<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-11-22 16:50:18"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273238" ref_strand="+" ref_description="SGN-E273238 [cLEM-24-M15]">
      <seq>ttttttttttttttttttgtaatttacttttctatacaacttattagagtatgataagatagaatgtttcacgttaccttttaacaatacatcatatgataatacatctaccttacataaaaaagattaacatagccaattctacaacccacaacatgttcattctgtatgtacaaaactagagtgattgtgttcattttctgtatgtacaaaactagagttcataagcagggaaccttgtttctattggatctatcatgtcgaaaaagagataagccattcctcccattccttcaaacaacgagtatggacgatcacctccatgcataactccctctgatatgagtgtttgagctctagtgtgcagaaagcacgcgaaggcctttgccttgtacaagtactcaactttacctgtcaaacgatacagtgaaagaaagacataggaatttccactaacaccgtgacatattccaactcgtttgagtaagcctcgattccaaatcacctcagctgcttctatagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="+" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="1482" stop="2592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1769" g_stop="2292" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="+" ref_id="SGN-E273238" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1769" e_stop="2292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAGGTGAAATTTTTGTAATTTACTTTTCTATACAACTTATTAGAGTATGATAAGATAGAATGTTTCACGTTACCTTTTAACAATACATCATATGATAATACATCTACCTTACATAAAAAAGATTAACATAGCCAATTCTACAACCCACAACATGTTCATTCTGTATGTACAAAACTAGAGTGATTGTGTTCATTTTCTGTATGTACAAAACTAGAGTTCATAAGCAGGGAACCTTGTTTCTATTGGATCTATCATGTCGAAAAAGAGATAAGCCATTCCTCCCATTCCTTCAAACAACGAGTATGGACGATCACCTCCATGCATAACTCCCTCTGATATGAGTGTTTGAGCTCTAGTGTGCAGAAAGCACGCGAAGGCCTTTGCCTTGTACAAGTACTCAACTTTACCTGTCAAACGATACAGTGAAAGAAAGACATAGGAATTTCCACTAACACCGTGACATATTCCAACTCGTTTGAGTAAGCCTCGATTCCAAATCACCTCAGCTGCTTCTATAGCT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTGTAATTTACTTTTCTATACAACTTATTAGAGTATGATAAGATAGAATGTTTCACGTTACCTTTTAACAATACATCATATGATAATACATCTACCTTACATAAAAAAGATTAACATAGCCAATTCTACAACCCACAACATGTTCATTCTGTATGTACAAAACTAGAGTGATTGTGTTCATTTTCTGTATGTACAAAACTAGAGTTCATAAGCAGGGAACCTTGTTTCTATTGGATCTATCATGTCGAAAAAGAGATAAGCCATTCCTCCCATTCCTTCAAACAACGAGTATGGACGATCACCTCCATGCATAACTCCCTCTGATATGAGTGTTTGAGCTCTAGTGTGCAGAAAGCACGCGAAGGCCTTTGCCTTGTACAAGTACTCAACTTTACCTGTCAAACGATACAGTGAAAGAAAGACATAGGAATTTCCACTAACACCGTGACATATTCCAACTCGTTTGAGTAAGCCTCGATTCCAAATCACCTCAGCTGCTTCTATAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241430" ref_strand="+" ref_description="SGN-E241430 [cLED-28-L16]">
      <seq>ccaaatgagttgttgtatgggagggctggtttcttgtgggcttgggcattcttaaacaaaaatattggtagagaaacaatatctccaacccaaattcgagcagttgttgctgaggttataaagtccggacgaaaaatggggaaaggaaaatgtccactgatgtatgaatggcatggaaaaagatactggggtgctgctcatggactagctgggataatgcatgtacttatggacatggaactgaaagcagatgaggtcgaggatgtgaaggctacactgcattacatgatccgaaatcgttttcctagtggaaattacccctcaagtgaaggaagtgaatctgaccgacttgtgcattggtgtcatggtgctccaggtgttgcccttactctaatcaaagcagctaaggttttcagcaatgacgagtttctgcaggcagctatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="-" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="3263" stop="1985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2963" g_stop="2868" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2867" i_stop="2787" i_length="81">
            <donor d_prob="0.790" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2786" g_stop="2475" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="408" r_length="312" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2474" i_stop="2322" i_length="153">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2321" g_stop="2285" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="445" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="-" ref_id="SGN-E241430" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2963" e_stop="2868"/>
          <exon e_start="2786" e_stop="2475"/>
          <exon e_start="2321" e_stop="2285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATGAGTTGTTGTATGGGAGGGCTGGTTTCTTGTGGGCTTGTTCATTCTTAAACAAAAATATTGGTAGAGAAACAATATCTCCAACCCAAATTGTAAGAAACTTCACAAATTTCGATCACGTATGCTTCCTCATTATGAATGGCTCTTTATTTCTTCGGAATTTTTTTATGCAGCGAGCAGTTGTTGCTGAGGTTATAAAGTCCGGACGAAAAATGGGGAAAGGAAAATGTCCACTGATGTATGAATGGCATGGAAAAAGATACTGGGGTGCTGCTCATGGACTAGCTGGGATAATGCATGTACTTATGGACATGGAACTGAAAGCAGATGAGGTCGAGGATGTGAAGGCTACACTGCATTACATGATCCGAAATCGTTTTCCTAGTGGAAATTACCCCTCAAGTGAAGGAAGTGAATCTGACCGACTTGTGCATTGGTGTCATGGTGCTCCAGGTGTTGCCCTTACTCTAATCAAAGCAGCTAAGGTATGGACTATGGAGTAATACCTTGCACAGACACAGTAATCTTGATGTTAGTTCCTAATAGTTACTATATAAAACTCCTCAATCCGCGTAGACATGAGATGAAATGCGTGATCCTGGAAGGGCTTTCTGCTCATCATTGTCGTAACTTTTCAGGTTTTCAGCAATGACGAGTTTCTGCAGGCAGCTATAG</genome_strand>
        <mrna_strand>CCAAATGAGTTGTTGTATGGGAGGGCTGGTTTCTTGTGGGCTTGGGCATTCTTAAACAAAAATATTGGTAGAGAAACAATATCTCCAACCCAAATT.................................................................................CGAGCAGTTGTTGCTGAGGTTATAAAGTCCGGACGAAAAATGGGGAAAGGAAAATGTCCACTGATGTATGAATGGCATGGAAAAAGATACTGGGGTGCTGCTCATGGACTAGCTGGGATAATGCATGTACTTATGGACATGGAACTGAAAGCAGATGAGGTCGAGGATGTGAAGGCTACACTGCATTACATGATCCGAAATCGTTTTCCTAGTGGAAATTACCCCTCAAGTGAAGGAAGTGAATCTGACCGACTTGTGCATTGGTGTCATGGTGCTCCAGGTGTTGCCCTTACTCTAATCAAAGCAGCTAAG.........................................................................................................................................................GTTTTCAGCAATGACGAGTTTCTGCAGGCAGCTATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481905" ref_strand="+" ref_description="SGN-E481905 [cSTD-20-E21]">
      <seq>aaagaacttacactacctctaatagacttgctctgttctgtcttgtgagaaccaccagagctctgcagtttccagaatttgttccggcggaggattcaacagacctggaattaaagagatggcagatcgtttctttccaaacaccatgcctagttttgttgatgaaactacaattgaagaatcatttcttgaaggggcaaaagatccactgttggagcttctgtatttgccttatggtactgtttgcgagaagctcaaaagggttgcttttgatctcaaagaaacgattgtgaaggaaacatgggtatgtaaaaggggaagagtgagtgactatacagtttacactggagctttgggaactgcttttttgttatttaaagcttaccaagttactcgtgacaagaatgatcttgttctctgttctgatattatcaaggcttgcgactctgcttcccgcggttctgggcatgtgactttcatatgtggacaagctggtgtttattctcttggtgcagttgtggccaaacacaacggggatgaacaattgtgtgatcactatctgacaaaattcaaagagattgagcttcctaaagatcttccaaatgagttgttgtatgggagggctggtttcttgtgggcttgttcattcttaaacaaaatattggtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="-" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="4756" stop="2593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4456" g_stop="4170" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4169" i_stop="4079" i_length="91">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4078" g_stop="3900" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="465" r_length="179" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3899" i_stop="3170" i_length="730">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3169" g_stop="3058" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="577" r_length="112" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3057" i_stop="2985" i_length="73">
            <donor d_prob="0.967" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2984" g_stop="2893" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="668" r_length="91" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="-" ref_id="SGN-E481905" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E481905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4456" e_stop="4170"/>
          <exon e_start="4078" e_stop="3900"/>
          <exon e_start="3169" e_stop="3058"/>
          <exon e_start="2984" e_stop="2893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACTTACACTACCCCGGATAGACTTGCTCTGTTCTGTCTTCTGAGAACCACCGGAGCTCTGTTCTTTCCATAAATTTGTTCCGGCGGAGGATTCAACAGAACCGGAAATAAAGAGATGCCAGATCGTTTCTTTCCAAACACCATGCCTAGTTTTGTTGATGAAACTACAGTTAAAGAATCATTTCTTGAAGGAGCAAAAGATCCATTGTTAGAGCTTCTGTATTTGCCTTATGGTACTGTTTGCGACAAGCTCAAAAGGGTTGCTTTTGATCTCAAAGAAACGGTAATCACTTCTCTTGAGTATAGAGTGCCTGCTAGGTGTTTGTGTAAATTCCCTGTTTTTTTTTTCTAATTTTGATTTTGATATGTTTCAGATTGTGAAGGAGACATGGGTATGTAAAAGGGGAAGAGTGAGTGACTATACAATTTACACTGGAGCTTTAGGAACTGCTTTTTTGTTATTTAAAGCTTACCAAGTTACTCTTGACAAGAATGATCTTGCTCTCTGTTCTGATATTATCAAGGCTTGTGACTCTGCTTCCCGTGGTTCTGGGTACACTCCCTTTGCAAAATTTCACTCTTTTTCCTATGATTTGAGCTAAAATTTGATTTGTGTTGTCTGAAGAAAGATGATAACTTTTTGGTATATGAACATATCTTCTGGTTTTAATTATCCTGCATGAGAAGTCATCTTAATCTTCATGATAAACAATGGCGACCAAAAACTATAACGGTGCTAAGTGTAAGTTCGATCCACATGAAAGGTGTAACGAACTGATCACTGTATTGGTGAGTTGCTCGGTTAATTAGACATGTCTGTGAAGATGACTGGATAAAAAAGACCCTATGAATAAGGAAATAGAAGGTAAAAAAGTTGAAGAGATGAAGAGGAAATTGATGCGTTTAGAAGGTTCTGTCCTTTTACATGGGTTGAGTATTAGGGAAAGCCATAGTCTGTTTTTATGTAACCTTAGTTCTAGTTTCAAGTTAAATGTTCTATATTTTTTGTGAGTTTTACTAAACCGTTCACTCAATAATCAAGTAATCTGTTAATATAAATCGGATAGGGAAGACCATGAAGTAAACTAGTTTCCGATCAGATGGGAGTAGACCTGTAAAAGTTGGTTGGATCCCTTGTAGATTGAGTGATGCGGTGGCGGTGGTCAAATGATCCGACCAGACAATCCAATCGAAGTTTCTGTTTCATGATCTCCTCCCACATAGAAACATGTTTTAGGCAAATTACATAACGAGAAGTTGAACTCTAATTTGTGAAACTGCAGGCGTGTGACTTTCATATGTGGACAAGCTGGTGTTTATTCTCTTGGTGCAGTTGTGGCCAAACAGAGCGGGGATGAACAATTGTGTGATCACTATCTGACGAAATTCAAAGAGGTTTTTTTTTTCATTGTTTCGAGCTTTTTCTGTTGATGTCAATAGTCTTCTCATTATCTATCTACAAATGCAGATTGAGCTTCCTAAAGATCTTCCAAATGAGTTGTTGTATGGGAGGGCTGGTTTCTTGTGGGCTTGTTCATTCTTAAACAAAAATATTGGTAG</genome_strand>
        <mrna_strand>AAAGAACTTACACTACCTCTAATAGACTTGCTCTGTTCTGTCTTGTGAGAACCACCAGAGCTCTGCAGTTTCCA-GAATTTGTTCCGGCGGAGGATTCAACAGACCTGGAATTAAAGAGATGGCAGATCGTTTCTTTCCAAACACCATGCCTAGTTTTGTTGATGAAACTACAATTGAAGAATCATTTCTTGAAGGGGCAAAAGATCCACTGTTGGAGCTTCTGTATTTGCCTTATGGTACTGTTTGCGAGAAGCTCAAAAGGGTTGCTTTTGATCTCAAAGAAACG...........................................................................................ATTGTGAAGGAAACATGGGTATGTAAAAGGGGAAGAGTGAGTGACTATACAGTTTACACTGGAGCTTTGGGAACTGCTTTTTTGTTATTTAAAGCTTACCAAGTTACTCGTGACAAGAATGATCTTGTTCTCTGTTCTGATATTATCAAGGCTTGCGACTCTGCTTCCCGCGGTTCTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTGACTTTCATATGTGGACAAGCTGGTGTTTATTCTCTTGGTGCAGTTGTGGCCAAACACAACGGGGATGAACAATTGTGTGATCACTATCTGACAAAATTCAAAGAG.........................................................................ATTGAGCTTCCTAAAGATCTTCCAAATGAGTTGTTGTATGGGAGGGCTGGTTTCTTGTGGGCTTGTTCATTCTTAAAC-AAAATATTGGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249025" ref_strand="+" ref_description="SGN-E249025 [cLEF-49-C8]">
      <seq>ttctgttttctgagaaccaccggagctctgttctttccataaatttggggcggcttaggattcaacagaaccggaaataaagagatgccagatcgtttctttccaaacaccatgcctagttttgttgatgaaactacagttaaagaatcatttcttgaaggagcaaaagatccattgttagagcttctgtatttgccttatggtactgtttgcgacaagctcaaaagggttgcttttgatctcaaagaaacgattgtgaaggagacatgggtatgtaaaaggggaagagtgagtgactatacaatttacactggagctttaggaactgcttttttgttatttaaagcttaccaagttactcttgacaagaatgatcttgctctctgttctgatattatcaaggcttgtgactctgcttcccgtggttctgggcgtgtgactttcatatgtggacaagctggtgtttattctcttggtgcagttgtggccaaacagagcggggatgaacaattgtgtgatcactatctgacgaaattcaaagagattgagcttcctaaagatcttccaaatgagttgttgtatgggagggctggtttcttgtgggcttgttcattcttaaacaaaaatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="-" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="4721" stop="2598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4421" g_stop="4170" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4169" i_stop="4079" i_length="91">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4078" g_stop="3900" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="431" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3899" i_stop="3170" i_length="730">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3169" g_stop="3058" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="543" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3057" i_stop="2985" i_length="73">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2984" g_stop="2898" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="630" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="-" ref_id="SGN-E249025" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4421" e_stop="4170"/>
          <exon e_start="4078" e_stop="3900"/>
          <exon e_start="3169" e_stop="3058"/>
          <exon e_start="2984" e_stop="2898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGTCTTCTGAGAACCACCGGAGCTCTGTTCTTTCCATAAATTTGTTCCGGCGGAGGATTCAACAGAACCGGAAATAAAGAGATGCCAGATCGTTTCTTTCCAAACACCATGCCTAGTTTTGTTGATGAAACTACAGTTAAAGAATCATTTCTTGAAGGAGCAAAAGATCCATTGTTAGAGCTTCTGTATTTGCCTTATGGTACTGTTTGCGACAAGCTCAAAAGGGTTGCTTTTGATCTCAAAGAAACGGTAATCACTTCTCTTGAGTATAGAGTGCCTGCTAGGTGTTTGTGTAAATTCCCTGTTTTTTTTTTCTAATTTTGATTTTGATATGTTTCAGATTGTGAAGGAGACATGGGTATGTAAAAGGGGAAGAGTGAGTGACTATACAATTTACACTGGAGCTTTAGGAACTGCTTTTTTGTTATTTAAAGCTTACCAAGTTACTCTTGACAAGAATGATCTTGCTCTCTGTTCTGATATTATCAAGGCTTGTGACTCTGCTTCCCGTGGTTCTGGGTACACTCCCTTTGCAAAATTTCACTCTTTTTCCTATGATTTGAGCTAAAATTTGATTTGTGTTGTCTGAAGAAAGATGATAACTTTTTGGTATATGAACATATCTTCTGGTTTTAATTATCCTGCATGAGAAGTCATCTTAATCTTCATGATAAACAATGGCGACCAAAAACTATAACGGTGCTAAGTGTAAGTTCGATCCACATGAAAGGTGTAACGAACTGATCACTGTATTGGTGAGTTGCTCGGTTAATTAGACATGTCTGTGAAGATGACTGGATAAAAAAGACCCTATGAATAAGGAAATAGAAGGTAAAAAAGTTGAAGAGATGAAGAGGAAATTGATGCGTTTAGAAGGTTCTGTCCTTTTACATGGGTTGAGTATTAGGGAAAGCCATAGTCTGTTTTTATGTAACCTTAGTTCTAGTTTCAAGTTAAATGTTCTATATTTTTTGTGAGTTTTACTAAACCGTTCACTCAATAATCAAGTAATCTGTTAATATAAATCGGATAGGGAAGACCATGAAGTAAACTAGTTTCCGATCAGATGGGAGTAGACCTGTAAAAGTTGGTTGGATCCCTTGTAGATTGAGTGATGCGGTGGCGGTGGTCAAATGATCCGACCAGACAATCCAATCGAAGTTTCTGTTTCATGATCTCCTCCCACATAGAAACATGTTTTAGGCAAATTACATAACGAGAAGTTGAACTCTAATTTGTGAAACTGCAGGCGTGTGACTTTCATATGTGGACAAGCTGGTGTTTATTCTCTTGGTGCAGTTGTGGCCAAACAGAGCGGGGATGAACAATTGTGTGATCACTATCTGACGAAATTCAAAGAGGTTTTTTTTTTCATTGTTTCGAGCTTTTTCTGTTGATGTCAATAGTCTTCTCATTATCTATCTACAAATGCAGATTGAGCTTCCTAAAGATCTTCCAAATGAGTTGTTGTATGGGAGGGCTGGTTTCTTGTGGGCTTGTTCATTCTTAAACAAAAATATT</genome_strand>
        <mrna_strand>TTCTGTTTTCTGAGAACCACCGGAGCTCTGTTCTTTCCATAAATTTGGGGCGGCTTAGGATTCAACAGAACCGGAAATAAAGAGATGCCAGATCGTTTCTTTCCAAACACCATGCCTAGTTTTGTTGATGAAACTACAGTTAAAGAATCATTTCTTGAAGGAGCAAAAGATCCATTGTTAGAGCTTCTGTATTTGCCTTATGGTACTGTTTGCGACAAGCTCAAAAGGGTTGCTTTTGATCTCAAAGAAACG...........................................................................................ATTGTGAAGGAGACATGGGTATGTAAAAGGGGAAGAGTGAGTGACTATACAATTTACACTGGAGCTTTAGGAACTGCTTTTTTGTTATTTAAAGCTTACCAAGTTACTCTTGACAAGAATGATCTTGCTCTCTGTTCTGATATTATCAAGGCTTGTGACTCTGCTTCCCGTGGTTCTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGTGACTTTCATATGTGGACAAGCTGGTGTTTATTCTCTTGGTGCAGTTGTGGCCAAACAGAGCGGGGATGAACAATTGTGTGATCACTATCTGACGAAATTCAAAGAG.........................................................................ATTGAGCTTCCTAAAGATCTTCCAAATGAGTTGTTGTATGGGAGGGCTGGTTTCTTGTGGGCTTGTTCATTCTTAAACAAAAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369015" ref_strand="+" ref_description="SGN-E369015 [TUS-25-F7]">
      <seq>tctgtcttctgagaaccaccggagctctgttctttccataaatttgttccggcggaggattcaacagaaccggaaataaagagatgccagatcgtttctttccaaacaccatgcctagttttgttgatgaaactacagttaaagaatcatttcttgaaggagcaaaagatccattgttagagcttctgtatttgccttatggtactgtttgcgacaagctcaaaagggttgcttttgatctcaaagaaacgattgtgaaggagacatgggtatgtaaaaggggaagagtgagtgactatacaatttacactggagctttaggaactgcttttttgttatttaaagcttaccaagttactcttgacaagaatgatcttgctctctgttctgatattatcaaggcttgtgactctgcttcccgtggttctgggcgtgtgactttcatatgtggacaagctggtgtttattctcttggtgcagttgtggccaaacagagcggggatgaacaattgtgtgatcactatctgacgaaattcaaagagattgagcttcctaaagatcttccaaatgagttgttgtatgggagggctggtttcttgtgggcttgttcattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="-" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="4720" stop="2611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4420" g_stop="4170" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4169" i_stop="4079" i_length="91">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4078" g_stop="3900" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="430" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3899" i_stop="3170" i_length="730">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3169" g_stop="3058" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="542" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3057" i_stop="2985" i_length="73">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2984" g_stop="2911" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="616" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="-" ref_id="SGN-E369015" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4420" e_stop="4170"/>
          <exon e_start="4078" e_stop="3900"/>
          <exon e_start="3169" e_stop="3058"/>
          <exon e_start="2984" e_stop="2911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTCTTCTGAGAACCACCGGAGCTCTGTTCTTTCCATAAATTTGTTCCGGCGGAGGATTCAACAGAACCGGAAATAAAGAGATGCCAGATCGTTTCTTTCCAAACACCATGCCTAGTTTTGTTGATGAAACTACAGTTAAAGAATCATTTCTTGAAGGAGCAAAAGATCCATTGTTAGAGCTTCTGTATTTGCCTTATGGTACTGTTTGCGACAAGCTCAAAAGGGTTGCTTTTGATCTCAAAGAAACGGTAATCACTTCTCTTGAGTATAGAGTGCCTGCTAGGTGTTTGTGTAAATTCCCTGTTTTTTTTTTCTAATTTTGATTTTGATATGTTTCAGATTGTGAAGGAGACATGGGTATGTAAAAGGGGAAGAGTGAGTGACTATACAATTTACACTGGAGCTTTAGGAACTGCTTTTTTGTTATTTAAAGCTTACCAAGTTACTCTTGACAAGAATGATCTTGCTCTCTGTTCTGATATTATCAAGGCTTGTGACTCTGCTTCCCGTGGTTCTGGGTACACTCCCTTTGCAAAATTTCACTCTTTTTCCTATGATTTGAGCTAAAATTTGATTTGTGTTGTCTGAAGAAAGATGATAACTTTTTGGTATATGAACATATCTTCTGGTTTTAATTATCCTGCATGAGAAGTCATCTTAATCTTCATGATAAACAATGGCGACCAAAAACTATAACGGTGCTAAGTGTAAGTTCGATCCACATGAAAGGTGTAACGAACTGATCACTGTATTGGTGAGTTGCTCGGTTAATTAGACATGTCTGTGAAGATGACTGGATAAAAAAGACCCTATGAATAAGGAAATAGAAGGTAAAAAAGTTGAAGAGATGAAGAGGAAATTGATGCGTTTAGAAGGTTCTGTCCTTTTACATGGGTTGAGTATTAGGGAAAGCCATAGTCTGTTTTTATGTAACCTTAGTTCTAGTTTCAAGTTAAATGTTCTATATTTTTTGTGAGTTTTACTAAACCGTTCACTCAATAATCAAGTAATCTGTTAATATAAATCGGATAGGGAAGACCATGAAGTAAACTAGTTTCCGATCAGATGGGAGTAGACCTGTAAAAGTTGGTTGGATCCCTTGTAGATTGAGTGATGCGGTGGCGGTGGTCAAATGATCCGACCAGACAATCCAATCGAAGTTTCTGTTTCATGATCTCCTCCCACATAGAAACATGTTTTAGGCAAATTACATAACGAGAAGTTGAACTCTAATTTGTGAAACTGCAGGCGTGTGACTTTCATATGTGGACAAGCTGGTGTTTATTCTCTTGGTGCAGTTGTGGCCAAACAGAGCGGGGATGAACAATTGTGTGATCACTATCTGACGAAATTCAAAGAGGTTTTTTTTTTCATTGTTTCGAGCTTTTTCTGTTGATGTCAATAGTCTTCTCATTATCTATCTACAAATGCAGATTGAGCTTCCTAAAGATCTTCCAAATGAGTTGTTGTATGGGAGGGCTGGTTTCTTGTGGGCTTGTTCATTCTT</genome_strand>
        <mrna_strand>TCTGTCTTCTGAGAACCACCGGAGCTCTGTTCTTTCCATAAATTTGTTCCGGCGGAGGATTCAACAGAACCGGAAATAAAGAGATGCCAGATCGTTTCTTTCCAAACACCATGCCTAGTTTTGTTGATGAAACTACAGTTAAAGAATCATTTCTTGAAGGAGCAAAAGATCCATTGTTAGAGCTTCTGTATTTGCCTTATGGTACTGTTTGCGACAAGCTCAAAAGGGTTGCTTTTGATCTCAAAGAAACG...........................................................................................ATTGTGAAGGAGACATGGGTATGTAAAAGGGGAAGAGTGAGTGACTATACAATTTACACTGGAGCTTTAGGAACTGCTTTTTTGTTATTTAAAGCTTACCAAGTTACTCTTGACAAGAATGATCTTGCTCTCTGTTCTGATATTATCAAGGCTTGTGACTCTGCTTCCCGTGGTTCTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGTGACTTTCATATGTGGACAAGCTGGTGTTTATTCTCTTGGTGCAGTTGTGGCCAAACAGAGCGGGGATGAACAATTGTGTGATCACTATCTGACGAAATTCAAAGAG.........................................................................ATTGAGCTTCCTAAAGATCTTCCAAATGAGTTGTTGTATGGGAGGGCTGGTTTCTTGTGGGCTTGTTCATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E429092" ref_strand="+" ref_description="SGN-E429092 [STM-51-O4]">
      <seq>aaagaacttacactacctctaatagacttgctctgttctgtcttgtgagaaccaccagagctctgcagtttccagaatttgttccggcggaggattcaacagacctggaattaaagagatggcagatcgtttctttccaaacaccatgcctagttttgttgatgaaactacaattgaagaatcatttcttgaaggggcaaaagatccactgttggagcttctgtatttgccttatggtactgtttgcgagaagctcaaaagggttgcttttgatctcaaagaaacgattgtgaaggaaacatgggtatgtaaaaggggaagagtgagtgactatacagtttacactggagctttgggaactgcttttttgttatttaaagcttaccaagttactcgtgacaagaatgatcttgttctctgttctgatattatcaaggcttgcgactctgcttcccgcggttctgggcatgtgactttcatatgtggacaagctggtgtttattctcttggtgcagttgtggccaaacacaacggggatgaaccattgtgtgatcactatctgacaaaatttcaagagattgagcttcctaaagatcttccaaatgagttgttgtatgggagggctggtttcttgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="-" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="4756" stop="2625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4456" g_stop="4170" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4169" i_stop="4079" i_length="91">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4078" g_stop="3900" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="465" r_length="179" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3899" i_stop="3170" i_length="730">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3169" g_stop="3058" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="577" r_length="112" r_score="0.938"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3057" i_stop="2985" i_length="73">
            <donor d_prob="0.967" d_score="0.88"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2984" g_stop="2925" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="637" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="-" ref_id="SGN-E429092" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E429092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4456" e_stop="4170"/>
          <exon e_start="4078" e_stop="3900"/>
          <exon e_start="3169" e_stop="3058"/>
          <exon e_start="2984" e_stop="2925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACTTACACTACCCCGGATAGACTTGCTCTGTTCTGTCTTCTGAGAACCACCGGAGCTCTGTTCTTTCCATAAATTTGTTCCGGCGGAGGATTCAACAGAACCGGAAATAAAGAGATGCCAGATCGTTTCTTTCCAAACACCATGCCTAGTTTTGTTGATGAAACTACAGTTAAAGAATCATTTCTTGAAGGAGCAAAAGATCCATTGTTAGAGCTTCTGTATTTGCCTTATGGTACTGTTTGCGACAAGCTCAAAAGGGTTGCTTTTGATCTCAAAGAAACGGTAATCACTTCTCTTGAGTATAGAGTGCCTGCTAGGTGTTTGTGTAAATTCCCTGTTTTTTTTTTCTAATTTTGATTTTGATATGTTTCAGATTGTGAAGGAGACATGGGTATGTAAAAGGGGAAGAGTGAGTGACTATACAATTTACACTGGAGCTTTAGGAACTGCTTTTTTGTTATTTAAAGCTTACCAAGTTACTCTTGACAAGAATGATCTTGCTCTCTGTTCTGATATTATCAAGGCTTGTGACTCTGCTTCCCGTGGTTCTGGGTACACTCCCTTTGCAAAATTTCACTCTTTTTCCTATGATTTGAGCTAAAATTTGATTTGTGTTGTCTGAAGAAAGATGATAACTTTTTGGTATATGAACATATCTTCTGGTTTTAATTATCCTGCATGAGAAGTCATCTTAATCTTCATGATAAACAATGGCGACCAAAAACTATAACGGTGCTAAGTGTAAGTTCGATCCACATGAAAGGTGTAACGAACTGATCACTGTATTGGTGAGTTGCTCGGTTAATTAGACATGTCTGTGAAGATGACTGGATAAAAAAGACCCTATGAATAAGGAAATAGAAGGTAAAAAAGTTGAAGAGATGAAGAGGAAATTGATGCGTTTAGAAGGTTCTGTCCTTTTACATGGGTTGAGTATTAGGGAAAGCCATAGTCTGTTTTTATGTAACCTTAGTTCTAGTTTCAAGTTAAATGTTCTATATTTTTTGTGAGTTTTACTAAACCGTTCACTCAATAATCAAGTAATCTGTTAATATAAATCGGATAGGGAAGACCATGAAGTAAACTAGTTTCCGATCAGATGGGAGTAGACCTGTAAAAGTTGGTTGGATCCCTTGTAGATTGAGTGATGCGGTGGCGGTGGTCAAATGATCCGACCAGACAATCCAATCGAAGTTTCTGTTTCATGATCTCCTCCCACATAGAAACATGTTTTAGGCAAATTACATAACGAGAAGTTGAACTCTAATTTGTGAAACTGCAGGCGTGTGACTTTCATATGTGGACAAGCTGGTGTTTATTCTCTTGGTGCAGTTGTGGCCAAACAGAGCGGGGATGAACAATTGTGTGATCACTATCTGACGAAATTCAAAGAGGTTTTTTTTTTCATTGTTTCGAGCTTTTTCTGTTGATGTCAATAGTCTTCTCATTATCTATCTACAAATGCAGATTGAGCTTCCTAAAGATCTTCCAAATGAGTTGTTGTATGGGAGGGCTGGTTTCTTGTGG</genome_strand>
        <mrna_strand>AAAGAACTTACACTACCTCTAATAGACTTGCTCTGTTCTGTCTTGTGAGAACCACCAGAGCTCTGCAGTTTCCA-GAATTTGTTCCGGCGGAGGATTCAACAGACCTGGAATTAAAGAGATGGCAGATCGTTTCTTTCCAAACACCATGCCTAGTTTTGTTGATGAAACTACAATTGAAGAATCATTTCTTGAAGGGGCAAAAGATCCACTGTTGGAGCTTCTGTATTTGCCTTATGGTACTGTTTGCGAGAAGCTCAAAAGGGTTGCTTTTGATCTCAAAGAAACG...........................................................................................ATTGTGAAGGAAACATGGGTATGTAAAAGGGGAAGAGTGAGTGACTATACAGTTTACACTGGAGCTTTGGGAACTGCTTTTTTGTTATTTAAAGCTTACCAAGTTACTCGTGACAAGAATGATCTTGTTCTCTGTTCTGATATTATCAAGGCTTGCGACTCTGCTTCCCGCGGTTCTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTGACTTTCATATGTGGACAAGCTGGTGTTTATTCTCTTGGTGCAGTTGTGGCCAAACACAACGGGGATGAACCATTGTGTGATCACTATCTGACAAAATTTCAAGAG.........................................................................ATTGAGCTTCCTAAAGATCTTCCAAATGAGTTGTTGTATGGGAGGGCTGGTTTCTTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287225" ref_strand="+" ref_description="SGN-E287225 [cLES-6-P10]">
      <seq>aaacttacactaccccggatagacttgctctgttctgtcttctgagaaccaccggagctctgttctttccataaatttgttccggcggaggattcaacagaaccggaaataaagagatgccagatcgtttctttccaaacaccatgcctagttttgttgatgaaactacagttaaagaatcatttcttgaaggagcaaaagatccattgttagagcttctgtatttgccttatggtactgtttgcgacaagctcaaaagggttgcttttgatctcaaagaaacgattgtgaaggagacatgggtatgtaaaaggggaagagtgagtgactatacaatttacactggagctttaggaactgcttttttgttatttaaagcttaccaagttactcttgacaagaatgatcttgctctctgttctgatattatcaaggcttgtgactctgcttcccgtggttctgggcgtgtgactttcatatgtggacaagctggtgtttattctcttggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="-" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="4753" stop="2823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4453" g_stop="4170" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4169" i_stop="4079" i_length="91">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4078" g_stop="3900" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="463" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3899" i_stop="3170" i_length="730">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3169" g_stop="3123" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="510" r_length="47" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="-" ref_id="SGN-E287225" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4453" e_stop="4170"/>
          <exon e_start="4078" e_stop="3900"/>
          <exon e_start="3169" e_stop="3123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTACACTACCCCGGATAGACTTGCTCTGTTCTGTCTTCTGAGAACCACCGGAGCTCTGTTCTTTCCATAAATTTGTTCCGGCGGAGGATTCAACAGAACCGGAAATAAAGAGATGCCAGATCGTTTCTTTCCAAACACCATGCCTAGTTTTGTTGATGAAACTACAGTTAAAGAATCATTTCTTGAAGGAGCAAAAGATCCATTGTTAGAGCTTCTGTATTTGCCTTATGGTACTGTTTGCGACAAGCTCAAAAGGGTTGCTTTTGATCTCAAAGAAACGGTAATCACTTCTCTTGAGTATAGAGTGCCTGCTAGGTGTTTGTGTAAATTCCCTGTTTTTTTTTTCTAATTTTGATTTTGATATGTTTCAGATTGTGAAGGAGACATGGGTATGTAAAAGGGGAAGAGTGAGTGACTATACAATTTACACTGGAGCTTTAGGAACTGCTTTTTTGTTATTTAAAGCTTACCAAGTTACTCTTGACAAGAATGATCTTGCTCTCTGTTCTGATATTATCAAGGCTTGTGACTCTGCTTCCCGTGGTTCTGGGTACACTCCCTTTGCAAAATTTCACTCTTTTTCCTATGATTTGAGCTAAAATTTGATTTGTGTTGTCTGAAGAAAGATGATAACTTTTTGGTATATGAACATATCTTCTGGTTTTAATTATCCTGCATGAGAAGTCATCTTAATCTTCATGATAAACAATGGCGACCAAAAACTATAACGGTGCTAAGTGTAAGTTCGATCCACATGAAAGGTGTAACGAACTGATCACTGTATTGGTGAGTTGCTCGGTTAATTAGACATGTCTGTGAAGATGACTGGATAAAAAAGACCCTATGAATAAGGAAATAGAAGGTAAAAAAGTTGAAGAGATGAAGAGGAAATTGATGCGTTTAGAAGGTTCTGTCCTTTTACATGGGTTGAGTATTAGGGAAAGCCATAGTCTGTTTTTATGTAACCTTAGTTCTAGTTTCAAGTTAAATGTTCTATATTTTTTGTGAGTTTTACTAAACCGTTCACTCAATAATCAAGTAATCTGTTAATATAAATCGGATAGGGAAGACCATGAAGTAAACTAGTTTCCGATCAGATGGGAGTAGACCTGTAAAAGTTGGTTGGATCCCTTGTAGATTGAGTGATGCGGTGGCGGTGGTCAAATGATCCGACCAGACAATCCAATCGAAGTTTCTGTTTCATGATCTCCTCCCACATAGAAACATGTTTTAGGCAAATTACATAACGAGAAGTTGAACTCTAATTTGTGAAACTGCAGGCGTGTGACTTTCATATGTGGACAAGCTGGTGTTTATTCTCTTGGTG</genome_strand>
        <mrna_strand>AAACTTACACTACCCCGGATAGACTTGCTCTGTTCTGTCTTCTGAGAACCACCGGAGCTCTGTTCTTTCCATAAATTTGTTCCGGCGGAGGATTCAACAGAACCGGAAATAAAGAGATGCCAGATCGTTTCTTTCCAAACACCATGCCTAGTTTTGTTGATGAAACTACAGTTAAAGAATCATTTCTTGAAGGAGCAAAAGATCCATTGTTAGAGCTTCTGTATTTGCCTTATGGTACTGTTTGCGACAAGCTCAAAAGGGTTGCTTTTGATCTCAAAGAAACG...........................................................................................ATTGTGAAGGAGACATGGGTATGTAAAAGGGGAAGAGTGAGTGACTATACAATTTACACTGGAGCTTTAGGAACTGCTTTTTTGTTATTTAAAGCTTACCAAGTTACTCTTGACAAGAATGATCTTGCTCTCTGTTCTGATATTATCAAGGCTTGTGACTCTGCTTCCCGTGGTTCTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGTGACTTTCATATGTGGACAAGCTGGTGTTTATTCTCTTGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301425" ref_strand="+" ref_description="SGN-E301425 [cLEX-8-I4]">
      <seq>aataaagaaaaaaacttacactaccccggatagacttgctctgttctgtcttctgagaaccaccggagctctgttctttccataaatttgttccggcggaggattcaacagaaccggaaataaagagatgccagatcgtttctttccaaacaccatgcctagttttgttgatgaaactacagttaaagaatcatttcttgaaggagcaaaagatccattgttagagcttctgtatttgccttatggtactgtttgcgacaagctcaaaagggttgcttttgatctcaaagaaacgattgtgaaggagacatgggtatgtaaaaggggaagagtgagtgactatacaatttacactggagctttaggaactgcttttttgttatttaaagcttaccaagttactcttgacaagaatgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="-" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="4764" stop="3655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4464" g_stop="4170" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4169" i_stop="4079" i_length="91">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4078" g_stop="3955" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="419" r_length="124" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="-" ref_id="SGN-E301425" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4464" e_stop="4170"/>
          <exon e_start="4078" e_stop="3955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAAGAAAAAAACTTACACTACCCCGGATAGACTTGCTCTGTTCTGTCTTCTGAGAACCACCGGAGCTCTGTTCTTTCCATAAATTTGTTCCGGCGGAGGATTCAACAGAACCGGAAATAAAGAGATGCCAGATCGTTTCTTTCCAAACACCATGCCTAGTTTTGTTGATGAAACTACAGTTAAAGAATCATTTCTTGAAGGAGCAAAAGATCCATTGTTAGAGCTTCTGTATTTGCCTTATGGTACTGTTTGCGACAAGCTCAAAAGGGTTGCTTTTGATCTCAAAGAAACGGTAATCACTTCTCTTGAGTATAGAGTGCCTGCTAGGTGTTTGTGTAAATTCCCTGTTTTTTTTTTCTAATTTTGATTTTGATATGTTTCAGATTGTGAAGGAGACATGGGTATGTAAAAGGGGAAGAGTGAGTGACTATACAATTTACACTGGAGCTTTAGGAACTGCTTTTTTGTTATTTAAAGCTTACCAAGTTACTCTTGACAAGAATGATC</genome_strand>
        <mrna_strand>AATAAAGAAAAAAACTTACACTACCCCGGATAGACTTGCTCTGTTCTGTCTTCTGAGAACCACCGGAGCTCTGTTCTTTCCATAAATTTGTTCCGGCGGAGGATTCAACAGAACCGGAAATAAAGAGATGCCAGATCGTTTCTTTCCAAACACCATGCCTAGTTTTGTTGATGAAACTACAGTTAAAGAATCATTTCTTGAAGGAGCAAAAGATCCATTGTTAGAGCTTCTGTATTTGCCTTATGGTACTGTTTGCGACAAGCTCAAAAGGGTTGCTTTTGATCTCAAAGAAACG...........................................................................................ATTGTGAAGGAGACATGGGTATGTAAAAGGGGAAGAGTGAGTGACTATACAATTTACACTGGAGCTTTAGGAACTGCTTTTTTGTTATTTAAAGCTTACCAAGTTACTCTTGACAAGAATGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367971" ref_strand="+" ref_description="SGN-E367971 [TUS-22-N3](-)">
      <seq>caatccagtcgtttaagaggaagggcaataatgtggctcgtgtttctgctggagatgagcatgttgtggcactggattccactggatatgtatatacttgggggaaaggttattgcggtgcattggggcatggtgatgagactgataagactactccgtcacacttgaccagccttaagagccatctagcagttcaggtttgtgcaagcaagaggaaaacgtttgtccttgtggacgatggttctgtttatggctttggctggatgggttttggtagcctcggattccttgacagaggagcatcagataaagttttgaagcctcgtatcctggagagcttgagatcccatcacatatctcaaatcagcactggcttataccacacagtagttgttacaaattgtggacgagtctttggatttggagacaacgaaagagcccaacttggacatgatgcagtaaggggatgccttgaacctacagaaatgtttatggagaaagcaataagtacaaaatattgactgaccaaacaaatattgtttctacatcgttatataacatttcaaaaaatgacttgaatgttttgtgattagatcttttgtaaagaacttttttgttgtatgatacaaaaaagacaaatcatacattattgtcttctgaagttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="-" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="6190" stop="4614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5890" g_stop="5802" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5801" i_stop="5676" i_length="126">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5675" g_stop="5568" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="197" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5567" i_stop="5388" i_length="180">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5387" g_stop="4914" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="671" r_length="474" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4913" i_stop="4848" i_length="66">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4847" g_stop="4836" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="683" r_length="12" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="-" ref_id="SGN-E367971" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5890" e_stop="5802"/>
          <exon e_start="5675" e_stop="5568"/>
          <exon e_start="5387" e_stop="4914"/>
          <exon e_start="4847" e_stop="4836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCCAGTCGTTTAAGAGGAAGGGCATTAATGTGGCTCGTGTTTCTGCTGGAGATGAGCATGTTGTGGCACTGGATTCCACTGGATATGTAAGTCATAGTACCTAAAAAATAACACGATATTATAATTTCATTTAAGATGTATGCTAAGAGTTGGTTAACTGCAGAAAAGAATAAAGTGCTGTCACGACTGATGATTGATTTTCGTGATTTCAGGTATATACTTGGGGGAAAGGTTATTGCGGTGCATTGGGGCATGGTGATGAGACTGATAAGACTACTCCGTCACACTTGACCAGCCTTAAGAGCCATCTAGCAGTTCAGGTCTGGCATTCTTTTACTTTTGCTAGTCGATATTACAAAGATCAGTATTAACATTTGGAAACATGAAATAACTCAAATTAGTGTATAACGCCAGTAATATGATACAAAGTAATTCAAGGCTTGTAACATACATAACAGTCTTCCTCGTCCTAGCTTAATTTTGCCTGCCTCTATTGGTAGGTTTGTGCAAGCAAGAGGAAAACGTTTGTCCTTGTGGACGATGGTTCTGTTTATGGCTTTGGCTGGATGGGTTTTGGTAGCCTCGGATTCCTTGACAGAGGAGCATCAGATAAAGTTTTGAAGCCTCGTATCCTGGAGAGCTTGAGATCCCATCACATATCTCAAATCAGCACTGGCTTATACCACACAGTAGTTGTTACAAATTGTGGACGAGTCTTTGGATTTGGAGACAACGAAAGAGCCCAACTTGGACATGATGCAGTAAGGGGATGCCTTGAACCTACAGAAATGTTTATGGAGAAAGCAATAAGTACAAAATATTGACTGACCAAACAAATATTGTTTCTACATCGTTATATAACATTTCAAAAAATGACTTGAATGTTTTGTGATTAGATCTTTTGTAAAGAACTTTTTTGTTGTATGATACAAAAAAGACAAATCATACATTATTGTCTTCTGAAGTTCATTACAGCCTCTTTCTCGTTCCAGCTACAGAAGAGCAGAAAACAACATTAGATCATAGGTACAATTTCTAACCAAAAAAAAAAA</genome_strand>
        <mrna_strand>CAATCCAGTCGTTTAAGAGGAAGGGCAATAATGTGGCTCGTGTTTCTGCTGGAGATGAGCATGTTGTGGCACTGGATTCCACTGGATAT..............................................................................................................................GTATATACTTGGGGGAAAGGTTATTGCGGTGCATTGGGGCATGGTGATGAGACTGATAAGACTACTCCGTCACACTTGACCAGCCTTAAGAGCCATCTAGCAGTTCAG....................................................................................................................................................................................GTTTGTGCAAGCAAGAGGAAAACGTTTGTCCTTGTGGACGATGGTTCTGTTTATGGCTTTGGCTGGATGGGTTTTGGTAGCCTCGGATTCCTTGACAGAGGAGCATCAGATAAAGTTTTGAAGCCTCGTATCCTGGAGAGCTTGAGATCCCATCACATATCTCAAATCAGCACTGGCTTATACCACACAGTAGTTGTTACAAATTGTGGACGAGTCTTTGGATTTGGAGACAACGAAAGAGCCCAACTTGGACATGATGCAGTAAGGGGATGCCTTGAACCTACAGAAATGTTTATGGAGAAAGCAATAAGTACAAAATATTGACTGACCAAACAAATATTGTTTCTACATCGTTATATAACATTTCAAAAAATGACTTGAATGTTTTGTGATTAGATCTTTTGTAAAGAACTTTTTTGTTGTATGATACAAAAAAGACAAATCATACATTATTGTCTTCTGAAGTTAAAAAAA..................................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542727" ref_strand="+" ref_description="SGN-E542727 [TUS-64-C21](-)">
      <seq>ctcgcatctattggttctgtagttcagattgctgctggacctagttatgcacttgcagtgtctgatgatgggactctatactcttttgtttcgggtactaatttctgccttggtcatggagaacagcagaatgaactccagccacgtgcaatccagtcgtttaagaggaagggcattaatgtggctcgtgtttctgctggagatgagcatgttgtggcactggattccactggatatgtatatacttgggggaaaggttattgcggtgcattggggcatggtgatgagactgataagactactccgtcacacttgaccagccttaagagccatctagcagttcaggtttgtgcaagcaagaggaaaacgtttgtccttgtggacgatggttctgtttatggctttggctggatgggttttggtagcctcggattccttgacagaggagcatcagataaagttttgaagcctcgtatcctggagagcttgagatcccatcacatatctcaaatcagcactggcttataccacacagtagttgttacaaattgtggacgagtctttggatttggagacaacgaaagagcccaacttggacatgatgcagtaaggggatgccttgaacctacagaaatgtttatggagaaagcaataagtacaaaatattgactgaccaaacaaatattgtttctacatcgttatataacatttcaaaaaatgacttgaatgttttgtgattagatcttttgtaaagaacttttttgttgtatgatacaaaaaagacanaatcatacattattgtcttctgaagttaaaaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="-" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="6338" stop="4614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6038" g_stop="5802" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5801" i_stop="5676" i_length="126">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5675" g_stop="5568" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="345" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5567" i_stop="5388" i_length="180">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5387" g_stop="4920" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="814" r_length="469" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="815" polyA_stop="833"/>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="-" ref_id="SGN-E542727" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6038" e_stop="5802"/>
          <exon e_start="5675" e_stop="5568"/>
          <exon e_start="5387" e_stop="4920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCATCTATTGGTTCTGTAGTTCAGATTGCTGCTGGACCTAGTTATGCACTTGCAGTGTCTGATGATGGGACTCTATACTCTTTTGGTTCGGGTACTAATTTCTGCCTTGGTCATGGAGAACAGCAGAATGAACTCCAGCCACGTGCAATCCAGTCGTTTAAGAGGAAGGGCATTAATGTGGCTCGTGTTTCTGCTGGAGATGAGCATGTTGTGGCACTGGATTCCACTGGATATGTAAGTCATAGTACCTAAAAAATAACACGATATTATAATTTCATTTAAGATGTATGCTAAGAGTTGGTTAACTGCAGAAAAGAATAAAGTGCTGTCACGACTGATGATTGATTTTCGTGATTTCAGGTATATACTTGGGGGAAAGGTTATTGCGGTGCATTGGGGCATGGTGATGAGACTGATAAGACTACTCCGTCACACTTGACCAGCCTTAAGAGCCATCTAGCAGTTCAGGTCTGGCATTCTTTTACTTTTGCTAGTCGATATTACAAAGATCAGTATTAACATTTGGAAACATGAAATAACTCAAATTAGTGTATAACGCCAGTAATATGATACAAAGTAATTCAAGGCTTGTAACATACATAACAGTCTTCCTCGTCCTAGCTTAATTTTGCCTGCCTCTATTGGTAGGTTTGTGCAAGCAAGAGGAAAACGTTTGTCCTTGTGGACGATGGTTCTGTTTATGGCTTTGGCTGGATGGGTTTTGGTAGCCTCGGATTCCTTGACAGAGGAGCATCAGATAAAGTTTTGAAGCCTCGTATCCTGGAGAGCTTGAGATCCCATCACATATCTCAAATCAGCACTGGCTTATACCACACAGTAGTTGTTACAAATTGTGGACGAGTCTTTGGATTTGGAGACAACGAAAGAGCCCAACTTGGACATGATGCAGTAAGGGGATGCCTTGAACCTACAGAAATGTTTATGGAGAAAGCAATAAGTACAAAATATTGACTGACCAAACAAATATTGTTTCTACATCGTTATATAACATTTCAAAAAATGACTTGAATGTTTTGTGATTAGATCTTTTGTAAAGAACTTTTTTGTTGTATGATACAAAAAAGACA-AATCATACATTATTGTCTTCTGAAGTTC</genome_strand>
        <mrna_strand>CTCGCATCTATTGGTTCTGTAGTTCAGATTGCTGCTGGACCTAGTTATGCACTTGCAGTGTCTGATGATGGGACTCTATACTCTTTTGTTTCGGGTACTAATTTCTGCCTTGGTCATGGAGAACAGCAGAATGAACTCCAGCCACGTGCAATCCAGTCGTTTAAGAGGAAGGGCATTAATGTGGCTCGTGTTTCTGCTGGAGATGAGCATGTTGTGGCACTGGATTCCACTGGATAT..............................................................................................................................GTATATACTTGGGGGAAAGGTTATTGCGGTGCATTGGGGCATGGTGATGAGACTGATAAGACTACTCCGTCACACTTGACCAGCCTTAAGAGCCATCTAGCAGTTCAG....................................................................................................................................................................................GTTTGTGCAAGCAAGAGGAAAACGTTTGTCCTTGTGGACGATGGTTCTGTTTATGGCTTTGGCTGGATGGGTTTTGGTAGCCTCGGATTCCTTGACAGAGGAGCATCAGATAAAGTTTTGAAGCCTCGTATCCTGGAGAGCTTGAGATCCCATCACATATCTCAAATCAGCACTGGCTTATACCACACAGTAGTTGTTACAAATTGTGGACGAGTCTTTGGATTTGGAGACAACGAAAGAGCCCAACTTGGACATGATGCAGTAAGGGGATGCCTTGAACCTACAGAAATGTTTATGGAGAAAGCAATAAGTACAAAATATTGACTGACCAAACAAATATTGTTTCTACATCGTTATATAACATTTCAAAAAATGACTTGAATGTTTTGTGATTAGATCTTTTGTAAAGAACTTTTTTGTTGTATGATACAAAAAAGACANAATCATACATTATTGTCTTCTGAAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734184" ref_strand="+" ref_description="SGN-E734184 [LB12AA07]">
      <seq>tacttgggggaaaggttattgcggtgcattggggcatggtgatgagactgataagactactccgtcacacttgaccagccttaagagccatctagcagttcaggtttgtgcaagcaagaggaaaacgtttgtccttgtggacgatggttctgtttatggctttggctggatgggttttggtagcctcggattccttgacagaggagcatcagataaagttttgaagcctcgtatcctggagagcttgagatcccatcacatatctcaaatcagcactggcttataccacacagtagttgttacaaattgtggacgagtctttggatttggagacaacgaaagagcccaacttggacatgatgcagtaaggggatgtcttgaacctacagaaatgtttatggagaaagcaataagtacaaaatattgactgaccaaacaaatattgtttctacatcgttatataacatttcaaaaaatgacttgaatgttttgtgattagatcttttgtaaagaacttttttgttgtatgatacaaaaaagacaaatcatacattattgtcttctgaagttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="-" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="5970" stop="4614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5670" g_stop="5568" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5567" i_stop="5388" i_length="180">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5387" g_stop="4920" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="571" r_length="468" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="572" polyA_stop="588"/>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="-" ref_id="SGN-E734184" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5670" e_stop="5568"/>
          <exon e_start="5387" e_stop="4920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTTGGGGGAAAGGTTATTGCGGTGCATTGGGGCATGGTGATGAGACTGATAAGACTACTCCGTCACACTTGACCAGCCTTAAGAGCCATCTAGCAGTTCAGGTCTGGCATTCTTTTACTTTTGCTAGTCGATATTACAAAGATCAGTATTAACATTTGGAAACATGAAATAACTCAAATTAGTGTATAACGCCAGTAATATGATACAAAGTAATTCAAGGCTTGTAACATACATAACAGTCTTCCTCGTCCTAGCTTAATTTTGCCTGCCTCTATTGGTAGGTTTGTGCAAGCAAGAGGAAAACGTTTGTCCTTGTGGACGATGGTTCTGTTTATGGCTTTGGCTGGATGGGTTTTGGTAGCCTCGGATTCCTTGACAGAGGAGCATCAGATAAAGTTTTGAAGCCTCGTATCCTGGAGAGCTTGAGATCCCATCACATATCTCAAATCAGCACTGGCTTATACCACACAGTAGTTGTTACAAATTGTGGACGAGTCTTTGGATTTGGAGACAACGAAAGAGCCCAACTTGGACATGATGCAGTAAGGGGATGCCTTGAACCTACAGAAATGTTTATGGAGAAAGCAATAAGTACAAAATATTGACTGACCAAACAAATATTGTTTCTACATCGTTATATAACATTTCAAAAAATGACTTGAATGTTTTGTGATTAGATCTTTTGTAAAGAACTTTTTTGTTGTATGATACAAAAAAGACAAATCATACATTATTGTCTTCTGAAGTTC</genome_strand>
        <mrna_strand>TACTTGGGGGAAAGGTTATTGCGGTGCATTGGGGCATGGTGATGAGACTGATAAGACTACTCCGTCACACTTGACCAGCCTTAAGAGCCATCTAGCAGTTCAG....................................................................................................................................................................................GTTTGTGCAAGCAAGAGGAAAACGTTTGTCCTTGTGGACGATGGTTCTGTTTATGGCTTTGGCTGGATGGGTTTTGGTAGCCTCGGATTCCTTGACAGAGGAGCATCAGATAAAGTTTTGAAGCCTCGTATCCTGGAGAGCTTGAGATCCCATCACATATCTCAAATCAGCACTGGCTTATACCACACAGTAGTTGTTACAAATTGTGGACGAGTCTTTGGATTTGGAGACAACGAAAGAGCCCAACTTGGACATGATGCAGTAAGGGGATGTCTTGAACCTACAGAAATGTTTATGGAGAAAGCAATAAGTACAAAATATTGACTGACCAAACAAATATTGTTTCTACATCGTTATATAACATTTCAAAAAATGACTTGAATGTTTTGTGATTAGATCTTTTGTAAAGAACTTTTTTGTTGTATGATACAAAAAAGACAAATCATACATTATTGTCTTCTGAAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367972" ref_strand="+" ref_description="SGN-E367972 [TUS-22-N3]">
      <seq>tcaatctatgcttctttgcattgtaatgctcaggaagagctgttgacgcgatgtaacggcaattggaagcgtcttttgaggttcttgatggctgtggaacagtcctctgatatggttgaaacttctgcaggcaatatgcaaataaggagtggcaggtatcacacactgctaatcaatgattcagcagcatactcttgtggttccagtttatgcggcgtccttggtcatgggcctgaaacaactcagtgtgtggaatttactcgaattagctttcctgttcccgtacaagttgcgcaagtttcagcttctcataatcatgctgcttttgtcacagggtctggacaggtgttcacatgtggagataactcatcattctgttgtgggcatagagacactggacgcccaatcttcaggccaagaatggttgaagcattgaaaaatattcctgtcaagcaggttgctgcaggtctcagttttactatgtttctcactaggaaaggtcatgttttcacatgcggaacgaacggacatggtcaacttggtcatggtgacacatcggataggccaacaccgacatgtatagaactactcgcatctattggttctgtagttcagattgctgctggacctagttatgcacttgcagtgtctgatgatgggactctatactctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="-" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="9276" stop="5652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8976" g_stop="8842" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8841" i_stop="8305" i_length="537">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8304" g_stop="8095" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="345" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8094" i_stop="7275" i_length="820">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7274" g_stop="7164" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="456" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7163" i_stop="6171" i_length="993">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6170" g_stop="5952" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="675" r_length="219" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="-" ref_id="SGN-E367972" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8976" e_stop="8842"/>
          <exon e_start="8304" e_stop="8095"/>
          <exon e_start="7274" e_stop="7164"/>
          <exon e_start="6170" e_stop="5952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATCTATGCTTCTTTGCATTGTAATGCTCAGGAAGAGCTGTTGACGCGATGTAACGGCAATTGGAAGCGTCTTTTGAGGTTCTTGATGGCTGTGGAACAGTCCTCTGATATGGTTGAAACTTCTGCAGGCAATGTACTATTTCTTTGGAAAACTTGTTATTCGTTTATCAATGTTTACTTTGTTTGGTTGATTGCTATTTTTAGGACTAATAATATATGGTCGAAATGTTACTTATCAAATAGATGGATGAAATGTTTTCAGACACTATTTTTGTTGTTGTCAGTCAGATAGGGCCAAAAATGACACTTCTCGACCCCTTTTCGGCTTCTTCGTGTATTTACCTTATTGTATTTTGAACTCCTTAGTGAAAATTTGGACTCTTCAACTGGATGGAGCGCGTGATTCCTCTGCTTCACATATAGCAGTAGGTACTAGGCTATCTTTTTTTGTTTGGTTAAGGAATTGTATGTAAGGTTTAGTGAATTATTTAGTATTGCAATGAAATGGGACCAAATAGAATGGAATGGATAACGGTTTTATGATCGAGGTTTAGTTGCTGATTGATTTCTACCTTAATATTTCTAGATTTTAGTTACTCGCTTCTACTAGAATAGTCTGCAGCTAGGACTTCATCTTTTGTTATTACTTACTGTAAAAAGTTCTTGGCAGATGCAAATAAGGAGTGGCAGGTATCACACACTGCTAATCAATGATTCAGCAGCATACTCTTGTGGTTCCAGTTTATGCGGCGTCCTTGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTGTTCCCGTACAAGTTGCGCAAGTTTCAGCTTCTCATAATCATGCTGCTTTTGTCACAGGGTCTGGACAGGTTTGGCAATCGGCGTATATTATCAACTACTCTCATTTTTATTACAGTAATTTACCTTTTACGTGCACTTTGTTTTTTGCATGCATGATGTGGAAATCCTCGTTCTGTTGAGGAGTAAAGTAAAGAAGGTGAAAGAGGAAGAATGAAAATGGAGACAAGCAATCCAATCACATTTTCGTTTTTTTGGGAAATTATTTTAGGAGAGGTTCCTTTGGGAGACTGATACTAATATTGTTGAAATATATATTGACTTTGAAAAATGCAAGAACTGCCACACCATGCCACTCTGCAAAAAATAATTCTTACTATTTTAGTATGAGTTGGACCTAAAACTTACCGGCATGGTGTGGTCAATAAAATGGGGCTAACCTTAGAGACTATTAACAAAAAATACTCGGTGAATTCTTCCTATTTGCTTAAGCTTTAGTATACAATGTTAGTCGATACTTCTATGTTTCTATCTAAGTGCTGATCAAATACTTCTGCTCACTTTTTCCTATCCCTTCTGGGGAAAATCAGTCATCATTCTGCCAATTTGTAATGGCTAGTGCTACTGCAATAAAATAAGATAGAAAAAAAATTTATATTTCGAGCAGATTGATGCACCTTACGATGAGAGAGCCTCTCAAGTTTTGTACCGCTTAGACATATCCCTTACGAAAGTCCACAGTAGGTTGCAATATTCGAAGTGTGTTAGAGAATCATTCTCTGTTGTAAATATGCTAAAAACTGCCATGTTTTGTCTACTTCTACAACATAGAATGTATATACATACTATTGCATTTTATATTATTCATGAGGTTTACAATTCTTGGTATAGGTGTTCACATGTGGAGATAACTCATCATTCTGTTGTGGGCATAGAGACACTGGACGCCCAATCTTCAGGCCAAGAATGGTTGAAGCATTGAAAAATATTCCTGTCAAGCAGGTAAATTTCTTTCTATCACGTCATGCCATCTAATTGACGGGATTACCTCAATACATGTTACAGATTTGGATTCTTTTTTGATGTTGTTGTTTTTGTTGAAAACTGTAAGTTCAATAGAGATTGAGATTCTATACATGGTTTACGATTAAGTTGATCTTTTAGTTCTGCTAGATCAATTTATGGGAATAAATGATACTGCGTCAAAATTTATTTGTTTGTTTGGAGGAGTACTGGTTAAGAAAAAAATGATGTGATGATTTGAAATATCTGCAACTTAGGAGGATTTTAGAGTCTGCCAGGAATTTCTGGTCTCTCTTATCAAGACCAACTACGAAAGAAAATAGGGAACCGAAGGATAAACTCCACTAAGTTTTAATAGCATAATTCAAGCTGTGAATGACATAAACACCTTCTTGTTCCTATGTTTTATTGCAATAAGCTTTCTGTCATTTCTTGAAATGCTTTTTGATAAAATTGGATCGACAAGCCACTCTTGAATAAATGAAGGCTAAAAATGAAAACGAGGTATTTTTAAGAGTTAGGCAACACCTATGACATGTCCATTAGTTTTAGTTGCAAATTGGAAATACCATTGTAGGTGTTACGGTGCTAATGCAGATCTAATTGGTTCCCAGCAATGTGTATGTGATGCTCTTCTGCATTTTTTCATTGTCTGTAAATGTTTTGGGTTCGTTTATCTTTAAAATTGGGCTTAATTTTGTAGTATCTTTGAAAAAGTACTCTCTCCATTTCAATTTATTTGTCTGATTTTGATTTGACACGGATTTTAAGAAAGTAAGGAAGATTTTTGAATAGGATATATTGAATGTATTAAAATGTCCTTTAATCTTATGCCTTAAACATTCCATGTGGTAAAGTTGGAAATAAAGAGTTGCCTAACACGGAAAGAACATTCTCTTTTAGACATACTAAAACGTGAAGCTGTTAAGTTTTGTCATAATACATTGCTCACTACTGTTGGAACTGGTTCAGGTTGCTGCAGGTCTCAGTTTTACTATGTTTCTCACTAGGAAAGGTCATGTTTTCACATGCGGAACGAACGGACATGGTCAACTTGGTCATGGTGACACATCGGATAGGCCAACACCGACATGTATAGAACTACTCGCATCTATTGGTTCTGTAGTTCAGATTGCTGCTGGACCTAGTTATGCACTTGCAGTGTCTGATGATGGGACTCTATACTCTTTT</genome_strand>
        <mrna_strand>TCAATCTATGCTTCTTTGCATTGTAATGCTCAGGAAGAGCTGTTGACGCGATGTAACGGCAATTGGAAGCGTCTTTTGAGGTTCTTGATGGCTGTGGAACAGTCCTCTGATATGGTTGAAACTTCTGCAGGCAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAAATAAGGAGTGGCAGGTATCACACACTGCTAATCAATGATTCAGCAGCATACTCTTGTGGTTCCAGTTTATGCGGCGTCCTTGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTGTTCCCGTACAAGTTGCGCAAGTTTCAGCTTCTCATAATCATGCTGCTTTTGTCACAGGGTCTGGACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCACATGTGGAGATAACTCATCATTCTGTTGTGGGCATAGAGACACTGGACGCCCAATCTTCAGGCCAAGAATGGTTGAAGCATTGAAAAATATTCCTGTCAAGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTGCAGGTCTCAGTTTTACTATGTTTCTCACTAGGAAAGGTCATGTTTTCACATGCGGAACGAACGGACATGGTCAACTTGGTCATGGTGACACATCGGATAGGCCAACACCGACATGTATAGAACTACTCGCATCTATTGGTTCTGTAGTTCAGATTGCTGCTGGACCTAGTTATGCACTTGCAGTGTCTGATGATGGGACTCTATACTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572707" ref_strand="+" ref_description="SGN-E572707 [31902]">
      <seq>caagtttcagcttcgcataatcatgctgcttttgtcacagggtctggacaggtgttcacatgtggagataactcatcatactgttgtgggcatagcgacactggacgcccaatcttcaggccaagaatggttgaagcattgaaaaatattcctgtcaagcaggttgctgtttgtctcagttttactatgtttctcactaggaaaggtcatgttttcacatgcggaactaatggacatggtcaacttggtcatggtgacacatcggataggccaacaccgacatgcatagaattactggcctctattggttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="-" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="8445" stop="5720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8145" g_stop="8095" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8094" i_stop="7275" i_length="820">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.966" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7274" g_stop="7164" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="162" r_length="111" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7163" i_stop="6171" i_length="993">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6170" g_stop="6020" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="313" r_length="151" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="-" ref_id="SGN-E572707" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E572707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8145" e_stop="8095"/>
          <exon e_start="7274" e_stop="7164"/>
          <exon e_start="6170" e_stop="6020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTTTCAGCTTCTCATAATCATGCTGCTTTTGTCACAGGGTCTGGACAGGTTTGGCAATCGGCGTATATTATCAACTACTCTCATTTTTATTACAGTAATTTACCTTTTACGTGCACTTTGTTTTTTGCATGCATGATGTGGAAATCCTCGTTCTGTTGAGGAGTAAAGTAAAGAAGGTGAAAGAGGAAGAATGAAAATGGAGACAAGCAATCCAATCACATTTTCGTTTTTTTGGGAAATTATTTTAGGAGAGGTTCCTTTGGGAGACTGATACTAATATTGTTGAAATATATATTGACTTTGAAAAATGCAAGAACTGCCACACCATGCCACTCTGCAAAAAATAATTCTTACTATTTTAGTATGAGTTGGACCTAAAACTTACCGGCATGGTGTGGTCAATAAAATGGGGCTAACCTTAGAGACTATTAACAAAAAATACTCGGTGAATTCTTCCTATTTGCTTAAGCTTTAGTATACAATGTTAGTCGATACTTCTATGTTTCTATCTAAGTGCTGATCAAATACTTCTGCTCACTTTTTCCTATCCCTTCTGGGGAAAATCAGTCATCATTCTGCCAATTTGTAATGGCTAGTGCTACTGCAATAAAATAAGATAGAAAAAAAATTTATATTTCGAGCAGATTGATGCACCTTACGATGAGAGAGCCTCTCAAGTTTTGTACCGCTTAGACATATCCCTTACGAAAGTCCACAGTAGGTTGCAATATTCGAAGTGTGTTAGAGAATCATTCTCTGTTGTAAATATGCTAAAAACTGCCATGTTTTGTCTACTTCTACAACATAGAATGTATATACATACTATTGCATTTTATATTATTCATGAGGTTTACAATTCTTGGTATAGGTGTTCACATGTGGAGATAACTCATCATTCTGTTGTGGGCATAGAGACACTGGACGCCCAATCTTCAGGCCAAGAATGGTTGAAGCATTGAAAAATATTCCTGTCAAGCAGGTAAATTTCTTTCTATCACGTCATGCCATCTAATTGACGGGATTACCTCAATACATGTTACAGATTTGGATTCTTTTTTGATGTTGTTGTTTTTGTTGAAAACTGTAAGTTCAATAGAGATTGAGATTCTATACATGGTTTACGATTAAGTTGATCTTTTAGTTCTGCTAGATCAATTTATGGGAATAAATGATACTGCGTCAAAATTTATTTGTTTGTTTGGAGGAGTACTGGTTAAGAAAAAAATGATGTGATGATTTGAAATATCTGCAACTTAGGAGGATTTTAGAGTCTGCCAGGAATTTCTGGTCTCTCTTATCAAGACCAACTACGAAAGAAAATAGGGAACCGAAGGATAAACTCCACTAAGTTTTAATAGCATAATTCAAGCTGTGAATGACATAAACACCTTCTTGTTCCTATGTTTTATTGCAATAAGCTTTCTGTCATTTCTTGAAATGCTTTTTGATAAAATTGGATCGACAAGCCACTCTTGAATAAATGAAGGCTAAAAATGAAAACGAGGTATTTTTAAGAGTTAGGCAACACCTATGACATGTCCATTAGTTTTAGTTGCAAATTGGAAATACCATTGTAGGTGTTACGGTGCTAATGCAGATCTAATTGGTTCCCAGCAATGTGTATGTGATGCTCTTCTGCATTTTTTCATTGTCTGTAAATGTTTTGGGTTCGTTTATCTTTAAAATTGGGCTTAATTTTGTAGTATCTTTGAAAAAGTACTCTCTCCATTTCAATTTATTTGTCTGATTTTGATTTGACACGGATTTTAAGAAAGTAAGGAAGATTTTTGAATAGGATATATTGAATGTATTAAAATGTCCTTTAATCTTATGCCTTAAACATTCCATGTGGTAAAGTTGGAAATAAAGAGTTGCCTAACACGGAAAGAACATTCTCTTTTAGACATACTAAAACGTGAAGCTGTTAAGTTTTGTCATAATACATTGCTCACTACTGTTGGAACTGGTTCAGGTTGCTGCAGGTCTCAGTTTTACTATGTTTCTCACTAGGAAAGGTCATGTTTTCACATGCGGAACGAACGGACATGGTCAACTTGGTCATGGTGACACATCGGATAGGCCAACACCGACATGTATAGAACTACTCGCATCTATTGGTTCTG</genome_strand>
        <mrna_strand>CAAGTTTCAGCTTCGCATAATCATGCTGCTTTTGTCACAGGGTCTGGACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCACATGTGGAGATAACTCATCATACTGTTGTGGGCATAGCGACACTGGACGCCCAATCTTCAGGCCAAGAATGGTTGAAGCATTGAAAAATATTCCTGTCAAGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTGTTTGTCTCAGTTTTACTATGTTTCTCACTAGGAAAGGTCATGTTTTCACATGCGGAACTAATGGACATGGTCAACTTGGTCATGGTGACACATCGGATAGGCCAACACCGACATGCATAGAATTACTGGCCTCTATTGGTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E430132" ref_strand="+" ref_description="SGN-E430132 [STM-53-O1]">
      <seq>atggtttgtttcctaaaaagttcaagtctttggtagattatgctgcttttcagctttgtggattgagttcaatctatgcttctttgcattgtaatgctcaggaagagctgttgaagcgatgtaacggcaattggaagcgtcttttgaggttcttgatggctgtggaacagtcctctgatatggttgaaacttctgcaggaaatatgcaaataaggagtggcaggtatcacacactgctaatcaatgattcagcagcatactcttgtggttccagtttatgcggcgtccttggtcatgggcctgaaacaactcagtgtgtggaatttactcgaattagctttcctgttcccgtacaagttgcccaagtttcagcttcgcataatcatgctgcttttgtcacagggtctggacaggtgttcacatgtggagataactcatcatactgttgtgggcatagcgacaccgggcgcccaatcttcacgccaagaatggttgaagcattgaaaaatattcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="-" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="9344" stop="6873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9044" g_stop="8842" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8841" i_stop="8305" i_length="537">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8304" g_stop="8095" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="413" r_length="210" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8094" i_stop="7275" i_length="820">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.966" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7274" g_stop="7173" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="515" r_length="102" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="-" ref_id="SGN-E430132" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E430132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9044" e_stop="8842"/>
          <exon e_start="8304" e_stop="8095"/>
          <exon e_start="7274" e_stop="7173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTTTGTTTCCTAAAAAGTTCAAGTCTTTGGTAGATTATGCTGCTTTTCAGCTTTGTGGATTGAGTTCAATCTATGCTTCTTTGCATTGTAATGCTCAGGAAGAGCTGTTGACGCGATGTAACGGCAATTGGAAGCGTCTTTTGAGGTTCTTGATGGCTGTGGAACAGTCCTCTGATATGGTTGAAACTTCTGCAGGCAATGTACTATTTCTTTGGAAAACTTGTTATTCGTTTATCAATGTTTACTTTGTTTGGTTGATTGCTATTTTTAGGACTAATAATATATGGTCGAAATGTTACTTATCAAATAGATGGATGAAATGTTTTCAGACACTATTTTTGTTGTTGTCAGTCAGATAGGGCCAAAAATGACACTTCTCGACCCCTTTTCGGCTTCTTCGTGTATTTACCTTATTGTATTTTGAACTCCTTAGTGAAAATTTGGACTCTTCAACTGGATGGAGCGCGTGATTCCTCTGCTTCACATATAGCAGTAGGTACTAGGCTATCTTTTTTTGTTTGGTTAAGGAATTGTATGTAAGGTTTAGTGAATTATTTAGTATTGCAATGAAATGGGACCAAATAGAATGGAATGGATAACGGTTTTATGATCGAGGTTTAGTTGCTGATTGATTTCTACCTTAATATTTCTAGATTTTAGTTACTCGCTTCTACTAGAATAGTCTGCAGCTAGGACTTCATCTTTTGTTATTACTTACTGTAAAAAGTTCTTGGCAGATGCAAATAAGGAGTGGCAGGTATCACACACTGCTAATCAATGATTCAGCAGCATACTCTTGTGGTTCCAGTTTATGCGGCGTCCTTGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTGTTCCCGTACAAGTTGCGCAAGTTTCAGCTTCTCATAATCATGCTGCTTTTGTCACAGGGTCTGGACAGGTTTGGCAATCGGCGTATATTATCAACTACTCTCATTTTTATTACAGTAATTTACCTTTTACGTGCACTTTGTTTTTTGCATGCATGATGTGGAAATCCTCGTTCTGTTGAGGAGTAAAGTAAAGAAGGTGAAAGAGGAAGAATGAAAATGGAGACAAGCAATCCAATCACATTTTCGTTTTTTTGGGAAATTATTTTAGGAGAGGTTCCTTTGGGAGACTGATACTAATATTGTTGAAATATATATTGACTTTGAAAAATGCAAGAACTGCCACACCATGCCACTCTGCAAAAAATAATTCTTACTATTTTAGTATGAGTTGGACCTAAAACTTACCGGCATGGTGTGGTCAATAAAATGGGGCTAACCTTAGAGACTATTAACAAAAAATACTCGGTGAATTCTTCCTATTTGCTTAAGCTTTAGTATACAATGTTAGTCGATACTTCTATGTTTCTATCTAAGTGCTGATCAAATACTTCTGCTCACTTTTTCCTATCCCTTCTGGGGAAAATCAGTCATCATTCTGCCAATTTGTAATGGCTAGTGCTACTGCAATAAAATAAGATAGAAAAAAAATTTATATTTCGAGCAGATTGATGCACCTTACGATGAGAGAGCCTCTCAAGTTTTGTACCGCTTAGACATATCCCTTACGAAAGTCCACAGTAGGTTGCAATATTCGAAGTGTGTTAGAGAATCATTCTCTGTTGTAAATATGCTAAAAACTGCCATGTTTTGTCTACTTCTACAACATAGAATGTATATACATACTATTGCATTTTATATTATTCATGAGGTTTACAATTCTTGGTATAGGTGTTCACATGTGGAGATAACTCATCATTCTGTTGTGGGCATAGAGACACTGGACGCCCAATCTTCAGGCCAAGAATGGTTGAAGCATTGAAAAATATTCCT</genome_strand>
        <mrna_strand>ATGGTTTGTTTCCTAAAAAGTTCAAGTCTTTGGTAGATTATGCTGCTTTTCAGCTTTGTGGATTGAGTTCAATCTATGCTTCTTTGCATTGTAATGCTCAGGAAGAGCTGTTGAAGCGATGTAACGGCAATTGGAAGCGTCTTTTGAGGTTCTTGATGGCTGTGGAACAGTCCTCTGATATGGTTGAAACTTCTGCAGGAAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAAATAAGGAGTGGCAGGTATCACACACTGCTAATCAATGATTCAGCAGCATACTCTTGTGGTTCCAGTTTATGCGGCGTCCTTGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTGTTCCCGTACAAGTTGCCCAAGTTTCAGCTTCGCATAATCATGCTGCTTTTGTCACAGGGTCTGGACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCACATGTGGAGATAACTCATCATACTGTTGTGGGCATAGCGACACCGGGCGCCCAATCTTCACGCCAAGAATGGTTGAAGCATTGAAAAATATTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242253" ref_strand="+" ref_description="SGN-E242253 [cLED-37-H20]">
      <seq>tcaatctatgcttctttgcattgtaatgctcaggaagagctgttgacgcgatgtaacggcaattggaagcgtcttttgaggttcttgatggctgtggaacagtcctctgatatggttgaaacttctgcaggcaatatgcaaataaggagtggcaggtatcacacactgctaatcaatgattcagcagcatactcttgtggttccagtttatgcggcgtccttggtcatgggcctgaaacaactcagtgtgtggaatttactcgaattagctttcctgttcccgtacaagttgcgcaagtttcagcttctcataatcatgctgcttttgtcacagggtctggacaggtgttcacatgtggagataactcatcattctgttgtgggcatagagacactggacgcccaatcttcaggccaagaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="-" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="9276" stop="6897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8976" g_stop="8842" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8841" i_stop="8305" i_length="537">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8304" g_stop="8095" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="345" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8094" i_stop="7275" i_length="820">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7274" g_stop="7197" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="423" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="-" ref_id="SGN-E242253" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8976" e_stop="8842"/>
          <exon e_start="8304" e_stop="8095"/>
          <exon e_start="7274" e_stop="7197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATCTATGCTTCTTTGCATTGTAATGCTCAGGAAGAGCTGTTGACGCGATGTAACGGCAATTGGAAGCGTCTTTTGAGGTTCTTGATGGCTGTGGAACAGTCCTCTGATATGGTTGAAACTTCTGCAGGCAATGTACTATTTCTTTGGAAAACTTGTTATTCGTTTATCAATGTTTACTTTGTTTGGTTGATTGCTATTTTTAGGACTAATAATATATGGTCGAAATGTTACTTATCAAATAGATGGATGAAATGTTTTCAGACACTATTTTTGTTGTTGTCAGTCAGATAGGGCCAAAAATGACACTTCTCGACCCCTTTTCGGCTTCTTCGTGTATTTACCTTATTGTATTTTGAACTCCTTAGTGAAAATTTGGACTCTTCAACTGGATGGAGCGCGTGATTCCTCTGCTTCACATATAGCAGTAGGTACTAGGCTATCTTTTTTTGTTTGGTTAAGGAATTGTATGTAAGGTTTAGTGAATTATTTAGTATTGCAATGAAATGGGACCAAATAGAATGGAATGGATAACGGTTTTATGATCGAGGTTTAGTTGCTGATTGATTTCTACCTTAATATTTCTAGATTTTAGTTACTCGCTTCTACTAGAATAGTCTGCAGCTAGGACTTCATCTTTTGTTATTACTTACTGTAAAAAGTTCTTGGCAGATGCAAATAAGGAGTGGCAGGTATCACACACTGCTAATCAATGATTCAGCAGCATACTCTTGTGGTTCCAGTTTATGCGGCGTCCTTGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTGTTCCCGTACAAGTTGCGCAAGTTTCAGCTTCTCATAATCATGCTGCTTTTGTCACAGGGTCTGGACAGGTTTGGCAATCGGCGTATATTATCAACTACTCTCATTTTTATTACAGTAATTTACCTTTTACGTGCACTTTGTTTTTTGCATGCATGATGTGGAAATCCTCGTTCTGTTGAGGAGTAAAGTAAAGAAGGTGAAAGAGGAAGAATGAAAATGGAGACAAGCAATCCAATCACATTTTCGTTTTTTTGGGAAATTATTTTAGGAGAGGTTCCTTTGGGAGACTGATACTAATATTGTTGAAATATATATTGACTTTGAAAAATGCAAGAACTGCCACACCATGCCACTCTGCAAAAAATAATTCTTACTATTTTAGTATGAGTTGGACCTAAAACTTACCGGCATGGTGTGGTCAATAAAATGGGGCTAACCTTAGAGACTATTAACAAAAAATACTCGGTGAATTCTTCCTATTTGCTTAAGCTTTAGTATACAATGTTAGTCGATACTTCTATGTTTCTATCTAAGTGCTGATCAAATACTTCTGCTCACTTTTTCCTATCCCTTCTGGGGAAAATCAGTCATCATTCTGCCAATTTGTAATGGCTAGTGCTACTGCAATAAAATAAGATAGAAAAAAAATTTATATTTCGAGCAGATTGATGCACCTTACGATGAGAGAGCCTCTCAAGTTTTGTACCGCTTAGACATATCCCTTACGAAAGTCCACAGTAGGTTGCAATATTCGAAGTGTGTTAGAGAATCATTCTCTGTTGTAAATATGCTAAAAACTGCCATGTTTTGTCTACTTCTACAACATAGAATGTATATACATACTATTGCATTTTATATTATTCATGAGGTTTACAATTCTTGGTATAGGTGTTCACATGTGGAGATAACTCATCATTCTGTTGTGGGCATAGAGACACTGGACGCCCAATCTTCAGGCCAAGAATG</genome_strand>
        <mrna_strand>TCAATCTATGCTTCTTTGCATTGTAATGCTCAGGAAGAGCTGTTGACGCGATGTAACGGCAATTGGAAGCGTCTTTTGAGGTTCTTGATGGCTGTGGAACAGTCCTCTGATATGGTTGAAACTTCTGCAGGCAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAAATAAGGAGTGGCAGGTATCACACACTGCTAATCAATGATTCAGCAGCATACTCTTGTGGTTCCAGTTTATGCGGCGTCCTTGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTGTTCCCGTACAAGTTGCGCAAGTTTCAGCTTCTCATAATCATGCTGCTTTTGTCACAGGGTCTGGACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCACATGTGGAGATAACTCATCATTCTGTTGTGGGCATAGAGACACTGGACGCCCAATCTTCAGGCCAAGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210073" ref_strand="+" ref_description="SGN-E210073 [cLEC-40-E2]">
      <seq>catgggcctgaaacaactcactgtgtggaatttactcgaattagctttcctgttcccgtacaagttgcgcaagtttcagcttctcataatcatgctgcttttgtcacagggtctggacaggtgttcacatgtggagataactcatcattctgttgtgggcatagagacactggacgcccaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="-" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="8514" stop="6911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8214" g_stop="8095" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8094" i_stop="7275" i_length="820">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7274" g_stop="7211" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="184" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="-" ref_id="SGN-E210073" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>184</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8214" e_stop="8095"/>
          <exon e_start="7274" e_stop="7211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTGTTCCCGTACAAGTTGCGCAAGTTTCAGCTTCTCATAATCATGCTGCTTTTGTCACAGGGTCTGGACAGGTTTGGCAATCGGCGTATATTATCAACTACTCTCATTTTTATTACAGTAATTTACCTTTTACGTGCACTTTGTTTTTTGCATGCATGATGTGGAAATCCTCGTTCTGTTGAGGAGTAAAGTAAAGAAGGTGAAAGAGGAAGAATGAAAATGGAGACAAGCAATCCAATCACATTTTCGTTTTTTTGGGAAATTATTTTAGGAGAGGTTCCTTTGGGAGACTGATACTAATATTGTTGAAATATATATTGACTTTGAAAAATGCAAGAACTGCCACACCATGCCACTCTGCAAAAAATAATTCTTACTATTTTAGTATGAGTTGGACCTAAAACTTACCGGCATGGTGTGGTCAATAAAATGGGGCTAACCTTAGAGACTATTAACAAAAAATACTCGGTGAATTCTTCCTATTTGCTTAAGCTTTAGTATACAATGTTAGTCGATACTTCTATGTTTCTATCTAAGTGCTGATCAAATACTTCTGCTCACTTTTTCCTATCCCTTCTGGGGAAAATCAGTCATCATTCTGCCAATTTGTAATGGCTAGTGCTACTGCAATAAAATAAGATAGAAAAAAAATTTATATTTCGAGCAGATTGATGCACCTTACGATGAGAGAGCCTCTCAAGTTTTGTACCGCTTAGACATATCCCTTACGAAAGTCCACAGTAGGTTGCAATATTCGAAGTGTGTTAGAGAATCATTCTCTGTTGTAAATATGCTAAAAACTGCCATGTTTTGTCTACTTCTACAACATAGAATGTATATACATACTATTGCATTTTATATTATTCATGAGGTTTACAATTCTTGGTATAGGTGTTCACATGTGGAGATAACTCATCATTCTGTTGTGGGCATAGAGACACTGGACGCCCAATCT</genome_strand>
        <mrna_strand>CATGGGCCTGAAACAACTCACTGTGTGGAATTTACTCGAATTAGCTTTCCTGTTCCCGTACAAGTTGCGCAAGTTTCAGCTTCTCATAATCATGCTGCTTTTGTCACAGGGTCTGGACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCACATGTGGAGATAACTCATCATTCTGTTGTGGGCATAGAGACACTGGACGCCCAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E461221" ref_strand="+" ref_description="SGN-E461221 [cPRO-7-P5]">
      <seq>atggtttgtttcctaaaaagttcaagtctttggtagattatgctgcttttcagctttgtggattgagttcaatctatgcttctttgcattgtaatgctcaggaagagctgttgaagcgatgtaacggcaattggaagcgtcttttgaggttcttgatggctgtggaacagtcctctgatatggttgaaacttctgcaggaaatatgcaaataaggagtggcaggtatcacacactgctaatcaatgattcagcagcatactcttgtggttccagtttatgcggcgtccttggtcatgggcctgaaacaactcagtgtgtggaatttactcgaattagctttcctgttcccgtacaagttgcccaagtttcagcttcgcataatcatgctgcttttgtcacagggtctggacaggtgttcacatgtggagataactcatcatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="-" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="9344" stop="7764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9044" g_stop="8842" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8841" i_stop="8305" i_length="537">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8304" g_stop="8095" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="413" r_length="210" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="-" ref_id="SGN-E461221" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E461221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9044" e_stop="8842"/>
          <exon e_start="8304" e_stop="8095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTTTGTTTCCTAAAAAGTTCAAGTCTTTGGTAGATTATGCTGCTTTTCAGCTTTGTGGATTGAGTTCAATCTATGCTTCTTTGCATTGTAATGCTCAGGAAGAGCTGTTGACGCGATGTAACGGCAATTGGAAGCGTCTTTTGAGGTTCTTGATGGCTGTGGAACAGTCCTCTGATATGGTTGAAACTTCTGCAGGCAATGTACTATTTCTTTGGAAAACTTGTTATTCGTTTATCAATGTTTACTTTGTTTGGTTGATTGCTATTTTTAGGACTAATAATATATGGTCGAAATGTTACTTATCAAATAGATGGATGAAATGTTTTCAGACACTATTTTTGTTGTTGTCAGTCAGATAGGGCCAAAAATGACACTTCTCGACCCCTTTTCGGCTTCTTCGTGTATTTACCTTATTGTATTTTGAACTCCTTAGTGAAAATTTGGACTCTTCAACTGGATGGAGCGCGTGATTCCTCTGCTTCACATATAGCAGTAGGTACTAGGCTATCTTTTTTTGTTTGGTTAAGGAATTGTATGTAAGGTTTAGTGAATTATTTAGTATTGCAATGAAATGGGACCAAATAGAATGGAATGGATAACGGTTTTATGATCGAGGTTTAGTTGCTGATTGATTTCTACCTTAATATTTCTAGATTTTAGTTACTCGCTTCTACTAGAATAGTCTGCAGCTAGGACTTCATCTTTTGTTATTACTTACTGTAAAAAGTTCTTGGCAGATGCAAATAAGGAGTGGCAGGTATCACACACTGCTAATCAATGATTCAGCAGCATACTCTTGTGGTTCCAGTTTATGCGGCGTCCTTGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTGTTCCCGTACAAGTTGCGCAAGTTTCAGCTTCTCATAATCATGCTGCTTTTGTCACAGGGTCTGGACAG</genome_strand>
        <mrna_strand>ATGGTTTGTTTCCTAAAAAGTTCAAGTCTTTGGTAGATTATGCTGCTTTTCAGCTTTGTGGATTGAGTTCAATCTATGCTTCTTTGCATTGTAATGCTCAGGAAGAGCTGTTGAAGCGATGTAACGGCAATTGGAAGCGTCTTTTGAGGTTCTTGATGGCTGTGGAACAGTCCTCTGATATGGTTGAAACTTCTGCAGGAAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAAATAAGGAGTGGCAGGTATCACACACTGCTAATCAATGATTCAGCAGCATACTCTTGTGGTTCCAGTTTATGCGGCGTCCTTGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTGTTCCCGTACAAGTTGCCCAAGTTTCAGCTTCGCATAATCATGCTGCTTTTGTCACAGGGTCTGGACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241003" ref_strand="+" ref_description="SGN-E241003 [cLED-24-D24]">
      <seq>tcaatctatgcttctttgcattgtaatgctcaggaagagctgttgacgcgatgtaacggcaattggaagcgtcttttgaggttcttgatggctgtggaacagtcctctgatatggttgaaacttctgcaggcaatatgcaaataaggagtggcaggtatcacacactgctaatcaatgattcagcagcatactcttgtggttccagtttatgcggcgtccttggtcatgggcctgaaacaactcagtgtgtggaatttactcgaattagctttcctgttcccgtacaagttgcgcaagtttcagcttctcataatcatgctgcttttgtcacagggtctggacaggtgttcacatgtggagataactcatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="-" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="9276" stop="7766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8976" g_stop="8842" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8841" i_stop="8305" i_length="537">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8304" g_stop="8095" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="345" r_length="210" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="-" ref_id="SGN-E241003" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8976" e_stop="8842"/>
          <exon e_start="8304" e_stop="8095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATCTATGCTTCTTTGCATTGTAATGCTCAGGAAGAGCTGTTGACGCGATGTAACGGCAATTGGAAGCGTCTTTTGAGGTTCTTGATGGCTGTGGAACAGTCCTCTGATATGGTTGAAACTTCTGCAGGCAATGTACTATTTCTTTGGAAAACTTGTTATTCGTTTATCAATGTTTACTTTGTTTGGTTGATTGCTATTTTTAGGACTAATAATATATGGTCGAAATGTTACTTATCAAATAGATGGATGAAATGTTTTCAGACACTATTTTTGTTGTTGTCAGTCAGATAGGGCCAAAAATGACACTTCTCGACCCCTTTTCGGCTTCTTCGTGTATTTACCTTATTGTATTTTGAACTCCTTAGTGAAAATTTGGACTCTTCAACTGGATGGAGCGCGTGATTCCTCTGCTTCACATATAGCAGTAGGTACTAGGCTATCTTTTTTTGTTTGGTTAAGGAATTGTATGTAAGGTTTAGTGAATTATTTAGTATTGCAATGAAATGGGACCAAATAGAATGGAATGGATAACGGTTTTATGATCGAGGTTTAGTTGCTGATTGATTTCTACCTTAATATTTCTAGATTTTAGTTACTCGCTTCTACTAGAATAGTCTGCAGCTAGGACTTCATCTTTTGTTATTACTTACTGTAAAAAGTTCTTGGCAGATGCAAATAAGGAGTGGCAGGTATCACACACTGCTAATCAATGATTCAGCAGCATACTCTTGTGGTTCCAGTTTATGCGGCGTCCTTGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTGTTCCCGTACAAGTTGCGCAAGTTTCAGCTTCTCATAATCATGCTGCTTTTGTCACAGGGTCTGGACAG</genome_strand>
        <mrna_strand>TCAATCTATGCTTCTTTGCATTGTAATGCTCAGGAAGAGCTGTTGACGCGATGTAACGGCAATTGGAAGCGTCTTTTGAGGTTCTTGATGGCTGTGGAACAGTCCTCTGATATGGTTGAAACTTCTGCAGGCAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAAATAAGGAGTGGCAGGTATCACACACTGCTAATCAATGATTCAGCAGCATACTCTTGTGGTTCCAGTTTATGCGGCGTCCTTGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTGTTCCCGTACAAGTTGCGCAAGTTTCAGCTTCTCATAATCATGCTGCTTTTGTCACAGGGTCTGGACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542728" ref_strand="+" ref_description="SGN-E542728 [TUS-64-C21]">
      <seq>attttcattcatagatccgatatttgctcaaatttgtgtttataaagttcctatctttgtggggttttggagttttttcttgtaatttggtagaaaaagagtttaattttgttttgtttgttcaagtttgtgttttggggttgttgtttcttgatgatttatttcgacttagattataagatttccccaccaagtccttcattttcttattcaatttcatcaaattttcttacatctgatattttcttgataaagtgtgttaattgtttccattttcgtataaaagattgtttttgtgaagggaaaatgggggatcgtttgaggtcaactttaatggaggatttgccagtacatttgattcttgaaatattgatgtgcggtcgattagctgttattgatttaataagtttagagctaacttcaaggacttttaggggaacacatggtttgtttcctaaaaagttcaagtctttggtagattatgctgcttttcagctttgtggattgagttcaatctatgcttctttgcattgtaatgctcaggaagagctgttgacgcgatgtaacggcaattggaagcgtcttttgaggttcttgatggctgtggaacagtcctctgatatggttgaaacttctgcaggcaatatgcaaataaggagtggcaggtatcacacactgctaatcaatgattcagcagcatactcttgtggttccagtttatgcggcgtccttggtcatgggcctgaaacaactcagtgtgtggaatttactcgaattagctttcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="-" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="9786" stop="7863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9486" g_stop="8842" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8841" i_stop="8305" i_length="537">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8304" g_stop="8163" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="787" r_length="142" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="-" ref_id="SGN-E542728" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9486" e_stop="8842"/>
          <exon e_start="8304" e_stop="8163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCATTCATAGATCCGATATTTGCTCAAATTTGTGTTTATAAAGTTCCTATCTTTGTGGGGTTTTGGAGTTTTTTCTTGTAATTTGGTAGAAAAAGAGTTTAATTTTGTTTTGTTTGTTCAAGTTTGTGTTTTGGGGTTGTTGTTTCTTGATGATTTATTTCGACTTAGATTATAAGATTTCCCCACCAAGTCCTTCATTTTCTTATTCAATTTCATCAAATTTTCTTACATCTGATATTTTCTTGATAAAGTGTGTTAATTGTTTCCATTTTCGTATAAAAGATTGTTTTTGTGAAGGGAAAATGGGGGATCGTTTGAGGTCAACTTTAATGGAGGATTTGCCAGTACATTTGATTCTTGAAATATTGATGTGCGGTCGATTAGCTGTTATTGATTTAATAAGTTTAGAGCTAACTTCAAGGACTTTTAGGGGAACACATGGTTTGTTTCCTAAAAAGTTCAAGTCTTTGGTAGATTATGCTGCTTTTCAGCTTTGTGGATTGAGTTCAATCTATGCTTCTTTGCATTGTAATGCTCAGGAAGAGCTGTTGACGCGATGTAACGGCAATTGGAAGCGTCTTTTGAGGTTCTTGATGGCTGTGGAACAGTCCTCTGATATGGTTGAAACTTCTGCAGGCAATGTACTATTTCTTTGGAAAACTTGTTATTCGTTTATCAATGTTTACTTTGTTTGGTTGATTGCTATTTTTAGGACTAATAATATATGGTCGAAATGTTACTTATCAAATAGATGGATGAAATGTTTTCAGACACTATTTTTGTTGTTGTCAGTCAGATAGGGCCAAAAATGACACTTCTCGACCCCTTTTCGGCTTCTTCGTGTATTTACCTTATTGTATTTTGAACTCCTTAGTGAAAATTTGGACTCTTCAACTGGATGGAGCGCGTGATTCCTCTGCTTCACATATAGCAGTAGGTACTAGGCTATCTTTTTTTGTTTGGTTAAGGAATTGTATGTAAGGTTTAGTGAATTATTTAGTATTGCAATGAAATGGGACCAAATAGAATGGAATGGATAACGGTTTTATGATCGAGGTTTAGTTGCTGATTGATTTCTACCTTAATATTTCTAGATTTTAGTTACTCGCTTCTACTAGAATAGTCTGCAGCTAGGACTTCATCTTTTGTTATTACTTACTGTAAAAAGTTCTTGGCAGATGCAAATAAGGAGTGGCAGGTATCACACACTGCTAATCAATGATTCAGCAGCATACTCTTGTGGTTCCAGTTTATGCGGCGTCCTTGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTG</genome_strand>
        <mrna_strand>ATTTTCATTCATAGATCCGATATTTGCTCAAATTTGTGTTTATAAAGTTCCTATCTTTGTGGGGTTTTGGAGTTTTTTCTTGTAATTTGGTAGAAAAAGAGTTTAATTTTGTTTTGTTTGTTCAAGTTTGTGTTTTGGGGTTGTTGTTTCTTGATGATTTATTTCGACTTAGATTATAAGATTTCCCCACCAAGTCCTTCATTTTCTTATTCAATTTCATCAAATTTTCTTACATCTGATATTTTCTTGATAAAGTGTGTTAATTGTTTCCATTTTCGTATAAAAGATTGTTTTTGTGAAGGGAAAATGGGGGATCGTTTGAGGTCAACTTTAATGGAGGATTTGCCAGTACATTTGATTCTTGAAATATTGATGTGCGGTCGATTAGCTGTTATTGATTTAATAAGTTTAGAGCTAACTTCAAGGACTTTTAGGGGAACACATGGTTTGTTTCCTAAAAAGTTCAAGTCTTTGGTAGATTATGCTGCTTTTCAGCTTTGTGGATTGAGTTCAATCTATGCTTCTTTGCATTGTAATGCTCAGGAAGAGCTGTTGACGCGATGTAACGGCAATTGGAAGCGTCTTTTGAGGTTCTTGATGGCTGTGGAACAGTCCTCTGATATGGTTGAAACTTCTGCAGGCAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAAATAAGGAGTGGCAGGTATCACACACTGCTAATCAATGATTCAGCAGCATACTCTTGTGGTTCCAGTTTATGCGGCGTCCTTGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E424319" ref_strand="+" ref_description="SGN-E424319 [STM-43-K14]">
      <seq>aaaaagtttaattttgtttgtttgttcaagtttgtgctttggggttattgtttcttgatgatttatttcgacttagattataagatttccccgccaagtccttcattttcttattcaatttcatcgaattttcttacatctgataatttcttgataaagtgtgttgattgtttccattttcgtttaaaagattgtttttgtgaagggaaaatgggggatcgtttgaggtcaacttcaatggaggatttgccagtacatttgattcttgaaatattgatgtcgggtcgattagctgttattgatttaataagtttagagctaacttcaaggacttttaggggaacacatggtttgtttcctaaaaagttcaagtctttggtagattatgctgcttttcagctttgtggattgagttcaatctatgcttctttgcattgtaatgctcaggaagagctgttgaagcgatgtaacggcaattggaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="-" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="9692" stop="8607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9391" g_stop="8907" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="-" ref_id="SGN-E424319" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E424319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9391" e_stop="8907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGTTTAATTTTGTTTTGTTTGTTCAAGTTTGTGTTTTGGGGTTGTTGTTTCTTGATGATTTATTTCGACTTAGATTATAAGATTTCCCCACCAAGTCCTTCATTTTCTTATTCAATTTCATCAAATTTTCTTACATCTGATATTTTCTTGATAAAGTGTGTTAATTGTTTCCATTTTCGTATAAAAGATTGTTTTTGTGAAGGGAAAATGGGGGATCGTTTGAGGTCAACTTTAATGGAGGATTTGCCAGTACATTTGATTCTTGAAATATTGATGTGCGGTCGATTAGCTGTTATTGATTTAATAAGTTTAGAGCTAACTTCAAGGACTTTTAGGGGAACACATGGTTTGTTTCCTAAAAAGTTCAAGTCTTTGGTAGATTATGCTGCTTTTCAGCTTTGTGGATTGAGTTCAATCTATGCTTCTTTGCATTGTAATGCTCAGGAAGAGCTGTTGACGCGATGTAACGGCAATTGGAAGC</genome_strand>
        <mrna_strand>AAAAAGTTTAATTTTG-TTTGTTTGTTCAAGTTTGTGCTTTGGGGTTATTGTTTCTTGATGATTTATTTCGACTTAGATTATAAGATTTCCCCGCCAAGTCCTTCATTTTCTTATTCAATTTCATCGAATTTTCTTACATCTGATAATTTCTTGATAAAGTGTGTTGATTGTTTCCATTTTCGTTTAAAAGATTGTTTTTGTGAAGGGAAAATGGGGGATCGTTTGAGGTCAACTTCAATGGAGGATTTGCCAGTACATTTGATTCTTGAAATATTGATGTCGGGTCGATTAGCTGTTATTGATTTAATAAGTTTAGAGCTAACTTCAAGGACTTTTAGGGGAACACATGGTTTGTTTCCTAAAAAGTTCAAGTCTTTGGTAGATTATGCTGCTTTTCAGCTTTGTGGATTGAGTTCAATCTATGCTTCTTTGCATTGTAATGCTCAGGAAGAGCTGTTGAAGCGATGTAACGGCAATTGGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E425849" ref_strand="+" ref_description="SGN-E425849 [STM-45-N7]">
      <seq>gcccccacaactcaattacctattcatagatccgatatttgctcaaatttgtgtttataaagttcctatctttgtggggttttggagttttttcttgtaatttgctagaaaaaaatttaattctgttttgtttgttcaagtttgtgctttggggttattgtttcttgatgatttatttcgacttagattataagatttccccgccaagtccttcattttcttattcaatttcatcgaattttcttacatctgatattttcttgataaagtgtgttgattgtttccattttcgtataaaagattgtttttgtgaagggaaaatgggggatcgtttaaggtcaacttcaatggaggatttgccagtacatttgattcttgaaatattgttgtcgggtcgattagctgttattgatttaataagcttagagctaacttcaaggacttttaggggaacacatggtttgtttcctaaaaagttcaagtctttggtagattatgctgcttttcagctttgtggattgagttcaatctatgcttctttgcattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="-" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="9800" stop="8653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9500" g_stop="8953" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="-" ref_id="SGN-E425849" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E425849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9500" e_stop="8953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCCCTCAACTCAATTTTC-ATTCATAGATCCGATATTTGCTCAAATTTGTGTTTATAAAGTTCCTATCTTTGTGGGGTTTTGGAGTTTTTTCTTGTAATTTGGTAGAAAAAGAGTTTAATTTTGTTTTGTTTGTTCAAGTTTGTGTTTTGGGGTTGTTGTTTCTTGATGATTTATTTCGACTTAGATTATAAGATTTCCCCACCAAGTCCTTCATTTTCTTATTCAATTTCATCAAATTTTCTTACATCTGATATTTTCTTGATAAAGTGTGTTAATTGTTTCCATTTTCGTATAAAAGATTGTTTTTGTGAAGGGAAAATGGGGGATCGTTTGAGGTCAACTTTAATGGAGGATTTGCCAGTACATTTGATTCTTGAAATATTGATGTGCGGTCGATTAGCTGTTATTGATTTAATAAGTTTAGAGCTAACTTCAAGGACTTTTAGGGGAACACATGGTTTGTTTCCTAAAAAGTTCAAGTCTTTGGTAGATTATGCTGCTTTTCAGCTTTGTGGATTGAGTTCAATCTATGCTTCTTTGCATTGT</genome_strand>
        <mrna_strand>GCCCCCACAACTCAATTACCTATTCATAGATCCGATATTTGCTCAAATTTGTGTTTATAAAGTTCCTATCTTTGTGGGGTTTTGGAGTTTTTTCTTGTAATTTGCTAGAAAAA-AATTTAATTCTGTTTTGTTTGTTCAAGTTTGTGCTTTGGGGTTATTGTTTCTTGATGATTTATTTCGACTTAGATTATAAGATTTCCCCGCCAAGTCCTTCATTTTCTTATTCAATTTCATCGAATTTTCTTACATCTGATATTTTCTTGATAAAGTGTGTTGATTGTTTCCATTTTCGTATAAAAGATTGTTTTTGTGAAGGGAAAATGGGGGATCGTTTAAGGTCAACTTCAATGGAGGATTTGCCAGTACATTTGATTCTTGAAATATTGTTGTCGGGTCGATTAGCTGTTATTGATTTAATAAGCTTAGAGCTAACTTCAAGGACTTTTAGGGGAACACATGGTTTGTTTCCTAAAAAGTTCAAGTCTTTGGTAGATTATGCTGCTTTTCAGCTTTGTGGATTGAGTTCAATCTATGCTTCTTTGCATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301706" ref_strand="+" ref_description="SGN-E301706 [cLEW-23-P24]">
      <seq>ttttcattcatagatccgatatttgctcaaatttgtgtttataaagttcctatctttgtggggttttggagttttttcttgtaatttggtagaaaaagagtttaattttgttttgtttgttcaagtttgtgttttggggttgttgtttcttgatgatttatttcgacttagattataagatttccccaccaagtccttcattttcttattcaatttcatcaaattttcttacatctgatattttcttgataaagtgtgttaattgtttccattttcgtataaaagattgtttttgtgaatggaaaatgggggatcgtttgaggtcaactttaatggaggatttgccagttcatttgattcttgaaatattgatgtgcggtcgattagctgttattgattttataagtttagagctaacttcaaagacttttaagggaacacatggtttggttcctaaaaagttcaagtctttggtagattatgctgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="-" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="9785" stop="8696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9485" g_stop="8996" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="-" ref_id="SGN-E301706" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9485" e_stop="8996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCATTCATAGATCCGATATTTGCTCAAATTTGTGTTTATAAAGTTCCTATCTTTGTGGGGTTTTGGAGTTTTTTCTTGTAATTTGGTAGAAAAAGAGTTTAATTTTGTTTTGTTTGTTCAAGTTTGTGTTTTGGGGTTGTTGTTTCTTGATGATTTATTTCGACTTAGATTATAAGATTTCCCCACCAAGTCCTTCATTTTCTTATTCAATTTCATCAAATTTTCTTACATCTGATATTTTCTTGATAAAGTGTGTTAATTGTTTCCATTTTCGTATAAAAGATTGTTTTTGTGAAGGGAAAATGGGGGATCGTTTGAGGTCAACTTTAATGGAGGATTTGCCAGTACATTTGATTCTTGAAATATTGATGTGCGGTCGATTAGCTGTTATTGATTTAATAAGTTTAGAGCTAACTTCAAGGACTTTTAGGGGAACACATGGTTTGTTTCCTAAAAAGTTCAAGTCTTTGGTAGATTATGCTGCTTT</genome_strand>
        <mrna_strand>TTTTCATTCATAGATCCGATATTTGCTCAAATTTGTGTTTATAAAGTTCCTATCTTTGTGGGGTTTTGGAGTTTTTTCTTGTAATTTGGTAGAAAAAGAGTTTAATTTTGTTTTGTTTGTTCAAGTTTGTGTTTTGGGGTTGTTGTTTCTTGATGATTTATTTCGACTTAGATTATAAGATTTCCCCACCAAGTCCTTCATTTTCTTATTCAATTTCATCAAATTTTCTTACATCTGATATTTTCTTGATAAAGTGTGTTAATTGTTTCCATTTTCGTATAAAAGATTGTTTTTGTGAATGGAAAATGGGGGATCGTTTGAGGTCAACTTTAATGGAGGATTTGCCAGTTCATTTGATTCTTGAAATATTGATGTGCGGTCGATTAGCTGTTATTGATTTTATAAGTTTAGAGCTAACTTCAAAGACTTTTAAGGGAACACATGGTTTGGTTCCTAAAAAGTTCAAGTCTTTGGTAGATTATGCTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452162" ref_strand="+" ref_description="SGN-E452162 [cSTS-15-H24]">
      <seq>aaaaagttaattttgtttgtttgttcaagtttgtgctttggggttattgtttcttgatgatttatttcgacttagattataagatttccccgccaagtccttgattttcttattcaatttcatcgaattttcttacatctgataatttcttgataaagtgtgttgattgtttccattttcgtttaaaagattgtttttgtgaagggaaaatgggggatcgtttgaggtcaacttcaatggaggatttgccagcacatttgattcttgaaatattgatgtcgggtcgattagctgttattgattgaatgagttgagagctaacttgagggacttgtaggggaacacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="-" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="9692" stop="8742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9391" g_stop="9042" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="-" ref_id="SGN-E452162" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E452162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9391" e_stop="9042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGTTTAATTTTGTTTTGTTTGTTCAAGTTTGTGTTTTGGGGTTGTTGTTTCTTGATGATTTATTTCGACTTAGATTATAAGATTTCCCCACCAAGTCCTTCATTTTCTTATTCAATTTCATCAAATTTTCTTACATCTGATATTTTCTTGATAAAGTGTGTTAATTGTTTCCATTTTCGTATAAAAGATTGTTTTTGTGAAGGGAAAATGGGGGATCGTTTGAGGTCAACTTTAATGGAGGATTTGCCAGTACATTTGATTCTTGAAATATTGATGTGCGGTCGATTAGCTGTTATTGATTTAATAAGTTTAGAGCTAACTTCAAGGACTTTTAGGGGAACACATG</genome_strand>
        <mrna_strand>AAAAAGT-TAATTTTG-TTTGTTTGTTCAAGTTTGTGCTTTGGGGTTATTGTTTCTTGATGATTTATTTCGACTTAGATTATAAGATTTCCCCGCCAAGTCCTTGATTTTCTTATTCAATTTCATCGAATTTTCTTACATCTGATAATTTCTTGATAAAGTGTGTTGATTGTTTCCATTTTCGTTTAAAAGATTGTTTTTGTGAAGGGAAAATGGGGGATCGTTTGAGGTCAACTTCAATGGAGGATTTGCCAGCACATTTGATTCTTGAAATATTGATGTCGGGTCGATTAGCTGTTATTGATTGAATGAGTTGAGAGCTAACTTGAGGGACTTGTAGGGGAACACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263158" ref_strand="+" ref_description="SGN-E263158 [cLEG-62-C10]">
      <seq>caaggacccctcaactcaattttcattcatagatccgatatttgctcaaatttgtgtttataaagttcctatctttgtngggttttggagttttttcttgtaatttggtagaaaaagagtttaattttgttttgtttgttcaagtttgtgttttggggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="-" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="9804" stop="9045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9504" g_stop="9345" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="-" ref_id="SGN-E263158" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>160</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9504" e_stop="9345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGACCCCTCAACTCAATTTTCATTCATAGATCCGATATTTGCTCAAATTTGTGTTTATAAAGTTCCTATCTTTGTGGGGTTTTGGAGTTTTTTCTTGTAATTTGGTAGAAAAAGAGTTTAATTTTGTTTTGTTTGTTCAAGTTTGTGTTTTGGGGTT</genome_strand>
        <mrna_strand>CAAGGACCCCTCAACTCAATTTTCATTCATAGATCCGATATTTGCTCAAATTTGTGTTTATAAAGTTCCTATCTTTGTNGGGTTTTGGAGTTTTTTCTTGTAATTTGGTAGAAAAAGAGTTTAATTTTGTTTTGTTTGTTCAAGTTTGTGTTTTGGGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473102" ref_strand="+" ref_description="SGN-E473102 [cSTB-31-K17]">
      <seq>cttcgccagtaaatttggtgtctttcctagttggacatttttgtctgtaaatcttttttttttttctgtgccttgctcgttaatctttaatactaaattctccagtcagcatttcggtttattaaagctttaaacttttagtcgctttcctcttttcccacttctatataaaagaaaaaaattccactattggactgtttcttgacctagttttagcttaatttcttgtttaacaaggcccccacaactcaattttcattcatagatcctatatttgctcaaatttgtgtttataaagatcctatctttgtggggttttggtgttttttcttgtaattggctagaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="-" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="10031" stop="9089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9733" g_stop="9388" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="-" ref_id="SGN-E473102" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>346</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E473102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9733" e_stop="9388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGCCTGTAA-TTTGGTGTCTTTCCTAGTTGGACATTTTTGTCTGTAAATC--TTTTTTTTTTCTCTGCCTTGCTTGTTAATCTTTAATACTTTATTCTTCAGTCAGCATTTTGGTTTATTAAAGCTTT-AACTTTTAGTCGCTTTCATCTTTTTGCCACTTCTATAT-AAAGAAAAAAATTCCACTATTAGACTGTTTCTTTACCTACTTTTAGCTTAATTTCTTGTTTATCAAGGACCCCTCAACTCAATTTTCATTCATAGATCCGATATTTGCTCAAATTTGTGTTTATAAAGTTCCTATCTTTGTGGGGTTTTGGAGTTTTTTCTTGTAATTTGGTAGAAAAAG</genome_strand>
        <mrna_strand>CTTCGCCAGTAAATTTGGTGTCTTTCCTAGTTGGACATTTTTGTCTGTAAATCTTTTTTTTTTTTCTGTGCCTTGCTCGTTAATCTTTAATACTAAATTCTCCAGTCAGCATTTCGGTTTATTAAAGCTTTAAACTTTTAGTCGCTTTCCTC-TTTTCCCACTTCTATATAAAAGAAAAAAATTCCACTATTGGACTGTTTCTTGACCTAGTTTTAGCTTAATTTCTTGTTTAACAAGGCCCCCACAACTCAATTTTCATTCATAGATCCTATATTTGCTCAAATTTGTGTTTATAAAGATCCTATCTTTGTGGGGTTTTGGTGTTTTTTCTTGTAATTGGCTAGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300966" ref_strand="+" ref_description="SGN-E300966 [cLEW-8-N11]">
      <seq>tggagtgtgtactacaaaccggcctagacgactgaggtattaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatctgcttgacaatgagccatttgctgatgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="+" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="18267" stop="19736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18567" g_stop="18890" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18891" i_stop="19234" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19235" g_stop="19368" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="458" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19369" i_stop="19633" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19634" g_stop="19680" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="505" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="+" ref_id="SGN-E300966" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18567" e_stop="18890"/>
          <exon e_start="19235" e_stop="19368"/>
          <exon e_start="19634" e_stop="19680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGTGTATACTACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTT</genome_strand>
        <mrna_strand>TGGAGTGTGTACTACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E447192" ref_strand="+" ref_description="SGN-E447192 [cSTA-25-M23]">
      <seq>gctgcaggaattcgggcgaggtatactccaaaccggccgttattactgaggtataaacgttaatcgccgggtcctaatccctagttttgttcttcgcccctcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtctttggttcggtaatactcgggtggtcaaccagaacgcactggagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="+" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="18297" stop="19570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18572" g_stop="18890" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="338" r_length="319" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18891" i_stop="19234" i_length="344">
            <donor d_prob="0.950" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19235" g_stop="19270" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="374" r_length="36" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="+" ref_id="SGN-E447192" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E447192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18572" e_stop="18890"/>
          <exon e_start="19235" e_stop="19270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATACTACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGT</genome_strand>
        <mrna_strand>GGTATACTCCAAACCGGCCGTTATTACTGAGGTATAAACGTTAATCGCCGGGTCCTAATCCCTAGTTTTGTTCTTCGCCCCTCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCTTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAACGCACTGGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E580548" ref_strand="+" ref_description="SGN-E580548 [5791]">
      <seq>tgtatactcgaaaccggccgagacgactgaggtataagacgttaatcgccgattcctaaaccctagttttcggcttcgtactgatccggagatggcgaagaacgaaagagaggtccggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcggcgcagccaaaaatggccgtagcgccgttactgtgcggcggctcaagatgtacaatacgaggccgaagcgtaatcctcaggggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="+" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="18272" stop="19174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18572" g_stop="18874" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="+" ref_id="SGN-E580548" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>303</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E580548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18572" e_stop="18874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATACTACAAACCGGCCTAGACGACTGAGGTATTA-ACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTA-T-AT-CGGAGATGGCGAAGAA-GAAAGAGAGGT-CGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCA-GGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCA</genome_strand>
        <mrna_strand>TGTATACTCGAAACCGGCCGAGACGACTGAGGTATAAGACGTTAATCGCCGATTCCTAAACCCTAGTTTTCGGCTTCGTACTGATCCGGAGATGGCGAAGAACGAAAGAGAGGTCCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCGGCGCAGCCAAAAATGGCCGTAGCGCCGTTACTGTGCGGCGGCTCAAGATGTACAATACGAGGCCGAAGCGTAATCCTCAGGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467900" ref_strand="+" ref_description="SGN-E467900 [cSTB-2-E19]">
      <seq>cgaggtccaaaccggccgagacgactgaggtataaacgttaatcgccgattcctaaacccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcggcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaatacgaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggcactggagttctttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaacgagcctttcgctgatgctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="+" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="18279" stop="19736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18574" g_stop="18890" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18891" i_stop="19234" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19235" g_stop="19368" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="452" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19369" i_stop="19633" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19634" g_stop="19681" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="500" r_length="48" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="+" ref_id="SGN-E467900" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E467900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18574" e_stop="18890"/>
          <exon e_start="19235" e_stop="19368"/>
          <exon e_start="19634" e_stop="19681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATACTACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAA-CCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTT</genome_strand>
        <mrna_strand>CGAGGTCCAAACCGGCCGAGACGACTGAGGTATAAACGTTAATCGCCGATTCCTAAACCCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCGGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACGAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGCACTGGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAACGAGCCTTTCGCTGATGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E582078" ref_strand="+" ref_description="SGN-E582078 [7711]">
      <seq>ctccaaaccggccgagacgactgaggtataaacgttaatcgtcgattcctaaagccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggcactggagttctttagagaagagctccaaactcggctttccagtaactacaatgttatattaacaaggaaaggaagttgcccatgtcccttttaacatgatcatcagaagcaagtaaaagttcatcttcttgaccaacggagcctttcgctgatgcttttggaccaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="+" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="18278" stop="19736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18578" g_stop="18890" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18891" i_stop="19234" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19235" g_stop="19368" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="451" r_length="137" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19369" i_stop="19633" i_length="265">
            <donor d_prob="0.993" d_score="0.87"/>
            <acceptor a_prob="0.976" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19634" g_stop="19691" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="511" r_length="60" r_score="0.862"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="+" ref_id="SGN-E582078" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E582078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18578" e_stop="18890"/>
          <exon e_start="19235" e_stop="19368"/>
          <exon e_start="19634" e_stop="19691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAA-CCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAA-AA-GAAAGGAAGTTGCCCATGTCCCTTTTAA-ATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGA-CAA-TGAGCCATTTGCTGATGCTTTTGGACCAAAAA</genome_strand>
        <mrna_strand>CTCCAAACCGGCCGAGACGACTGAGGTATAAACGTTAATCGTCGATTCCTAAAGCCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGCACTGGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAACAAGGAAAGGAAGTTGCCCATGTCCCTTTTAACATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACCAACGGAGCCTTTCGCTGATGCTTTTGGACCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442760" ref_strand="+" ref_description="SGN-E442760 [cSTA-34-J6]">
      <seq>ctccaaaccgaccgagacgactgaggtataaacgttgatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggnccgaagncgcaatcctcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="+" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="18278" stop="19114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18578" g_stop="18814" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="+" ref_id="SGN-E442760" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>237</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E442760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18578" e_stop="18814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGG-CCGAAG-CGTAATCCTCAG</genome_strand>
        <mrna_strand>CTCCAAACCGACCGAGACGACTGAGGTATAAACGTTGATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGNCCGAAGNCGCAATCCTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452584" ref_strand="+" ref_description="SGN-E452584 [cSTS-17-E6]">
      <seq>tccaaaccggccgagacgactgaggtataaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcggcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaatacgaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggcactggagttctttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaacgagcctttcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="+" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="18279" stop="19736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18579" g_stop="18890" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18891" i_stop="19234" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19235" g_stop="19368" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="446" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19369" i_stop="19633" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19634" g_stop="19736" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="549" r_length="103" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="+" ref_id="SGN-E452584" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18579" e_stop="18890"/>
          <exon e_start="19235" e_stop="19368"/>
          <exon e_start="19634" e_stop="19736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTT</genome_strand>
        <mrna_strand>TCCAAACCGGCCGAGACGACTGAGGTATAAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCGGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACGAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGCACTGGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAACGAGCCTTTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367315" ref_strand="+" ref_description="SGN-E367315 [cLPT-5-L22]">
      <seq>tccaaaccggcctatacgactgaggtattaacgttaatcgccgattcctaaaccctaattttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccgaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtgggcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtgactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtgaaagttcatcttcttgacaatgagccattcgctgatgcttttggaccaaaaacaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="+" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="18279" stop="19736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18579" g_stop="18890" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18891" i_stop="19234" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19235" g_stop="19368" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="446" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19369" i_stop="19633" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19634" g_stop="19696" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="509" r_length="63" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="+" ref_id="SGN-E367315" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18579" e_stop="18890"/>
          <exon e_start="19235" e_stop="19368"/>
          <exon e_start="19634" e_stop="19696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAG</genome_strand>
        <mrna_strand>TCCAAACCGGCCTATACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAATTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCGAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGGCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTGACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTGAAAGTTCATCTTCTTGACAATGAGCCATTCGCTGATGCTTTTGGACCAAAAACAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439773" ref_strand="+" ref_description="SGN-E439773 [cSTA-13-B23]">
      <seq>tccaaaccggccgagacgactgaggtataaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggcactggagttctttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="+" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="18279" stop="19690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18579" g_stop="18890" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18891" i_stop="19234" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19235" g_stop="19368" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="446" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19369" i_stop="19633" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19634" g_stop="19657" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="470" r_length="24" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="+" ref_id="SGN-E439773" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E439773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18579" e_stop="18890"/>
          <exon e_start="19235" e_stop="19368"/>
          <exon e_start="19634" e_stop="19657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGAC</genome_strand>
        <mrna_strand>TCCAAACCGGCCGAGACGACTGAGGTATAAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGCACTGGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443832" ref_strand="+" ref_description="SGN-E443832 [cSTA-40-O23]">
      <seq>tccaaaccggccgagacgactgaggtataaacgctaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactagagttctttagagaagagctccaaactcggctttccagtaactacaatgttatactaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="+" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="18279" stop="19627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18579" g_stop="18890" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18891" i_stop="19234" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19235" g_stop="19327" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="405" r_length="93" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="+" ref_id="SGN-E443832" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E443832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18579" e_stop="18890"/>
          <exon e_start="19235" e_stop="19327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAG</genome_strand>
        <mrna_strand>TCCAAACCGGCCGAGACGACTGAGGTATAAACGCTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTAGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATACTAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E471292" ref_strand="+" ref_description="SGN-E471292 [cSTB-23-D1]">
      <seq>tccaaaccggccgagacgactgaggtataaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcggcgcagccaaaaatggccgtagcgccgctactgtgcggtggctcaagatgtacaatacgaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgtcatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggcactgcagttctttagagaagagctccaaactcggctttccagtaactacaatgttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="+" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="18279" stop="19619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18579" g_stop="18890" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18891" i_stop="19234" i_length="344">
            <donor d_prob="0.950" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19235" g_stop="19319" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="397" r_length="85" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="+" ref_id="SGN-E471292" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E471292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18579" e_stop="18890"/>
          <exon e_start="19235" e_stop="19319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTAT</genome_strand>
        <mrna_strand>TCCAAACCGGCCGAGACGACTGAGGTATAAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCGGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGTGGCTCAAGATGTACAATACGAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGTCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGCACTGCAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437613" ref_strand="+" ref_description="SGN-E437613 [cSTA-4-K8]">
      <seq>ccaaaccggccgagacgactgaggtataaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggcactggagttctttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaacgagcctttcgctgatgcttttggaccaaaaacaaagaggaaacgcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="+" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="18281" stop="19736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18580" g_stop="18890" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18891" i_stop="19234" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19235" g_stop="19368" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="445" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19369" i_stop="19633" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19634" g_stop="19708" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="520" r_length="75" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="+" ref_id="SGN-E437613" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E437613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18580" e_stop="18890"/>
          <exon e_start="19235" e_stop="19368"/>
          <exon e_start="19634" e_stop="19708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCC</genome_strand>
        <mrna_strand>CCAAACCGGCCGAGACGACTGAGGTATAAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGCACTGGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAACGAGCCTTTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467398" ref_strand="+" ref_description="SGN-E467398 [cSTB-48-N1]">
      <seq>ccaaaccggccgagactactgaggtataaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcggcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaatacgaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggcactggagttctttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaacgagcctttcgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="+" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="18281" stop="19736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18580" g_stop="18890" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18891" i_stop="19234" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19235" g_stop="19368" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="445" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19369" i_stop="19633" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19634" g_stop="19674" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="486" r_length="41" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="+" ref_id="SGN-E467398" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E467398" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18580" e_stop="18890"/>
          <exon e_start="19235" e_stop="19368"/>
          <exon e_start="19634" e_stop="19674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGA</genome_strand>
        <mrna_strand>CCAAACCGGCCGAGACTACTGAGGTATAAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCGGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACGAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGCACTGGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAACGAGCCTTTCGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269760" ref_strand="+" ref_description="SGN-E269760 [cLEM-17-H8]">
      <seq>acaaaccggcctagacgactgaggtattaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaaatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="+" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="18280" stop="19659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18580" g_stop="18890" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18891" i_stop="19234" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19235" g_stop="19359" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="437" r_length="126" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="+" ref_id="SGN-E269760" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18580" e_stop="18890"/>
          <exon e_start="19235" e_stop="19359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTT-AAATGAT</genome_strand>
        <mrna_strand>ACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAAATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E485094" ref_strand="+" ref_description="SGN-E485094 [cSTE-16-D11]">
      <seq>ccaaaccggccgagacgactgaggtataaacgctaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactagagttctttagagagagctcaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="+" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="18281" stop="19592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18580" g_stop="18890" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18891" i_stop="19234" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19235" g_stop="19292" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="367" r_length="56" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="+" ref_id="SGN-E485094" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E485094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18580" e_stop="18890"/>
          <exon e_start="19235" e_stop="19292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAAC</genome_strand>
        <mrna_strand>CCAAACCGGCCGAGACGACTGAGGTATAAACGCTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTAGAGTTCTTTAGAG-AGAGCT-CAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468952" ref_strand="+" ref_description="SGN-E468952 [cSTB-9-J2]">
      <seq>cctcgtgccgaaaccggccgagacgactgaggtataaacgctaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactagagttctttagagaagagctccaaactcggctttccagtaactacaatgttatactaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaatgagcctttcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="+" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="18282" stop="19736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18582" g_stop="18890" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="319" r_length="309" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18891" i_stop="19234" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19235" g_stop="19368" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="453" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19369" i_stop="19633" i_length="265">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19634" g_stop="19736" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="556" r_length="103" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="+" ref_id="SGN-E468952" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E468952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18582" e_stop="18890"/>
          <exon e_start="19235" e_stop="19368"/>
          <exon e_start="19634" e_stop="19736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTT</genome_strand>
        <mrna_strand>AAACCGGCCGAGACGACTGAGGTATAAACGCTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTAGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATACTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAATGAGCCTTTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205947" ref_strand="+" ref_description="SGN-E205947 [cLEC-20-K17]">
      <seq>aaaccggcctagacgactgaggtattaacgttaatcgccgggtcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatctgcttgacaatgagccatttgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttaatgaagaaggttgatgtgtctcatgatgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="+" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="18282" stop="19736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18582" g_stop="18890" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18891" i_stop="19234" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19235" g_stop="19368" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="443" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19369" i_stop="19633" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19634" g_stop="19736" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="546" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="+" ref_id="SGN-E205947" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18582" e_stop="18890"/>
          <exon e_start="19235" e_stop="19368"/>
          <exon e_start="19634" e_stop="19736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTT</genome_strand>
        <mrna_strand>AAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGGGTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249811" ref_strand="+" ref_description="SGN-E249811 [cLEF-57-J18]">
      <seq>aaccggcctagacgactgaggtattaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatctgcttgacaatgagccatttgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="+" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="18283" stop="19736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18583" g_stop="18890" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18891" i_stop="19234" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19235" g_stop="19368" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="442" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19369" i_stop="19633" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19634" g_stop="19716" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="525" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="+" ref_id="SGN-E249811" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18583" e_stop="18890"/>
          <exon e_start="19235" e_stop="19368"/>
          <exon e_start="19634" e_stop="19716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTAT</genome_strand>
        <mrna_strand>AACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442230" ref_strand="+" ref_description="SGN-E442230 [cSTA-32-K14]">
      <seq>aaccggccgagacgactgaggtataaacgctaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactagagttctttagagaagagctccaaactcggctttccagtaactacaatgttatactaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaatgagcctttcgctgatgcttttggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="+" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="18283" stop="19736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18583" g_stop="18890" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18891" i_stop="19234" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19235" g_stop="19368" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="442" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19369" i_stop="19633" i_length="265">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19634" g_stop="19685" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="494" r_length="52" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="+" ref_id="SGN-E442230" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E442230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18583" e_stop="18890"/>
          <exon e_start="19235" e_stop="19368"/>
          <exon e_start="19634" e_stop="19685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGAC</genome_strand>
        <mrna_strand>AACCGGCCGAGACGACTGAGGTATAAACGCTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTAGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATACTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAATGAGCCTTTCGCTGATGCTTTTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E471727" ref_strand="+" ref_description="SGN-E471727 [cSTB-25-C22]">
      <seq>aaccggccgagacgactgaggtataaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcggcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaatacgaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggcactggagttctttagagaagagctccaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="+" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="18283" stop="19594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18583" g_stop="18890" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18891" i_stop="19234" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19235" g_stop="19294" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="368" r_length="60" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="+" ref_id="SGN-E471727" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E471727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18583" e_stop="18890"/>
          <exon e_start="19235" e_stop="19294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTC</genome_strand>
        <mrna_strand>AACCGGCCGAGACGACTGAGGTATAAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCGGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACGAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGCACTGGAGTTCTTTAGAGAAGAGCTCCAAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301598" ref_strand="+" ref_description="SGN-E301598 [cLEW-23-L14]">
      <seq>accggctctagacgactgaggtattaacggggatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatctgcttgacaatgagccatttgctgatgctttttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="+" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="18284" stop="19736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18584" g_stop="18890" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18891" i_stop="19234" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19235" g_stop="19368" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="442" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19369" i_stop="19633" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19634" g_stop="19684" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="494" r_length="52" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="+" ref_id="SGN-E301598" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18584" e_stop="18890"/>
          <exon e_start="19235" e_stop="19368"/>
          <exon e_start="19634" e_stop="19684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGGC-CTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGC-TTTTGGA</genome_strand>
        <mrna_strand>ACCGGCTCTAGACGACTGAGGTATTAACGGGGATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437061" ref_strand="+" ref_description="SGN-E437061 [cSTA-2-F23]">
      <seq>ccgaccgagacgactgaggtataaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgcaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgccgttggttcggtaatactcgggtggtcaaccagaaggcactggagttctttagagaagagctccaaactcggctttccagtaactataatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaacgagcctttcgctgatgcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="+" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="18285" stop="19736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18585" g_stop="18890" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18891" i_stop="19234" i_length="344">
            <donor d_prob="0.950" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19235" g_stop="19368" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="440" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19369" i_stop="19633" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19634" g_stop="19682" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="489" r_length="49" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="+" ref_id="SGN-E437061" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E437061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18585" e_stop="18890"/>
          <exon e_start="19235" e_stop="19368"/>
          <exon e_start="19634" e_stop="19682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTG</genome_strand>
        <mrna_strand>CCGACCGAGACGACTGAGGTATAAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGCAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGCCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGCACTGGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTATAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAACGAGCCTTTCGCTGATGCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E400250" ref_strand="+" ref_description="SGN-E400250 [cSTC-6-C9]">
      <seq>ccggccgagactactgaggtataaacgctaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactagagttctttagagaagagctccaaactcggctttccagtaactacaatgttatactaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaatgagcctttcgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="+" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="18285" stop="19736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18585" g_stop="18890" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18891" i_stop="19234" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19235" g_stop="19368" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="440" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19369" i_stop="19633" i_length="265">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19634" g_stop="19674" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="481" r_length="41" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="+" ref_id="SGN-E400250" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E400250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18585" e_stop="18890"/>
          <exon e_start="19235" e_stop="19368"/>
          <exon e_start="19634" e_stop="19674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGA</genome_strand>
        <mrna_strand>CCGGCCGAGACTACTGAGGTATAAACGCTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTAGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATACTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAATGAGCCTTTCGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247188" ref_strand="+" ref_description="SGN-E247188 [cLEF-46-P18]">
      <seq>cggcctagacgactgaggtattaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatctgcttgacaatgagccatttgctgatgcttttggaccaaaaacaaagaggaaacgccccaaactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="+" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="18286" stop="19736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18586" g_stop="18890" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18891" i_stop="19234" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19235" g_stop="19368" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="439" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19369" i_stop="19633" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19634" g_stop="19715" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="521" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="+" ref_id="SGN-E247188" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18586" e_stop="18890"/>
          <exon e_start="19235" e_stop="19368"/>
          <exon e_start="19634" e_stop="19715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTA</genome_strand>
        <mrna_strand>CGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264501" ref_strand="+" ref_description="SGN-E264501 [cLEG-67-K1]">
      <seq>cggcctagacgactgaggtattaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtccctttttaatgatcatcagaagcaagtaaaagttcatctgcttgacaatgagccatttgctgatgcttttggaccaaaacaaagaggaaacgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="+" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="18286" stop="19736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18586" g_stop="18890" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18891" i_stop="19234" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19235" g_stop="19368" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="439" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19369" i_stop="19633" i_length="265">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19634" g_stop="19707" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="512" r_length="73" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="+" ref_id="SGN-E264501" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18586" e_stop="18890"/>
          <exon e_start="19235" e_stop="19368"/>
          <exon e_start="19634" e_stop="19707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCC</genome_strand>
        <mrna_strand>CGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTTAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACC-AAAACAAAGAGGAAACGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263993" ref_strand="+" ref_description="SGN-E263993 [cLEG-64-N11]">
      <seq>cggcctagacgactgaggtattaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatctgcttgacaatgagccatttgctgatgcttttngacccaaaaccaagaggaaacgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="+" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="18286" stop="19736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18586" g_stop="18890" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18891" i_stop="19234" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19235" g_stop="19368" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="439" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19369" i_stop="19633" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19634" g_stop="19705" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="511" r_length="72" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="+" ref_id="SGN-E263993" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18586" e_stop="18890"/>
          <exon e_start="19235" e_stop="19368"/>
          <exon e_start="19634" e_stop="19705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGC</genome_strand>
        <mrna_strand>CGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTNGACCCAAAACCAAGAGGAAACGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286374" ref_strand="+" ref_description="SGN-E286374 [cLES-11-H9]">
      <seq>cggcctagacgactgaggtattaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaatacccagccga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="+" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="18286" stop="19100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18586" g_stop="18800" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="+" ref_id="SGN-E286374" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>215</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18586" e_stop="18800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGA</genome_strand>
        <mrna_strand>CGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCCAGCCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482788" ref_strand="+" ref_description="SGN-E482788 [cSTE-5-I4]">
      <seq>aagactgaggtataaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagaagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagaatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggcactggagttctttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaacgagcctttcgctgatgcttttggaccanaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaagttgatgtgtctcatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="+" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="18294" stop="19736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18594" g_stop="18890" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18891" i_stop="19234" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19235" g_stop="19368" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="433" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19369" i_stop="19633" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19634" g_stop="19736" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="536" r_length="103" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="+" ref_id="SGN-E482788" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E482788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18594" e_stop="18890"/>
          <exon e_start="19235" e_stop="19368"/>
          <exon e_start="19634" e_stop="19736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAG-AGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAG-ATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTT</genome_strand>
        <mrna_strand>AAGACTGAGGTATAAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGAATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGCACTGGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAACGAGCCTTTCGCTGATGCTTTTGGACCANAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E440236" ref_strand="+" ref_description="SGN-E440236 [cSTA-16-C15]">
      <seq>gaggtataaacgctaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="+" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="18300" stop="19179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18600" g_stop="18879" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="+" ref_id="SGN-E440236" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>280</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E440236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18600" e_stop="18879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCG</genome_strand>
        <mrna_strand>GAGGTATAAACGCTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E411578" ref_strand="+" ref_description="SGN-E411578 [STM-14-N6]">
      <seq>gttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactagagttctttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaatgagcctttcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggntgatgtgtctcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="+" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="18311" stop="19736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18611" g_stop="18890" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18891" i_stop="19234" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19235" g_stop="19368" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="414" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19369" i_stop="19633" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19634" g_stop="19736" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="517" r_length="103" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="+" ref_id="SGN-E411578" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E411578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18611" e_stop="18890"/>
          <exon e_start="19235" e_stop="19368"/>
          <exon e_start="19634" e_stop="19736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTT</genome_strand>
        <mrna_strand>GTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTAGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAATGAGCCTTTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469097" ref_strand="+" ref_description="SGN-E469097 [cSTB-10-O6]">
      <seq>gttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactagagttctttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaatgagcctttcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaaggtgatgtgtctcatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="+" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="18311" stop="19736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18611" g_stop="18890" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18891" i_stop="19234" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19235" g_stop="19368" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="414" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19369" i_stop="19633" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19634" g_stop="19736" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="517" r_length="103" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="+" ref_id="SGN-E469097" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E469097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18611" e_stop="18890"/>
          <exon e_start="19235" e_stop="19368"/>
          <exon e_start="19634" e_stop="19736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTT</genome_strand>
        <mrna_strand>GTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTAGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAATGAGCCTTTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E440695" ref_strand="+" ref_description="SGN-E440695 [cSTA-18-F6]">
      <seq>aatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtaccaataccaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactagagttctttagagaagagctccaaactcggctttccagtaactacaatgttatactaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaatgagcctttcgctgatgctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="+" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="18314" stop="19736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18614" g_stop="18890" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18891" i_stop="19234" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19235" g_stop="19368" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="412" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19369" i_stop="19633" i_length="265">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19634" g_stop="19681" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="460" r_length="48" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="+" ref_id="SGN-E440695" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E440695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18614" e_stop="18890"/>
          <exon e_start="19235" e_stop="19368"/>
          <exon e_start="19634" e_stop="19681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTA-CAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTT</genome_strand>
        <mrna_strand>AATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACCAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTAGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATACTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAATGAGCCTTTCGCTGATGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E562192" ref_strand="+" ref_description="SGN-E562192 [632]">
      <seq>ttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggcactggagttctttagagaagagctccaaactcggctttccagtaactacaatgttatactaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtacaagttcatcttcttgacaacgagccctttcgctgatgctttttggaccaaaaacaaagaggaaacgcccgaaacttatgggcattagattatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-SbJ03/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="+" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="18337" stop="19736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18637" g_stop="18890" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18891" i_stop="19234" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19235" g_stop="19368" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="388" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19369" i_stop="19633" i_length="265">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19634" g_stop="19731" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="489" r_length="101" r_score="0.888"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="+" ref_id="SGN-E562192" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E562192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18637" e_stop="18890"/>
          <exon e_start="19235" e_stop="19368"/>
          <exon e_start="19634" e_stop="19731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTT-GCTGATGC-TTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTAT-GGCATTAGATTATGA</genome_strand>
        <mrna_strand>TTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGCACTGGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATACTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTACAAGTTCATCTTCTTGACAACGAGCCCTTTCGCTGATGCTTTTTGGACCAAAAACAAAGAGGAAACGCCCGAAACTTATGGGCATTAGATTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>58</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1769" PGL_stop="2292"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1769" e_stop="2292"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="1769" e_stop="2292" e_length="524"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1769" stop="2292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273238" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTGAGGTGAAATTTTTGTAATTTACTTTTCTATACAACTTATTAGAGTATGATAAGATAGAATGTTTCACGTTACCTTTTAACAATACATCATATGATAATACATCTACCTTACATAAAAAAGATTAACATAGCCAATTCTACAACCCACAACATGTTCATTCTGTATGTACAAAACTAGAGTGATTGTGTTCATTTTCTGTATGTACAAAACTAGAGTTCATAAGCAGGGAACCTTGTTTCTATTGGATCTATCATGTCGAAAAAGAGATAAGCCATTCCTCCCATTCCTTCAAACAACGAGTATGGACGATCACCTCCATGCATAACTCCCTCTGATATGAGTGTTTGAGCTCTAGTGTGCAGAAAGCACGCGAAGGCCTTTGCCTTGTACAAGTACTCAACTTTACCTGTCAAACGATACAGTGAAAGAAAGACATAGGAATTTCCACTAACACCGTGACATATTCCAACTCGTTTGAGTAAGCCTCGATTCCAAATCACCTCAGCTGCTTCTATAGCT</gDNA_template>
            <first_frame> F  *  G  E  I  F  V  I  Y  F  S  I  Q  L  I  R  V  *  *  D  R  M  F  H  V  T  F  *  Q  Y  I  I  *  *  Y  I  Y  L  T  *  K  R  L  T  *  P  I  L  Q  P  T  T  C  S  F  C  M  Y  K  T  R  V  I  V  F  I  F  C  M  Y  K  T  R  V  H  K  Q  G  T  L  F  L  L  D  L  S  C  R  K  R  D  K  P  F  L  P  F  L  Q  T  T  S  M  D  D  H  L  H  A  *  L  P  L  I  *  V  F  E  L  *  C  A  E  S  T  R  R  P  L  P  C  T  S  T  Q  L  Y  L  S  N  D  T  V  K  E  R  H  R  N  F  H  *  H  R  D  I  F  Q  L  V  *  V  S  L  D  S  K  S  P  Q  L  L  L  *   </first_frame>
            <second_frame>  F  E  V  K  F  L  *  F  T  F  L  Y  N  L  L  E  Y  D  K  I  E  C  F  T  L  P  F  N  N  T  S  Y  D  N  T  S  T  L  H  K  K  D  *  H  S  Q  F  Y  N  P  Q  H  V  H  S  V  C  T  K  L  E  *  L  C  S  F  S  V  C  T  K  L  E  F  I  S  R  E  P  C  F  Y  W  I  Y  H  V  E  K  E  I  S  H  S  S  H  S  F  K  Q  R  V  W  T  I  T  S  M  H  N  S  L  *  Y  E  C  L  S  S  S  V  Q  K  A  R  E  G  L  C  L  V  Q  V  L  N  F  T  C  Q  T  I  Q  *  K  K  D  I  G  I  S  T  N  T  V  T  Y  S  N  S  F  E  *  A  S  I  P  N  H  L  S  C  F  Y  S  </second_frame>
            <third_frame>   L  R  *  N  F  C  N  L  L  F  Y  T  T  Y  *  S  M  I  R  *  N  V  S  R  Y  L  L  T  I  H  H  M  I  I  H  L  P  Y  I  K  K  I  N  I  A  N  S  T  T  H  N  M  F  I  L  Y  V  Q  N  *  S  D  C  V  H  F  L  Y  V  Q  N  *  S  S  *  A  G  N  L  V  S  I  G  S  I  M  S  K  K  R  *  A  I  P  P  I  P  S  N  N  E  Y  G  R  S  P  P  C  I  T  P  S  D  M  S  V  *  A  L  V  C  R  K  H  A  K  A  F  A  L  Y  K  Y  S  T  L  P  V  K  R  Y  S  E  R  K  T  *  E  F  P  L  T  P  *  H  I  P  T  R  L  S  K  P  R  F  Q  I  T  S  A  A  S  I  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0129L05.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1904" stop="2098"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PILQPTTCSFCMYKTRVIVFIFCMYKTRVHKQGTLFLLDLSCRKRDKPFLPFLQTTSMDDHLHA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="4464" PGL_stop="2285"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4464" e_stop="4170"/>
            <exon e_start="4078" e_stop="3900"/>
            <exon e_start="3169" e_stop="3058"/>
            <exon e_start="2984" e_stop="2868"/>
            <exon e_start="2786" e_stop="2475"/>
            <exon e_start="2321" e_stop="2285"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.976" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.790" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.945" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4464" e_stop="4170" e_length="295"/>
          </exon>
          <intron i_serial="1" don_prob="0.976" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4169" i_stop="4079" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4078" e_stop="3900" e_length="179"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.983">
            <gDNA_intron_boundary i_start="3899" i_stop="3170" i_length="730"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="3169" e_stop="3058" e_length="112"/>
          </exon>
          <intron i_serial="3" don_prob="0.967" acc_prob="0.989">
            <gDNA_intron_boundary i_start="3057" i_stop="2985" i_length="73"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="2984" e_stop="2868" e_length="117"/>
          </exon>
          <intron i_serial="4" don_prob="0.790" acc_prob="0.996">
            <gDNA_intron_boundary i_start="2867" i_stop="2787" i_length="81"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="2786" e_stop="2475" e_length="312"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.945">
            <gDNA_intron_boundary i_start="2474" i_stop="2322" i_length="153"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="2321" e_stop="2285" e_length="37"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4464" stop="4170"/>
              <exon start="4078" stop="3955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4456" stop="4170"/>
              <exon start="4078" stop="3900"/>
              <exon start="3169" stop="3058"/>
              <exon start="2984" stop="2893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4456" stop="4170"/>
              <exon start="4078" stop="3900"/>
              <exon start="3169" stop="3058"/>
              <exon start="2984" stop="2925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4453" stop="4170"/>
              <exon start="4078" stop="3900"/>
              <exon start="3169" stop="3123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4421" stop="4170"/>
              <exon start="4078" stop="3900"/>
              <exon start="3169" stop="3058"/>
              <exon start="2984" stop="2898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4420" stop="4170"/>
              <exon start="4078" stop="3900"/>
              <exon start="3169" stop="3058"/>
              <exon start="2984" stop="2911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2963" stop="2868"/>
              <exon start="2786" stop="2475"/>
              <exon start="2321" stop="2285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241430" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATAAAGAAAAAAACTTACACTACCCCGGATAGACTTGCTCTGTTCTGTCTTCTGAGAACCACCGGAGCTCTGTTCTTTCCATAAATTTGTTCCGGCGGAGGATTCAACAGAACCGGAAATAAAGAGATGCCAGATCGTTTCTTTCCAAACACCATGCCTAGTTTTGTTGATGAAACTACAGTTAAAGAATCATTTCTTGAAGGAGCAAAAGATCCATTGTTAGAGCTTCTGTATTTGCCTTATGGTACTGTTTGCGACAAGCTCAAAAGGGTTGCTTTTGATCTCAAAGAAACG : ATTGTGAAGGAGACATGGGTATGTAAAAGGGGAAGAGTGAGTGACTATACAATTTACACTGGAGCTTTAGGAACTGCTTTTTTGTTATTTAAAGCTTACCAAGTTACTCTTGACAAGAATGATCTTGCTCTCTGTTCTGATATTATCAAGGCTTGTGACTCTGCTTCCCGTGGTTCTGG : GCGTGTGACTTTCATATGTGGACAAGCTGGTGTTTATTCTCTTGGTGCAGTTGTGGCCAAACAGAGCGGGGATGAACAATTGTGTGATCACTATCTGACGAAATTCAAAGAG : ATTGAGCTTCCTAAAGATCTTCCAAATGAGTTGTTGTATGGGAGGGCTGGTTTCTTGTGGGCTTGTTCATTCTTAAACAAAAATATTGGTAGAGAAACAATATCTCCAACCCAAATT : CGAGCAGTTGTTGCTGAGGTTATAAAGTCCGGACGAAAAATGGGGAAAGGAAAATGTCCACTGATGTATGAATGGCATGGAAAAAGATACTGGGGTGCTGCTCATGGACTAGCTGGGATAATGCATGTACTTATGGACATGGAACTGAAAGCAGATGAGGTCGAGGATGTGAAGGCTACACTGCATTACATGATCCGAAATCGTTTTCCTAGTGGAAATTACCCCTCAAGTGAAGGAAGTGAATCTGACCGACTTGTGCATTGGTGTCATGGTGCTCCAGGTGTTGCCCTTACTCTAATCAAAGCAGCTAAG : GTTTTCAGCAATGACGAGTTTCTGCAGGCAGCTATAG</gDNA_template>
            <first_frame> N  K  E  K  N  L  H  Y  P  G  *  T  C  S  V  L  S  S  E  N  H  R  S  S  V  L  S  I  N  L  F  R  R  R  I  Q  Q  N  R  K  *  R  D  A  R  S  F  L  S  K  H  H  A  *  F  C  *  *  N  Y  S  *  R  I  I  S  *  R  S  K  R  S  I  V  R  A  S  V  F  A  L  W  Y  C  L  R  Q  A  Q  K  G  C  F  *  S  Q  R  N   : D  C  E  G  D  M  G  M  *  K  G  K  S  E  *  L  Y  N  L  H  W  S  F  R  N  C  F  F  V  I  *  S  L  P  S  Y  S  *  Q  E  *  S  C  S  L  F  *  Y  Y  Q  G  L  *  L  C  F  P  W  F  W  :  A  C  D  F  H  M  W  T  S  W  C  L  F  S  W  C  S  C  G  Q  T  E  R  G  *  T  I  V  *  S  L  S  D  E  I  Q  R   : D  *  A  S  *  R  S  S  K  *  V  V  V  W  E  G  W  F  L  V  G  L  F  I  L  K  Q  K  Y  W  *  R  N  N  I  S  N  P  N   : S  S  S  C  C  *  G  Y  K  V  R  T  K  N  G  E  R  K  M  S  T  D  V  *  M  A  W  K  K  I  L  G  C  C  S  W  T  S  W  D  N  A  C  T  Y  G  H  G  T  E  S  R  *  G  R  G  C  E  G  Y  T  A  L  H  D  P  K  S  F  S  *  W  K  L  P  L  K  *  R  K  *  I  *  P  T  C  A  L  V  S  W  C  S  R  C  C  P  Y  S  N  Q  S  S  *   : G  F  Q  Q  *  R  V  S  A  G  S  Y   </first_frame>
            <second_frame>  I  K  K  K  T  Y  T  T  P  D  R  L  A  L  F  C  L  L  R  T  T  G  A  L  F  F  P  *  I  C  S  G  G  G  F  N  R  T  G  N  K  E  M  P  D  R  F  F  P  N  T  M  P  S  F  V  D  E  T  T  V  K  E  S  F  L  E  G  A  K  D  P  L  L  E  L  L  Y  L  P  Y  G  T  V  C  D  K  L  K  R  V  A  F  D  L  K  E  T  :  I  V  K  E  T  W  V  C  K  R  G  R  V  S  D  Y  T  I  Y  T  G  A  L  G  T  A  F  L  L  F  K  A  Y  Q  V  T  L  D  K  N  D  L  A  L  C  S  D  I  I  K  A  C  D  S  A  S  R  G  S  G :   R  V  T  F  I  C  G  Q  A  G  V  Y  S  L  G  A  V  V  A  K  Q  S  G  D  E  Q  L  C  D  H  Y  L  T  K  F  K  E  :  I  E  L  P  K  D  L  P  N  E  L  L  Y  G  R  A  G  F  L  W  A  C  S  F  L  N  K  N  I  G  R  E  T  I  S  P  T  Q  I  :  R  A  V  V  A  E  V  I  K  S  G  R  K  M  G  K  G  K  C  P  L  M  Y  E  W  H  G  K  R  Y  W  G  A  A  H  G  L  A  G  I  M  H  V  L  M  D  M  E  L  K  A  D  E  V  E  D  V  K  A  T  L  H  Y  M  I  R  N  R  F  P  S  G  N  Y  P  S  S  E  G  S  E  S  D  R  L  V  H  W  C  H  G  A  P  G  V  A  L  T  L  I  K  A  A  K  :  V  F  S  N  D  E  F  L  Q  A  A  I  </second_frame>
            <third_frame>   *  R  K  K  L  T  L  P  R  I  D  L  L  C  S  V  F  *  E  P  P  E  L  C  S  F  H  K  F  V  P  A  E  D  S  T  E  P  E  I  K  R  C  Q  I  V  S  F  Q  T  P  C  L  V  L  L  M  K  L  Q  L  K  N  H  F  L  K  E  Q  K  I  H  C  *  S  F  C  I  C  L  M  V  L  F  A  T  S  S  K  G  L  L  L  I  S  K  K  R :   L  *  R  R  H  G  Y  V  K  G  E  E  *  V  T  I  Q  F  T  L  E  L  *  E  L  L  F  C  Y  L  K  L  T  K  L  L  L  T  R  M  I  L  L  S  V  L  I  L  S  R  L  V  T  L  L  P  V  V  L   : G  V  *  L  S  Y  V  D  K  L  V  F  I  L  L  V  Q  L  W  P  N  R  A  G  M  N  N  C  V  I  T  I  *  R  N  S  K  R :   L  S  F  L  K  I  F  Q  M  S  C  C  M  G  G  L  V  S  C  G  L  V  H  S  *  T  K  I  L  V  E  K  Q  Y  L  Q  P  K  F :   E  Q  L  L  L  R  L  *  S  P  D  E  K  W  G  K  E  N  V  H  *  C  M  N  G  M  E  K  D  T  G  V  L  L  M  D  *  L  G  *  C  M  Y  L  W  T  W  N  *  K  Q  M  R  S  R  M  *  R  L  H  C  I  T  *  S  E  I  V  F  L  V  E  I  T  P  Q  V  K  E  V  N  L  T  D  L  C  I  G  V  M  V  L  Q  V  L  P  L  L  *  S  K  Q  L  R :   F  S  A  M  T  S  F  C  R  Q  L  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0129L05.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4379" stop="4170"/>
                    <exon start="4078" stop="3900"/>
                    <exon start="3169" stop="3058"/>
                    <exon start="2984" stop="2868"/>
                    <exon start="2786" stop="2475"/>
                    <exon start="2321" stop="2286"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>966</number_coding_nucleotides>
                  <number_encoded_amino_acids>322</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICSGGGFNRTGNKEMPDRFFPNTMPSFVDETTVKESFLEGAKDPLLELLYLPYGTVCDKLKRVAFDLKETIVKETWVCKRGRVSDYTIYTGALGTAFLLFKAYQVTLDKNDLALCSDIIKACDSASRGSGRVTFICGQAGVYSLGAVVAKQSGDEQLCDHYLTKFKEIELPKDLPNELLYGRAGFLWACSFLNKNIGRETISPTQIRAVVAEVIKSGRKMGKGKCPLMYEWHGKRYWGAAHGLAGIMHVLMDMELKADEVEDVKATLHYMIRNRFPSGNYPSSEGSESDRLVHWCHGAPGVALTLIKAAKVFSNDEFLQAAI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="9733" PGL_stop="4836"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9733" e_stop="8842"/>
            <exon e_start="8304" e_stop="8095"/>
            <exon e_start="7274" e_stop="7164"/>
            <exon e_start="6170" e_stop="5802"/>
            <exon e_start="5675" e_stop="5568"/>
            <exon e_start="5387" e_stop="4914"/>
            <exon e_start="4847" e_stop="4836"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.877" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.998"/>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9733" e_stop="8842" e_length="892"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.877">
            <gDNA_intron_boundary i_start="8841" i_stop="8305" i_length="537"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8304" e_stop="8095" e_length="210"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.966">
            <gDNA_intron_boundary i_start="8094" i_stop="7275" i_length="820"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7274" e_stop="7164" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.995">
            <gDNA_intron_boundary i_start="7163" i_stop="6171" i_length="993"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6170" e_stop="5802" e_length="369"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.985">
            <gDNA_intron_boundary i_start="5801" i_stop="5676" i_length="126"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="5675" e_stop="5568" e_length="108"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.962">
            <gDNA_intron_boundary i_start="5567" i_stop="5388" i_length="180"/>
          </intron>
          <exon e_serial="6" e_score="0.998">
            <gDNA_exon_boundary e_start="5387" e_stop="4914" e_length="474"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="4913" i_stop="4848" i_length="66"/>
          </intron>
          <exon e_serial="7" e_score="0.917">
            <gDNA_exon_boundary e_start="4847" e_stop="4836" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9733" stop="9388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9504" stop="9345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9500" stop="8953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9486" stop="8842"/>
              <exon start="8304" stop="8163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9485" stop="8996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9391" stop="8907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9391" stop="9042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9044" stop="8842"/>
              <exon start="8304" stop="8095"/>
              <exon start="7274" stop="7173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9044" stop="8842"/>
              <exon start="8304" stop="8095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8976" stop="8842"/>
              <exon start="8304" stop="8095"/>
              <exon start="7274" stop="7164"/>
              <exon start="6170" stop="5952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8976" stop="8842"/>
              <exon start="8304" stop="8095"/>
              <exon start="7274" stop="7197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8976" stop="8842"/>
              <exon start="8304" stop="8095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8214" stop="8095"/>
              <exon start="7274" stop="7211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8145" stop="8095"/>
              <exon start="7274" stop="7164"/>
              <exon start="6170" stop="6020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6038" stop="5802"/>
              <exon start="5675" stop="5568"/>
              <exon start="5387" stop="4920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5890" stop="5802"/>
              <exon start="5675" stop="5568"/>
              <exon start="5387" stop="4914"/>
              <exon start="4847" stop="4836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5670" stop="5568"/>
              <exon start="5387" stop="4920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734184" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATTGCCTGTAATTTGGTGTCTTTCCTAGTTGGACATTTTTGTCTGTAAATCTTTTTTTTTTCTCTGCCTTGCTTGTTAATCTTTAATACTTTATTCTTCAGTCAGCATTTTGGTTTATTAAAGCTTTAACTTTTAGTCGCTTTCATCTTTTTGCCACTTCTATATAAAGAAAAAAATTCCACTATTAGACTGTTTCTTTACCTACTTTTAGCTTAATTTCTTGTTTATCAAGGACCCCTCAACTCAATTTTCATTCATAGATCCGATATTTGCTCAAATTTGTGTTTATAAAGTTCCTATCTTTGTGGGGTTTTGGAGTTTTTTCTTGTAATTTGGTAGAAAAAGAGTTTAATTTTGTTTTGTTTGTTCAAGTTTGTGTTTTGGGGTTGTTGTTTCTTGATGATTTATTTCGACTTAGATTATAAGATTTCCCCACCAAGTCCTTCATTTTCTTATTCAATTTCATCAAATTTTCTTACATCTGATATTTTCTTGATAAAGTGTGTTAATTGTTTCCATTTTCGTATAAAAGATTGTTTTTGTGAAGGGAAAATGGGGGATCGTTTGAGGTCAACTTTAATGGAGGATTTGCCAGTACATTTGATTCTTGAAATATTGATGTGCGGTCGATTAGCTGTTATTGATTTAATAAGTTTAGAGCTAACTTCAAGGACTTTTAGGGGAACACATGGTTTGTTTCCTAAAAAGTTCAAGTCTTTGGTAGATTATGCTGCTTTTCAGCTTTGTGGATTGAGTTCAATCTATGCTTCTTTGCATTGTAATGCTCAGGAAGAGCTGTTGACGCGATGTAACGGCAATTGGAAGCGTCTTTTGAGGTTCTTGATGGCTGTGGAACAGTCCTCTGATATGGTTGAAACTTCTGCAGGCAAT : ATGCAAATAAGGAGTGGCAGGTATCACACACTGCTAATCAATGATTCAGCAGCATACTCTTGTGGTTCCAGTTTATGCGGCGTCCTTGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTGTTCCCGTACAAGTTGCGCAAGTTTCAGCTTCTCATAATCATGCTGCTTTTGTCACAGGGTCTGGACAG : GTGTTCACATGTGGAGATAACTCATCATTCTGTTGTGGGCATAGAGACACTGGACGCCCAATCTTCAGGCCAAGAATGGTTGAAGCATTGAAAAATATTCCTGTCAAGCAG : GTTGCTGCAGGTCTCAGTTTTACTATGTTTCTCACTAGGAAAGGTCATGTTTTCACATGCGGAACGAACGGACATGGTCAACTTGGTCATGGTGACACATCGGATAGGCCAACACCGACATGTATAGAACTACTCGCATCTATTGGTTCTGTAGTTCAGATTGCTGCTGGACCTAGTTATGCACTTGCAGTGTCTGATGATGGGACTCTATACTCTTTTGGTTCGGGTACTAATTTCTGCCTTGGTCATGGAGAACAGCAGAATGAACTCCAGCCACGTGCAATCCAGTCGTTTAAGAGGAAGGGCATTAATGTGGCTCGTGTTTCTGCTGGAGATGAGCATGTTGTGGCACTGGATTCCACTGGATAT : GTATATACTTGGGGGAAAGGTTATTGCGGTGCATTGGGGCATGGTGATGAGACTGATAAGACTACTCCGTCACACTTGACCAGCCTTAAGAGCCATCTAGCAGTTCAG : GTTTGTGCAAGCAAGAGGAAAACGTTTGTCCTTGTGGACGATGGTTCTGTTTATGGCTTTGGCTGGATGGGTTTTGGTAGCCTCGGATTCCTTGACAGAGGAGCATCAGATAAAGTTTTGAAGCCTCGTATCCTGGAGAGCTTGAGATCCCATCACATATCTCAAATCAGCACTGGCTTATACCACACAGTAGTTGTTACAAATTGTGGACGAGTCTTTGGATTTGGAGACAACGAAAGAGCCCAACTTGGACATGATGCAGTAAGGGGATGCCTTGAACCTACAGAAATGTTTATGGAGAAAGCAATAAGTACAAAATATTGACTGACCAAACAAATATTGTTTCTACATCGTTATATAACATTTCAAAAAATGACTTGAATGTTTTGTGATTAGATCTTTTGTAAAGAACTTTTTTGTTGTATGATACAAAAAAGACAAATCATACATTATTGTCTTCTGAAGTTCATTACA : CAAAAAAAAAAA</gDNA_template>
            <first_frame> H  C  L  *  F  G  V  F  P  S  W  T  F  L  S  V  N  L  F  F  F  S  A  L  L  V  N  L  *  Y  F  I  L  Q  S  A  F  W  F  I  K  A  L  T  F  S  R  F  H  L  F  A  T  S  I  *  R  K  K  F  H  Y  *  T  V  S  L  P  T  F  S  L  I  S  C  L  S  R  T  P  Q  L  N  F  H  S  *  I  R  Y  L  L  K  F  V  F  I  K  F  L  S  L  W  G  F  G  V  F  S  C  N  L  V  E  K  E  F  N  F  V  L  F  V  Q  V  C  V  L  G  L  L  F  L  D  D  L  F  R  L  R  L  *  D  F  P  T  K  S  F  I  F  L  F  N  F  I  K  F  S  Y  I  *  Y  F  L  D  K  V  C  *  L  F  P  F  S  Y  K  R  L  F  L  *  R  E  N  G  G  S  F  E  V  N  F  N  G  G  F  A  S  T  F  D  S  *  N  I  D  V  R  S  I  S  C  Y  *  F  N  K  F  R  A  N  F  K  D  F  *  G  N  T  W  F  V  S  *  K  V  Q  V  F  G  R  L  C  C  F  S  A  L  W  I  E  F  N  L  C  F  F  A  L  *  C  S  G  R  A  V  D  A  M  *  R  Q  L  E  A  S  F  E  V  L  D  G  C  G  T  V  L  *  Y  G  *  N  F  C  R  Q   : Y  A  N  K  E  W  Q  V  S  H  T  A  N  Q  *  F  S  S  I  L  L  W  F  Q  F  M  R  R  P  W  S  W  A  *  N  N  S  V  C  G  I  Y  S  N  *  L  S  C  S  R  T  S  C  A  S  F  S  F  S  *  S  C  C  F  C  H  R  V  W  T   : G  V  H  M  W  R  *  L  I  I  L  L  W  A  *  R  H  W  T  P  N  L  Q  A  K  N  G  *  S  I  E  K  Y  S  C  Q  A   : G  C  C  R  S  Q  F  Y  Y  V  S  H  *  E  R  S  C  F  H  M  R  N  E  R  T  W  S  T  W  S  W  *  H  I  G  *  A  N  T  D  M  Y  R  T  T  R  I  Y  W  F  C  S  S  D  C  C  W  T  *  L  C  T  C  S  V  *  *  W  D  S  I  L  F  W  F  G  Y  *  F  L  P  W  S  W  R  T  A  E  *  T  P  A  T  C  N  P  V  V  *  E  E  G  H  *  C  G  S  C  F  C  W  R  *  A  C  C  G  T  G  F  H  W  I   : C  I  Y  L  G  E  R  L  L  R  C  I  G  A  W  *  *  D  *  *  D  Y  S  V  T  L  D  Q  P  *  E  P  S  S  S  S   : G  L  C  K  Q  E  E  N  V  C  P  C  G  R  W  F  C  L  W  L  W  L  D  G  F  W  *  P  R  I  P  *  Q  R  S  I  R  *  S  F  E  A  S  Y  P  G  E  L  E  I  P  S  H  I  S  N  Q  H  W  L  I  P  H  S  S  C  Y  K  L  W  T  S  L  W  I  W  R  Q  R  K  S  P  T  W  T  *  C  S  K  G  M  P  *  T  Y  R  N  V  Y  G  E  S  N  K  Y  K  I  L  T  D  Q  T  N  I  V  S  T  S  L  Y  N  I  S  K  N  D  L  N  V  L  *  L  D  L  L  *  R  T  F  L  L  Y  D  T  K  K  T  N  H  T  L  L  S  S  E  V  H  Y   : T  K  K  K  </first_frame>
            <second_frame>  I  A  C  N  L  V  S  F  L  V  G  H  F  C  L  *  I  F  F  F  S  L  P  C  L  L  I  F  N  T  L  F  F  S  Q  H  F  G  L  L  K  L  *  L  L  V  A  F  I  F  L  P  L  L  Y  K  E  K  N  S  T  I  R  L  F  L  Y  L  L  L  A  *  F  L  V  Y  Q  G  P  L  N  S  I  F  I  H  R  S  D  I  C  S  N  L  C  L  *  S  S  Y  L  C  G  V  L  E  F  F  L  V  I  W  *  K  K  S  L  I  L  F  C  L  F  K  F  V  F  W  G  C  C  F  L  M  I  Y  F  D  L  D  Y  K  I  S  P  P  S  P  S  F  S  Y  S  I  S  S  N  F  L  T  S  D  I  F  L  I  K  C  V  N  C  F  H  F  R  I  K  D  C  F  C  E  G  K  M  G  D  R  L  R  S  T  L  M  E  D  L  P  V  H  L  I  L  E  I  L  M  C  G  R  L  A  V  I  D  L  I  S  L  E  L  T  S  R  T  F  R  G  T  H  G  L  F  P  K  K  F  K  S  L  V  D  Y  A  A  F  Q  L  C  G  L  S  S  I  Y  A  S  L  H  C  N  A  Q  E  E  L  L  T  R  C  N  G  N  W  K  R  L  L  R  F  L  M  A  V  E  Q  S  S  D  M  V  E  T  S  A  G  N  :  M  Q  I  R  S  G  R  Y  H  T  L  L  I  N  D  S  A  A  Y  S  C  G  S  S  L  C  G  V  L  G  H  G  P  E  T  T  Q  C  V  E  F  T  R  I  S  F  P  V  P  V  Q  V  A  Q  V  S  A  S  H  N  H  A  A  F  V  T  G  S  G  Q  :  V  F  T  C  G  D  N  S  S  F  C  C  G  H  R  D  T  G  R  P  I  F  R  P  R  M  V  E  A  L  K  N  I  P  V  K  Q  :  V  A  A  G  L  S  F  T  M  F  L  T  R  K  G  H  V  F  T  C  G  T  N  G  H  G  Q  L  G  H  G  D  T  S  D  R  P  T  P  T  C  I  E  L  L  A  S  I  G  S  V  V  Q  I  A  A  G  P  S  Y  A  L  A  V  S  D  D  G  T  L  Y  S  F  G  S  G  T  N  F  C  L  G  H  G  E  Q  Q  N  E  L  Q  P  R  A  I  Q  S  F  K  R  K  G  I  N  V  A  R  V  S  A  G  D  E  H  V  V  A  L  D  S  T  G  Y  :  V  Y  T  W  G  K  G  Y  C  G  A  L  G  H  G  D  E  T  D  K  T  T  P  S  H  L  T  S  L  K  S  H  L  A  V  Q  :  V  C  A  S  K  R  K  T  F  V  L  V  D  D  G  S  V  Y  G  F  G  W  M  G  F  G  S  L  G  F  L  D  R  G  A  S  D  K  V  L  K  P  R  I  L  E  S  L  R  S  H  H  I  S  Q  I  S  T  G  L  Y  H  T  V  V  V  T  N  C  G  R  V  F  G  F  G  D  N  E  R  A  Q  L  G  H  D  A  V  R  G  C  L  E  P  T  E  M  F  M  E  K  A  I  S  T  K  Y  *  L  T  K  Q  I  L  F  L  H  R  Y  I  T  F  Q  K  M  T  *  M  F  C  D  *  I  F  C  K  E  L  F  C  C  M  I  Q  K  R  Q  I  I  H  Y  C  L  L  K  F  I  T  :  Q  K  K  K </second_frame>
            <third_frame>   L  P  V  I  W  C  L  S  *  L  D  I  F  V  C  K  S  F  F  F  L  C  L  A  C  *  S  L  I  L  Y  S  S  V  S  I  L  V  Y  *  S  F  N  F  *  S  L  S  S  F  C  H  F  Y  I  K  K  K  I  P  L  L  D  C  F  F  T  Y  F  *  L  N  F  L  F  I  K  D  P  S  T  Q  F  S  F  I  D  P  I  F  A  Q  I  C  V  Y  K  V  P  I  F  V  G  F  W  S  F  F  L  *  F  G  R  K  R  V  *  F  C  F  V  C  S  S  L  C  F  G  V  V  V  S  *  *  F  I  S  T  *  I  I  R  F  P  H  Q  V  L  H  F  L  I  Q  F  H  Q  I  F  L  H  L  I  F  S  *  *  S  V  L  I  V  S  I  F  V  *  K  I  V  F  V  K  G  K  W  G  I  V  *  G  Q  L  *  W  R  I  C  Q  Y  I  *  F  L  K  Y  *  C  A  V  D  *  L  L  L  I  *  *  V  *  S  *  L  Q  G  L  L  G  E  H  M  V  C  F  L  K  S  S  S  L  W  *  I  M  L  L  F  S  F  V  D  *  V  Q  S  M  L  L  C  I  V  M  L  R  K  S  C  *  R  D  V  T  A  I  G  S  V  F  *  G  S  *  W  L  W  N  S  P  L  I  W  L  K  L  L  Q  A  I :   C  K  *  G  V  A  G  I  T  H  C  *  S  M  I  Q  Q  H  T  L  V  V  P  V  Y  A  A  S  L  V  M  G  L  K  Q  L  S  V  W  N  L  L  E  L  A  F  L  F  P  Y  K  L  R  K  F  Q  L  L  I  I  M  L  L  L  S  Q  G  L  D  R :   C  S  H  V  E  I  T  H  H  S  V  V  G  I  E  T  L  D  A  Q  S  S  G  Q  E  W  L  K  H  *  K  I  F  L  S  S  R :   L  L  Q  V  S  V  L  L  C  F  S  L  G  K  V  M  F  S  H  A  E  R  T  D  M  V  N  L  V  M  V  T  H  R  I  G  Q  H  R  H  V  *  N  Y  S  H  L  L  V  L  *  F  R  L  L  L  D  L  V  M  H  L  Q  C  L  M  M  G  L  Y  T  L  L  V  R  V  L  I  S  A  L  V  M  E  N  S  R  M  N  S  S  H  V  Q  S  S  R  L  R  G  R  A  L  M  W  L  V  F  L  L  E  M  S  M  L  W  H  W  I  P  L  D  M :   Y  I  L  G  G  K  V  I  A  V  H  W  G  M  V  M  R  L  I  R  L  L  R  H  T  *  P  A  L  R  A  I  *  Q  F  R :   F  V  Q  A  R  G  K  R  L  S  L  W  T  M  V  L  F  M  A  L  A  G  W  V  L  V  A  S  D  S  L  T  E  E  H  Q  I  K  F  *  S  L  V  S  W  R  A  *  D  P  I  T  Y  L  K  S  A  L  A  Y  T  T  Q  *  L  L  Q  I  V  D  E  S  L  D  L  E  T  T  K  E  P  N  L  D  M  M  Q  *  G  D  A  L  N  L  Q  K  C  L  W  R  K  Q  *  V  Q  N  I  D  *  P  N  K  Y  C  F  Y  I  V  I  *  H  F  K  K  *  L  E  C  F  V  I  R  S  F  V  K  N  F  F  V  V  *  Y  K  K  D  K  S  Y  I  I  V  F  *  S  S  L  H :   K  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0129L05.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9393" stop="8842"/>
                    <exon start="8304" stop="8095"/>
                    <exon start="7274" stop="7164"/>
                    <exon start="6170" stop="5802"/>
                    <exon start="5675" stop="5568"/>
                    <exon start="5387" stop="5064"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1671</number_coding_nucleotides>
                  <number_encoded_amino_acids>557</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKSLILFCLFKFVFWGCCFLMIYFDLDYKISPPSPSFSYSISSNFLTSDIFLIKCVNCFHFRIKDCFCEGKMGDRLRSTLMEDLPVHLILEILMCGRLAVIDLISLELTSRTFRGTHGLFPKKFKSLVDYAAFQLCGLSSIYASLHCNAQEELLTRCNGNWKRLLRFLMAVEQSSDMVETSAGNMQIRSGRYHTLLINDSAAYSCGSSLCGVLGHGPETTQCVEFTRISFPVPVQVAQVSASHNHAAFVTGSGQVFTCGDNSSFCCGHRDTGRPIFRPRMVEALKNIPVKQVAAGLSFTMFLTRKGHVFTCGTNGHGQLGHGDTSDRPTPTCIELLASIGSVVQIAAGPSYALAVSDDGTLYSFGSGTNFCLGHGEQQNELQPRAIQSFKRKGINVARVSAGDEHVVALDSTGYVYTWGKGYCGALGHGDETDKTTPSHLTSLKSHLAVQVCASKRKTFVLVDDGSVYGFGWMGFGSLGFLDRGASDKVLKPRILESLRSHHISQISTGLYHTVVVTNCGRVFGFGDNERAQLGHDAVRGCLEPTEMFMEKAISTKY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="18567" PGL_stop="19736"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18567" e_stop="18890"/>
            <exon e_start="19235" e_stop="19368"/>
            <exon e_start="19634" e_stop="19736"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.950" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.976" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="18567" e_stop="18890" e_length="324"/>
          </exon>
          <intron i_serial="1" don_prob="0.950" acc_prob="0.999">
            <gDNA_intron_boundary i_start="18891" i_stop="19234" i_length="344"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19235" e_stop="19368" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.976">
            <gDNA_intron_boundary i_start="19369" i_stop="19633" i_length="265"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="19634" e_stop="19736" e_length="103"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18567" stop="18890"/>
              <exon start="19235" stop="19368"/>
              <exon start="19634" stop="19680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18572" stop="18890"/>
              <exon start="19235" stop="19270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18572" stop="18874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18574" stop="18890"/>
              <exon start="19235" stop="19368"/>
              <exon start="19634" stop="19681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18578" stop="18890"/>
              <exon start="19235" stop="19368"/>
              <exon start="19634" stop="19691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18578" stop="18814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18579" stop="18890"/>
              <exon start="19235" stop="19368"/>
              <exon start="19634" stop="19736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18579" stop="18890"/>
              <exon start="19235" stop="19368"/>
              <exon start="19634" stop="19696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18579" stop="18890"/>
              <exon start="19235" stop="19368"/>
              <exon start="19634" stop="19657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18579" stop="18890"/>
              <exon start="19235" stop="19327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18579" stop="18890"/>
              <exon start="19235" stop="19319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18580" stop="18890"/>
              <exon start="19235" stop="19368"/>
              <exon start="19634" stop="19708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18580" stop="18890"/>
              <exon start="19235" stop="19368"/>
              <exon start="19634" stop="19674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18580" stop="18890"/>
              <exon start="19235" stop="19359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18580" stop="18890"/>
              <exon start="19235" stop="19292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18582" stop="18890"/>
              <exon start="19235" stop="19368"/>
              <exon start="19634" stop="19736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18582" stop="18890"/>
              <exon start="19235" stop="19368"/>
              <exon start="19634" stop="19736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18583" stop="18890"/>
              <exon start="19235" stop="19368"/>
              <exon start="19634" stop="19716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18583" stop="18890"/>
              <exon start="19235" stop="19368"/>
              <exon start="19634" stop="19685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18583" stop="18890"/>
              <exon start="19235" stop="19294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18584" stop="18890"/>
              <exon start="19235" stop="19368"/>
              <exon start="19634" stop="19684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18585" stop="18890"/>
              <exon start="19235" stop="19368"/>
              <exon start="19634" stop="19682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18585" stop="18890"/>
              <exon start="19235" stop="19368"/>
              <exon start="19634" stop="19674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18586" stop="18890"/>
              <exon start="19235" stop="19368"/>
              <exon start="19634" stop="19715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18586" stop="18890"/>
              <exon start="19235" stop="19368"/>
              <exon start="19634" stop="19707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18586" stop="18890"/>
              <exon start="19235" stop="19368"/>
              <exon start="19634" stop="19705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18586" stop="18800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18594" stop="18890"/>
              <exon start="19235" stop="19368"/>
              <exon start="19634" stop="19736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18600" stop="18879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18611" stop="18890"/>
              <exon start="19235" stop="19368"/>
              <exon start="19634" stop="19736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18611" stop="18890"/>
              <exon start="19235" stop="19368"/>
              <exon start="19634" stop="19736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18614" stop="18890"/>
              <exon start="19235" stop="19368"/>
              <exon start="19634" stop="19681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18637" stop="18890"/>
              <exon start="19235" stop="19368"/>
              <exon start="19634" stop="19731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E562192" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGAGTGTATACTACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG : GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG : CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTT</gDNA_template>
            <first_frame> W  S  V  Y  Y  K  P  A  *  T  T  E  V  L  T  L  I  A  D  S  *  T  L  V  L  F  F  V  Y  R  R  W  R  R  R  K  R  G  R  *  M  Y  R  E  S  Q  S  I  H  W  T  P  I  G  M  S  A  Q  P  K  M  A  V  A  P  L  L  C  G  G  S  R  C  T  I  P  G  R  S  V  I  L  R  V  T  *  L  S  T  T  Y  N  Q  R  S  C  H  Q  Q  G  Y  N  Q  I  V  V  G  S  :  V  I  L  G  W  S  T  R  R  N  W  S  F  L  E  K  S  S  K  L  G  F  P  V  T  T  M  L  Y  *  K  K  G  S  C  P  C  P  F  *  M  I  I  R  S :   K  *  K  F  I  C  L  T  M  S  H  L  L  M  L  L  D  Q  K  Q  R  G  N  A  P  N  L  W  H  *  I  M  K  L </first_frame>
            <second_frame>  G  V  Y  T  T  N  R  P  R  R  L  R  Y  *  R  *  S  P  I  P  K  P  *  F  C  S  S  Y  I  G  D  G  E  E  E  R  E  V  G  E  C  I  G  K  A  K  A  F  I  G  L  Q  *  G  C  Q  R  S  Q  K  W  P  *  R  R  Y  C  A  A  A  Q  D  V  Q  Y  Q  A  E  A  *  S  S  G  S  H  N  *  A  R  L  T  I  K  G  A  A  I  N  K  D  T  T  R  S  S  L  V  R :   *  Y  S  G  G  Q  P  E  G  T  G  V  F  *  R  R  A  P  N  S  A  F  Q  *  L  Q  C  Y  I  K  R  K  E  V  A  H  V  P  F  K  *  S  S  E   : A  S  K  S  S  S  A  *  Q  *  A  I  C  *  C  F  W  T  K  N  K  E  E  T  P  Q  T  Y  G  I  R  L  *  S   </second_frame>
            <third_frame>   E  C  I  L  Q  T  G  L  D  D  *  G  I  N  V  N  R  R  F  L  N  P  S  F  V  L  R  I  S  E  M  A  K  K  K  E  R  S  V  N  V  S  G  K  P  K  H  S  L  D  S  N  R  D  V  S  A  A  K  N  G  R  S  A  A  T  V  R  R  L  K  M  Y  N  T  R  P  K  R  N  P  Q  G  H  I  I  K  H  D  L  Q  S  K  E  L  P  S  T  R  I  Q  P  D  R  R  W  F   : G  N  T  R  V  V  N  Q  K  E  L  E  F  F  R  E  E  L  Q  T  R  L  S  S  N  Y  N  V  I  L  K  E  R  K  L  P  M  S  L  L  N  D  H  Q  K  :  Q  V  K  V  H  L  L  D  N  E  P  F  A  D  A  F  G  P  K  T  K  R  K  R  P  K  L  M  A  L  D  Y  E  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0129L05.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18602" stop="18890"/>
                    <exon start="19235" stop="19368"/>
                    <exon start="19634" stop="19735"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GINVNRRFLNPSFVLRISEMAKKKERSVNVSGKPKHSLDSNRDVSAAKNGRSAATVRRLKMYNTRPKRNPQGHIIKHDLQSKELPSTRIQPDRRWFGNTRVVNQKELEFFREELQTRLSSNYNVILKERKLPMSLLNDHQKQVKVHLLDNEPFADAFGPKTKRKRPKLMALDYEA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 99 chains have been computed
$ 
$ memory statistics:
$ 117056 bytes spliced alignments in total
$ 58 spliced alignments have been stored
$ 2018 bytes was the average size of a spliced alignment
$ 10112 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2528 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 103 backtrace matrices have been allocated
$ 
$ date finished: 2008-11-22 16:51:57
-->
