<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-04-18 00:09:16"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0174J08-R85pX/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-ub6JIr/lycopersicum_combined_unigene_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ub6JIr/lycopersicum_combined_unigene_seqs" ref_id="SGN-U329950" ref_strand="+" ref_description="SGN-U329950        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: hypothetical(evalue: 3e-05, score=23.9)">
      <seq>gctaaacatcagctcaaaatcttttgaggtgcaaccttatagattttcaaacaattgagattggtacagattgtgctattgctagctgatgagtcgatgatctcatgtttaaattctcattaaaccatggatgcatgctgtaaattgttcccttctttttctcttgtttcagttttgcattttcaattttaccgtcacgtgtagcacatctgagaggagcgggtggtgccagcagatggcagttgaatcaactcgtaagttgaatttccttctgttgctgctctcgctctttcatttgcacgtgtatgggtatgtatattttcttctgctttactgtcagcagcttgaaattttcttctgtggagaaatgagtatctgcagtattggcactagtagtgttatcatgcagacattaatatgtaaattgaagggtatactattgatacttagcatccataactaggaaacgaaaactctgatgttgtagttgtatctgctgtaagaatctaatacaacacactatcaattcattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcgaggggggcccgtacccaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0174J08-R85pX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0174J08.1" temp_strand="-" temp_description="C07HBa0174J08.1  AC212636.1 htgs_phase:3 submitted_to_sgn_as:gi|158262131|gb|AC212636.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0174J08, complete sequence">
        <position start="3300" stop="2166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3000" g_stop="2464" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="537" r_length="537" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="544" polyA_stop="571"/>
      <MATCH_line gen_id="C07HBa0174J08.1" gen_strand="-" ref_id="SGN-U329950" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0174J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U329950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3000" e_stop="2464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAAACATCAGCTCAAAATCTTTTGAGGTGCAACCTTATAGATTTTCAAACAATTGAGATTGGTACAGATTGTGCTATTGCTAGCTGATGAGTCGATGATCTCATGTTTAAATTCTCATTAAACCATGGATGCATGCTGTAAATTGTTCCCTTCTTTTTCTCTTGTTTCAGTTTTGCATTTTCAATTTTACCGTCACGTGTAGCACATCTGAGAGGAGCGGGTGGTGCCAGCAGATGGCAGTTGAATCAACTCGTAAGTTGAATTTCCTTCTGTTGCTGCTCTCGCTCTTTCATTTGCACGTGTATGGGTATGTATATTTTCTTCTGCTTTACTGTCAGCAGCTTGAAATTTTCTTCTGTGGAGAAATGAGTATCTGCAGTATTGGCACTAGTAGTGTTATCATGCAGACATTAATATGTAAATTGAAGGGTATACTATTGATACTTAGCATCCATAACTAGGAAACGAAAACTCTGATGTTGTAGTTGTATCTGCTGTAAGAATCTAATACAACACACTATCAATTCATTGAATT</genome_strand>
        <mrna_strand>GCTAAACATCAGCTCAAAATCTTTTGAGGTGCAACCTTATAGATTTTCAAACAATTGAGATTGGTACAGATTGTGCTATTGCTAGCTGATGAGTCGATGATCTCATGTTTAAATTCTCATTAAACCATGGATGCATGCTGTAAATTGTTCCCTTCTTTTTCTCTTGTTTCAGTTTTGCATTTTCAATTTTACCGTCACGTGTAGCACATCTGAGAGGAGCGGGTGGTGCCAGCAGATGGCAGTTGAATCAACTCGTAAGTTGAATTTCCTTCTGTTGCTGCTCTCGCTCTTTCATTTGCACGTGTATGGGTATGTATATTTTCTTCTGCTTTACTGTCAGCAGCTTGAAATTTTCTTCTGTGGAGAAATGAGTATCTGCAGTATTGGCACTAGTAGTGTTATCATGCAGACATTAATATGTAAATTGAAGGGTATACTATTGATACTTAGCATCCATAACTAGGAAACGAAAACTCTGATGTTGTAGTTGTATCTGCTGTAAGAATCTAATACAACACACTATCAATTCATTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ub6JIr/lycopersicum_combined_unigene_seqs" ref_id="SGN-U319790" ref_strand="+" ref_description="SGN-U319790        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:5648763-5651160 FORWARD | Aliases: F3O9.32(evalue: 4e-43, score=171) genbank/nr: gi|54310820|gb|AAV33647.1| putative protein [Avicennia marina] (evalue: 1e-43, score=179)">
      <seq>tacacagtgcatcattctttcagtggttctgtagacggaagaggaagtaatggtgacgcttcaaagcacgctttgcaaaggttttccagcccttacataacaccactgcttactccaagtgacacaccaaaaatagcttctgctagtgtatcccccagacgatgttctgctgcagtatctcctcggaggatatctggcagtacctctccaacaattcctcaatttcaacgccggacatctggcagtacctctccaacaattcctcaatttcaacgtcgagtttcaatgtcatcattctattcttcgagtcaacagtcgagtcaacagtcctcagcagctaactctcctccaagggcacggccaaaaccagctcaaactcctcgagctgatgggaaggagttcttccgtcaagccaggagtcgtctgtcttatgagcagttcagtgcgtttctagcaaacataaaggaactaaatgctcaaaagcaatctcgtgaggaaactttgaaaaaagcagaagagatttttggaacggataacaaggatctctatctatcattccaagggatgcttaaccgtggtgttcgttgacagtacaaaaagtcatcttgggtgtatattcccatcttatggtagcttaaacatttaacataagtcttgcttagtgatctaaagttgaccaaaggacttgtggaactcttgatctatgttccaatttgaggtgcagtatcgctaaacatcagctcaaaatcttttgaggtgcaccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0174J08-R85pX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0174J08.1" temp_strand="-" temp_description="C07HBa0174J08.1  AC212636.1 htgs_phase:3 submitted_to_sgn_as:gi|158262131|gb|AC212636.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0174J08, complete sequence">
        <position start="5914" stop="2664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5614" g_stop="5557" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5556" i_stop="5472" i_length="85">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5471" g_stop="5160" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="370" r_length="312" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5159" i_stop="4885" i_length="275">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4884" g_stop="4839" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="416" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4838" i_stop="3424" i_length="1415">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.283" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3423" g_stop="3345" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="495" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3344" i_stop="3234" i_length="111">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3233" g_stop="2964" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="765" r_length="270" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0174J08.1" gen_strand="-" ref_id="SGN-U319790" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0174J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U319790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5614" e_stop="5557"/>
          <exon e_start="5471" e_stop="5160"/>
          <exon e_start="4884" e_stop="4839"/>
          <exon e_start="3423" e_stop="3345"/>
          <exon e_start="3233" e_stop="2964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACAGTGCATCATTCTTTCAGTGGTTCTGTAGACGGAAGAGGAAGTAATGGTGACGGTATTTGACTTTACATGTTCTTACATGATAATATTAGAATGTTGTGAAAGCTGTGTAATTATTATATCTTTTTTCTTGGATCCAGCTTCAAAGCACGCTTTGCAAAGGTTTTCCAGCCCTTACATAACACCACTGCTTACTCCAAGTGACACACCAAAAATAGCTTCTGCTAGTGTATCCCCCAGACGATGTTCTGCTGCAGTATCTCCTCGGAGGATATCTGGCAGTACCTCTCCAACAATTCCTCAATTTCAACGCCGGACATCTGGCAGTACCTCTCCAACAATTCCTCAATTTCAACGTCGAGTTTCAATGTCATCATTCTATTCTTCGAGTCAACAGTCGAGTCAACAGTCCTCAGCAGCTAACTCTCCTCCAAGGGCACGGCCAAAACCAGGTTTCCAAGAGTTGTCTTTTTTCTTTCCAATTTCCCTGTATAAGCTTATACAAATGTTACTGCTGTAGATGTCGTTACACACATTGAGAGTCATTCTTTATATGAGATGCAAACTTGTGTTGACTCCAATATTTACATTATATACACAATTTTGCTTTAGTGTAAGAATGATTCTATACGTGTGTAACAAACACTCAACAACTTTTGCTAGCTGATATTGTTTCCTTTTGGACAAATTGTTTATTACTAATTAGTTCATGTATGTGAATTTTAAGCTCAAACTCCTCGAGCTGATGGGAAGGAGTTCTTCCGTCAAGCCAGGTACTGAGAGATCCCCTCATAATTTCCCCAAAGCGTAACCATGTGTGAATAAATTTTGAGCTAGTAGGGTTGCAGCCACGAGTAAGTCTTCCCTTGTTATTGTGTAGCCAGAATGCCGCAAAACTTCCATGCCTAAGCGAACTGTTGAGAGTACGTTTCGATTTCTGACTGTGTTAGCCTGGAAGTGCTTGTCCCAACCTTGTTTCTGAGCATGAACGCCCGCAAGCCAACATGTTAGTTGAAGCATCAGGGCGATTAGCAGCATGATATCAAAACGCTCTGAGCTGCTCGTTCGGCTATGGCGTAGGCCTAGTCCGTAGGCAGGACTTTTCAAGTCTCGGAAGGTTTCTTCAATCTGCATTCGCTTCGAATAGATATTAACAAGTTGTTTGGGTGTTCGAATTTCAACAGGTAAGTTAGTTGCTAGAACCCATGGCTCCTTTGCCGACGCTGAGTAGATTTTAGGTGACGGGTGGTGACAATGAGTCCGTGTCGAGCGCTGATTTTTTCGGCCTTTAGAGCGAGATTTATACAATAGAATTTGGCATGAGATTGGATTGCTTTTAGTCAGCCTCTTATAGCCTAAAGTCTTTGAGTGACTAGATGACATATCATGTAAGTTGCTGATAGGTTTCCAGTTTTCCGCTCCTAGGTCTGCATATTGTACTTTTCCTCTTACTCGACTTAACCAGTACCAACCCAGCTTCTCAACGGATTTATACCATGGCACTTTAAAGCCAGCATCACTGACAATGAGCGGTGTGGTGTTACTCGGTAGAATGCTCGCAAGGTCGGCTAGAAATTGGTCATGAGCTTTCTTTGAACATTGCTCTGAAAGCGGGAACGCTTTCTCATAAAGAGTAACAGAACGACCGTGTAGTGCGACTGAAGCTCGCAATACCATAAGTCGTTTTTGCTCACGAATATCAGACCAGTCAACAAGTACAATGGGCATCGTATTGCCCGAACAGATAAAGCTAGCATGCCAACGGTATACAGCGAGTCGCTCTTTGTGGAGGTGACGATTACCTAACAATCGGTCGATTCGTTTGATGTTATGTTTTGTTCTCGCTTTGGTTGGCAGGTTACGGCCAAGTTCGGTAAGAGTGAGAGTTTTACAGTCAAGTAATGCGTGGCAAGCCAACGTTAAGCTGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGATTTTTACCAAAATCATTAGGGGATTCATCAGAGCCAGGTATCTAAATCTTTGACTTTTGTTCTTTTTAATTTTTTTGAGTAAACGATCCTGATGACCAGCATGTGTTGACTCAGGAGTCGTCTGTCTTATGAGCAGTTCAGTGCGTTTCTAGCAAACATAAAGGAACTAAATGCTCAAAAGCAATCTCGTGAGGTGATGAATATAATCTTAGTTATTAGACTGTCCTATGATTACCTTGTATTTGCTTAATTCAATATCTAAATGCTTTTCTGTTTTTTCTTTTTGCACATCGTATTATTTTAGGAAACTTTGAAAAAAGCAGAAGAGATTTTTGGAACGGATAACAAGGATCTCTATCTATCATTCCAAGGGATGCTTAACCGTGGTGTTCGTTGACAGTACAAAAAGTCATCTTGGGTGTATATTCCCATCTTATGGTAGCTTAAACATTTAACATAAGTCTTGCTTAGTGATCTAAAGTTGACCAAAGGACTTGTGGAACTCTTGATCTATGTTCCAATTTGAGGTGCAGTATCGCTAAACATCAGCTCAAAATCTTTTGAGGTGCAACCT</genome_strand>
        <mrna_strand>TACACAGTGCATCATTCTTTCAGTGGTTCTGTAGACGGAAGAGGAAGTAATGGTGACG.....................................................................................CTTCAAAGCACGCTTTGCAAAGGTTTTCCAGCCCTTACATAACACCACTGCTTACTCCAAGTGACACACCAAAAATAGCTTCTGCTAGTGTATCCCCCAGACGATGTTCTGCTGCAGTATCTCCTCGGAGGATATCTGGCAGTACCTCTCCAACAATTCCTCAATTTCAACGCCGGACATCTGGCAGTACCTCTCCAACAATTCCTCAATTTCAACGTCGAGTTTCAATGTCATCATTCTATTCTTCGAGTCAACAGTCGAGTCAACAGTCCTCAGCAGCTAACTCTCCTCCAAGGGCACGGCCAAAACCAG...................................................................................................................................................................................................................................................................................CTCAAACTCCTCGAGCTGATGGGAAGGAGTTCTTCCGTCAAGCCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCGTCTGTCTTATGAGCAGTTCAGTGCGTTTCTAGCAAACATAAAGGAACTAAATGCTCAAAAGCAATCTCGTGAG...............................................................................................................GAAACTTTGAAAAAAGCAGAAGAGATTTTTGGAACGGATAACAAGGATCTCTATCTATCATTCCAAGGGATGCTTAACCGTGGTGTTCGTTGACAGTACAAAAAGTCATCTTGGGTGTATATTCCCATCTTATGGTAGCTTAAACATTTAACATAAGTCTTGCTTAGTGATCTAAAGTTGACCAAAGGACTTGTGGAACTCTTGATCTATGTTCCAATTTGAGGTGCAGTATCGCTAAACATCAGCTCAAAATCTTTTGAGGTGCACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ub6JIr/lycopersicum_combined_unigene_seqs" ref_id="SGN-U319789" ref_strand="+" ref_description="SGN-U319789        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:5648763-5651160 FORWARD | Aliases: F3O9.32(evalue: 1e-25, score=100) genbank/nr: gi|30684901|ref|NP_564000.2| expressed protein [Arabidopsis thaliana] gi|4966372|gb|AAD34703.1| ESTs gb|N38586 and gb|N38613 come from this gene. [Arabidopsis thaliana] gi|26452357|dbj|BAC43264.1| unknown protein [Arabidopsis thaliana] gi|30725370|gb|AAP37707.1| At1g16520 [Arabidopsis thaliana](evalue: 7e-24, score=100)">
      <seq>cttatacaaatgttactgctgtagatgtcgttacacacattgagagtcattctttatatgagatgcaaacttgtgttgactccaatatttacattatatacacaattttgctttagtgtaagaatgattctatacgtgtgtaacaaacactcaacaacttttgctagctgatattgtttccttttggacaaattgtttattactaattagttcatgtatgtgaattttaagctcaaactcctcgagctgatgggaaggagttcttccgtcaagccaggtatctaaatctttgacttttgttctttttaatttttttgagtaaacgatcctgatgaccagcatgtgttgactcaggagtcgtctgtcttatgagcagttcagtgcgtttctagcaaacataaaggaactaaatgctcaaaagcaatctcgtgaggaaactttgaaaaaagcagaagagatttttggaacggataacaaggatctctatctatcattccaagggatgcttaaccgtggtgttcgttgacagtacaaaaagtcatcttgggtgtatattcccatcttatggtagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0174J08-R85pX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0174J08.1" temp_strand="-" temp_description="C07HBa0174J08.1  AC212636.1 htgs_phase:3 submitted_to_sgn_as:gi|158262131|gb|AC212636.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0174J08, complete sequence">
        <position start="5415" stop="2793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5115" g_stop="4839" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4838" i_stop="3501" i_length="1338">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3500" g_stop="3345" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="433" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3344" i_stop="3234" i_length="111">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3233" g_stop="3093" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="574" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0174J08.1" gen_strand="-" ref_id="SGN-U319789" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0174J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U319789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5115" e_stop="4839"/>
          <exon e_start="3500" e_stop="3345"/>
          <exon e_start="3233" e_stop="3093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATACAAATGTTACTGCTGTAGATGTCGTTACACACATTGAGAGTCATTCTTTATATGAGATGCAAACTTGTGTTGACTCCAATATTTACATTATATACACAATTTTGCTTTAGTGTAAGAATGATTCTATACGTGTGTAACAAACACTCAACAACTTTTGCTAGCTGATATTGTTTCCTTTTGGACAAATTGTTTATTACTAATTAGTTCATGTATGTGAATTTTAAGCTCAAACTCCTCGAGCTGATGGGAAGGAGTTCTTCCGTCAAGCCAGGTACTGAGAGATCCCCTCATAATTTCCCCAAAGCGTAACCATGTGTGAATAAATTTTGAGCTAGTAGGGTTGCAGCCACGAGTAAGTCTTCCCTTGTTATTGTGTAGCCAGAATGCCGCAAAACTTCCATGCCTAAGCGAACTGTTGAGAGTACGTTTCGATTTCTGACTGTGTTAGCCTGGAAGTGCTTGTCCCAACCTTGTTTCTGAGCATGAACGCCCGCAAGCCAACATGTTAGTTGAAGCATCAGGGCGATTAGCAGCATGATATCAAAACGCTCTGAGCTGCTCGTTCGGCTATGGCGTAGGCCTAGTCCGTAGGCAGGACTTTTCAAGTCTCGGAAGGTTTCTTCAATCTGCATTCGCTTCGAATAGATATTAACAAGTTGTTTGGGTGTTCGAATTTCAACAGGTAAGTTAGTTGCTAGAACCCATGGCTCCTTTGCCGACGCTGAGTAGATTTTAGGTGACGGGTGGTGACAATGAGTCCGTGTCGAGCGCTGATTTTTTCGGCCTTTAGAGCGAGATTTATACAATAGAATTTGGCATGAGATTGGATTGCTTTTAGTCAGCCTCTTATAGCCTAAAGTCTTTGAGTGACTAGATGACATATCATGTAAGTTGCTGATAGGTTTCCAGTTTTCCGCTCCTAGGTCTGCATATTGTACTTTTCCTCTTACTCGACTTAACCAGTACCAACCCAGCTTCTCAACGGATTTATACCATGGCACTTTAAAGCCAGCATCACTGACAATGAGCGGTGTGGTGTTACTCGGTAGAATGCTCGCAAGGTCGGCTAGAAATTGGTCATGAGCTTTCTTTGAACATTGCTCTGAAAGCGGGAACGCTTTCTCATAAAGAGTAACAGAACGACCGTGTAGTGCGACTGAAGCTCGCAATACCATAAGTCGTTTTTGCTCACGAATATCAGACCAGTCAACAAGTACAATGGGCATCGTATTGCCCGAACAGATAAAGCTAGCATGCCAACGGTATACAGCGAGTCGCTCTTTGTGGAGGTGACGATTACCTAACAATCGGTCGATTCGTTTGATGTTATGTTTTGTTCTCGCTTTGGTTGGCAGGTTACGGCCAAGTTCGGTAAGAGTGAGAGTTTTACAGTCAAGTAATGCGTGGCAAGCCAACGTTAAGCTGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGATTTTTACCAAAATCATTAGGGGATTCATCAGAGCCAGGTATCTAAATCTTTGACTTTTGTTCTTTTTAATTTTTTTGAGTAAACGATCCTGATGACCAGCATGTGTTGACTCAGGAGTCGTCTGTCTTATGAGCAGTTCAGTGCGTTTCTAGCAAACATAAAGGAACTAAATGCTCAAAAGCAATCTCGTGAGGTGATGAATATAATCTTAGTTATTAGACTGTCCTATGATTACCTTGTATTTGCTTAATTCAATATCTAAATGCTTTTCTGTTTTTTCTTTTTGCACATCGTATTATTTTAGGAAACTTTGAAAAAAGCAGAAGAGATTTTTGGAACGGATAACAAGGATCTCTATCTATCATTCCAAGGGATGCTTAACCGTGGTGTTCGTTGACAGTACAAAAAGTCATCTTGGGTGTATATTCCCATCTTATGGTAGCTT</genome_strand>
        <mrna_strand>CTTATACAAATGTTACTGCTGTAGATGTCGTTACACACATTGAGAGTCATTCTTTATATGAGATGCAAACTTGTGTTGACTCCAATATTTACATTATATACACAATTTTGCTTTAGTGTAAGAATGATTCTATACGTGTGTAACAAACACTCAACAACTTTTGCTAGCTGATATTGTTTCCTTTTGGACAAATTGTTTATTACTAATTAGTTCATGTATGTGAATTTTAAGCTCAAACTCCTCGAGCTGATGGGAAGGAGTTCTTCCGTCAAGCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTAAATCTTTGACTTTTGTTCTTTTTAATTTTTTTGAGTAAACGATCCTGATGACCAGCATGTGTTGACTCAGGAGTCGTCTGTCTTATGAGCAGTTCAGTGCGTTTCTAGCAAACATAAAGGAACTAAATGCTCAAAAGCAATCTCGTGAG...............................................................................................................GAAACTTTGAAAAAAGCAGAAGAGATTTTTGGAACGGATAACAAGGATCTCTATCTATCATTCCAAGGGATGCTTAACCGTGGTGTTCGTTGACAGTACAAAAAGTCATCTTGGGTGTATATTCCCATCTTATGGTAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ub6JIr/lycopersicum_combined_unigene_seqs" ref_id="SGN-U336920" ref_strand="+" ref_description="SGN-U336920        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:5648763-5651160 FORWARD | Aliases: F3O9.32(evalue: 1e-31, score=134) genbank/nr: gi|54310820|gb|AAV33647.1| putative protein [Avicennia marina] (evalue: 1e-32, score=143)">
      <seq>tttctccattttcaaaccccattttctcaggattacggtgacgagatgtcggacaacaccatcattgaaagcatcccttacataacaccactgcttactccaattgacacaccaaaaataacgtttggtactgtatacatcagacaatgtcctgatgcattatctcctcgaaggatatctggcagtacctatccaacaattcctcaatttcaacgccggacatctggcagtacctctccaacaattcctcaatttcaacgtctagtttcaatgtcatcattctattcttcgagtcaacagtcgagtcaacagtcctcagcagctaactctcctccaagggcacggccaaaaccagctcaaactcctctagctgatgggaaggagttcttccgtcaagccacgagtcttctgtcttatgagcacttcaatgcgtttctcgcaaacataaaggaactaaatgctcaaaagccatctcgtgaggaaactttgaaaaaagcacaagatattcttggaacggataacaaggatctatatctatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0174J08-R85pX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0174J08.1" temp_strand="-" temp_description="C07HBa0174J08.1  AC212636.1 htgs_phase:3 submitted_to_sgn_as:gi|158262131|gb|AC212636.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0174J08, complete sequence">
        <position start="7961" stop="2872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7661" g_stop="7588" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.892"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7587" i_stop="5442" i_length="2146">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5441" g_stop="5160" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="355" r_length="282" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5159" i_stop="4885" i_length="275">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4884" g_stop="4839" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="401" r_length="46" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4838" i_stop="3424" i_length="1415">
            <donor d_prob="0.938" d_score="0.96"/>
            <acceptor a_prob="0.283" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3423" g_stop="3345" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="480" r_length="79" r_score="0.937"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3344" i_stop="3234" i_length="111">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3233" g_stop="3172" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="542" r_length="62" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0174J08.1" gen_strand="-" ref_id="SGN-U336920" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0174J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U336920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7661" e_stop="7588"/>
          <exon e_start="5441" e_stop="5160"/>
          <exon e_start="4884" e_stop="4839"/>
          <exon e_start="3423" e_stop="3345"/>
          <exon e_start="3233" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCCATTTCCAAACCCCATTTTCTCAGAAATTAGGGTTTGGAGATGTCGGACAACAGCATCATTGAAAGCAGTCGGAATGCCGGCCCGGATTTTTACCTTCCCGATGAAATACTTTCTGTTATTCCGACGGACCCATATGACCAATTGGACCTTGCCCGGAAGATCACCTCCATGGCAATCGCTTCTCGCGTTACAAGTCTGGAGTCTGACATGGACAGGCTCCGGCAGAATCTTAACGGAAAGGATCGCCTCATCCTCGACCTCGAGGATAAGGTCTCTCAGCTCGAAAACGCCTGTCACCAGGCCGAATTGCGATTGAACATCACCCTCCAAGATAATGTATTTCTGCAAAAATCACTACTTTTTCATTCCCTTAGCTTTTGCTTTTCATTTCCATTTAAAGTTTCTTTTTTTCTTTTTCTTTTTGGGAATTAAAAGATGAAACTGTCGAAGGAGAGAGATAATCTGGCTATTACTGCAAAGAAGCTTGGTCGTGACTTAGCAAAGGTTAATGCTTTTCTTCAATTATTATTGTTTTTTATACTTCTCCTGCTCAATTCTAGGGATACTCTCTCATGAATCATGATTTTCATTCATCTGTTTATGCTTTTAGCCTTTCTAAGGGTCTATTCTTTAGATTAACTTTTGAGGGTTACTTTCAATTGCTGATTTAGATGATCAATTCACCAGCAAGGCTAGTGAAACAGATGTTCTTTTTCTTGTAATATTAAAAGTAACTCTTACTAGGCTAAAGCCTCTGGAAACTAGTTGTAGTATTACTTAAGCTGACCATCATAAAAATCTTGAAGGGAAAAAAGGACCATTTTAAACATCTGTGGATATGTTTGGGATTGCAATGGAACAGAACGTTTGCTACTTGCTTAGTTGATTTGGAAAAATCATGCAGAACTACATGCTTGACTACATGTCTCCCTTCACACATTTGGTCTAACATGTTCTTGGTCTCAATTTATAAACCTGAGATAATTTTTGGGGAGAGGAGGGGAAGGGGAGGCATCCATGCTTCATTTTTTTCTTGGGATGCTAATGAAGAACTTCAGCAGTTAAATTAATTTGCTCTTGTGTTATATGGAATACAAGCAAGTAAACTGCTTGCTAATAAGTTCATTTGAATGTTTAAAGTAGAGCTCATCTCATGATGATTTACTTTTCCTGGATGCCTGATGACAATGTAAAAAATAAGCACACAGTTTGTGAGTTTACTGTTATTGACATTTATAGTACACTTGGAAGGGAAGAATCCTTTCCCTTTATTTCAGCTAAAATTGTTATTATACTTGCTAAATACTGCCAGCGAATGTGAATGTGTTAAAAAATTGAAAAGCAGAGGCTTATGGTTACTGCTTTATATGCTTTCGGTTCTTTCGTAGTGCTTATTTCCTGTATTGGACAGTATTCTTGTCATCCCTCTTAAGAAAGAATATTGAAAGTGGAAATTTCATAGGCTAATCTGCTAATTTCATTTCAACTGCATAAACTTACTTCCTTTTTTGTTTAAACAGTTGGAGACCTTTAAAAGGCAATTGGTGCAGTCTTTGAGTGATGATGACTCATCTGTAAGTTTCATAATATTCATTTTTTGGCATTTTTTTTAGAGTATTATTAGAAGGTCACCAGCACTTGCAAAAAGAAAATTTGGGTATAATCTGTAATATTATAAACAAGAATGAACGTGATTTCCATTGACTTGTAGGACAGTACAAAAAATTGAGGCTCAAGCTCTTCTTTTTAGAAGTTTTGTTTCCCTTCAAGAGATTTCTTCTTTTCTTTTATCGACTGTGATGATCTTTTCTTTTTTGACCATGGCAGCAAGCTGAAACTGTAGATATTGGCATTTATGATCAATCTGTTCATAAGTCATATCCTTTAAAAGGTAATTTCACCATTGACATTTTAAGTCCTTCGAATTTTGTTTACTTTTTATGTTTCAGATATCATGTGACTTTAGCTGTTTCAAGCTATCGAGAGCTGATGTTGTGAGTTTGATTTTGATAATTCTATCTTGCAGAGGAGGTGAATAGCTACACAGTGCATCATTCTTTCAGTGGTTCTGTAGACGGAAGAGGAAGTAATGGTGACGGTATTTGACTTTACATGTTCTTACATGATAATATTAGAATGTTGTGAAAGCTGTGTAATTATTATATCTTTTTTCTTGGATCCAGCTTCAAAGCACGCTTTGCAAAGGTTTTCCAGCCCTTACATAACACCACTGCTTACTCCAAGTGACACACCAAAAATAGCTTCTGCTAGTGTATCCCCCAGACGATGTTCTGCTGCAGTATCTCCTCGGAGGATATCTGGCAGTACCTCTCCAACAATTCCTCAATTTCAACGCCGGACATCTGGCAGTACCTCTCCAACAATTCCTCAATTTCAACGTCGAGTTTCAATGTCATCATTCTATTCTTCGAGTCAACAGTCGAGTCAACAGTCCTCAGCAGCTAACTCTCCTCCAAGGGCACGGCCAAAACCAGGTTTCCAAGAGTTGTCTTTTTTCTTTCCAATTTCCCTGTATAAGCTTATACAAATGTTACTGCTGTAGATGTCGTTACACACATTGAGAGTCATTCTTTATATGAGATGCAAACTTGTGTTGACTCCAATATTTACATTATATACACAATTTTGCTTTAGTGTAAGAATGATTCTATACGTGTGTAACAAACACTCAACAACTTTTGCTAGCTGATATTGTTTCCTTTTGGACAAATTGTTTATTACTAATTAGTTCATGTATGTGAATTTTAAGCTCAAACTCCTCGAGCTGATGGGAAGGAGTTCTTCCGTCAAGCCAGGTACTGAGAGATCCCCTCATAATTTCCCCAAAGCGTAACCATGTGTGAATAAATTTTGAGCTAGTAGGGTTGCAGCCACGAGTAAGTCTTCCCTTGTTATTGTGTAGCCAGAATGCCGCAAAACTTCCATGCCTAAGCGAACTGTTGAGAGTACGTTTCGATTTCTGACTGTGTTAGCCTGGAAGTGCTTGTCCCAACCTTGTTTCTGAGCATGAACGCCCGCAAGCCAACATGTTAGTTGAAGCATCAGGGCGATTAGCAGCATGATATCAAAACGCTCTGAGCTGCTCGTTCGGCTATGGCGTAGGCCTAGTCCGTAGGCAGGACTTTTCAAGTCTCGGAAGGTTTCTTCAATCTGCATTCGCTTCGAATAGATATTAACAAGTTGTTTGGGTGTTCGAATTTCAACAGGTAAGTTAGTTGCTAGAACCCATGGCTCCTTTGCCGACGCTGAGTAGATTTTAGGTGACGGGTGGTGACAATGAGTCCGTGTCGAGCGCTGATTTTTTCGGCCTTTAGAGCGAGATTTATACAATAGAATTTGGCATGAGATTGGATTGCTTTTAGTCAGCCTCTTATAGCCTAAAGTCTTTGAGTGACTAGATGACATATCATGTAAGTTGCTGATAGGTTTCCAGTTTTCCGCTCCTAGGTCTGCATATTGTACTTTTCCTCTTACTCGACTTAACCAGTACCAACCCAGCTTCTCAACGGATTTATACCATGGCACTTTAAAGCCAGCATCACTGACAATGAGCGGTGTGGTGTTACTCGGTAGAATGCTCGCAAGGTCGGCTAGAAATTGGTCATGAGCTTTCTTTGAACATTGCTCTGAAAGCGGGAACGCTTTCTCATAAAGAGTAACAGAACGACCGTGTAGTGCGACTGAAGCTCGCAATACCATAAGTCGTTTTTGCTCACGAATATCAGACCAGTCAACAAGTACAATGGGCATCGTATTGCCCGAACAGATAAAGCTAGCATGCCAACGGTATACAGCGAGTCGCTCTTTGTGGAGGTGACGATTACCTAACAATCGGTCGATTCGTTTGATGTTATGTTTTGTTCTCGCTTTGGTTGGCAGGTTACGGCCAAGTTCGGTAAGAGTGAGAGTTTTACAGTCAAGTAATGCGTGGCAAGCCAACGTTAAGCTGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGATTTTTACCAAAATCATTAGGGGATTCATCAGAGCCAGGTATCTAAATCTTTGACTTTTGTTCTTTTTAATTTTTTTGAGTAAACGATCCTGATGACCAGCATGTGTTGACTCAGGAGTCGTCTGTCTTATGAGCAGTTCAGTGCGTTTCTAGCAAACATAAAGGAACTAAATGCTCAAAAGCAATCTCGTGAGGTGATGAATATAATCTTAGTTATTAGACTGTCCTATGATTACCTTGTATTTGCTTAATTCAATATCTAAATGCTTTTCTGTTTTTTCTTTTTGCACATCGTATTATTTTAGGAAACTTTGAAAAAAGCAGAAGAGATTTTTGGAACGGATAACAAGGATCTCTATCTATCATT</genome_strand>
        <mrna_strand>TTTCTCCATTTTCAAACCCCATTTTCTCAG-GATTACGGTGACGAGATGTCGGACAACACCATCATTGAAAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCTTACATAACACCACTGCTTACTCCAATTGACACACCAAAAATAACGTTTGGTACTGTATACATCAGACAATGTCCTGATGCATTATCTCCTCGAAGGATATCTGGCAGTACCTATCCAACAATTCCTCAATTTCAACGCCGGACATCTGGCAGTACCTCTCCAACAATTCCTCAATTTCAACGTCTAGTTTCAATGTCATCATTCTATTCTTCGAGTCAACAGTCGAGTCAACAGTCCTCAGCAGCTAACTCTCCTCCAAGGGCACGGCCAAAACCAG...................................................................................................................................................................................................................................................................................CTCAAACTCCTCTAGCTGATGGGAAGGAGTTCTTCCGTCAAGCCAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCTTCTGTCTTATGAGCACTTCAATGCGTTTCTCGCAAACATAAAGGAACTAAATGCTCAAAAGCCATCTCGTGAG...............................................................................................................GAAACTTTGAAAAAAGCACAAGATATTCTTGGAACGGATAACAAGGATCTATATCTATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ub6JIr/lycopersicum_combined_unigene_seqs" ref_id="SGN-U336921" ref_strand="+" ref_description="SGN-U336921        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:5648763-5651160 FORWARD | Aliases: F3O9.32(evalue: 5e-52, score=201) genbank/nr: gi|54310820|gb|AAV33647.1| putative protein [Avicennia marina] (evalue: 1e-61, score=239)">
      <seq>tcacacacatttcttcatttccaaaccccattttctcagaaattagggtttggagatgtcggacaacagcatcattgaaagcagtcggaatgccggcccggatttttaccttcccgatgaaatactttctgttattccgacggacccatatgaccaattggaccttgcccggaagatcaccttcatggcaatcgcttctcgcgttacaagtctggagtctgacatggacaggctccggcagaatcttaacggaaaggatcgcctcatcctcgacctcgaggataaggtctctcagctcgaaaacgcctgtcaccgggccgaattgcgattgaacatcaccctccaagataatatgaaactgtcgaaggagagagataatctggctattactgcaaagaagcttggtcgtgacttatcatagttggagacctttaaaaggcaattggtgcagactttgagtgatgatgactcatctcaagctgaaactgtagatattggcatttatgatcaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0174J08-R85pX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0174J08.1" temp_strand="-" temp_description="C07HBa0174J08.1  AC212636.1 htgs_phase:3 submitted_to_sgn_as:gi|158262131|gb|AC212636.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0174J08, complete sequence">
        <position start="7970" stop="5489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7670" g_stop="7319" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7318" i_stop="7220" i_length="99">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7219" g_stop="7151" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="421" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7150" i_stop="6135" i_length="1016">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6134" g_stop="6081" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="475" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6080" i_stop="5828" i_length="253">
            <donor d_prob="0.967" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5827" g_stop="5789" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="514" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0174J08.1" gen_strand="-" ref_id="SGN-U336921" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0174J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U336921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7670" e_stop="7319"/>
          <exon e_start="7219" e_stop="7151"/>
          <exon e_start="6134" e_stop="6081"/>
          <exon e_start="5827" e_stop="5789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACACACATTTCTCCATTTCCAAACCCCATTTTCTCAGAAATTAGGGTTTGGAGATGTCGGACAACAGCATCATTGAAAGCAGTCGGAATGCCGGCCCGGATTTTTACCTTCCCGATGAAATACTTTCTGTTATTCCGACGGACCCATATGACCAATTGGACCTTGCCCGGAAGATCACCTCCATGGCAATCGCTTCTCGCGTTACAAGTCTGGAGTCTGACATGGACAGGCTCCGGCAGAATCTTAACGGAAAGGATCGCCTCATCCTCGACCTCGAGGATAAGGTCTCTCAGCTCGAAAACGCCTGTCACCAGGCCGAATTGCGATTGAACATCACCCTCCAAGATAATGTATTTCTGCAAAAATCACTACTTTTTCATTCCCTTAGCTTTTGCTTTTCATTTCCATTTAAAGTTTCTTTTTTTCTTTTTCTTTTTGGGAATTAAAAGATGAAACTGTCGAAGGAGAGAGATAATCTGGCTATTACTGCAAAGAAGCTTGGTCGTGACTTAGCAAAGGTTAATGCTTTTCTTCAATTATTATTGTTTTTTATACTTCTCCTGCTCAATTCTAGGGATACTCTCTCATGAATCATGATTTTCATTCATCTGTTTATGCTTTTAGCCTTTCTAAGGGTCTATTCTTTAGATTAACTTTTGAGGGTTACTTTCAATTGCTGATTTAGATGATCAATTCACCAGCAAGGCTAGTGAAACAGATGTTCTTTTTCTTGTAATATTAAAAGTAACTCTTACTAGGCTAAAGCCTCTGGAAACTAGTTGTAGTATTACTTAAGCTGACCATCATAAAAATCTTGAAGGGAAAAAAGGACCATTTTAAACATCTGTGGATATGTTTGGGATTGCAATGGAACAGAACGTTTGCTACTTGCTTAGTTGATTTGGAAAAATCATGCAGAACTACATGCTTGACTACATGTCTCCCTTCACACATTTGGTCTAACATGTTCTTGGTCTCAATTTATAAACCTGAGATAATTTTTGGGGAGAGGAGGGGAAGGGGAGGCATCCATGCTTCATTTTTTTCTTGGGATGCTAATGAAGAACTTCAGCAGTTAAATTAATTTGCTCTTGTGTTATATGGAATACAAGCAAGTAAACTGCTTGCTAATAAGTTCATTTGAATGTTTAAAGTAGAGCTCATCTCATGATGATTTACTTTTCCTGGATGCCTGATGACAATGTAAAAAATAAGCACACAGTTTGTGAGTTTACTGTTATTGACATTTATAGTACACTTGGAAGGGAAGAATCCTTTCCCTTTATTTCAGCTAAAATTGTTATTATACTTGCTAAATACTGCCAGCGAATGTGAATGTGTTAAAAAATTGAAAAGCAGAGGCTTATGGTTACTGCTTTATATGCTTTCGGTTCTTTCGTAGTGCTTATTTCCTGTATTGGACAGTATTCTTGTCATCCCTCTTAAGAAAGAATATTGAAAGTGGAAATTTCATAGGCTAATCTGCTAATTTCATTTCAACTGCATAAACTTACTTCCTTTTTTGTTTAAACAGTTGGAGACCTTTAAAAGGCAATTGGTGCAGTCTTTGAGTGATGATGACTCATCTGTAAGTTTCATAATATTCATTTTTTGGCATTTTTTTTAGAGTATTATTAGAAGGTCACCAGCACTTGCAAAAAGAAAATTTGGGTATAATCTGTAATATTATAAACAAGAATGAACGTGATTTCCATTGACTTGTAGGACAGTACAAAAAATTGAGGCTCAAGCTCTTCTTTTTAGAAGTTTTGTTTCCCTTCAAGAGATTTCTTCTTTTCTTTTATCGACTGTGATGATCTTTTCTTTTTTGACCATGGCAGCAAGCTGAAACTGTAGATATTGGCATTTATGATCAATCT</genome_strand>
        <mrna_strand>TCACACACATTTCTTCATTTCCAAACCCCATTTTCTCAGAAATTAGGGTTTGGAGATGTCGGACAACAGCATCATTGAAAGCAGTCGGAATGCCGGCCCGGATTTTTACCTTCCCGATGAAATACTTTCTGTTATTCCGACGGACCCATATGACCAATTGGACCTTGCCCGGAAGATCACCTTCATGGCAATCGCTTCTCGCGTTACAAGTCTGGAGTCTGACATGGACAGGCTCCGGCAGAATCTTAACGGAAAGGATCGCCTCATCCTCGACCTCGAGGATAAGGTCTCTCAGCTCGAAAACGCCTGTCACCGGGCCGAATTGCGATTGAACATCACCCTCCAAGATAAT...................................................................................................ATGAAACTGTCGAAGGAGAGAGATAATCTGGCTATTACTGCAAAGAAGCTTGGTCGTGACTTATCATAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGACCTTTAAAAGGCAATTGGTGCAGACTTTGAGTGATGATGACTCATCT.............................................................................................................................................................................................................................................................CAAGCTGAAACTGTAGATATTGGCATTTATGATCAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ub6JIr/lycopersicum_combined_unigene_seqs" ref_id="SGN-U341536" ref_strand="-" ref_description="SGN-U341536        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | tetratricopeptide repeat (TPR)-containing protein, contains Pfam profile PF00515 TPR Domain; similar to infertility-related sperm protein (Homo sapiens) GI:10863768, TPR-containing protein involved in spermatogenesis TPIS (Mus musculus) GI:6272680 | chr1:20981360-20983014 REVERSE | Aliases: T6H22.6, T6H22_6(evalue: 1e-11, score=67.4) genbank/nr: At1g56090(evalue: 8e-10, score=67.4)">
      <seq>ctgaagacagttatgttccaaaaatgaaatcgtatgagcaaccgtcgtctagctgggaagcaatcccacagccaaaaggacattcccggcttgactattcaagatgggatagggttgaagatgagtttagtgaagatgacgatggcgatgatgatgacaatgattttcaacctcagtatagattccgtgtcaaaactattggtgtacgagctgttaagtaagacgaagaaagtatttaatgcaaattgcatgaattgggccatacaattctttgttgtttccaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0174J08-R85pX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0174J08.1" temp_strand="-" temp_description="C07HBa0174J08.1  AC212636.1 htgs_phase:3 submitted_to_sgn_as:gi|158262131|gb|AC212636.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0174J08, complete sequence">
        <position start="9130" stop="8241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8830" g_stop="8548" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="284" polyA_stop="306"/>
      <MATCH_line gen_id="C07HBa0174J08.1" gen_strand="-" ref_id="SGN-U341536" ref_strand="-">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0174J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U341536" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="8830" e_stop="8548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGTCAGTGATGTTCCAAAAATGGAATCGTCTGAACAACCGTCGTCTAGCTGGGAAGCAATCCCACAGCCAAAAGGACATTCACGGCTTGACTATTCAAGATGGGATAGGGTTGAAGATGAGTCTAGTGAAGATGACGATGACGATGATGATGACAATGATTCTCAACCTCAGTATAGATTCCGTGTCAAAACTATTGGTGTACGAGCTGTTAAGTAAGACGAAGAAAGTATTTAATGCAAATTGCATGAATTGGGCCATACAATTCTTTGTTGTTTCCT</genome_strand>
        <mrna_strand>CTGAAGACAGTTATGTTCCAAAAATGAAATCGTATGAGCAACCGTCGTCTAGCTGGGAAGCAATCCCACAGCCAAAAGGACATTCCCGGCTTGACTATTCAAGATGGGATAGGGTTGAAGATGAGTTTAGTGAAGATGACGATGGCGATGATGATGACAATGATTTTCAACCTCAGTATAGATTCCGTGTCAAAACTATTGGTGTACGAGCTGTTAAGTAAGACGAAGAAAGTATTTAATGCAAATTGCATGAATTGGGCCATACAATTCTTTGTTGTTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ub6JIr/lycopersicum_combined_unigene_seqs" ref_id="SGN-U322851" ref_strand="+" ref_description="SGN-U322851        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | tetratricopeptide repeat (TPR)-containing protein, contains Pfam profile PF00515 TPR Domain; similar to infertility-related sperm protein (Homo sapiens) GI:10863768, TPR-containing protein involved in spermatogenesis TPIS (Mus musculus) GI:6272680 | chr1:20981360-20983014 REVERSE | Aliases: T6H22.6, T6H22_6(evalue: 3e-23, score=105) genbank/nr: OSJNBa0008M17.15(evalue: 7e-23, score=110)">
      <seq>gctcttcacagtaatcgtgctgcttgtttcctcaaacttcacgatttcaaaaaggttacatctttatttattgaattacatcaaacatttgttcaattcgacctctcaaactttgaacttgatgctttgacctttctgatttcgaatggctagttgatatatagtgctgtgacaccatcacagtggtaacaaatggttgctcttttggaaattcaatcttttactcaattcagcatgggttataaagttttctcttttcagcaataacatggttcaaatgaagcaaaaagggttatcctttttcctttttaaacttaatgtttaccctacttgcttggactttaagttccaaatcaataaatcaactttctttttcttggattggatacccccatagatagcaaatcattgaatcatcttttttggttttctaggttcttggttttccttgttggttggctctttatatctcaaaatacaaggacttggatgagtagcttaagatcttaactgatttgctcatcatgaagtgaatattgtattggactctagcagaggcgtagccaggattttagtgaagggtgttcgaacttcgaagaggcagcagatgaatgcacattggtgcttgaacttgatcaaaaacacacaggcgcgctgatgttgcgcgctcaaaccttagtcaccctcaaggagtaccattcagcactttttgatgtcaacaggttaattgaaattgatccatcatcagaagtgtatcaaaacctccatgcccgtctgaagacacnattggtagtcattctgccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0174J08-R85pX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0174J08.1" temp_strand="-" temp_description="C07HBa0174J08.1  AC212636.1 htgs_phase:3 submitted_to_sgn_as:gi|158262131|gb|AC212636.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0174J08, complete sequence">
        <position start="12390" stop="9137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12090" g_stop="11491" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11490" i_stop="9643" i_length="1848">
            <donor d_prob="0.770" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9642" g_stop="9437" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="806" r_length="206" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0174J08.1" gen_strand="-" ref_id="SGN-U322851" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0174J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U322851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12090" e_stop="11491"/>
          <exon e_start="9642" e_stop="9437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTTCACAGTAATCGTGCTGCTTGTTTCCTCAAACTTCACGATTTCAAAAAGGTTACATCTTTATTTATTGAATTACATCAAACATTTGTTCAATTCGACCTCTCAAACTTTGAACTTGATGCTTTGACCTTTCTGATTTCGAATGGCTAGTTGATATATAGTGCTGTGACACCATCACAGTGGTAACAAATGGTTGCTCTTTTGGAAATTCAATCTTTTACTCAATTCAGCATGGGTTATAAAGTTTTCTCTTTTCAGCAATAACATGGTTCAAATGAAGCAAAAAGGGTTATCCTTTTTCCTTTTTAAACTTAATGTTTACCCTACTTGCTTGGACTTTAAGTTCCAAATCAATAAATCAACTTTCTTTTTCTTGGATTGGATACCCCCATAGATAGCAAATCATTGAATCATCTTTTTTGGTTTTCTAGGTTCTTGGTTTTCCTTGTTGGTTGGCTCTTTATATCTCAAAATACAAGGACTTGGATGAGTAGCTTAAGATCTTAACTGATTTGCTCATCATGAAGTGAATATTGTATTGGACTCTAGCAGAGGCGTAGCCAGGATTTTAGTGAAGGGTGTTCGAACTTCGAAGAGGTAAATACAAAAAAATAAAAGAAGAAAAATCATGAAAGGGCGCAATTTTTTTTAGTGAAGCTACATAATATTTAGCTAAGTCATAAAAGCACTTGTTATGATACTAACAATTGTATAAATTAAATTAACTTAAAAAGAGATGAAGTAAATTCTTCTAGTGAAAGCATAATCCAAATAATTATTCAATCCTACTTGAAAAGATTTCATATCTTGAATTTTTTTAATCGATAAACTTATTAGAAATAATACTAAATCTCTCTTCATTACATTAGGCACTACGAAATCGCCTAAAACATTATCAAATTGTATTTTAAGTGTTGAGTCCCATATCGGTGAGATGAGAAGAATTTGGACTCTTCAAGGTTTTGGGCAATACTTTCATCATGAGCTAGCATTTAGGGTTGAGTTGGGCCTAAGGTCTATTTAACGTGATAGCAGAGCTAGGCCCATTCCAATTTGTGGTTTACCGATGTTGGGTCCCCTTATAACTTGTCCATGCTCCAGGTGTCCAAATCTAAGTGTGAGGTGGGTGTTGAATCCTACATCAGTGGGATGAGGAGAATTTAGACTCTTTATATGGTCTTGAAAAGTTTTCCTTTCATGAGCTAGCTTTTGAAGTTGAGTTAGATCTCGAATAATGAAATAAGAGAGTATGTCTTGTGCTTAGTTTTGTGATGCCTATAAATAATACTCCACCCGTTTCAAATTATATGATATTTTTTGCTTTCCGAGTGTCAAGTTGACTAATCTTTGAAGCTAAGTTGGATTAAATCAACACTATGTTTGAACTCTATGAAAATTACTATAAGTTATGATATTTCTCATGTCAATATGATAAAAATAATACATTTTAAAATATTGGTGAAAATTTACATAGTTTGAATCTTGAATAATGAAAAATACTTCCCCTTTTTTTGATAGCAATAAAATATTTCTCATTGTCTTCTTGTAATAATAACACAAGAACCCGTTAAGAAGAATATTTAATATGAGAGTATATTTTCTCAGCACAAGCAGCAAGAGTTAGTGAACGACTCATCTTATTTGTTCTATTTTACTTTAAAAAAATGTACGCAGATAATAGCTGTAGGAATCGAACCCGTGCCTCTTTAGAAAGTCAGACCAGCCTTGGCCGCTGAGCTATCACTCTCAGTTGTGTCAAGAGTGAATGATTGTATGTTAAAAATGATATTTCAGCTCTACAAACAGTGTTCAGCTGACACCCTTCCAAGGCTGTAGCTCCACCAGTGGATGTTAGTAATTTGTTTTCAATGACCGGGCTGTGTACATAATTGATAACTAGGTAATTGTGAAGTTTTATGTATCCAAGATTTGCTTGATACCCGAATACAGCCAAATTTTTTTGAATACCTTGTTCGTTAATTACTAAAACTAGCATATTGTGTTTCCCATTAAAAAATAGAAATATCTAAGTTAGCTCGAACAATTTCTTTGTATTTTAGGTTTCCCTTATCGATAATGTAGTAAGCATATGAGTGAGCAGAAGAAGTAATCACTCAGTCTCATTTTTTATAAACCGTTAAACTTGAAGCAGTTGTTGATGATGATCCTAATAATGGACAGTACTCATTCTCAAAAAAATGATCCTAATAATGGACAGTACTCCAACAGCGTTGAACGTGTCTCTTGTCAGATATTTATGGCCTTCTTTCTGAGCATATTTTATCAAAAAAAAATGATGCCTGGTTGTTATAGTTTGTGTTACTGCAGTATACTGTGTGTTCCTCTTGTTATTGTTTGAAGAAAGATAAATTAGAGAAAGGAGGGAGGATTTATCTGTCCAGTGCTTTCTTTGAGCTTACTGTTGGTTATTATCTCATGTTGCAGGCAGCAGATGAATGCACATTGGTGCTTGAACTTGATCAAAAACACACAGGCGCGCTGATGTTGCGCGCTCAAACCTTAGTCACCCTCAAGGAGTACCATTCAGCACTTTTTGATGTCAACAGGTTAATTGAATTGAATCCATCATCAGAAGTGTATCAAAACCTCCATGCCCGTCTGAAGACACAATTGGTAGTCATTCTGCCTTT</genome_strand>
        <mrna_strand>GCTCTTCACAGTAATCGTGCTGCTTGTTTCCTCAAACTTCACGATTTCAAAAAGGTTACATCTTTATTTATTGAATTACATCAAACATTTGTTCAATTCGACCTCTCAAACTTTGAACTTGATGCTTTGACCTTTCTGATTTCGAATGGCTAGTTGATATATAGTGCTGTGACACCATCACAGTGGTAACAAATGGTTGCTCTTTTGGAAATTCAATCTTTTACTCAATTCAGCATGGGTTATAAAGTTTTCTCTTTTCAGCAATAACATGGTTCAAATGAAGCAAAAAGGGTTATCCTTTTTCCTTTTTAAACTTAATGTTTACCCTACTTGCTTGGACTTTAAGTTCCAAATCAATAAATCAACTTTCTTTTTCTTGGATTGGATACCCCCATAGATAGCAAATCATTGAATCATCTTTTTTGGTTTTCTAGGTTCTTGGTTTTCCTTGTTGGTTGGCTCTTTATATCTCAAAATACAAGGACTTGGATGAGTAGCTTAAGATCTTAACTGATTTGCTCATCATGAAGTGAATATTGTATTGGACTCTAGCAGAGGCGTAGCCAGGATTTTAGTGAAGGGTGTTCGAACTTCGAAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGATGAATGCACATTGGTGCTTGAACTTGATCAAAAACACACAGGCGCGCTGATGTTGCGCGCTCAAACCTTAGTCACCCTCAAGGAGTACCATTCAGCACTTTTTGATGTCAACAGGTTAATTGAAATTGATCCATCATCAGAAGTGTATCAAAACCTCCATGCCCGTCTGAAGACACNATTGGTAGTCATTCTGCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ub6JIr/lycopersicum_combined_unigene_seqs" ref_id="SGN-U337710" ref_strand="+" ref_description="SGN-U337710        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | tetratricopeptide repeat (TPR)-containing protein, contains Pfam profile PF00515 TPR Domain; similar to infertility-related sperm protein (Homo sapiens) GI:10863768, TPR-containing protein involved in spermatogenesis TPIS (Mus musculus) GI:6272680 | chr1:20981360-20983014 REVERSE | Aliases: T6H22.6, T6H22_6(evalue: 4e-27, score=118) genbank/nr: OSJNBa0008M17.15(evalue: 8e-26, score=120)">
      <seq>tcaattcccccaatttttcagattcaagttactgttattcgggtaaatttcttcgaattagggtgcatacaaacatggcctcatcagctgccatcaacaacatcgaaagagctcaccagatgtacagggaaggtagatatgcccaagctctgggtttttataccgatgctctttctttggctaaaacaaactcccaaaagatcgctcttcacagtaatcgtgctgcttgtttcctcaaacttcacgatttcaaaaaggttcttggttttccttgttggttggctctttatatctcaaaatacaaggacttggatgagtagcttaagatcttaactgatttgctcatcatgaagtgaatattgtattggactctagcagaggcgtagccaggattttagtgaagggtgttcgaacttcgaagaggcagcagatgaatgcacattggtgcttgaacttgatcaaaaacacacaggcgcgctgatgttgcgcgctcaaaccttagtcaccctcaaggagtaccattcagcactttttgatgtcaacaggttaattgaattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0174J08-R85pX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0174J08.1" temp_strand="-" temp_description="C07HBa0174J08.1  AC212636.1 htgs_phase:3 submitted_to_sgn_as:gi|158262131|gb|AC212636.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0174J08, complete sequence">
        <position start="12593" stop="9207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12293" g_stop="12037" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12036" i_stop="11657" i_length="380">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.057" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11656" g_stop="11491" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="423" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11490" i_stop="9643" i_length="1848">
            <donor d_prob="0.770" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9642" g_stop="9507" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="559" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0174J08.1" gen_strand="-" ref_id="SGN-U337710" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0174J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U337710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12293" e_stop="12037"/>
          <exon e_start="11656" e_stop="11491"/>
          <exon e_start="9642" e_stop="9507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTCCCCCAATTTTTCAGATTCAAGTTACTGTTATTCGATTAAATTTCTTCGAATTAGGGTACATACAAACATGGCCTCATCAGCTGCCATCAACAACATCGAAAGAGCTCACCAGATGTACAGGGAAGGTAGATATGCCCAAGCTCTGGGTTTTTATACCGATGCTCTTTCTTTGGCTAAAACAAACTCCCAAAAGATCGCTCTTCACAGTAATCGTGCTGCTTGTTTCCTCAAACTTCACGATTTCAAAAAGGTTACATCTTTATTTATTGAATTACATCAAACATTTGTTCAATTCGACCTCTCAAACTTTGAACTTGATGCTTTGACCTTTCTGATTTCGAATGGCTAGTTGATATATAGTGCTGTGACACCATCACAGTGGTAACAAATGGTTGCTCTTTTGGAAATTCAATCTTTTACTCAATTCAGCATGGGTTATAAAGTTTTCTCTTTTCAGCAATAACATGGTTCAAATGAAGCAAAAAGGGTTATCCTTTTTCCTTTTTAAACTTAATGTTTACCCTACTTGCTTGGACTTTAAGTTCCAAATCAATAAATCAACTTTCTTTTTCTTGGATTGGATACCCCCATAGATAGCAAATCATTGAATCATCTTTTTTGGTTTTCTAGGTTCTTGGTTTTCCTTGTTGGTTGGCTCTTTATATCTCAAAATACAAGGACTTGGATGAGTAGCTTAAGATCTTAACTGATTTGCTCATCATGAAGTGAATATTGTATTGGACTCTAGCAGAGGCGTAGCCAGGATTTTAGTGAAGGGTGTTCGAACTTCGAAGAGGTAAATACAAAAAAATAAAAGAAGAAAAATCATGAAAGGGCGCAATTTTTTTTAGTGAAGCTACATAATATTTAGCTAAGTCATAAAAGCACTTGTTATGATACTAACAATTGTATAAATTAAATTAACTTAAAAAGAGATGAAGTAAATTCTTCTAGTGAAAGCATAATCCAAATAATTATTCAATCCTACTTGAAAAGATTTCATATCTTGAATTTTTTTAATCGATAAACTTATTAGAAATAATACTAAATCTCTCTTCATTACATTAGGCACTACGAAATCGCCTAAAACATTATCAAATTGTATTTTAAGTGTTGAGTCCCATATCGGTGAGATGAGAAGAATTTGGACTCTTCAAGGTTTTGGGCAATACTTTCATCATGAGCTAGCATTTAGGGTTGAGTTGGGCCTAAGGTCTATTTAACGTGATAGCAGAGCTAGGCCCATTCCAATTTGTGGTTTACCGATGTTGGGTCCCCTTATAACTTGTCCATGCTCCAGGTGTCCAAATCTAAGTGTGAGGTGGGTGTTGAATCCTACATCAGTGGGATGAGGAGAATTTAGACTCTTTATATGGTCTTGAAAAGTTTTCCTTTCATGAGCTAGCTTTTGAAGTTGAGTTAGATCTCGAATAATGAAATAAGAGAGTATGTCTTGTGCTTAGTTTTGTGATGCCTATAAATAATACTCCACCCGTTTCAAATTATATGATATTTTTTGCTTTCCGAGTGTCAAGTTGACTAATCTTTGAAGCTAAGTTGGATTAAATCAACACTATGTTTGAACTCTATGAAAATTACTATAAGTTATGATATTTCTCATGTCAATATGATAAAAATAATACATTTTAAAATATTGGTGAAAATTTACATAGTTTGAATCTTGAATAATGAAAAATACTTCCCCTTTTTTTGATAGCAATAAAATATTTCTCATTGTCTTCTTGTAATAATAACACAAGAACCCGTTAAGAAGAATATTTAATATGAGAGTATATTTTCTCAGCACAAGCAGCAAGAGTTAGTGAACGACTCATCTTATTTGTTCTATTTTACTTTAAAAAAATGTACGCAGATAATAGCTGTAGGAATCGAACCCGTGCCTCTTTAGAAAGTCAGACCAGCCTTGGCCGCTGAGCTATCACTCTCAGTTGTGTCAAGAGTGAATGATTGTATGTTAAAAATGATATTTCAGCTCTACAAACAGTGTTCAGCTGACACCCTTCCAAGGCTGTAGCTCCACCAGTGGATGTTAGTAATTTGTTTTCAATGACCGGGCTGTGTACATAATTGATAACTAGGTAATTGTGAAGTTTTATGTATCCAAGATTTGCTTGATACCCGAATACAGCCAAATTTTTTTGAATACCTTGTTCGTTAATTACTAAAACTAGCATATTGTGTTTCCCATTAAAAAATAGAAATATCTAAGTTAGCTCGAACAATTTCTTTGTATTTTAGGTTTCCCTTATCGATAATGTAGTAAGCATATGAGTGAGCAGAAGAAGTAATCACTCAGTCTCATTTTTTATAAACCGTTAAACTTGAAGCAGTTGTTGATGATGATCCTAATAATGGACAGTACTCATTCTCAAAAAAATGATCCTAATAATGGACAGTACTCCAACAGCGTTGAACGTGTCTCTTGTCAGATATTTATGGCCTTCTTTCTGAGCATATTTTATCAAAAAAAAATGATGCCTGGTTGTTATAGTTTGTGTTACTGCAGTATACTGTGTGTTCCTCTTGTTATTGTTTGAAGAAAGATAAATTAGAGAAAGGAGGGAGGATTTATCTGTCCAGTGCTTTCTTTGAGCTTACTGTTGGTTATTATCTCATGTTGCAGGCAGCAGATGAATGCACATTGGTGCTTGAACTTGATCAAAAACACACAGGCGCGCTGATGTTGCGCGCTCAAACCTTAGTCACCCTCAAGGAGTACCATTCAGCACTTTTTGATGTCAACAGGTTAATTGAATTGA</genome_strand>
        <mrna_strand>TCAATTCCCCCAATTTTTCAGATTCAAGTTACTGTTATTCGGGTAAATTTCTTCGAATTAGGGTGCATACAAACATGGCCTCATCAGCTGCCATCAACAACATCGAAAGAGCTCACCAGATGTACAGGGAAGGTAGATATGCCCAAGCTCTGGGTTTTTATACCGATGCTCTTTCTTTGGCTAAAACAAACTCCCAAAAGATCGCTCTTCACAGTAATCGTGCTGCTTGTTTCCTCAAACTTCACGATTTCAAAAAG............................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGGTTTTCCTTGTTGGTTGGCTCTTTATATCTCAAAATACAAGGACTTGGATGAGTAGCTTAAGATCTTAACTGATTTGCTCATCATGAAGTGAATATTGTATTGGACTCTAGCAGAGGCGTAGCCAGGATTTTAGTGAAGGGTGTTCGAACTTCGAAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGATGAATGCACATTGGTGCTTGAACTTGATCAAAAACACACAGGCGCGCTGATGTTGCGCGCTCAAACCTTAGTCACCCTCAAGGAGTACCATTCAGCACTTTTTGATGTCAACAGGTTAATTGAATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ub6JIr/lycopersicum_combined_unigene_seqs" ref_id="SGN-U342406" ref_strand="+" ref_description="SGN-U342406        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr3:4094424-4095044 REVERSE | Aliases: MJM20.1(evalue: 2e-73, score=272) genbank/nr: gi|15230623|ref|NP_187893.1| hypothetical protein [Arabidopsis thaliana] gi|6997162|gb|AAF34826.1| hypothetical protein [Arabidopsis thaliana] gi|9279771|dbj|BAB01416.1| gb|AAF34826.1~gene_id:MJM20.1~similar to unknown protein [Arabidopsis thaliana](evalue: 2e-71, score=272)">
      <seq>aacagttcaatcatggaatccaagccctcacacccacttcaccaaattgcagaaaccccaactcacaagttgcttctcaaacaatggctgaaagaagaagaactcatcctcaacagaatcgctaccaaagaaacccaaatcgattccgtccgcaatgaaatcactcagctctactgcattttcttcctgttccattcgatttcccttatgcttttattcagtgcttcctccaaatgggcctcgagaactgggctctgccaccgttcatggatcccgtcaatctgttctctcctctgttctatgggtattatttgggctgttaggtacaagacggatacagagagtcacttagagaaactgttggagagagagaaagaggatgggaaattactggcaaagtgtgtggaggagctgaagagaaaaggggtggaatttgatttgttgaaggaagttgatgctcttaggagggctaagagcttgagggttgaagctaaggtggttcgaaaatggtcagctagagactttgtgtctctgtttttcttctctgttacttgcctggtactcgctttaaccaggaccattttgtgtaattgatacttactacaactgaatcggaaaattaattgtggggaagttactcttctgctttttatattttaatttgattcttatttggcaatgaatttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0174J08-R85pX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0174J08.1" temp_strand="+" temp_description="C07HBa0174J08.1  AC212636.1 htgs_phase:3 submitted_to_sgn_as:gi|158262131|gb|AC212636.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0174J08, complete sequence">
        <position start="13119" stop="14410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13419" g_stop="14116" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0174J08.1" gen_strand="+" ref_id="SGN-U342406" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0174J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U342406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13419" e_stop="14116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGTTCAATCATGGAATCCAAGCCCTCACACCCACTTCACCAAATTGCAGAAACCCCAACTCACAAGTTGCTTCTCAAACAATGGCTGAAAGAAGAAGAACTCATCCTCAACAGAATCGCTACCAAAGAAACCCAAATCGATTCCGTCCGCAATGAAATCACTCAGCTCTACTGCATTTTCTTCCTGTTCCATTCGATTTCCCTTATGCTTTTATTCAGTGCTTCCTCCAAATGGGCCTCGAGAACTGGGCTCTGCCACCGTTCATGGATCCCGTCAATCTGTTCTCTCCTCTGTTCTATGGGTATTATTTGGGCTGTTAGGTACAAGACGGATACAGAGAGTCACTTAGAGAAACTGTTGGAGAGAGAGAAAGAGGATGGGAAATTACTGGCAAAGTGTGTGGAGGAGCTGAAGAGAAAAGGGGTGGAATTTGATTTGTTGAAGGAAGTTGATGCTCTTAGGAGGGCTAAGAGCTTGAGGGTTGAAGCTAAGGTGGTTCGAAAATGGTCAGCTAGAGACTTTGTGTCTCTGTTTTTCTTCTCTGTTACTTGCCTGGTACTCGCTTTAACCAGGACCATTTTGTGTAATTGATACTTACTACAACTGAATCGGAAAATTAATTGTGGGGAAGTTACTCTTCTGCTTTTTATATTTTAATTTGATTCTTATTTGGCAATGAATTTTTAACATTTTGG</genome_strand>
        <mrna_strand>AACAGTTCAATCATGGAATCCAAGCCCTCACACCCACTTCACCAAATTGCAGAAACCCCAACTCACAAGTTGCTTCTCAAACAATGGCTGAAAGAAGAAGAACTCATCCTCAACAGAATCGCTACCAAAGAAACCCAAATCGATTCCGTCCGCAATGAAATCACTCAGCTCTACTGCATTTTCTTCCTGTTCCATTCGATTTCCCTTATGCTTTTATTCAGTGCTTCCTCCAAATGGGCCTCGAGAACTGGGCTCTGCCACCGTTCATGGATCCCGTCAATCTGTTCTCTCCTCTGTTCTATGGGTATTATTTGGGCTGTTAGGTACAAGACGGATACAGAGAGTCACTTAGAGAAACTGTTGGAGAGAGAGAAAGAGGATGGGAAATTACTGGCAAAGTGTGTGGAGGAGCTGAAGAGAAAAGGGGTGGAATTTGATTTGTTGAAGGAAGTTGATGCTCTTAGGAGGGCTAAGAGCTTGAGGGTTGAAGCTAAGGTGGTTCGAAAATGGTCAGCTAGAGACTTTGTGTCTCTGTTTTTCTTCTCTGTTACTTGCCTGGTACTCGCTTTAACCAGGACCATTTTGTGTAATTGATACTTACTACAACTGAATCGGAAAATTAATTGTGGGGAAGTTACTCTTCTGCTTTTTATATTTTAATTTGATTCTTATTTGGCAATGAATTTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ub6JIr/lycopersicum_combined_unigene_seqs" ref_id="SGN-U331967" ref_strand="+" ref_description="SGN-U331967        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT1G56140.1 | Symbol: None | leucine-rich repeat family protein / protein kinase family protein, contains Pfam domains PF00560: Leucine Rich Repeat and PF00069: Protein kinase domain | chr1:21005239-21011474 REVERSE | Aliases: T6H22.26, T6H22_26 (evalue: 2e-121, score=432) genbank/nr: gi|18405700|ref|NP_564709.1| receptor-related protein kinase -related [Arabidopsis thaliana](evalue: 2e-119, score=432)">
      <seq>tgttgctgttaaacaactgtctgtggcatcacaccaaggaaagagtcagtttgtggccgagattgctactatatcagctgtacaacaccgtaatcttgtgaagctctatggttgctgcatcgagggagacaggcgattacttgtttatgagtaccttgaaaacaagagtcttgatcaagcattatttgagaaaggatctctatatcttgattggccaacacgcttccagatatgcttgggagtagcaaagggtctggcgtatcttcatgaggaatctcgagtccgtattgtccatcgagatgtcaaggccagtaatatcctgcttgatgcagatctaaacccaaaaatttcagactttggattggcaaaactttatgatgacaaacagacgcatataaacactcgtgttgctggcacaatagggtatcttgcaccagaatatgccatgcgcggacatctgacagagaaggctgatgtgtttgggtttggagttgtagctctagaaattgtcagtggtagaacaaattctgatgagagcttggaagaagacaagatctaccttcttgagtgggcttggcagcttcatgagaacaagcgcgaaactgagctagtggatgcaaatttatctgaatttgatgtagaagaagtgaaaaaagtaatagggatagctctactatgcactcaaacatccccaggattacgaccctcaatgtcccgtgcaatagcaatgcttacaggagacgctgaggttgcggctgtgacttcgagacctggatacctgactgactggaaattcaaagatacaacccccttcatgagtgatcatttttcgcaaatgccagattcatcagtgggttcaagtagagccccaactacaaattattcaccatcaggtcaggacacaccaatgctcagtgacatcattggagagggtagatgaagtcttttgcatttttcagtcagagataaacttttccctttttgtttgcatgtattataaccatttgtgtataggttagattctttctgcatgtatattattatacccataggtaatggttgagagattgctatgccaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0174J08-R85pX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0174J08.1" temp_strand="-" temp_description="C07HBa0174J08.1  AC212636.1 htgs_phase:3 submitted_to_sgn_as:gi|158262131|gb|AC212636.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0174J08, complete sequence">
        <position start="15971" stop="13915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15671" g_stop="15484" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15483" i_stop="15367" i_length="117">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.022" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15366" g_stop="15135" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="420" r_length="232" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15134" i_stop="15046" i_length="89">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15045" g_stop="14895" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="571" r_length="151" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14894" i_stop="14679" i_length="216">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14678" g_stop="14218" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="1034" r_length="463" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1078" polyA_stop="1097"/>
      <MATCH_line gen_id="C07HBa0174J08.1" gen_strand="-" ref_id="SGN-U331967" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>1032</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0174J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U331967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15671" e_stop="15484"/>
          <exon e_start="15366" e_stop="15135"/>
          <exon e_start="15045" e_stop="14895"/>
          <exon e_start="14678" e_stop="14218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGCTGTTAAACAACTGTCTGTGGCATCACACCAAGGAAAGAGTCAGTTTGTGGCCGAGATTGCTACTATATCAGCTGTACAACACCGTAATCTTGTGAAGCTCTATGGTTGCTGCATCGAGGGAGACAGGCGATTACTTGTTTATGAGTACCTTGAAAACAAGAGTCTTGATCAAGCATTATTTGGTACTAATGAAATACAATATCTTGGAATTTCTGCCTTTCCTCATATAAGAGATGAAAAAAATTAAACTTGCTGATATTTATACAATGATTATTGAGATTATAGCTTCAATTGCGCAGAGAAAGGATCTCTATATCTTGATTGGCCAACACGCTTCCAGATATGCTTGGGAGTAGCAAAGGGTCTAGCGTATCTTCATGAGGAATCTCGAGTCCGTATTGTCCATCGAGATGTGAAGGCCAGTAATATCCTGCTTGATGCAGATCTAAACCCAAAAATTTCAGACTTTGGATTGGCAAAACTTTATGATGACAAACAGACGCATATAAACACTCGTGTTGCTGGCACAATGTAAGATCCTGAAAATGGAAAATGTGTCATATTCTTAGACTCCTTTTCTTCTATAGTTTGGTTTCATTCTCATTAGCATTTTCTTGTAGAGGGTATCTTGCACCAGAATATGCCATGCGCGGACATCTGACAGAGAAGGCTGATGTGTTTGGCTTTGGAGTTGTAGCTCTAGAAATTGTCAGTGGTAGAACAAATTCTGATGAGAGCTTGGAAGAAGACAAGATCTACCTTCTTGAGTGGGTAAAGTCCTTTCCTTCTTTGCTTTTAGTAAAGTATTAGAACAATGTGCTTTCATTGCTGCTCCAAGTGCTTATCAGGAATGATATACCACTTGGATTAACGAAATGGAAGAATATCTTCCTTTGCAATTTCTATTTCTTTTTTAATCTTGAAGGATGCTCTACTGTGGTTCCTACATTTATTGTTTAGATCTAACCATATTCATTGCTCTTCTAGGCTTGGCAGCTTCATGAGAACAAGCGCGAAACTGAGCTAGTGGATGCAAATTTATCTGAATTTGATGTAGAAGAAGTGAAAAAAGTAATAGGGATAGCTCTACTATGCACTCAAACATCCCCAGGATTACGACCCTCAATGTCCCGTGCAATAGCAATGCTTACAGGAGATGCTGAGGTTGCGGCTGTGACTTCGAGACCTGGATACCTGACTGACTGGAAATTCAAAGATACAACAACCTTCATGAGTGGTCATTCTTCGCAAATGCCAGATTTATCAGTGGGTACAAGTAGAGCCCCAACTACAGGTTATTCACCATCAGGTCAGGACACACCAATGCTCAGTGACATCATTGGAGAGGGTAGATGAAATC--TTGCATTTTTCAGTCAGAGATAAACTTTTACCCTTTTGTTTGCATGTATTATAACCATTTGTGTATAGCTTAGATTCTTTCTGCATGT</genome_strand>
        <mrna_strand>TGTTGCTGTTAAACAACTGTCTGTGGCATCACACCAAGGAAAGAGTCAGTTTGTGGCCGAGATTGCTACTATATCAGCTGTACAACACCGTAATCTTGTGAAGCTCTATGGTTGCTGCATCGAGGGAGACAGGCGATTACTTGTTTATGAGTACCTTGAAAACAAGAGTCTTGATCAAGCATTATTTG.....................................................................................................................AGAAAGGATCTCTATATCTTGATTGGCCAACACGCTTCCAGATATGCTTGGGAGTAGCAAAGGGTCTGGCGTATCTTCATGAGGAATCTCGAGTCCGTATTGTCCATCGAGATGTCAAGGCCAGTAATATCCTGCTTGATGCAGATCTAAACCCAAAAATTTCAGACTTTGGATTGGCAAAACTTTATGATGACAAACAGACGCATATAAACACTCGTGTTGCTGGCACAAT.........................................................................................AGGGTATCTTGCACCAGAATATGCCATGCGCGGACATCTGACAGAGAAGGCTGATGTGTTTGGGTTTGGAGTTGTAGCTCTAGAAATTGTCAGTGGTAGAACAAATTCTGATGAGAGCTTGGAAGAAGACAAGATCTACCTTCTTGAGTGG........................................................................................................................................................................................................................GCTTGGCAGCTTCATGAGAACAAGCGCGAAACTGAGCTAGTGGATGCAAATTTATCTGAATTTGATGTAGAAGAAGTGAAAAAAGTAATAGGGATAGCTCTACTATGCACTCAAACATCCCCAGGATTACGACCCTCAATGTCCCGTGCAATAGCAATGCTTACAGGAGACGCTGAGGTTGCGGCTGTGACTTCGAGACCTGGATACCTGACTGACTGGAAATTCAAAGATACAACCCCCTTCATGAGTGATCATTTTTCGCAAATGCCAGATTCATCAGTGGGTTCAAGTAGAGCCCCAACTACAAATTATTCACCATCAGGTCAGGACACACCAATGCTCAGTGACATCATTGGAGAGGGTAGATGAAGTCTTTTGCATTTTTCAGTCAGAGATAAACTTTTCCCTTTTTGTTTGCATGTATTATAACCATTTGTGTATAGGTTAGATTCTTTCTGCATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>10</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="7670" PGL_stop="2464"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5614" e_stop="5557"/>
            <exon e_start="5471" e_stop="5160"/>
            <exon e_start="4884" e_stop="4839"/>
            <exon e_start="3423" e_stop="3345"/>
            <exon e_start="3233" e_stop="2464"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.959" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.940" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.283" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5614" e_stop="5557" e_length="58"/>
          </exon>
          <intron i_serial="1" don_prob="0.959" acc_prob="0.996">
            <gDNA_intron_boundary i_start="5556" i_stop="5472" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5471" e_stop="5160" e_length="312"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.940">
            <gDNA_intron_boundary i_start="5159" i_stop="4885" i_length="275"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="4884" e_stop="4839" e_length="46"/>
          </exon>
          <intron i_serial="3" don_prob="0.938" acc_prob="0.283">
            <gDNA_intron_boundary i_start="4838" i_stop="3424" i_length="1415"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="3423" e_stop="3345" e_length="79"/>
          </exon>
          <intron i_serial="4" don_prob="0.983" acc_prob="0.998">
            <gDNA_intron_boundary i_start="3344" i_stop="3234" i_length="111"/>
          </intron>
          <exon e_serial="5" e_score="0.994">
            <gDNA_exon_boundary e_start="3233" e_stop="2464" e_length="770"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5614" stop="5557"/>
              <exon start="5471" stop="5160"/>
              <exon start="4884" stop="4839"/>
              <exon start="3423" stop="3345"/>
              <exon start="3233" stop="2964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3000" stop="2464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329950" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACACAGTGCATCATTCTTTCAGTGGTTCTGTAGACGGAAGAGGAAGTAATGGTGACG : CTTCAAAGCACGCTTTGCAAAGGTTTTCCAGCCCTTACATAACACCACTGCTTACTCCAAGTGACACACCAAAAATAGCTTCTGCTAGTGTATCCCCCAGACGATGTTCTGCTGCAGTATCTCCTCGGAGGATATCTGGCAGTACCTCTCCAACAATTCCTCAATTTCAACGCCGGACATCTGGCAGTACCTCTCCAACAATTCCTCAATTTCAACGTCGAGTTTCAATGTCATCATTCTATTCTTCGAGTCAACAGTCGAGTCAACAGTCCTCAGCAGCTAACTCTCCTCCAAGGGCACGGCCAAAACCAG : CTCAAACTCCTCGAGCTGATGGGAAGGAGTTCTTCCGTCAAGCCAG : GAGTCGTCTGTCTTATGAGCAGTTCAGTGCGTTTCTAGCAAACATAAAGGAACTAAATGCTCAAAAGCAATCTCGTGAG : GAAACTTTGAAAAAAGCAGAAGAGATTTTTGGAACGGATAACAAGGATCTCTATCTATCATTCCAAGGGATGCTTAACCGTGGTGTTCGTTGACAGTACAAAAAGTCATCTTGGGTGTATATTCCCATCTTATGGTAGCTTAAACATTTAACATAAGTCTTGCTTAGTGATCTAAAGTTGACCAAAGGACTTGTGGAACTCTTGATCTATGTTCCAATTTGAGGTGCAGTATCGCTAAACATCAGCTCAAAATCTTTTGAGGTGCAACCTTATAGATTTTCAAACAATTGAGATTGGTACAGATTGTGCTATTGCTAGCTGATGAGTCGATGATCTCATGTTTAAATTCTCATTAAACCATGGATGCATGCTGTAAATTGTTCCCTTCTTTTTCTCTTGTTTCAGTTTTGCATTTTCAATTTTACCGTCACGTGTAGCACATCTGAGAGGAGCGGGTGGTGCCAGCAGATGGCAGTTGAATCAACTCGTAAGTTGAATTTCCTTCTGTTGCTGCTCTCGCTCTTTCATTTGCACGTGTATGGGTATGTATATTTTCTTCTGCTTTACTGTCAGCAGCTTGAAATTTTCTTCTGTGGAGAAATGAGTATCTGCAGTATTGGCACTAGTAGTGTTATCATGCAGACATTAATATGTAAATTGAAGGGTATACTATTGATACTTAGCATCCATAACTAGGAAACGAAAACTCTGATGTTGTAGTTGTATCTGCTGTAAGAATCTAATACAACACACTATCAATTCATTGAATT</gDNA_template>
            <first_frame> Y  T  V  H  H  S  F  S  G  S  V  D  G  R  G  S  N  G  D   : A  S  K  H  A  L  Q  R  F  S  S  P  Y  I  T  P  L  L  T  P  S  D  T  P  K  I  A  S  A  S  V  S  P  R  R  C  S  A  A  V  S  P  R  R  I  S  G  S  T  S  P  T  I  P  Q  F  Q  R  R  T  S  G  S  T  S  P  T  I  P  Q  F  Q  R  R  V  S  M  S  S  F  Y  S  S  S  Q  Q  S  S  Q  Q  S  S  A  A  N  S  P  P  R  A  R  P  K  P   : A  Q  T  P  R  A  D  G  K  E  F  F  R  Q  A  R :   S  R  L  S  Y  E  Q  F  S  A  F  L  A  N  I  K  E  L  N  A  Q  K  Q  S  R  E  :  E  T  L  K  K  A  E  E  I  F  G  T  D  N  K  D  L  Y  L  S  F  Q  G  M  L  N  R  G  V  R  *  Q  Y  K  K  S  S  W  V  Y  I  P  I  L  W  *  L  K  H  L  T  *  V  L  L  S  D  L  K  L  T  K  G  L  V  E  L  L  I  Y  V  P  I  *  G  A  V  S  L  N  I  S  S  K  S  F  E  V  Q  P  Y  R  F  S  N  N  *  D  W  Y  R  L  C  Y  C  *  L  M  S  R  *  S  H  V  *  I  L  I  K  P  W  M  H  A  V  N  C  S  L  L  F  L  L  F  Q  F  C  I  F  N  F  T  V  T  C  S  T  S  E  R  S  G  W  C  Q  Q  M  A  V  E  S  T  R  K  L  N  F  L  L  L  L  L  S  L  F  H  L  H  V  Y  G  Y  V  Y  F  L  L  L  Y  C  Q  Q  L  E  I  F  F  C  G  E  M  S  I  C  S  I  G  T  S  S  V  I  M  Q  T  L  I  C  K  L  K  G  I  L  L  I  L  S  I  H  N  *  E  T  K  T  L  M  L  *  L  Y  L  L  *  E  S  N  T  T  H  Y  Q  F  I  E   </first_frame>
            <second_frame>  T  Q  C  I  I  L  S  V  V  L  *  T  E  E  E  V  M  V  T  :  L  Q  S  T  L  C  K  G  F  P  A  L  T  *  H  H  C  L  L  Q  V  T  H  Q  K  *  L  L  L  V  Y  P  P  D  D  V  L  L  Q  Y  L  L  G  G  Y  L  A  V  P  L  Q  Q  F  L  N  F  N  A  G  H  L  A  V  P  L  Q  Q  F  L  N  F  N  V  E  F  Q  C  H  H  S  I  L  R  V  N  S  R  V  N  S  P  Q  Q  L  T  L  L  Q  G  H  G  Q  N  Q  :  L  K  L  L  E  L  M  G  R  S  S  S  V  K  P   : G  V  V  C  L  M  S  S  S  V  R  F  *  Q  T  *  R  N  *  M  L  K  S  N  L  V  R :   K  L  *  K  K  Q  K  R  F  L  E  R  I  T  R  I  S  I  Y  H  S  K  G  C  L  T  V  V  F  V  D  S  T  K  S  H  L  G  C  I  F  P  S  Y  G  S  L  N  I  *  H  K  S  C  L  V  I  *  S  *  P  K  D  L  W  N  S  *  S  M  F  Q  F  E  V  Q  Y  R  *  T  S  A  Q  N  L  L  R  C  N  L  I  D  F  Q  T  I  E  I  G  T  D  C  A  I  A  S  *  *  V  D  D  L  M  F  K  F  S  L  N  H  G  C  M  L  *  I  V  P  F  F  F  S  C  F  S  F  A  F  S  I  L  P  S  R  V  A  H  L  R  G  A  G  G  A  S  R  W  Q  L  N  Q  L  V  S  *  I  S  F  C  C  C  S  R  S  F  I  C  T  C  M  G  M  Y  I  F  F  C  F  T  V  S  S  L  K  F  S  S  V  E  K  *  V  S  A  V  L  A  L  V  V  L  S  C  R  H  *  Y  V  N  *  R  V  Y  Y  *  Y  L  A  S  I  T  R  K  R  K  L  *  C  C  S  C  I  C  C  K  N  L  I  Q  H  T  I  N  S  L  N  </second_frame>
            <third_frame>   H  S  A  S  F  F  Q  W  F  C  R  R  K  R  K  *  W  *  R :   F  K  A  R  F  A  K  V  F  Q  P  L  H  N  T  T  A  Y  S  K  *  H  T  K  N  S  F  C  *  C  I  P  Q  T  M  F  C  C  S  I  S  S  E  D  I  W  Q  Y  L  S  N  N  S  S  I  S  T  P  D  I  W  Q  Y  L  S  N  N  S  S  I  S  T  S  S  F  N  V  I  I  L  F  F  E  S  T  V  E  S  T  V  L  S  S  *  L  S  S  K  G  T  A  K  T  S :   S  N  S  S  S  *  W  E  G  V  L  P  S  S  Q  :  E  S  S  V  L  *  A  V  Q  C  V  S  S  K  H  K  G  T  K  C  S  K  A  I  S  *   : G  N  F  E  K  S  R  R  D  F  W  N  G  *  Q  G  S  L  S  I  I  P  R  D  A  *  P  W  C  S  L  T  V  Q  K  V  I  L  G  V  Y  S  H  L  M  V  A  *  T  F  N  I  S  L  A  *  *  S  K  V  D  Q  R  T  C  G  T  L  D  L  C  S  N  L  R  C  S  I  A  K  H  Q  L  K  I  F  *  G  A  T  L  *  I  F  K  Q  L  R  L  V  Q  I  V  L  L  L  A  D  E  S  M  I  S  C  L  N  S  H  *  T  M  D  A  C  C  K  L  F  P  S  F  S  L  V  S  V  L  H  F  Q  F  Y  R  H  V  *  H  I  *  E  E  R  V  V  P  A  D  G  S  *  I  N  S  *  V  E  F  P  S  V  A  A  L  A  L  S  F  A  R  V  W  V  C  I  F  S  S  A  L  L  S  A  A  *  N  F  L  L  W  R  N  E  Y  L  Q  Y  W  H  *  *  C  Y  H  A  D  I  N  M  *  I  E  G  Y  T  I  D  T  *  H  P  *  L  G  N  E  N  S  D  V  V  V  V  S  A  V  R  I  *  Y  N  T  L  S  I  H  *  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0174J08.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5614" stop="5557"/>
                    <exon start="5471" stop="5160"/>
                    <exon start="4884" stop="4839"/>
                    <exon start="3423" stop="3345"/>
                    <exon start="3233" stop="3141"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>585</number_coding_nucleotides>
                  <number_encoded_amino_acids>195</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YTVHHSFSGSVDGRGSNGDASKHALQRFSSPYITPLLTPSDTPKIASASVSPRRCSAAVSPRRISGSTSPTIPQFQRRTSGSTSPTIPQFQRRVSMSSFYSSSQQSSQQSSAANSPPRARPKPAQTPRADGKEFFRQARSRLSYEQFSAFLANIKELNAQKQSREETLKKAEEIFGTDNKDLYLSFQGMLNRGVR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0174J08.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2888" stop="2538"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILIKPWMHAVNCSLLFLLFQFCIFNFTVTCSTSERSGWCQQMAVESTRKLNFLLLLLSLFHLHVYGYVYFLLLYCQQLEIFFCGEMSICSIGTSSVIMQTLICKLKGILLILSIHN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="5115" e_stop="4839"/>
            <exon e_start="3500" e_stop="3345"/>
            <exon e_start="3233" e_stop="3093"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.938" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5115" e_stop="4839" e_length="277"/>
          </exon>
          <intron i_serial="1" don_prob="0.938" acc_prob="0.000">
            <gDNA_intron_boundary i_start="4838" i_stop="3501" i_length="1338"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="3500" e_stop="3345" e_length="156"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.998">
            <gDNA_intron_boundary i_start="3344" i_stop="3234" i_length="111"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="3233" e_stop="3093" e_length="141"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5115" stop="4839"/>
              <exon start="3500" stop="3345"/>
              <exon start="3233" stop="3093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319789" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTATACAAATGTTACTGCTGTAGATGTCGTTACACACATTGAGAGTCATTCTTTATATGAGATGCAAACTTGTGTTGACTCCAATATTTACATTATATACACAATTTTGCTTTAGTGTAAGAATGATTCTATACGTGTGTAACAAACACTCAACAACTTTTGCTAGCTGATATTGTTTCCTTTTGGACAAATTGTTTATTACTAATTAGTTCATGTATGTGAATTTTAAGCTCAAACTCCTCGAGCTGATGGGAAGGAGTTCTTCCGTCAAGCCAG : GTATCTAAATCTTTGACTTTTGTTCTTTTTAATTTTTTTGAGTAAACGATCCTGATGACCAGCATGTGTTGACTCAGGAGTCGTCTGTCTTATGAGCAGTTCAGTGCGTTTCTAGCAAACATAAAGGAACTAAATGCTCAAAAGCAATCTCGTGAG : GAAACTTTGAAAAAAGCAGAAGAGATTTTTGGAACGGATAACAAGGATCTCTATCTATCATTCCAAGGGATGCTTAACCGTGGTGTTCGTTGACAGTACAAAAAGTCATCTTGGGTGTATATTCCCATCTTATGGTAGCTT</gDNA_template>
            <first_frame> L  I  Q  M  L  L  L  *  M  S  L  H  T  L  R  V  I  L  Y  M  R  C  K  L  V  L  T  P  I  F  T  L  Y  T  Q  F  C  F  S  V  R  M  I  L  Y  V  C  N  K  H  S  T  T  F  A  S  *  Y  C  F  L  L  D  K  L  F  I  T  N  *  F  M  Y  V  N  F  K  L  K  L  L  E  L  M  G  R  S  S  S  V  K  P   : G  I  *  I  F  D  F  C  S  F  *  F  F  *  V  N  D  P  D  D  Q  H  V  L  T  Q  E  S  S  V  L  *  A  V  Q  C  V  S  S  K  H  K  G  T  K  C  S  K  A  I  S  *   : G  N  F  E  K  S  R  R  D  F  W  N  G  *  Q  G  S  L  S  I  I  P  R  D  A  *  P  W  C  S  L  T  V  Q  K  V  I  L  G  V  Y  S  H  L  M  V  A  </first_frame>
            <second_frame>  L  Y  K  C  Y  C  C  R  C  R  Y  T  H  *  E  S  F  F  I  *  D  A  N  L  C  *  L  Q  Y  L  H  Y  I  H  N  F  A  L  V  *  E  *  F  Y  T  C  V  T  N  T  Q  Q  L  L  L  A  D  I  V  S  F  W  T  N  C  L  L  L  I  S  S  C  M  *  I  L  S  S  N  S  S  S  *  W  E  G  V  L  P  S  S  Q  :  V  S  K  S  L  T  F  V  L  F  N  F  F  E  *  T  I  L  M  T  S  M  C  *  L  R  S  R  L  S  Y  E  Q  F  S  A  F  L  A  N  I  K  E  L  N  A  Q  K  Q  S  R  E  :  E  T  L  K  K  A  E  E  I  F  G  T  D  N  K  D  L  Y  L  S  F  Q  G  M  L  N  R  G  V  R  *  Q  Y  K  K  S  S  W  V  Y  I  P  I  L  W  *  L </second_frame>
            <third_frame>   Y  T  N  V  T  A  V  D  V  V  T  H  I  E  S  H  S  L  Y  E  M  Q  T  C  V  D  S  N  I  Y  I  I  Y  T  I  L  L  *  C  K  N  D  S  I  R  V  *  Q  T  L  N  N  F  C  *  L  I  L  F  P  F  G  Q  I  V  Y  Y  *  L  V  H  V  C  E  F  *  A  Q  T  P  R  A  D  G  K  E  F  F  R  Q  A  R :   Y  L  N  L  *  L  L  F  F  L  I  F  L  S  K  R  S  *  *  P  A  C  V  D  S  G  V  V  C  L  M  S  S  S  V  R  F  *  Q  T  *  R  N  *  M  L  K  S  N  L  V  R :   K  L  *  K  K  Q  K  R  F  L  E  R  I  T  R  I  S  I  Y  H  S  K  G  C  L  T  V  V  F  V  D  S  T  K  S  H  L  G  C  I  F  P  S  Y  G  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0174J08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="7661" e_stop="7588"/>
            <exon e_start="5441" e_stop="5160"/>
            <exon e_start="4884" e_stop="4839"/>
            <exon e_start="3423" e_stop="3345"/>
            <exon e_start="3233" e_stop="3172"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.892"/>
          <exon-intron don_prob="0.990" acc_prob="0.940" e_score="0.940"/>
          <exon-intron don_prob="0.938" acc_prob="0.283" e_score="0.957"/>
          <exon-intron don_prob="0.983" acc_prob="0.998" e_score="0.937"/>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.892">
            <gDNA_exon_boundary e_start="7661" e_stop="7588" e_length="74"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="7587" i_stop="5442" i_length="2146"/>
          </intron>
          <exon e_serial="2" e_score="0.940">
            <gDNA_exon_boundary e_start="5441" e_stop="5160" e_length="282"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.940">
            <gDNA_intron_boundary i_start="5159" i_stop="4885" i_length="275"/>
          </intron>
          <exon e_serial="3" e_score="0.957">
            <gDNA_exon_boundary e_start="4884" e_stop="4839" e_length="46"/>
          </exon>
          <intron i_serial="3" don_prob="0.938" acc_prob="0.283">
            <gDNA_intron_boundary i_start="4838" i_stop="3424" i_length="1415"/>
          </intron>
          <exon e_serial="4" e_score="0.937">
            <gDNA_exon_boundary e_start="3423" e_stop="3345" e_length="79"/>
          </exon>
          <intron i_serial="4" don_prob="0.983" acc_prob="0.998">
            <gDNA_intron_boundary i_start="3344" i_stop="3234" i_length="111"/>
          </intron>
          <exon e_serial="5" e_score="0.935">
            <gDNA_exon_boundary e_start="3233" e_stop="3172" e_length="62"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7661" stop="7588"/>
              <exon start="5441" stop="5160"/>
              <exon start="4884" stop="4839"/>
              <exon start="3423" stop="3345"/>
              <exon start="3233" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336920" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTCCATTTCCAAACCCCATTTTCTCAGAAATTAGGGTTTGGAGATGTCGGACAACAGCATCATTGAAAGCA : GCCCTTACATAACACCACTGCTTACTCCAAGTGACACACCAAAAATAGCTTCTGCTAGTGTATCCCCCAGACGATGTTCTGCTGCAGTATCTCCTCGGAGGATATCTGGCAGTACCTCTCCAACAATTCCTCAATTTCAACGCCGGACATCTGGCAGTACCTCTCCAACAATTCCTCAATTTCAACGTCGAGTTTCAATGTCATCATTCTATTCTTCGAGTCAACAGTCGAGTCAACAGTCCTCAGCAGCTAACTCTCCTCCAAGGGCACGGCCAAAACCAG : CTCAAACTCCTCGAGCTGATGGGAAGGAGTTCTTCCGTCAAGCCAG : GAGTCGTCTGTCTTATGAGCAGTTCAGTGCGTTTCTAGCAAACATAAAGGAACTAAATGCTCAAAAGCAATCTCGTGAG : GAAACTTTGAAAAAAGCAGAAGAGATTTTTGGAACGGATAACAAGGATCTCTATCTATCATT</gDNA_template>
            <first_frame> F  L  H  F  Q  T  P  F  S  Q  K  L  G  F  G  D  V  G  Q  Q  H  H  *  K  Q :   P  L  H  N  T  T  A  Y  S  K  *  H  T  K  N  S  F  C  *  C  I  P  Q  T  M  F  C  C  S  I  S  S  E  D  I  W  Q  Y  L  S  N  N  S  S  I  S  T  P  D  I  W  Q  Y  L  S  N  N  S  S  I  S  T  S  S  F  N  V  I  I  L  F  F  E  S  T  V  E  S  T  V  L  S  S  *  L  S  S  K  G  T  A  K  T  S :   S  N  S  S  S  *  W  E  G  V  L  P  S  S  Q  :  E  S  S  V  L  *  A  V  Q  C  V  S  S  K  H  K  G  T  K  C  S  K  A  I  S  *   : G  N  F  E  K  S  R  R  D  F  W  N  G  *  Q  G  S  L  S  I  I </first_frame>
            <second_frame>  F  S  I  S  K  P  H  F  L  R  N  *  G  L  E  M  S  D  N  S  I  I  E  S   : S  P  Y  I  T  P  L  L  T  P  S  D  T  P  K  I  A  S  A  S  V  S  P  R  R  C  S  A  A  V  S  P  R  R  I  S  G  S  T  S  P  T  I  P  Q  F  Q  R  R  T  S  G  S  T  S  P  T  I  P  Q  F  Q  R  R  V  S  M  S  S  F  Y  S  S  S  Q  Q  S  S  Q  Q  S  S  A  A  N  S  P  P  R  A  R  P  K  P   : A  Q  T  P  R  A  D  G  K  E  F  F  R  Q  A  R :   S  R  L  S  Y  E  Q  F  S  A  F  L  A  N  I  K  E  L  N  A  Q  K  Q  S  R  E  :  E  T  L  K  K  A  E  E  I  F  G  T  D  N  K  D  L  Y  L  S   </second_frame>
            <third_frame>   S  P  F  P  N  P  I  F  S  E  I  R  V  W  R  C  R  T  T  A  S  L  K  A  :  A  L  T  *  H  H  C  L  L  Q  V  T  H  Q  K  *  L  L  L  V  Y  P  P  D  D  V  L  L  Q  Y  L  L  G  G  Y  L  A  V  P  L  Q  Q  F  L  N  F  N  A  G  H  L  A  V  P  L  Q  Q  F  L  N  F  N  V  E  F  Q  C  H  H  S  I  L  R  V  N  S  R  V  N  S  P  Q  Q  L  T  L  L  Q  G  H  G  Q  N  Q  :  L  K  L  L  E  L  M  G  R  S  S  S  V  K  P   : G  V  V  C  L  M  S  S  S  V  R  F  *  Q  T  *  R  N  *  M  L  K  S  N  L  V  R :   K  L  *  K  K  Q  K  R  F  L  E  R  I  T  R  I  S  I  Y  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0174J08.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7624" stop="7588"/>
                    <exon start="5441" stop="5160"/>
                    <exon start="4884" stop="4839"/>
                    <exon start="3423" stop="3345"/>
                    <exon start="3233" stop="3174"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>504</number_coding_nucleotides>
                  <number_encoded_amino_acids>168</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLEMSDNSIIESSPYITPLLTPSDTPKIASASVSPRRCSAAVSPRRISGSTSPTIPQFQRRTSGSTSPTIPQFQRRVSMSSFYSSSQQSSQQSSAANSPPRARPKPAQTPRADGKEFFRQARSRLSYEQFSAFLANIKELNAQKQSREETLKKAEEIFGTDNKDLYLS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="7670" e_stop="7319"/>
            <exon e_start="7219" e_stop="7151"/>
            <exon e_start="6134" e_stop="6081"/>
            <exon e_start="5827" e_stop="5789"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.989" e_score="0.991"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="0.971"/>
          <exon-intron don_prob="0.967" acc_prob="0.993" e_score="0.981"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="7670" e_stop="7319" e_length="352"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.989">
            <gDNA_intron_boundary i_start="7318" i_stop="7220" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="0.971">
            <gDNA_exon_boundary e_start="7219" e_stop="7151" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="7150" i_stop="6135" i_length="1016"/>
          </intron>
          <exon e_serial="3" e_score="0.981">
            <gDNA_exon_boundary e_start="6134" e_stop="6081" e_length="54"/>
          </exon>
          <intron i_serial="3" don_prob="0.967" acc_prob="0.993">
            <gDNA_intron_boundary i_start="6080" i_stop="5828" i_length="253"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="5827" e_stop="5789" e_length="39"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7670" stop="7319"/>
              <exon start="7219" stop="7151"/>
              <exon start="6134" stop="6081"/>
              <exon start="5827" stop="5789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336921" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACACACATTTCTCCATTTCCAAACCCCATTTTCTCAGAAATTAGGGTTTGGAGATGTCGGACAACAGCATCATTGAAAGCAGTCGGAATGCCGGCCCGGATTTTTACCTTCCCGATGAAATACTTTCTGTTATTCCGACGGACCCATATGACCAATTGGACCTTGCCCGGAAGATCACCTCCATGGCAATCGCTTCTCGCGTTACAAGTCTGGAGTCTGACATGGACAGGCTCCGGCAGAATCTTAACGGAAAGGATCGCCTCATCCTCGACCTCGAGGATAAGGTCTCTCAGCTCGAAAACGCCTGTCACCAGGCCGAATTGCGATTGAACATCACCCTCCAAGATAAT : ATGAAACTGTCGAAGGAGAGAGATAATCTGGCTATTACTGCAAAGAAGCTTGGTCGTGACTTAGCAAAG : TTGGAGACCTTTAAAAGGCAATTGGTGCAGTCTTTGAGTGATGATGACTCATCT : CAAGCTGAAACTGTAGATATTGGCATTTATGATCAATCT</gDNA_template>
            <first_frame> S  H  T  F  L  H  F  Q  T  P  F  S  Q  K  L  G  F  G  D  V  G  Q  Q  H  H  *  K  Q  S  E  C  R  P  G  F  L  P  S  R  *  N  T  F  C  Y  S  D  G  P  I  *  P  I  G  P  C  P  E  D  H  L  H  G  N  R  F  S  R  Y  K  S  G  V  *  H  G  Q  A  P  A  E  S  *  R  K  G  S  P  H  P  R  P  R  G  *  G  L  S  A  R  K  R  L  S  P  G  R  I  A  I  E  H  H  P  P  R  *   : Y  E  T  V  E  G  E  R  *  S  G  Y  Y  C  K  E  A  W  S  *  L  S  K   : V  G  D  L  *  K  A  I  G  A  V  F  E  *  *  *  L  I   : S  S  *  N  C  R  Y  W  H  L  *  S  I  </first_frame>
            <second_frame>  H  T  H  F  S  I  S  K  P  H  F  L  R  N  *  G  L  E  M  S  D  N  S  I  I  E  S  S  R  N  A  G  P  D  F  Y  L  P  D  E  I  L  S  V  I  P  T  D  P  Y  D  Q  L  D  L  A  R  K  I  T  S  M  A  I  A  S  R  V  T  S  L  E  S  D  M  D  R  L  R  Q  N  L  N  G  K  D  R  L  I  L  D  L  E  D  K  V  S  Q  L  E  N  A  C  H  Q  A  E  L  R  L  N  I  T  L  Q  D  N  :  M  K  L  S  K  E  R  D  N  L  A  I  T  A  K  K  L  G  R  D  L  A  K  :  L  E  T  F  K  R  Q  L  V  Q  S  L  S  D  D  D  S  S  :  Q  A  E  T  V  D  I  G  I  Y  D  Q  S </second_frame>
            <third_frame>   T  H  I  S  P  F  P  N  P  I  F  S  E  I  R  V  W  R  C  R  T  T  A  S  L  K  A  V  G  M  P  A  R  I  F  T  F  P  M  K  Y  F  L  L  F  R  R  T  H  M  T  N  W  T  L  P  G  R  S  P  P  W  Q  S  L  L  A  L  Q  V  W  S  L  T  W  T  G  S  G  R  I  L  T  E  R  I  A  S  S  S  T  S  R  I  R  S  L  S  S  K  T  P  V  T  R  P  N  C  D  *  T  S  P  S  K  I  I :   *  N  C  R  R  R  E  I  I  W  L  L  L  Q  R  S  L  V  V  T  *  Q  S :   W  R  P  L  K  G  N  W  C  S  L  *  V  M  M  T  H  L :   K  L  K  L  *  I  L  A  F  M  I  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0174J08.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7624" stop="7319"/>
                    <exon start="7219" stop="7151"/>
                    <exon start="6134" stop="6081"/>
                    <exon start="5827" stop="5789"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLEMSDNSIIESSRNAGPDFYLPDEILSVIPTDPYDQLDLARKITSMAIASRVTSLESDMDRLRQNLNGKDRLILDLEDKVSQLENACHQAELRLNITLQDNMKLSKERDNLAITAKKLGRDLAKLETFKRQLVQSLSDDDSSQAETVDIGIYDQS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="8830" PGL_stop="8548"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8830" e_stop="8548"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="8830" e_stop="8548" e_length="283"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8830" stop="8548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341536" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGAAGTCAGTGATGTTCCAAAAATGGAATCGTCTGAACAACCGTCGTCTAGCTGGGAAGCAATCCCACAGCCAAAAGGACATTCACGGCTTGACTATTCAAGATGGGATAGGGTTGAAGATGAGTCTAGTGAAGATGACGATGACGATGATGATGACAATGATTCTCAACCTCAGTATAGATTCCGTGTCAAAACTATTGGTGTACGAGCTGTTAAGTAAGACGAAGAAAGTATTTAATGCAAATTGCATGAATTGGGCCATACAATTCTTTGTTGTTTCCT</gDNA_template>
            <first_frame> L  K  S  V  M  F  Q  K  W  N  R  L  N  N  R  R  L  A  G  K  Q  S  H  S  Q  K  D  I  H  G  L  T  I  Q  D  G  I  G  L  K  M  S  L  V  K  M  T  M  T  M  M  M  T  M  I  L  N  L  S  I  D  S  V  S  K  L  L  V  Y  E  L  L  S  K  T  K  K  V  F  N  A  N  C  M  N  W  A  I  Q  F  F  V  V  S  </first_frame>
            <second_frame>  *  S  Q  *  C  S  K  N  G  I  V  *  T  T  V  V  *  L  G  S  N  P  T  A  K  R  T  F  T  A  *  L  F  K  M  G  *  G  *  R  *  V  *  *  R  *  R  *  R  *  *  *  Q  *  F  S  T  S  V  *  I  P  C  Q  N  Y  W  C  T  S  C  *  V  R  R  R  K  Y  L  M  Q  I  A  *  I  G  P  Y  N  S  L  L  F  P </second_frame>
            <third_frame>   E  V  S  D  V  P  K  M  E  S  S  E  Q  P  S  S  S  W  E  A  I  P  Q  P  K  G  H  S  R  L  D  Y  S  R  W  D  R  V  E  D  E  S  S  E  D  D  D  D  D  D  D  D  N  D  S  Q  P  Q  Y  R  F  R  V  K  T  I  G  V  R  A  V  K  *  D  E  E  S  I  *  C  K  L  H  E  L  G  H  T  I  L  C  C  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0174J08.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8830" stop="8549"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKSVMFQKWNRLNNRRLAGKQSHSQKDIHGLTIQDGIGLKMSLVKMTMTMMMTMILNLSIDSVSKLLVYELLSKTKKVFNANCMNWAIQFFVVS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0174J08.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8828" stop="8610"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVSDVPKMESSEQPSSSWEAIPQPKGHSRLDYSRWDRVEDESSEDDDDDDDDNDSQPQYRFRVKTIGVRAVK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="12293" PGL_stop="9437"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12293" e_stop="12037"/>
            <exon e_start="11656" e_stop="11491"/>
            <exon e_start="9642" e_stop="9507"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.057" e_score="0.988"/>
          <exon-intron don_prob="0.770" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="12293" e_stop="12037" e_length="257"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.057">
            <gDNA_intron_boundary i_start="12036" i_stop="11657" i_length="380"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11656" e_stop="11491" e_length="166"/>
          </exon>
          <intron i_serial="2" don_prob="0.770" acc_prob="1.000">
            <gDNA_intron_boundary i_start="11490" i_stop="9643" i_length="1848"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="9642" e_stop="9507" e_length="136"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12293" stop="12037"/>
              <exon start="11656" stop="11491"/>
              <exon start="9642" stop="9507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAATTCCCCCAATTTTTCAGATTCAAGTTACTGTTATTCGATTAAATTTCTTCGAATTAGGGTACATACAAACATGGCCTCATCAGCTGCCATCAACAACATCGAAAGAGCTCACCAGATGTACAGGGAAGGTAGATATGCCCAAGCTCTGGGTTTTTATACCGATGCTCTTTCTTTGGCTAAAACAAACTCCCAAAAGATCGCTCTTCACAGTAATCGTGCTGCTTGTTTCCTCAAACTTCACGATTTCAAAAAG : GTTCTTGGTTTTCCTTGTTGGTTGGCTCTTTATATCTCAAAATACAAGGACTTGGATGAGTAGCTTAAGATCTTAACTGATTTGCTCATCATGAAGTGAATATTGTATTGGACTCTAGCAGAGGCGTAGCCAGGATTTTAGTGAAGGGTGTTCGAACTTCGAAGAG : GCAGCAGATGAATGCACATTGGTGCTTGAACTTGATCAAAAACACACAGGCGCGCTGATGTTGCGCGCTCAAACCTTAGTCACCCTCAAGGAGTACCATTCAGCACTTTTTGATGTCAACAGGTTAATTGAATTGA</gDNA_template>
            <first_frame> S  I  P  P  I  F  Q  I  Q  V  T  V  I  R  L  N  F  F  E  L  G  Y  I  Q  T  W  P  H  Q  L  P  S  T  T  S  K  E  L  T  R  C  T  G  K  V  D  M  P  K  L  W  V  F  I  P  M  L  F  L  W  L  K  Q  T  P  K  R  S  L  F  T  V  I  V  L  L  V  S  S  N  F  T  I  S  K  R :   F  L  V  F  L  V  G  W  L  F  I  S  Q  N  T  R  T  W  M  S  S  L  R  S  *  L  I  C  S  S  *  S  E  Y  C  I  G  L  *  Q  R  R  S  Q  D  F  S  E  G  C  S  N  F  E  E  :  A  A  D  E  C  T  L  V  L  E  L  D  Q  K  H  T  G  A  L  M  L  R  A  Q  T  L  V  T  L  K  E  Y  H  S  A  L  F  D  V  N  R  L  I  E  L  </first_frame>
            <second_frame>  Q  F  P  Q  F  F  R  F  K  L  L  L  F  D  *  I  S  S  N  *  G  T  Y  K  H  G  L  I  S  C  H  Q  Q  H  R  K  S  S  P  D  V  Q  G  R  *  I  C  P  S  S  G  F  L  Y  R  C  S  F  F  G  *  N  K  L  P  K  D  R  S  S  Q  *  S  C  C  L  F  P  Q  T  S  R  F  Q  K   : G  S  W  F  S  L  L  V  G  S  L  Y  L  K  I  Q  G  L  G  *  V  A  *  D  L  N  *  F  A  H  H  E  V  N  I  V  L  D  S  S  R  G  V  A  R  I  L  V  K  G  V  R  T  S  K  R :   Q  Q  M  N  A  H  W  C  L  N  L  I  K  N  T  Q  A  R  *  C  C  A  L  K  P  *  S  P  S  R  S  T  I  Q  H  F  L  M  S  T  G  *  L  N  * </second_frame>
            <third_frame>   N  S  P  N  F  S  D  S  S  Y  C  Y  S  I  K  F  L  R  I  R  V  H  T  N  M  A  S  S  A  A  I  N  N  I  E  R  A  H  Q  M  Y  R  E  G  R  Y  A  Q  A  L  G  F  Y  T  D  A  L  S  L  A  K  T  N  S  Q  K  I  A  L  H  S  N  R  A  A  C  F  L  K  L  H  D  F  K  K  :  V  L  G  F  P  C  W  L  A  L  Y  I  S  K  Y  K  D  L  D  E  *  L  K  I  L  T  D  L  L  I  M  K  *  I  L  Y  W  T  L  A  E  A  *  P  G  F  *  *  R  V  F  E  L  R  R   : G  S  R  *  M  H  I  G  A  *  T  *  S  K  T  H  R  R  A  D  V  A  R  S  N  L  S  H  P  Q  G  V  P  F  S  T  F  *  C  Q  Q  V  N  *  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0174J08.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12293" stop="12037"/>
                    <exon start="11656" stop="11581"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIPPIFQIQVTVIRLNFFELGYIQTWPHQLPSTTSKELTRCTGKVDMPKLWVFIPMLFLWLKQTPKRSLFTVIVLLVSSNFTISKRFLVFLVGWLFISQNTRTWMSSLRS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0174J08.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12291" stop="12037"/>
                    <exon start="11656" stop="11594"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSPNFSDSSYCYSIKFLRIRVHTNMASSAAINNIERAHQMYREGRYAQALGFYTDALSLAKTNSQKIALHSNRAACFLKLHDFKKVLGFPCWLALYISKYKDLDE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="12090" e_stop="11491"/>
            <exon e_start="9642" e_stop="9437"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.770" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12090" e_stop="11491" e_length="600"/>
          </exon>
          <intron i_serial="1" don_prob="0.770" acc_prob="1.000">
            <gDNA_intron_boundary i_start="11490" i_stop="9643" i_length="1848"/>
          </intron>
          <exon e_serial="2" e_score="0.981">
            <gDNA_exon_boundary e_start="9642" e_stop="9437" e_length="206"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12090" stop="11491"/>
              <exon start="9642" stop="9437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322851" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTCTTCACAGTAATCGTGCTGCTTGTTTCCTCAAACTTCACGATTTCAAAAAGGTTACATCTTTATTTATTGAATTACATCAAACATTTGTTCAATTCGACCTCTCAAACTTTGAACTTGATGCTTTGACCTTTCTGATTTCGAATGGCTAGTTGATATATAGTGCTGTGACACCATCACAGTGGTAACAAATGGTTGCTCTTTTGGAAATTCAATCTTTTACTCAATTCAGCATGGGTTATAAAGTTTTCTCTTTTCAGCAATAACATGGTTCAAATGAAGCAAAAAGGGTTATCCTTTTTCCTTTTTAAACTTAATGTTTACCCTACTTGCTTGGACTTTAAGTTCCAAATCAATAAATCAACTTTCTTTTTCTTGGATTGGATACCCCCATAGATAGCAAATCATTGAATCATCTTTTTTGGTTTTCTAGGTTCTTGGTTTTCCTTGTTGGTTGGCTCTTTATATCTCAAAATACAAGGACTTGGATGAGTAGCTTAAGATCTTAACTGATTTGCTCATCATGAAGTGAATATTGTATTGGACTCTAGCAGAGGCGTAGCCAGGATTTTAGTGAAGGGTGTTCGAACTTCGAAGAG : GCAGCAGATGAATGCACATTGGTGCTTGAACTTGATCAAAAACACACAGGCGCGCTGATGTTGCGCGCTCAAACCTTAGTCACCCTCAAGGAGTACCATTCAGCACTTTTTGATGTCAACAGGTTAATTGAATTGAATCCATCATCAGAAGTGTATCAAAACCTCCATGCCCGTCTGAAGACACAATTGGTAGTCATTCTGCCTTT</gDNA_template>
            <first_frame> A  L  H  S  N  R  A  A  C  F  L  K  L  H  D  F  K  K  V  T  S  L  F  I  E  L  H  Q  T  F  V  Q  F  D  L  S  N  F  E  L  D  A  L  T  F  L  I  S  N  G  *  L  I  Y  S  A  V  T  P  S  Q  W  *  Q  M  V  A  L  L  E  I  Q  S  F  T  Q  F  S  M  G  Y  K  V  F  S  F  Q  Q  *  H  G  S  N  E  A  K  R  V  I  L  F  P  F  *  T  *  C  L  P  Y  L  L  G  L  *  V  P  N  Q  *  I  N  F  L  F  L  G  L  D  T  P  I  D  S  K  S  L  N  H  L  F  W  F  S  R  F  L  V  F  L  V  G  W  L  F  I  S  Q  N  T  R  T  W  M  S  S  L  R  S  *  L  I  C  S  S  *  S  E  Y  C  I  G  L  *  Q  R  R  S  Q  D  F  S  E  G  C  S  N  F  E  E  :  A  A  D  E  C  T  L  V  L  E  L  D  Q  K  H  T  G  A  L  M  L  R  A  Q  T  L  V  T  L  K  E  Y  H  S  A  L  F  D  V  N  R  L  I  E  L  N  P  S  S  E  V  Y  Q  N  L  H  A  R  L  K  T  Q  L  V  V  I  L  P   </first_frame>
            <second_frame>  L  F  T  V  I  V  L  L  V  S  S  N  F  T  I  S  K  R  L  H  L  Y  L  L  N  Y  I  K  H  L  F  N  S  T  S  Q  T  L  N  L  M  L  *  P  F  *  F  R  M  A  S  *  Y  I  V  L  *  H  H  H  S  G  N  K  W  L  L  F  W  K  F  N  L  L  L  N  S  A  W  V  I  K  F  S  L  F  S  N  N  M  V  Q  M  K  Q  K  G  L  S  F  F  L  F  K  L  N  V  Y  P  T  C  L  D  F  K  F  Q  I  N  K  S  T  F  F  F  L  D  W  I  P  P  *  I  A  N  H  *  I  I  F  F  G  F  L  G  S  W  F  S  L  L  V  G  S  L  Y  L  K  I  Q  G  L  G  *  V  A  *  D  L  N  *  F  A  H  H  E  V  N  I  V  L  D  S  S  R  G  V  A  R  I  L  V  K  G  V  R  T  S  K  R :   Q  Q  M  N  A  H  W  C  L  N  L  I  K  N  T  Q  A  R  *  C  C  A  L  K  P  *  S  P  S  R  S  T  I  Q  H  F  L  M  S  T  G  *  L  N  *  I  H  H  Q  K  C  I  K  T  S  M  P  V  *  R  H  N  W  *  S  F  C  L  </second_frame>
            <third_frame>   S  S  Q  *  S  C  C  L  F  P  Q  T  S  R  F  Q  K  G  Y  I  F  I  Y  *  I  T  S  N  I  C  S  I  R  P  L  K  L  *  T  *  C  F  D  L  S  D  F  E  W  L  V  D  I  *  C  C  D  T  I  T  V  V  T  N  G  C  S  F  G  N  S  I  F  Y  S  I  Q  H  G  L  *  S  F  L  F  S  A  I  T  W  F  K  *  S  K  K  G  Y  P  F  S  F  L  N  L  M  F  T  L  L  A  W  T  L  S  S  K  S  I  N  Q  L  S  F  S  W  I  G  Y  P  H  R  *  Q  I  I  E  S  S  F  L  V  F  *  V  L  G  F  P  C  W  L  A  L  Y  I  S  K  Y  K  D  L  D  E  *  L  K  I  L  T  D  L  L  I  M  K  *  I  L  Y  W  T  L  A  E  A  *  P  G  F  *  *  R  V  F  E  L  R  R   : G  S  R  *  M  H  I  G  A  *  T  *  S  K  T  H  R  R  A  D  V  A  R  S  N  L  S  H  P  Q  G  V  P  F  S  T  F  *  C  Q  Q  V  N  *  I  E  S  I  I  R  S  V  S  K  P  P  C  P  S  E  D  T  I  G  S  H  S  A  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0174J08.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11538" stop="11491"/>
                    <exon start="9642" stop="9439"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QRRSQDFSEGCSNFEEAADECTLVLELDQKHTGALMLRAQTLVTLKEYHSALFDVNRLIELNPSSEVYQNLHARLKTQLVVILP</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0174J08.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11918" stop="11694"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HHHSGNKWLLFWKFNLLLNSAWVIKFSLFSNNMVQMKQKGLSFFLFKLNVYPTCLDFKFQINKSTFFFLDWIPP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="13419" PGL_stop="14116"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13419" e_stop="14116"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="13419" e_stop="14116" e_length="698"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13419" stop="14116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342406" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACAGTTCAATCATGGAATCCAAGCCCTCACACCCACTTCACCAAATTGCAGAAACCCCAACTCACAAGTTGCTTCTCAAACAATGGCTGAAAGAAGAAGAACTCATCCTCAACAGAATCGCTACCAAAGAAACCCAAATCGATTCCGTCCGCAATGAAATCACTCAGCTCTACTGCATTTTCTTCCTGTTCCATTCGATTTCCCTTATGCTTTTATTCAGTGCTTCCTCCAAATGGGCCTCGAGAACTGGGCTCTGCCACCGTTCATGGATCCCGTCAATCTGTTCTCTCCTCTGTTCTATGGGTATTATTTGGGCTGTTAGGTACAAGACGGATACAGAGAGTCACTTAGAGAAACTGTTGGAGAGAGAGAAAGAGGATGGGAAATTACTGGCAAAGTGTGTGGAGGAGCTGAAGAGAAAAGGGGTGGAATTTGATTTGTTGAAGGAAGTTGATGCTCTTAGGAGGGCTAAGAGCTTGAGGGTTGAAGCTAAGGTGGTTCGAAAATGGTCAGCTAGAGACTTTGTGTCTCTGTTTTTCTTCTCTGTTACTTGCCTGGTACTCGCTTTAACCAGGACCATTTTGTGTAATTGATACTTACTACAACTGAATCGGAAAATTAATTGTGGGGAAGTTACTCTTCTGCTTTTTATATTTTAATTTGATTCTTATTTGGCAATGAATTTTTAACATTTTGG</gDNA_template>
            <first_frame> N  S  S  I  M  E  S  K  P  S  H  P  L  H  Q  I  A  E  T  P  T  H  K  L  L  L  K  Q  W  L  K  E  E  E  L  I  L  N  R  I  A  T  K  E  T  Q  I  D  S  V  R  N  E  I  T  Q  L  Y  C  I  F  F  L  F  H  S  I  S  L  M  L  L  F  S  A  S  S  K  W  A  S  R  T  G  L  C  H  R  S  W  I  P  S  I  C  S  L  L  C  S  M  G  I  I  W  A  V  R  Y  K  T  D  T  E  S  H  L  E  K  L  L  E  R  E  K  E  D  G  K  L  L  A  K  C  V  E  E  L  K  R  K  G  V  E  F  D  L  L  K  E  V  D  A  L  R  R  A  K  S  L  R  V  E  A  K  V  V  R  K  W  S  A  R  D  F  V  S  L  F  F  F  S  V  T  C  L  V  L  A  L  T  R  T  I  L  C  N  *  Y  L  L  Q  L  N  R  K  I  N  C  G  E  V  T  L  L  L  F  I  F  *  F  D  S  Y  L  A  M  N  F  *  H  F   </first_frame>
            <second_frame>  T  V  Q  S  W  N  P  S  P  H  T  H  F  T  K  L  Q  K  P  Q  L  T  S  C  F  S  N  N  G  *  K  K  K  N  S  S  S  T  E  S  L  P  K  K  P  K  S  I  P  S  A  M  K  S  L  S  S  T  A  F  S  S  C  S  I  R  F  P  L  C  F  Y  S  V  L  P  P  N  G  P  R  E  L  G  S  A  T  V  H  G  S  R  Q  S  V  L  S  S  V  L  W  V  L  F  G  L  L  G  T  R  R  I  Q  R  V  T  *  R  N  C  W  R  E  R  K  R  M  G  N  Y  W  Q  S  V  W  R  S  *  R  E  K  G  W  N  L  I  C  *  R  K  L  M  L  L  G  G  L  R  A  *  G  L  K  L  R  W  F  E  N  G  Q  L  E  T  L  C  L  C  F  S  S  L  L  L  A  W  Y  S  L  *  P  G  P  F  C  V  I  D  T  Y  Y  N  *  I  G  K  L  I  V  G  K  L  L  F  C  F  L  Y  F  N  L  I  L  I  W  Q  *  I  F  N  I  L  </second_frame>
            <third_frame>   Q  F  N  H  G  I  Q  A  L  T  P  T  S  P  N  C  R  N  P  N  S  Q  V  A  S  Q  T  M  A  E  R  R  R  T  H  P  Q  Q  N  R  Y  Q  R  N  P  N  R  F  R  P  Q  *  N  H  S  A  L  L  H  F  L  P  V  P  F  D  F  P  Y  A  F  I  Q  C  F  L  Q  M  G  L  E  N  W  A  L  P  P  F  M  D  P  V  N  L  F  S  P  L  F  Y  G  Y  Y  L  G  C  *  V  Q  D  G  Y  R  E  S  L  R  E  T  V  G  E  R  E  R  G  W  E  I  T  G  K  V  C  G  G  A  E  E  K  R  G  G  I  *  F  V  E  G  S  *  C  S  *  E  G  *  E  L  E  G  *  S  *  G  G  S  K  M  V  S  *  R  L  C  V  S  V  F  L  L  C  Y  L  P  G  T  R  F  N  Q  D  H  F  V  *  L  I  L  T  T  T  E  S  E  N  *  L  W  G  S  Y  S  S  A  F  Y  I  L  I  *  F  L  F  G  N  E  F  L  T  F  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0174J08.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13419" stop="14012"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSSIMESKPSHPLHQIAETPTHKLLLKQWLKEEELILNRIATKETQIDSVRNEITQLYCIFFLFHSISLMLLFSASSKWASRTGLCHRSWIPSICSLLCSMGIIWAVRYKTDTESHLEKLLEREKEDGKLLAKCVEELKRKGVEFDLLKEVDALRRAKSLRVEAKVVRKWSARDFVSLFFFSVTCLVLALTRTILCN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="15671" PGL_stop="14218"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15671" e_stop="15484"/>
            <exon e_start="15366" e_stop="15135"/>
            <exon e_start="15045" e_stop="14895"/>
            <exon e_start="14678" e_stop="14218"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.882" acc_prob="0.022" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.992" e_score="0.991"/>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="0.993"/>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15671" e_stop="15484" e_length="188"/>
          </exon>
          <intron i_serial="1" don_prob="0.882" acc_prob="0.022">
            <gDNA_intron_boundary i_start="15483" i_stop="15367" i_length="117"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="15366" e_stop="15135" e_length="232"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.992">
            <gDNA_intron_boundary i_start="15134" i_stop="15046" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="15045" e_stop="14895" e_length="151"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14894" i_stop="14679" i_length="216"/>
          </intron>
          <exon e_serial="4" e_score="0.963">
            <gDNA_exon_boundary e_start="14678" e_stop="14218" e_length="461"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15671" stop="15484"/>
              <exon start="15366" stop="15135"/>
              <exon start="15045" stop="14895"/>
              <exon start="14678" stop="14218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331967" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTTGCTGTTAAACAACTGTCTGTGGCATCACACCAAGGAAAGAGTCAGTTTGTGGCCGAGATTGCTACTATATCAGCTGTACAACACCGTAATCTTGTGAAGCTCTATGGTTGCTGCATCGAGGGAGACAGGCGATTACTTGTTTATGAGTACCTTGAAAACAAGAGTCTTGATCAAGCATTATTTG : AGAAAGGATCTCTATATCTTGATTGGCCAACACGCTTCCAGATATGCTTGGGAGTAGCAAAGGGTCTAGCGTATCTTCATGAGGAATCTCGAGTCCGTATTGTCCATCGAGATGTGAAGGCCAGTAATATCCTGCTTGATGCAGATCTAAACCCAAAAATTTCAGACTTTGGATTGGCAAAACTTTATGATGACAAACAGACGCATATAAACACTCGTGTTGCTGGCACAAT : AGGGTATCTTGCACCAGAATATGCCATGCGCGGACATCTGACAGAGAAGGCTGATGTGTTTGGCTTTGGAGTTGTAGCTCTAGAAATTGTCAGTGGTAGAACAAATTCTGATGAGAGCTTGGAAGAAGACAAGATCTACCTTCTTGAGTGG : GCTTGGCAGCTTCATGAGAACAAGCGCGAAACTGAGCTAGTGGATGCAAATTTATCTGAATTTGATGTAGAAGAAGTGAAAAAAGTAATAGGGATAGCTCTACTATGCACTCAAACATCCCCAGGATTACGACCCTCAATGTCCCGTGCAATAGCAATGCTTACAGGAGATGCTGAGGTTGCGGCTGTGACTTCGAGACCTGGATACCTGACTGACTGGAAATTCAAAGATACAACAACCTTCATGAGTGGTCATTCTTCGCAAATGCCAGATTTATCAGTGGGTACAAGTAGAGCCCCAACTACAGGTTATTCACCATCAGGTCAGGACACACCAATGCTCAGTGACATCATTGGAGAGGGTAGATGAAATCTTGCATTTTTCAGTCAGAGATAAACTTTTACCCTTTTGTTTGCATGTATTATAACCATTTGTGTATAGCTTAGATTCTTTCTGCATGT</gDNA_template>
            <first_frame> C  C  C  *  T  T  V  C  G  I  T  P  R  K  E  S  V  C  G  R  D  C  Y  Y  I  S  C  T  T  P  *  S  C  E  A  L  W  L  L  H  R  G  R  Q  A  I  T  C  L  *  V  P  *  K  Q  E  S  *  S  S  I  I  * :   E  R  I  S  I  S  *  L  A  N  T  L  P  D  M  L  G  S  S  K  G  S  S  V  S  S  *  G  I  S  S  P  Y  C  P  S  R  C  E  G  Q  *  Y  P  A  *  C  R  S  K  P  K  N  F  R  L  W  I  G  K  T  L  *  *  Q  T  D  A  Y  K  H  S  C  C  W  H  N  :  R  V  S  C  T  R  I  C  H  A  R  T  S  D  R  E  G  *  C  V  W  L  W  S  C  S  S  R  N  C  Q  W  *  N  K  F  *  *  E  L  G  R  R  Q  D  L  P  S  *  V   : G  L  A  A  S  *  E  Q  A  R  N  *  A  S  G  C  K  F  I  *  I  *  C  R  R  S  E  K  S  N  R  D  S  S  T  M  H  S  N  I  P  R  I  T  T  L  N  V  P  C  N  S  N  A  Y  R  R  C  *  G  C  G  C  D  F  E  T  W  I  P  D  *  L  E  I  Q  R  Y  N  N  L  H  E  W  S  F  F  A  N  A  R  F  I  S  G  Y  K  *  S  P  N  Y  R  L  F  T  I  R  S  G  H  T  N  A  Q  *  H  H  W  R  G  *  M  K  S  C  I  F  Q  S  E  I  N  F  Y  P  F  V  C  M  Y  Y  N  H  L  C  I  A  *  I  L  S  A  C </first_frame>
            <second_frame>  V  A  V  K  Q  L  S  V  A  S  H  Q  G  K  S  Q  F  V  A  E  I  A  T  I  S  A  V  Q  H  R  N  L  V  K  L  Y  G  C  C  I  E  G  D  R  R  L  L  V  Y  E  Y  L  E  N  K  S  L  D  Q  A  L  F   : E  K  G  S  L  Y  L  D  W  P  T  R  F  Q  I  C  L  G  V  A  K  G  L  A  Y  L  H  E  E  S  R  V  R  I  V  H  R  D  V  K  A  S  N  I  L  L  D  A  D  L  N  P  K  I  S  D  F  G  L  A  K  L  Y  D  D  K  Q  T  H  I  N  T  R  V  A  G  T  I :   G  Y  L  A  P  E  Y  A  M  R  G  H  L  T  E  K  A  D  V  F  G  F  G  V  V  A  L  E  I  V  S  G  R  T  N  S  D  E  S  L  E  E  D  K  I  Y  L  L  E  W  :  A  W  Q  L  H  E  N  K  R  E  T  E  L  V  D  A  N  L  S  E  F  D  V  E  E  V  K  K  V  I  G  I  A  L  L  C  T  Q  T  S  P  G  L  R  P  S  M  S  R  A  I  A  M  L  T  G  D  A  E  V  A  A  V  T  S  R  P  G  Y  L  T  D  W  K  F  K  D  T  T  T  F  M  S  G  H  S  S  Q  M  P  D  L  S  V  G  T  S  R  A  P  T  T  G  Y  S  P  S  G  Q  D  T  P  M  L  S  D  I  I  G  E  G  R  *  N  L  A  F  F  S  Q  R  *  T  F  T  L  L  F  A  C  I  I  T  I  C  V  *  L  R  F  F  L  H   </second_frame>
            <third_frame>   L  L  L  N  N  C  L  W  H  H  T  K  E  R  V  S  L  W  P  R  L  L  L  Y  Q  L  Y  N  T  V  I  L  *  S  S  M  V  A  A  S  R  E  T  G  D  Y  L  F  M  S  T  L  K  T  R  V  L  I  K  H  Y  L  :  R  K  D  L  Y  I  L  I  G  Q  H  A  S  R  Y  A  W  E  *  Q  R  V  *  R  I  F  M  R  N  L  E  S  V  L  S  I  E  M  *  R  P  V  I  S  C  L  M  Q  I  *  T  Q  K  F  Q  T  L  D  W  Q  N  F  M  M  T  N  R  R  I  *  T  L  V  L  L  A  Q   : *  G  I  L  H  Q  N  M  P  C  A  D  I  *  Q  R  R  L  M  C  L  A  L  E  L  *  L  *  K  L  S  V  V  E  Q  I  L  M  R  A  W  K  K  T  R  S  T  F  L  S  G :   L  G  S  F  M  R  T  S  A  K  L  S  *  W  M  Q  I  Y  L  N  L  M  *  K  K  *  K  K  *  *  G  *  L  Y  Y  A  L  K  H  P  Q  D  Y  D  P  Q  C  P  V  Q  *  Q  C  L  Q  E  M  L  R  L  R  L  *  L  R  D  L  D  T  *  L  T  G  N  S  K  I  Q  Q  P  S  *  V  V  I  L  R  K  C  Q  I  Y  Q  W  V  Q  V  E  P  Q  L  Q  V  I  H  H  Q  V  R  T  H  Q  C  S  V  T  S  L  E  R  V  D  E  I  L  H  F  S  V  R  D  K  L  L  P  F  C  L  H  V  L  *  P  F  V  Y  S  L  D  S  F  C  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0174J08.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15670" stop="15484"/>
                    <exon start="15366" stop="15135"/>
                    <exon start="15045" stop="14895"/>
                    <exon start="14678" stop="14310"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>936</number_coding_nucleotides>
                  <number_encoded_amino_acids>312</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VAVKQLSVASHQGKSQFVAEIATISAVQHRNLVKLYGCCIEGDRRLLVYEYLENKSLDQALFEKGSLYLDWPTRFQICLGVAKGLAYLHEESRVRIVHRDVKASNILLDADLNPKISDFGLAKLYDDKQTHINTRVAGTIGYLAPEYAMRGHLTEKADVFGFGVVALEIVSGRTNSDESLEEDKIYLLEWAWQLHENKRETELVDANLSEFDVEEVKKVIGIALLCTQTSPGLRPSMSRAIAMLTGDAEVAAVTSRPGYLTDWKFKDTTTFMSGHSSQMPDLSVGTSRAPTTGYSPSGQDTPMLSDIIGEGR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 12 chains have been computed
$ 
$ memory statistics:
$ 21056 bytes spliced alignments in total
$ 10 spliced alignments have been stored
$ 2105 bytes was the average size of a spliced alignment
$ 11192 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2238 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 14 backtrace matrices have been allocated
$ 
$ date finished: 2008-04-18 00:09:37
-->
