary i_start="3899" i_stop="3170" i_length="730"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="3169" e_stop="3058" e_length="112"/>
          </exon>
          <intron i_serial="3" don_prob="0.967" acc_prob="0.989">
            <gDNA_intron_boundary i_start="3057" i_stop="2985" i_length="73"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="2984" e_stop="2868" e_length="117"/>
          </exon>
          <intron i_serial="4" don_prob="0.790" acc_prob="0.996">
            <gDNA_intron_boundary i_start="2867" i_stop="2787" i_length="81"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="2786" e_stop="2475" e_length="312"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.945">
            <gDNA_intron_boundary i_start="2474" i_stop="2322" i_length="153"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="2321" e_stop="2285" e_length="37"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4464" stop="4170"/>
              <exon start="4078" stop="3900"/>
              <exon start="3169" stop="3058"/>
              <exon start="2984" stop="2898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2963" stop="2868"/>
              <exon start="2786" stop="2475"/>
              <exon start="2321" stop="2285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342178" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATAAAGAAAAAAACTTACACTACCCCGGATAGACTTGCTCTGTTCTGTCTTCTGAGAACCACCGGAGCTCTGTTCTTTCCATAAATTTGTTCCGGCGGAGGATTCAACAGAACCGGAAATAAAGAGATGCCAGATCGTTTCTTTCCAAACACCATGCCTAGTTTTGTTGATGAAACTACAGTTAAAGAATCATTTCTTGAAGGAGCAAAAGATCCATTGTTAGAGCTTCTGTATTTGCCTTATGGTACTGTTTGCGACAAGCTCAAAAGGGTTGCTTTTGATCTCAAAGAAACG : ATTGTGAAGGAGACATGGGTATGTAAAAGGGGAAGAGTGAGTGACTATACAATTTACACTGGAGCTTTAGGAACTGCTTTTTTGTTATTTAAAGCTTACCAAGTTACTCTTGACAAGAATGATCTTGCTCTCTGTTCTGATATTATCAAGGCTTGTGACTCTGCTTCCCGTGGTTCTGG : GCGTGTGACTTTCATATGTGGACAAGCTGGTGTTTATTCTCTTGGTGCAGTTGTGGCCAAACAGAGCGGGGATGAACAATTGTGTGATCACTATCTGACGAAATTCAAAGAG : ATTGAGCTTCCTAAAGATCTTCCAAATGAGTTGTTGTATGGGAGGGCTGGTTTCTTGTGGGCTTGTTCATTCTTAAACAAAAATATTGGTAGAGAAACAATATCTCCAACCCAAATT : CGAGCAGTTGTTGCTGAGGTTATAAAGTCCGGACGAAAAATGGGGAAAGGAAAATGTCCACTGATGTATGAATGGCATGGAAAAAGATACTGGGGTGCTGCTCATGGACTAGCTGGGATAATGCATGTACTTATGGACATGGAACTGAAAGCAGATGAGGTCGAGGATGTGAAGGCTACACTGCATTACATGATCCGAAATCGTTTTCCTAGTGGAAATTACCCCTCAAGTGAAGGAAGTGAATCTGACCGACTTGTGCATTGGTGTCATGGTGCTCCAGGTGTTGCCCTTACTCTAATCAAAGCAGCTAAG : GTTTTCAGCAATGACGAGTTTCTGCAGGCAGCTATAG</gDNA_template>
            <first_frame> N  K  E  K  N  L  H  Y  P  G  *  T  C  S  V  L  S  S  E  N  H  R  S  S  V  L  S  I  N  L  F  R  R  R  I  Q  Q  N  R  K  *  R  D  A  R  S  F  L  S  K  H  H  A  *  F  C  *  *  N  Y  S  *  R  I  I  S  *  R  S  K  R  S  I  V  R  A  S  V  F  A  L  W  Y  C  L  R  Q  A  Q  K  G  C  F  *  S  Q  R  N   : D  C  E  G  D  M  G  M  *  K  G  K  S  E  *  L  Y  N  L  H  W  S  F  R  N  C  F  F  V  I  *  S  L  P  S  Y  S  *  Q  E  *  S  C  S  L  F  *  Y  Y  Q  G  L  *  L  C  F  P  W  F  W  :  A  C  D  F  H  M  W  T  S  W  C  L  F  S  W  C  S  C  G  Q  T  E  R  G  *  T  I  V  *  S  L  S  D  E  I  Q  R   : D  *  A  S  *  R  S  S  K  *  V  V  V  W  E  G  W  F  L  V  G  L  F  I  L  K  Q  K  Y  W  *  R  N  N  I  S  N  P  N   : S  S  S  C  C  *  G  Y  K  V  R  T  K  N  G  E  R  K  M  S  T  D  V  *  M  A  W  K  K  I  L  G  C  C  S  W  T  S  W  D  N  A  C  T  Y  G  H  G  T  E  S  R  *  G  R  G  C  E  G  Y  T  A  L  H  D  P  K  S  F  S  *  W  K  L  P  L  K  *  R  K  *  I  *  P  T  C  A  L  V  S  W  C  S  R  C  C  P  Y  S  N  Q  S  S  *   : G  F  Q  Q  *  R  V  S  A  G  S  Y   </first_frame>
            <second_frame>  I  K  K  K  T  Y  T  T  P  D  R  L  A  L  F  C  L  L  R  T  T  G  A  L  F  F  P  *  I  C  S  G  G  G  F  N  R  T  G  N  K  E  M  P  D  R  F  F  P  N  T  M  P  S  F  V  D  E  T  T  V  K  E  S  F  L  E  G  A  K  D  P  L  L  E  L  L  Y  L  P  Y  G  T  V  C  D  K  L  K  R  V  A  F  D  L  K  E  T  :  I  V  K  E  T  W  V  C  K  R  G  R  V  S  D  Y  T  I  Y  T  G  A  L  G  T  A  F  L  L  F  K  A  Y  Q  V  T  L  D  K  N  D  L  A  L  C  S  D  I  I  K  A  C  D  S  A  S  R  G  S  G :   R  V  T  F  I  C  G  Q  A  G  V  Y  S  L  G  A  V  V  A  K  Q  S  G  D  E  Q  L  C  D  H  Y  L  T  K  F  K  E  :  I  E  L  P  K  D  L  P  N  E  L  L  Y  G  R  A  G  F  L  W  A  C  S  F  L  N  K  N  I  G  R  E  T  I  S  P  T  Q  I  :  R  A  V  V  A  E  V  I  K  S  G  R  K  M  G  K  G  K  C  P  L  M  Y  E  W  H  G  K  R  Y  W  G  A  A  H  G  L  A  G  I  M  H  V  L  M  D  M  E  L  K  A  D  E  V  E  D  V  K  A  T  L  H  Y  M  I  R  N  R  F  P  S  G  N  Y  P  S  S  E  G  S  E  S  D  R  L  V  H  W  C  H  G  A  P  G  V  A  L  T  L  I  K  A  A  K  :  V  F  S  N  D  E  F  L  Q  A  A  I  </second_frame>
            <third_frame>   *  R  K  K  L  T  L  P  R  I  D  L  L  C  S  V  F  *  E  P  P  E  L  C  S  F  H  K  F  V  P  A  E  D  S  T  E  P  E  I  K  R  C  Q  I  V  S  F  Q  T  P  C  L  V  L  L  M  K  L  Q  L  K  N  H  F  L  K  E  Q  K  I  H  C  *  S  F  C  I  C  L  M  V  L  F  A  T  S  S  K  G  L  L  L  I  S  K  K  R :   L  *  R  R  H  G  Y  V  K  G  E  E  *  V  T  I  Q  F  T  L  E  L  *  E  L  L  F  C  Y  L  K  L  T  K  L  L  L  T  R  M  I  L  L  S  V  L  I  L  S  R  L  V  T  L  L  P  V  V  L   : G  V  *  L  S  Y  V  D  K  L  V  F  I  L  L  V  Q  L  W  P  N  R  A  G  M  N  N  C  V  I  T  I  *  R  N  S  K  R :   L  S  F  L  K  I  F  Q  M  S  C  C  M  G  G  L  V  S  C  G  L  V  H  S  *  T  K  I  L  V  E  K  Q  Y  L  Q  P  K  F :   E  Q  L  L  L  R  L  *  S  P  D  E  K  W  G  K  E  N  V  H  *  C  M  N  G  M  E  K  D  T  G  V  L  L  M  D  *  L  G  *  C  M  Y  L  W  T  W  N  *  K  Q  M  R  S  R  M  *  R  L  H  C  I  T  *  S  E  I  V  F  L  V  E  I  T  P  Q  V  K  E  V  N  L  T  D  L  C  I  G  V  M  V  L  Q  V  L  P  L  L  *  S  K  Q  L  R :   F  S  A  M  T  S  F  C  R  Q  L  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0129L05.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4379" stop="4170"/>
                    <exon start="4078" stop="3900"/>
                    <exon start="3169" stop="3058"/>
                    <exon start="2984" stop="2868"/>
                    <exon start="2786" stop="2475"/>
                    <exon start="2321" stop="2286"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>966</number_coding_nucleotides>
                  <number_encoded_amino_acids>322</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICSGGGFNRTGNKEMPDRFFPNTMPSFVDETTVKESFLEGAKDPLLELLYLPYGTVCDKLKRVAFDLKETIVKETWVCKRGRVSDYTIYTGALGTAFLLFKAYQVTLDKNDLALCSDIIKACDSASRGSGRVTFICGQAGVYSLGAVVAKQSGDEQLCDHYLTKFKEIELPKDLPNELLYGRAGFLWACSFLNKNIGRETISPTQIRAVVAEVIKSGRKMGKGKCPLMYEWHGKRYWGAAHGLAGIMHVLMDMELKADEVEDVKATLHYMIRNRFPSGNYPSSEGSESDRLVHWCHGAPGVALTLIKAAKVFSNDEFLQAAI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="9504" PGL_stop="4836"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9504" e_stop="8842"/>
            <exon e_start="8304" e_stop="8095"/>
            <exon e_start="7274" e_stop="7164"/>
            <exon e_start="6170" e_stop="5802"/>
            <exon e_start="5675" e_stop="5568"/>
            <exon e_start="5387" e_stop="4914"/>
            <exon e_start="4847" e_stop="4836"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.877" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.985" e_score="0.997"/>
          <exon-intron don_prob="0.993" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.994"/>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9504" e_stop="8842" e_length="663"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.877">
            <gDNA_intron_boundary i_start="8841" i_stop="8305" i_length="537"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8304" e_stop="8095" e_length="210"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.966">
            <gDNA_intron_boundary i_start="8094" i_stop="7275" i_length="820"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7274" e_stop="7164" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.995">
            <gDNA_intron_boundary i_start="7163" i_stop="6171" i_length="993"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="6170" e_stop="5802" e_length="369"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.985">
            <gDNA_intron_boundary i_start="5801" i_stop="5676" i_length="126"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="5675" e_stop="5568" e_length="108"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.962">
            <gDNA_intron_boundary i_start="5567" i_stop="5388" i_length="180"/>
          </intron>
          <exon e_serial="6" e_score="0.994">
            <gDNA_exon_boundary e_start="5387" e_stop="4914" e_length="474"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="4913" i_stop="4848" i_length="66"/>
          </intron>
          <exon e_serial="7" e_score="0.917">
            <gDNA_exon_boundary e_start="4847" e_stop="4836" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9504" stop="8842"/>
              <exon start="8304" stop="8095"/>
              <exon start="7274" stop="7164"/>
              <exon start="6170" stop="5802"/>
              <exon start="5675" stop="5568"/>
              <exon start="5387" stop="4914"/>
              <exon start="4847" stop="4836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320751" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAGGACCCCTCAACTCAATTTTCATTCATAGATCCGATATTTGCTCAAATTTGTGTTTATAAAGTTCCTATCTTTGTGGGGTTTTGGAGTTTTTTCTTGTAATTTGGTAGAAAAAGAGTTTAATTTTGTTTTGTTTGTTCAAGTTTGTGTTTTGGGGTTGTTGTTTCTTGATGATTTATTTCGACTTAGATTATAAGATTTCCCCACCAAGTCCTTCATTTTCTTATTCAATTTCATCAAATTTTCTTACATCTGATATTTTCTTGATAAAGTGTGTTAATTGTTTCCATTTTCGTATAAAAGATTGTTTTTGTGAAGGGAAAATGGGGGATCGTTTGAGGTCAACTTTAATGGAGGATTTGCCAGTACATTTGATTCTTGAAATATTGATGTGCGGTCGATTAGCTGTTATTGATTTAATAAGTTTAGAGCTAACTTCAAGGACTTTTAGGGGAACACATGGTTTGTTTCCTAAAAAGTTCAAGTCTTTGGTAGATTATGCTGCTTTTCAGCTTTGTGGATTGAGTTCAATCTATGCTTCTTTGCATTGTAATGCTCAGGAAGAGCTGTTGACGCGATGTAACGGCAATTGGAAGCGTCTTTTGAGGTTCTTGATGGCTGTGGAACAGTCCTCTGATATGGTTGAAACTTCTGCAGGCAAT : ATGCAAATAAGGAGTGGCAGGTATCACACACTGCTAATCAATGATTCAGCAGCATACTCTTGTGGTTCCAGTTTATGCGGCGTCCTTGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTGTTCCCGTACAAGTTGCGCAAGTTTCAGCTTCTCATAATCATGCTGCTTTTGTCACAGGGTCTGGACAG : GTGTTCACATGTGGAGATAACTCATCATTCTGTTGTGGGCATAGAGACACTGGACGCCCAATCTTCAGGCCAAGAATGGTTGAAGCATTGAAAAATATTCCTGTCAAGCAG : GTTGCTGCAGGTCTCAGTTTTACTATGTTTCTCACTAGGAAAGGTCATGTTTTCACATGCGGAACGAACGGACATGGTCAACTTGGTCATGGTGACACATCGGATAGGCCAACACCGACATGTATAGAACTACTCGCATCTATTGGTTCTGTAGTTCAGATTGCTGCTGGACCTAGTTATGCACTTGCAGTGTCTGATGATGGGACTCTATACTCTTTTGGTTCGGGTACTAATTTCTGCCTTGGTCATGGAGAACAGCAGAATGAACTCCAGCCACGTGCAATCCAGTCGTTTAAGAGGAAGGGCATTAATGTGGCTCGTGTTTCTGCTGGAGATGAGCATGTTGTGGCACTGGATTCCACTGGATAT : GTATATACTTGGGGGAAAGGTTATTGCGGTGCATTGGGGCATGGTGATGAGACTGATAAGACTACTCCGTCACACTTGACCAGCCTTAAGAGCCATCTAGCAGTTCAG : GTTTGTGCAAGCAAGAGGAAAACGTTTGTCCTTGTGGACGATGGTTCTGTTTATGGCTTTGGCTGGATGGGTTTTGGTAGCCTCGGATTCCTTGACAGAGGAGCATCAGATAAAGTTTTGAAGCCTCGTATCCTGGAGAGCTTGAGATCCCATCACATATCTCAAATCAGCACTGGCTTATACCACACAGTAGTTGTTACAAATTGTGGACGAGTCTTTGGATTTGGAGACAACGAAAGAGCCCAACTTGGACATGATGCAGTAAGGGGATGCCTTGAACCTACAGAAATGTTTATGGAGAAAGCAATAAGTACAAAATATTGACTGACCAAACAAATATTGTTTCTACATCGTTATATAACATTTCAAAAAATGACTTGAATGTTTTGTGATTAGATCTTTTGTAAAGAACTTTTTTGTTGTATGATACAAAAAAGACAAATCATACATTATTGTCTTCTGAAGTTCATTACA : CAAAAAAAAAAA</gDNA_template>
            <first_frame> Q  G  P  L  N  S  I  F  I  H  R  S  D  I  C  S  N  L  C  L  *  S  S  Y  L  C  G  V  L  E  F  F  L  V  I  W  *  K  K  S  L  I  L  F  C  L  F  K  F  V  F  W  G  C  C  F  L  M  I  Y  F  D  L  D  Y  K  I  S  P  P  S  P  S  F  S  Y  S  I  S  S  N  F  L  T  S  D  I  F  L  I  K  C  V  N  C  F  H  F  R  I  K  D  C  F  C  E  G  K  M  G  D  R  L  R  S  T  L  M  E  D  L  P  V  H  L  I  L  E  I  L  M  C  G  R  L  A  V  I  D  L  I  S  L  E  L  T  S  R  T  F  R  G  T  H  G  L  F  P  K  K  F  K  S  L  V  D  Y  A  A  F  Q  L  C  G  L  S  S  I  Y  A  S  L  H  C  N  A  Q  E  E  L  L  T  R  C  N  G  N  W  K  R  L  L  R  F  L  M  A  V  E  Q  S  S  D  M  V  E  T  S  A  G  N  :  M  Q  I  R  S  G  R  Y  H  T  L  L  I  N  D  S  A  A  Y  S  C  G  S  S  L  C  G  V  L  G  H  G  P  E  T  T  Q  C  V  E  F  T  R  I  S  F  P  V  P  V  Q  V  A  Q  V  S  A  S  H  N  H  A  A  F  V  T  G  S  G  Q  :  V  F  T  C  G  D  N  S  S  F  C  C  G  H  R  D  T  G  R  P  I  F  R  P  R  M  V  E  A  L  K  N  I  P  V  K  Q  :  V  A  A  G  L  S  F  T  M  F  L  T  R  K  G  H  V  F  T  C  G  T  N  G  H  G  Q  L  G  H  G  D  T  S  D  R  P  T  P  T  C  I  E  L  L  A  S  I  G  S  V  V  Q  I  A  A  G  P  S  Y  A  L  A  V  S  D  D  G  T  L  Y  S  F  G  S  G  T  N  F  C  L  G  H  G  E  Q  Q  N  E  L  Q  P  R  A  I  Q  S  F  K  R  K  G  I  N  V  A  R  V  S  A  G  D  E  H  V  V  A  L  D  S  T  G  Y  :  V  Y  T  W  G  K  G  Y  C  G  A  L  G  H  G  D  E  T  D  K  T  T  P  S  H  L  T  S  L  K  S  H  L  A  V  Q  :  V  C  A  S  K  R  K  T  F  V  L  V  D  D  G  S  V  Y  G  F  G  W  M  G  F  G  S  L  G  F  L  D  R  G  A  S  D  K  V  L  K  P  R  I  L  E  S  L  R  S  H  H  I  S  Q  I  S  T  G  L  Y  H  T  V  V  V  T  N  C  G  R  V  F  G  F  G  D  N  E  R  A  Q  L  G  H  D  A  V  R  G  C  L  E  P  T  E  M  F  M  E  K  A  I  S  T  K  Y  *  L  T  K  Q  I  L  F  L  H  R  Y  I  T  F  Q  K  M  T  *  M  F  C  D  *  I  F  C  K  E  L  F  C  C  M  I  Q  K  R  Q  I  I  H  Y  C  L  L  K  F  I  T  :  Q  K  K  K </first_frame>
            <second_frame>  K  D  P  S  T  Q  F  S  F  I  D  P  I  F  A  Q  I  C  V  Y  K  V  P  I  F  V  G  F  W  S  F  F  L  *  F  G  R  K  R  V  *  F  C  F  V  C  S  S  L  C  F  G  V  V  V  S  *  *  F  I  S  T  *  I  I  R  F  P  H  Q  V  L  H  F  L  I  Q  F  H  Q  I  F  L  H  L  I  F  S  *  *  S  V  L  I  V  S  I  F  V  *  K  I  V  F  V  K  G  K  W  G  I  V  *  G  Q  L  *  W  R  I  C  Q  Y  I  *  F  L  K  Y  *  C  A  V  D  *  L  L  L  I  *  *  V  *  S  *  L  Q  G  L  L  G  E  H  M  V  C  F  L  K  S  S  S  L  W  *  I  M  L  L  F  S  F  V  D  *  V  Q  S  M  L  L  C  I  V  M  L  R  K  S  C  *  R  D  V  T  A  I  G  S  V  F  *  G  S  *  W  L  W  N  S  P  L  I  W  L  K  L  L  Q  A  I :   C  K  *  G  V  A  G  I  T  H  C  *  S  M  I  Q  Q  H  T  L  V  V  P  V  Y  A  A  S  L  V  M  G  L  K  Q  L  S  V  W  N  L  L  E  L  A  F  L  F  P  Y  K  L  R  K  F  Q  L  L  I  I  M  L  L  L  S  Q  G  L  D  R :   C  S  H  V  E  I  T  H  H  S  V  V  G  I  E  T  L  D  A  Q  S  S  G  Q  E  W  L  K  H  *  K  I  F  L  S  S  R :   L  L  Q  V  S  V  L  L  C  F  S  L  G  K  V  M  F  S  H  A  E  R  T  D  M  V  N  L  V  M  V  T  H  R  I  G  Q  H  R  H  V  *  N  Y  S  H  L  L  V  L  *  F  R  L  L  L  D  L  V  M  H  L  Q  C  L  M  M  G  L  Y  T  L  L  V  R  V  L  I  S  A  L  V  M  E  N  S  R  M  N  S  S  H  V  Q  S  S  R  L  R  G  R  A  L  M  W  L  V  F  L  L  E  M  S  M  L  W  H  W  I  P  L  D  M :   Y  I  L  G  G  K  V  I  A  V  H  W  G  M  V  M  R  L  I  R  L  L  R  H  T  *  P  A  L  R  A  I  *  Q  F  R :   F  V  Q  A  R  G  K  R  L  S  L  W  T  M  V  L  F  M  A  L  A  G  W  V  L  V  A  S  D  S  L  T  E  E  H  Q  I  K  F  *  S  L  V  S  W  R  A  *  D  P  I  T  Y  L  K  S  A  L  A  Y  T  T  Q  *  L  L  Q  I  V  D  E  S  L  D  L  E  T  T  K  E  P  N  L  D  M  M  Q  *  G  D  A  L  N  L  Q  K  C  L  W  R  K  Q  *  V  Q  N  I  D  *  P  N  K  Y  C  F  Y  I  V  I  *  H  F  K  K  *  L  E  C  F  V  I  R  S  F  V  K  N  F  F  V  V  *  Y  K  K  D  K  S  Y  I  I  V  F  *  S  S  L  H :   K  K  K   </second_frame>
            <third_frame>   R  T  P  Q  L  N  F  H  S  *  I  R  Y  L  L  K  F  V  F  I  K  F  L  S  L  W  G  F  G  V  F  S  C  N  L  V  E  K  E  F  N  F  V  L  F  V  Q  V  C  V  L  G  L  L  F  L  D  D  L  F  R  L  R  L  *  D  F  P  T  K  S  F  I  F  L  F  N  F  I  K  F  S  Y  I  *  Y  F  L  D  K  V  C  *  L  F  P  F  S  Y  K  R  L  F  L  *  R  E  N  G  G  S  F  E  V  N  F  N  G  G  F  A  S  T  F  D  S  *  N  I  D  V  R  S  I  S  C  Y  *  F  N  K  F  R  A  N  F  K  D  F  *  G  N  T  W  F  V  S  *  K  V  Q  V  F  G  R  L  C  C  F  S  A  L  W  I  E  F  N  L  C  F  F  A  L  *  C  S  G  R  A  V  D  A  M  *  R  Q  L  E  A  S  F  E  V  L  D  G  C  G  T  V  L  *  Y  G  *  N  F  C  R  Q   : Y  A  N  K  E  W  Q  V  S  H  T  A  N  Q  *  F  S  S  I  L  L  W  F  Q  F  M  R  R  P  W  S  W  A  *  N  N  S  V  C  G  I  Y  S  N  *  L  S  C  S  R  T  S  C  A  S  F  S  F  S  *  S  C  C  F  C  H  R  V  W  T   : G  V  H  M  W  R  *  L  I  I  L  L  W  A  *  R  H  W  T  P  N  L  Q  A  K  N  G  *  S  I  E  K  Y  S  C  Q  A   : G  C  C  R  S  Q  F  Y  Y  V  S  H  *  E  R  S  C  F  H  M  R  N  E  R  T  W  S  T  W  S  W  *  H  I  G  *  A  N  T  D  M  Y  R  T  T  R  I  Y  W  F  C  S  S  D  C  C  W  T  *  L  C  T  C  S  V  *  *  W  D  S  I  L  F  W  F  G  Y  *  F  L  P  W  S  W  R  T  A  E  *  T  P  A  T  C  N  P  V  V  *  E  E  G  H  *  C  G  S  C  F  C  W  R  *  A  C  C  G  T  G  F  H  W  I   : C  I  Y  L  G  E  R  L  L  R  C  I  G  A  W  *  *  D  *  *  D  Y  S  V  T  L  D  Q  P  *  E  P  S  S  S  S   : G  L  C  K  Q  E  E  N  V  C  P  C  G  R  W  F  C  L  W  L  W  L  D  G  F  W  *  P  R  I  P  *  Q  R  S  I  R  *  S  F  E  A  S  Y  P  G  E  L  E  I  P  S  H  I  S  N  Q  H  W  L  I  P  H  S  S  C  Y  K  L  W  T  S  L  W  I  W  R  Q  R  K  S  P  T  W  T  *  C  S  K  G  M  P  *  T  Y  R  N  V  Y  G  E  S  N  K  Y  K  I  L  T  D  Q  T  N  I  V  S  T  S  L  Y  N  I  S  K  N  D  L  N  V  L  *  L  D  L  L  *  R  T  F  L  L  Y  D  T  K  K  T  N  H  T  L  L  S  S  E  V  H  Y   : T  K  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0129L05.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9393" stop="8842"/>
                    <exon start="8304" stop="8095"/>
                    <exon start="7274" stop="7164"/>
                    <exon start="6170" stop="5802"/>
                    <exon start="5675" stop="5568"/>
                    <exon start="5387" stop="5064"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1671</number_coding_nucleotides>
                  <number_encoded_amino_acids>557</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKSLILFCLFKFVFWGCCFLMIYFDLDYKISPPSPSFSYSISSNFLTSDIFLIKCVNCFHFRIKDCFCEGKMGDRLRSTLMEDLPVHLILEILMCGRLAVIDLISLELTSRTFRGTHGLFPKKFKSLVDYAAFQLCGLSSIYASLHCNAQEELLTRCNGNWKRLLRFLMAVEQSSDMVETSAGNMQIRSGRYHTLLINDSAAYSCGSSLCGVLGHGPETTQCVEFTRISFPVPVQVAQVSASHNHAAFVTGSGQVFTCGDNSSFCCGHRDTGRPIFRPRMVEALKNIPVKQVAAGLSFTMFLTRKGHVFTCGTNGHGQLGHGDTSDRPTPTCIELLASIGSVVQIAAGPSYALAVSDDGTLYSFGSGTNFCLGHGEQQNELQPRAIQSFKRKGINVARVSAGDEHVVALDSTGYVYTWGKGYCGALGHGDETDKTTPSHLTSLKSHLAVQVCASKRKTFVLVDDGSVYGFGWMGFGSLGFLDRGASDKVLKPRILESLRSHHISQISTGLYHTVVVTNCGRVFGFGDNERAQLGHDAVRGCLEPTEMFMEKAISTKY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 5 chains have been computed
$ 
$ memory statistics:
$ 8880 bytes spliced alignments in total
$ 4 spliced alignments have been stored
$ 2220 bytes was the average size of a spliced alignment
$ 8232 bytes predicted gene locations in total
$ 3 predicted gene locations have been stored
$ 2744 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 5 backtrace matrices have been allocated
$ 
$ date finished: 2008-03-07 04:49:20
-->
