<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-03 17:48:00"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689617" ref_strand="+" ref_description="SGN-E689617 [LH_Ea01F23]">
      <seq>tcacggatttactccagactcttacacctattcttcaccgatcagaggattatgcttggaaaagatgttggtggctgctgtcgatgtattctacatgatggaagaaaatggatataggcctgatattgacaatttcaatgcgcttgtgcttggactatgcaaatccaaaagaacagacttgtcattaaaggtatttgaggacatgatcagcaaaggttatatgcctaatgagataacatataccattctagtcgaaggcatcatccatgaagatcacaaggagcttgcatcagtagtcctaagggaactgcaccggaaagaagtaataagtagaaatactgttgaaagacttgctatgcggtatgagcttgaagatatggcagtatgctgatctttcacaaaaccaatggcgtgtggtcacaggatgagaaactaacaaaggttcttcattagcaaatgctaaatacaccaaataaacaaagttattctcatgctgtatgtcagatggtaactttacacaactaataaaccttcgggataattggttttcagatatggtagttgattcatagtaggcttcaaataggtgagtggtgaaacttgtcaattctcactagcttactcttgctactcaattgctgttacaaaaaaagttgtatatcctaaatcctttatctaaagctttctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="1" stop="1082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119" g_stop="775" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="657" r_length="657" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E689617" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119" e_stop="775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACGGATTTACTCCAGACTCTTACACCTATTCTTCATTGATCAGAGGATTATGCTTGGAAAAGATGTTGGTGGCTGCTGTCGATGTATTCTACATGATGGAAGAAAATGGATATAGGCCTGATGTTGACAATTTCAATGCGCTTGTGCTTGGACTATGCAAATCCAAAAGAACAGACTTGTCATTAAAGGTATTTGAGGACATGATCAGCAAAGGTTATATGCCTAATGAGATAACATATACCATTATAGTCGAAGGCATCATCCATGAAGATCACAAGGAGCTTGCATCAGTAGTCCTAAGGGAACTGCACCGGAAAGAAGTAATAAGTAGAAATACTGTTGAAAGACTTGCTATGCAATATGAGCTTGAAGATATGGCAGTATGCTGATCTTTCACAAAACCAATGGCTTGTGGTCACAGGATGAGAAACTAACAAAGGTTCTTCATTAGCAAATGCTAAATACACCAAATAAACAAAGTTATTCTCATGCTGTATGTCAGATGGTAACTTTACACAACTAATAAACCTTCGGGATAATTGGTTTTCAGATATGGTAGTTGATTCATAGTAGGCTTCAAATAGGTGAGTGGTGAAACTTGTCAATTCTCACTAGCTTACTCTTGCTACTCAATTGCTGTTACAAAAAAAGTTGT</genome_strand>
        <mrna_strand>TCACGGATTTACTCCAGACTCTTACACCTATTCTTCACCGATCAGAGGATTATGCTTGGAAAAGATGTTGGTGGCTGCTGTCGATGTATTCTACATGATGGAAGAAAATGGATATAGGCCTGATATTGACAATTTCAATGCGCTTGTGCTTGGACTATGCAAATCCAAAAGAACAGACTTGTCATTAAAGGTATTTGAGGACATGATCAGCAAAGGTTATATGCCTAATGAGATAACATATACCATTCTAGTCGAAGGCATCATCCATGAAGATCACAAGGAGCTTGCATCAGTAGTCCTAAGGGAACTGCACCGGAAAGAAGTAATAAGTAGAAATACTGTTGAAAGACTTGCTATGCGGTATGAGCTTGAAGATATGGCAGTATGCTGATCTTTCACAAAACCAATGGCGTGTGGTCACAGGATGAGAAACTAACAAAGGTTCTTCATTAGCAAATGCTAAATACACCAAATAAACAAAGTTATTCTCATGCTGTATGTCAGATGGTAACTTTACACAACTAATAAACCTTCGGGATAATTGGTTTTCAGATATGGTAGTTGATTCATAGTAGGCTTCAAATAGGTGAGTGGTGAAACTTGTCAATTCTCACTAGCTTACTCTTGCTACTCAATTGCTGTTACAAAAAAAGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E693457" ref_strand="+" ref_description="SGN-E693457 [LH_Ea01F23](-)">
      <seq>cacggatttactccagactcttacacctattcttcattgatcagaggattatgccttggaaaagatgttggtggctgctgtcgatgtattctacatgatggaagaaaatggatataggcctgatattgacaatttcaatgcgcttgtgcttggactatgcaaatccaaaagaacagacttgtcattaaaggtatttgaggacatgatcagcaaaggttatatgcctaatgagataacatataccattctagtcgaaggcatcatccatgaagatcacaaggagcttgcatcagtagtcctaagggaactgcaccggaaagaagtaataagtagaaatactgttgaaagacttgctatgcaatatgagcttgaagatatggcagtatgctgatctttcacaaaaccaatggcgtgtggtcacaggatgagaaactaacaaaggttcttcattagcaaatgctaaatacaccaaataaacaaagttattctcatgctgtatgtcagacccccccctcacacaactaataaaccttcgggataattggttttcagatatggtagttgattcatagtaggcttcaaataggtgagtggtgaaacttgtcaattctcactagcttactgttgctactcaattgctgttacaaaaaaagtggntctatataggtcctttatctaaagctttctttctaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="1" stop="1081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120" g_stop="775" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="657" r_length="657" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="692" polyA_stop="710"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E693457" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120" e_stop="775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGGATTTACTCCAGACTCTTACACCTATTCTTCATTGATCAGAGGATTATG-CTTGGAAAAGATGTTGGTGGCTGCTGTCGATGTATTCTACATGATGGAAGAAAATGGATATAGGCCTGATGTTGACAATTTCAATGCGCTTGTGCTTGGACTATGCAAATCCAAAAGAACAGACTTGTCATTAAAGGTATTTGAGGACATGATCAGCAAAGGTTATATGCCTAATGAGATAACATATACCATTATAGTCGAAGGCATCATCCATGAAGATCACAAGGAGCTTGCATCAGTAGTCCTAAGGGAACTGCACCGGAAAGAAGTAATAAGTAGAAATACTGTTGAAAGACTTGCTATGCAATATGAGCTTGAAGATATGGCAGTATGCTGATCTTTCACAAAACCAATGGCTTGTGGTCACAGGATGAGAAACTAACAAAGGTTCTTCATTAGCAAATGCTAAATACACCAAATAAACAAAGTTATTCTCATGCTGTATGTCAGATGGTAACTTTACACAACTAATAAACCTTCGGGATAATTGGTTTTCAGATATGGTAGTTGATTCATAGTAGGCTTCAAATAGGTGAGTGGTGAAACTTGTCAATTCTCACTAGCTTACTCTTGCTACTCAATTGCTGTTACAAAAAAAGTTGT</genome_strand>
        <mrna_strand>CACGGATTTACTCCAGACTCTTACACCTATTCTTCATTGATCAGAGGATTATGCCTTGGAAAAGATGTTGGTGGCTGCTGTCGATGTATTCTACATGATGGAAGAAAATGGATATAGGCCTGATATTGACAATTTCAATGCGCTTGTGCTTGGACTATGCAAATCCAAAAGAACAGACTTGTCATTAAAGGTATTTGAGGACATGATCAGCAAAGGTTATATGCCTAATGAGATAACATATACCATTCTAGTCGAAGGCATCATCCATGAAGATCACAAGGAGCTTGCATCAGTAGTCCTAAGGGAACTGCACCGGAAAGAAGTAATAAGTAGAAATACTGTTGAAAGACTTGCTATGCAATATGAGCTTGAAGATATGGCAGTATGCTGATCTTTCACAAAACCAATGGCGTGTGGTCACAGGATGAGAAACTAACAAAGGTTCTTCATTAGCAAATGCTAAATACACCAAATAAACAAAGTTATTCTCATGCTGTATGTCAGACCCCCCCCTCACACAACTAATAAACCTTCGGGATAATTGGTTTTCAGATATGGTAGTTGATTCATAGTAGGCTTCAAATAGGTGAGTGGTGAAACTTGTCAATTCTCACTAGCTTACTGTTGCTACTCAATTGCTGTTACAAAAAAAGTGGN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E595215" ref_strand="+" ref_description="SGN-E595215 [38483]">
      <seq>gctgatctttcacaaaaacaacggcgtgtggtcacaggatgagaaactaacaaaggttattcatcagcaaatgctaaatacaccaaatcaacaaaattattttcatgctgtatgtcagatgggaactttacacaactaataaaccttcgggataattggttttcagatagggtagttgattcatagtcggctttaaataggtgagtggtgaaacttgtcgattctcactagcttgctcttgctactcaattgctgttacaaaaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="205" stop="1070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="505" g_stop="770" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E595215" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>266</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E595215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="505" e_stop="770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGATCTTTCACAAAACCAATGGCTTGTGGTCACAGGATGAGAAACTAACAAAGGTTCTTCATTAGCAAATGCTAAATACACCAAATAAACAAAGTTATTCTCATGCTGTATGTCAGATGGTAACTTTACACAACTAATAAACCTTCGGGATAATTGGTTTTCAGATATGGTAGTTGATTCATAGTAGGCTTCAAATAGGTGAGTGGTGAAACTTGTCAATTCTCACTAGCTTACTCTTGCTACTCAATTGCTGTTACAAAAAAA</genome_strand>
        <mrna_strand>GCTGATCTTTCACAAAAACAACGGCGTGTGGTCACAGGATGAGAAACTAACAAAGGTTATTCATCAGCAAATGCTAAATACACCAAATCAACAAAATTATTTTCATGCTGTATGTCAGATGGGAACTTTACACAACTAATAAACCTTCGGGATAATTGGTTTTCAGATAGGGTAGTTGATTCATAGTCGGCTTTAAATAGGTGAGTGGTGAAACTTGTCGATTCTCACTAGCTTGCTCTTGCTACTCAATTGCTGTTACAAAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351030" ref_strand="+" ref_description="SGN-E351030 [cTOS-6-A16]">
      <seq>gagcaagcatgagagcaaagtggaagaagaagcgtatgaggagactgaaaaggaagcgcagaaagatgagacagagatctaagtagagcagcagcaggggtccagatgcctactgtggtttcttggttgaaactgctgctttttataatcgctgtccatctctgtggcagctccaaagaatggaggttgtccgttgtttgaagctgtgcattagttaatttactatgttctatggaggagcttagttttagttttaagcattggtagtaagaatgttggtttgtgttggatatatgtgagttatattgaatgttctctttcaagctgacgtttttaagaggatttctatttgtttggggttacatttcatttgaataaattttggctttgaacgttattacttcatgtgatgttctgatgatgtacaagtgtgaagtgaaaccctggttggttttgatctagtatgatcattcttgtgcttgcttggttcaagaatatcaaggcgtattgaatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="3466" stop="1225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3166" g_stop="3147" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3146" i_stop="2019" i_length="1128">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2018" g_stop="1537" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="502" r_length="482" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="515" polyA_stop="524"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E351030" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3166" e_stop="3147"/>
          <exon e_start="2018" e_stop="1537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAAGCATGAGAGCAAAGGTCTGTTTTCTGATCCTAAGTGCATTTCGTGTTATCTTTTTCGGTTTTGTAAGCTCGAAATTGAAAGTTCTGTTGCTACTCAGTTATGTTTTTGCTTAAACTTCATATTTGCAATTGTTATTGTGTTTGCTATGATGGATTAAAGGATCTATTGACTATTGTTTTTGTTGAATTTGTTCTTACACATCGTATTTTCAGTTGCATTATCTGATTACTTGAGGATAACTAGTGTGTCATGCTTGGAGATTTATGACACATGATTCATGGTGATCGTAATTGTTGGAGATGATTTGTAGACTTTGAGAAACTATAAACCATATAAGGTAGAATGGAAGCTCACAAGAGGATATATTGTTTAAGATCCTCGTATAGGAATGCTTGAAGTGGGAGGTTTACATACTTTGATATGTACCACACTTGCTCAAATACTCCTTTACAATTTTAATCTACAACAATAGTGATTATAGGGAGTAGGGATACAAGTTAGCTATCAAACATCACCTAAGCTATTTGGGCAATTTGTCGAACACAGTACGAGTCCAAGGTCAATTACGATGGTATATTCCCACAATCTGAGAATAGTAGCTATGGTGCTTTGGTTCAAATTGTGTTTGGGGTGTGAAATTTATTTTGCCCCAGCGGACCCATTTTCTAAACTTGCATAGTTTTCTTGATCTTAACCAAAAAGGTTGGGTAAGGTGTTATCTTATGCATTGAATTTTATATTAATATGCACAGTTGCTTTACAAGTGTACTTGTTTTTACCTTATCAAACACCTATCAATAAAATATTCTAGTATTTGTTTGAAGTTGGACCGTGCTGGGTCTTTCGAGATCTAGTGTTGGGGTAGAAATCTTCTGAAATCTTGTGTCTTCCCTGTCTTCCATGGAATATATCTTTTCCATATGAATGTTCTGAAAAGTGTGGCCTTTAAGATTTAGAGGAAAGATAAGACAACGTGATATGTTTTTTAGCTTCTTTAGATGACAACAAAGTGTTTGTGTCAAAACTCAGTTGGCACTGCAGTATGCCATCAACCTGTTTTGCGAACAGGGAGTTTGCTAAGGTTTTGTTTTCTTGTGCCATTGTAGTGGTACTAGCGACTAATGTTTTTATTTTAAATGCAGTGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTGAATAAATTTTGGCTTTGAACGTTATTACTTCATGTGATGTTCTGATGATGTACAAGTGTGAAGTGAAACCCTGGTTGGTTTTGATCTAGTATGATCATTCTTGTGCTTGCTTGGTTCAAGAATATCAAG</genome_strand>
        <mrna_strand>GAGCAAGCATGAGAGCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTGAATAAATTTTGGCTTTGAACGTTATTACTTCATGTGATGTTCTGATGATGTACAAGTGTGAAGTGAAACCCTGGTTGGTTTTGATCTAGTATGATCATTCTTGTGCTTGCTTGGTTCAAGAATATCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351154" ref_strand="+" ref_description="SGN-E351154 [cTOS-6-A19]">
      <seq>gagcaagcatgagagcaaagtggaagaagaagcgtatgaggagactgaaaaggaagcgcagaaagatgagacagagatctaagtagagcagcagcaggggtccagatgcctactgtggtttcttggttgaaactgctgctttttataatcgctgtccatctctgtggcagctccaaagaatggaggttgtccgttgtttgaagctgtgcattagttaatttactatgttctatggaggagcttagttttagttttaagcattggtagtaagaatgttggtttgtgttggatatatgtgagttatattgaatgttctctttcaagctgacgtttttaagaggatttctatttgtttggggttacatttcatttgaataaattttggctttgaacgttattacttcatgtgatgttctgatgatgtacaagtgtgaagtgaaaccctggttggttttgatctagtatgatcattcttgtgcttgcttggttcaagaatatcaaggcgtattgaatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="3466" stop="1225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3166" g_stop="3147" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3146" i_stop="2019" i_length="1128">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2018" g_stop="1537" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="502" r_length="482" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="515" polyA_stop="524"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E351154" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3166" e_stop="3147"/>
          <exon e_start="2018" e_stop="1537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAAGCATGAGAGCAAAGGTCTGTTTTCTGATCCTAAGTGCATTTCGTGTTATCTTTTTCGGTTTTGTAAGCTCGAAATTGAAAGTTCTGTTGCTACTCAGTTATGTTTTTGCTTAAACTTCATATTTGCAATTGTTATTGTGTTTGCTATGATGGATTAAAGGATCTATTGACTATTGTTTTTGTTGAATTTGTTCTTACACATCGTATTTTCAGTTGCATTATCTGATTACTTGAGGATAACTAGTGTGTCATGCTTGGAGATTTATGACACATGATTCATGGTGATCGTAATTGTTGGAGATGATTTGTAGACTTTGAGAAACTATAAACCATATAAGGTAGAATGGAAGCTCACAAGAGGATATATTGTTTAAGATCCTCGTATAGGAATGCTTGAAGTGGGAGGTTTACATACTTTGATATGTACCACACTTGCTCAAATACTCCTTTACAATTTTAATCTACAACAATAGTGATTATAGGGAGTAGGGATACAAGTTAGCTATCAAACATCACCTAAGCTATTTGGGCAATTTGTCGAACACAGTACGAGTCCAAGGTCAATTACGATGGTATATTCCCACAATCTGAGAATAGTAGCTATGGTGCTTTGGTTCAAATTGTGTTTGGGGTGTGAAATTTATTTTGCCCCAGCGGACCCATTTTCTAAACTTGCATAGTTTTCTTGATCTTAACCAAAAAGGTTGGGTAAGGTGTTATCTTATGCATTGAATTTTATATTAATATGCACAGTTGCTTTACAAGTGTACTTGTTTTTACCTTATCAAACACCTATCAATAAAATATTCTAGTATTTGTTTGAAGTTGGACCGTGCTGGGTCTTTCGAGATCTAGTGTTGGGGTAGAAATCTTCTGAAATCTTGTGTCTTCCCTGTCTTCCATGGAATATATCTTTTCCATATGAATGTTCTGAAAAGTGTGGCCTTTAAGATTTAGAGGAAAGATAAGACAACGTGATATGTTTTTTAGCTTCTTTAGATGACAACAAAGTGTTTGTGTCAAAACTCAGTTGGCACTGCAGTATGCCATCAACCTGTTTTGCGAACAGGGAGTTTGCTAAGGTTTTGTTTTCTTGTGCCATTGTAGTGGTACTAGCGACTAATGTTTTTATTTTAAATGCAGTGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTGAATAAATTTTGGCTTTGAACGTTATTACTTCATGTGATGTTCTGATGATGTACAAGTGTGAAGTGAAACCCTGGTTGGTTTTGATCTAGTATGATCATTCTTGTGCTTGCTTGGTTCAAGAATATCAAG</genome_strand>
        <mrna_strand>GAGCAAGCATGAGAGCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTGAATAAATTTTGGCTTTGAACGTTATTACTTCATGTGATGTTCTGATGATGTACAAGTGTGAAGTGAAACCCTGGTTGGTTTTGATCTAGTATGATCATTCTTGTGCTTGCTTGGTTCAAGAATATCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338668" ref_strand="+" ref_description="SGN-E338668 [cTOE-15-F12]">
      <seq>gagggtaaagagagagtcggcggtgaattttgagcaagccatgagagccaaagtggaagaagaagccgtatgaggagactgaaaaggaagccgccagaaagatgagacagagatctaagtagagcagcagcaggggtccagatgcctacctgtggtttcttggttgaaactgctgctttttataatcgctgtccatctctgtggcagctccaaagaatggaggttgtccgttgtttgaagctgtgcattagttaatttacctatgttctatggaggagcttagttttagttttaagcattggtagtaagaatgttggtttgtgttggatatatgtgagttatattgaatgttctctttcaagctgacgtttttaagaggatttctatttgtttggggttaccatttcatttgaataaattttggctttgaacgttattacttcatgtgatgttctgatgatgtacaagtgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="3496" stop="1305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3199" g_stop="3147" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.887"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3146" i_stop="2019" i_length="1128">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.991" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2018" g_stop="1605" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="473" r_length="420" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E338668" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3199" e_stop="3147"/>
          <exon e_start="2018" e_stop="1605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGAGGTAAAGAGAGAGTCGGCGGTGAATTTTGAGCAAG-CATGAGAG-CAAAGGTCTGTTTTCTGATCCTAAGTGCATTTCGTGTTATCTTTTTCGGTTTTGTAAGCTCGAAATTGAAAGTTCTGTTGCTACTCAGTTATGTTTTTGCTTAAACTTCATATTTGCAATTGTTATTGTGTTTGCTATGATGGATTAAAGGATCTATTGACTATTGTTTTTGTTGAATTTGTTCTTACACATCGTATTTTCAGTTGCATTATCTGATTACTTGAGGATAACTAGTGTGTCATGCTTGGAGATTTATGACACATGATTCATGGTGATCGTAATTGTTGGAGATGATTTGTAGACTTTGAGAAACTATAAACCATATAAGGTAGAATGGAAGCTCACAAGAGGATATATTGTTTAAGATCCTCGTATAGGAATGCTTGAAGTGGGAGGTTTACATACTTTGATATGTACCACACTTGCTCAAATACTCCTTTACAATTTTAATCTACAACAATAGTGATTATAGGGAGTAGGGATACAAGTTAGCTATCAAACATCACCTAAGCTATTTGGGCAATTTGTCGAACACAGTACGAGTCCAAGGTCAATTACGATGGTATATTCCCACAATCTGAGAATAGTAGCTATGGTGCTTTGGTTCAAATTGTGTTTGGGGTGTGAAATTTATTTTGCCCCAGCGGACCCATTTTCTAAACTTGCATAGTTTTCTTGATCTTAACCAAAAAGGTTGGGTAAGGTGTTATCTTATGCATTGAATTTTATATTAATATGCACAGTTGCTTTACAAGTGTACTTGTTTTTACCTTATCAAACACCTATCAATAAAATATTCTAGTATTTGTTTGAAGTTGGACCGTGCTGGGTCTTTCGAGATCTAGTGTTGGGGTAGAAATCTTCTGAAATCTTGTGTCTTCCCTGTCTTCCATGGAATATATCTTTTCCATATGAATGTTCTGAAAAGTGTGGCCTTTAAGATTTAGAGGAAAGATAAGACAACGTGATATGTTTTTTAGCTTCTTTAGATGACAACAAAGTGTTTGTGTCAAAACTCAGTTGGCACTGCAGTATGCCATCAACCTGTTTTGCGAACAGGGAGTTTGCTAAGGTTTTGTTTTCTTGTGCCATTGTAGTGGTACTAGCGACTAATGTTTTTATTTTAAATGCAGTGGAAGAAGAAG-CGTATGAGGAGACTGAAAAGGAAG-CG-CAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTA-CTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTA-CTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTA-CATTTCATTTGAATAAATTTTGGCTTTGAACGTTATTACTTCATGTGATGTTCTGATGATGTACAAGTGTGA</genome_strand>
        <mrna_strand>GA-G-GGTAAAGAGAGAGTCGGCGGTGAATTTTGAGCAAGCCATGAGAGCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGAAGAAGCCGTATGAGGAGACTGAAAAGGAAGCCGCCAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACCTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACCTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACCATTTCATTTGAATAAATTTTGGCTTTGAACGTTATTACTTCATGTGATGTTCTGATGATGTACAAGTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339640" ref_strand="+" ref_description="SGN-E339640 [cTOE-16-P12]">
      <seq>gaagacgaggtaaagagagagtcggcggtgaattttgagcaagcatgagagcaaagtggaagaagaagcgtatgaggagactgaaaaggaagcgcagaaagatgagacagagatctaagtagagcagcagcaggggtccagatgcctactgtggtttcttggttgaaactgctgctttttataatcgctgtccatctctgtggcagctccaaagaatggaggttgtccgttgtttgaagctgtgcattagttaatttactatgttctatggaggagcttagttttagttttaagcattggtagtaagaatgttggtttgtgttggatatatgtgagttatattgaatgttctctttcaagctgacgtttttaagaggatttctatttgtttggggttacatttcatttgaataaattttggctttgaacgttattacttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="3502" stop="1334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3202" g_stop="3147" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3146" i_stop="2019" i_length="1128">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2018" g_stop="1635" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="440" r_length="384" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="441" polyA_stop="451"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E339640" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3202" e_stop="3147"/>
          <exon e_start="2018" e_stop="1635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGACGAGGTAAAGAGAGAGTCGGCGGTGAATTTTGAGCAAGCATGAGAGCAAAGGTCTGTTTTCTGATCCTAAGTGCATTTCGTGTTATCTTTTTCGGTTTTGTAAGCTCGAAATTGAAAGTTCTGTTGCTACTCAGTTATGTTTTTGCTTAAACTTCATATTTGCAATTGTTATTGTGTTTGCTATGATGGATTAAAGGATCTATTGACTATTGTTTTTGTTGAATTTGTTCTTACACATCGTATTTTCAGTTGCATTATCTGATTACTTGAGGATAACTAGTGTGTCATGCTTGGAGATTTATGACACATGATTCATGGTGATCGTAATTGTTGGAGATGATTTGTAGACTTTGAGAAACTATAAACCATATAAGGTAGAATGGAAGCTCACAAGAGGATATATTGTTTAAGATCCTCGTATAGGAATGCTTGAAGTGGGAGGTTTACATACTTTGATATGTACCACACTTGCTCAAATACTCCTTTACAATTTTAATCTACAACAATAGTGATTATAGGGAGTAGGGATACAAGTTAGCTATCAAACATCACCTAAGCTATTTGGGCAATTTGTCGAACACAGTACGAGTCCAAGGTCAATTACGATGGTATATTCCCACAATCTGAGAATAGTAGCTATGGTGCTTTGGTTCAAATTGTGTTTGGGGTGTGAAATTTATTTTGCCCCAGCGGACCCATTTTCTAAACTTGCATAGTTTTCTTGATCTTAACCAAAAAGGTTGGGTAAGGTGTTATCTTATGCATTGAATTTTATATTAATATGCACAGTTGCTTTACAAGTGTACTTGTTTTTACCTTATCAAACACCTATCAATAAAATATTCTAGTATTTGTTTGAAGTTGGACCGTGCTGGGTCTTTCGAGATCTAGTGTTGGGGTAGAAATCTTCTGAAATCTTGTGTCTTCCCTGTCTTCCATGGAATATATCTTTTCCATATGAATGTTCTGAAAAGTGTGGCCTTTAAGATTTAGAGGAAAGATAAGACAACGTGATATGTTTTTTAGCTTCTTTAGATGACAACAAAGTGTTTGTGTCAAAACTCAGTTGGCACTGCAGTATGCCATCAACCTGTTTTGCGAACAGGGAGTTTGCTAAGGTTTTGTTTTCTTGTGCCATTGTAGTGGTACTAGCGACTAATGTTTTTATTTTAAATGCAGTGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTGAATAAATTTTGGCTTTGAACGTTATTACTTC</genome_strand>
        <mrna_strand>GAAGACGAGGTAAAGAGAGAGTCGGCGGTGAATTTTGAGCAAGCATGAGAGCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTGAATAAATTTTGGCTTTGAACGTTATTACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734195" ref_strand="+" ref_description="SGN-E734195 [LB12AB06]">
      <seq>cggaagacgaggtaaagagagagtcggcggtgaattttgagcaagcatgagagcaaagtggaagaagaagcgtatgaggagactgaaaaggaagcgcagaaagatgagacagagatctaagtagagcagcagcaggggtccagatgcctactgtggtttcttggttgaaactgctgctttttataatcgctgtccatctctgtggcagctccaaagaatggaggttgtccgttgtttgaagctgtgcattagttaatttactatgttctatggaggagcttagttttagttttaagcattggtagtaagaatgttggtttgtgttggatatatgtgagttatattgaatgttctctttcaagctgacgtttttaagaggatttctatttgtttggggttacatttcatttgaataaattttggctttgaacgttaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="3504" stop="1342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3204" g_stop="3147" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3146" i_stop="2019" i_length="1128">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2018" g_stop="1643" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="434" r_length="376" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="435" polyA_stop="462"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E734195" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3204" e_stop="3147"/>
          <exon e_start="2018" e_stop="1643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAAGACGAGGTAAAGAGAGAGTCGGCGGTGAATTTTGAGCAAGCATGAGAGCAAAGGTCTGTTTTCTGATCCTAAGTGCATTTCGTGTTATCTTTTTCGGTTTTGTAAGCTCGAAATTGAAAGTTCTGTTGCTACTCAGTTATGTTTTTGCTTAAACTTCATATTTGCAATTGTTATTGTGTTTGCTATGATGGATTAAAGGATCTATTGACTATTGTTTTTGTTGAATTTGTTCTTACACATCGTATTTTCAGTTGCATTATCTGATTACTTGAGGATAACTAGTGTGTCATGCTTGGAGATTTATGACACATGATTCATGGTGATCGTAATTGTTGGAGATGATTTGTAGACTTTGAGAAACTATAAACCATATAAGGTAGAATGGAAGCTCACAAGAGGATATATTGTTTAAGATCCTCGTATAGGAATGCTTGAAGTGGGAGGTTTACATACTTTGATATGTACCACACTTGCTCAAATACTCCTTTACAATTTTAATCTACAACAATAGTGATTATAGGGAGTAGGGATACAAGTTAGCTATCAAACATCACCTAAGCTATTTGGGCAATTTGTCGAACACAGTACGAGTCCAAGGTCAATTACGATGGTATATTCCCACAATCTGAGAATAGTAGCTATGGTGCTTTGGTTCAAATTGTGTTTGGGGTGTGAAATTTATTTTGCCCCAGCGGACCCATTTTCTAAACTTGCATAGTTTTCTTGATCTTAACCAAAAAGGTTGGGTAAGGTGTTATCTTATGCATTGAATTTTATATTAATATGCACAGTTGCTTTACAAGTGTACTTGTTTTTACCTTATCAAACACCTATCAATAAAATATTCTAGTATTTGTTTGAAGTTGGACCGTGCTGGGTCTTTCGAGATCTAGTGTTGGGGTAGAAATCTTCTGAAATCTTGTGTCTTCCCTGTCTTCCATGGAATATATCTTTTCCATATGAATGTTCTGAAAAGTGTGGCCTTTAAGATTTAGAGGAAAGATAAGACAACGTGATATGTTTTTTAGCTTCTTTAGATGACAACAAAGTGTTTGTGTCAAAACTCAGTTGGCACTGCAGTATGCCATCAACCTGTTTTGCGAACAGGGAGTTTGCTAAGGTTTTGTTTTCTTGTGCCATTGTAGTGGTACTAGCGACTAATGTTTTTATTTTAAATGCAGTGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTGAATAAATTTTGGCTTTGAACGTT</genome_strand>
        <mrna_strand>CGGAAGACGAGGTAAAGAGAGAGTCGGCGGTGAATTTTGAGCAAGCATGAGAGCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTGAATAAATTTTGGCTTTGAACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716767" ref_strand="+" ref_description="SGN-E716767 [FB17DH07]">
      <seq>cgagtacgaggtaaagagagagtcggcggtgaattttgagcaagcatgagagcaaagtggaagaagaagcgtatgaggagactgaaaaggaagcgcagaaagatgagacagagatctaagtagagcagcagcaggggtccagatgcctactgtggtttcttggttgaaactgctgctttttataatcgctgtccatctctgtggcagctccaaagaatggaggttgtccgttgtttgaagctgtgcattagttaatttactatgttctatggaggagcttagttttagttttaagcattggtagtaagaatgttggtttgtgttggatatatgtgagttatattgaatgttctctttcaagctgacgtttttaagaggatttctatttgtttggggttacatttcatttgaataaattttggctttgaacgttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="3500" stop="1342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3203" g_stop="3147" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3146" i_stop="2019" i_length="1128">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2018" g_stop="1643" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="433" r_length="376" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="434" polyA_stop="447"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E716767" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3203" e_stop="3147"/>
          <exon e_start="2018" e_stop="1643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGACGAGGTAAAGAGAGAGTCGGCGGTGAATTTTGAGCAAGCATGAGAGCAAAGGTCTGTTTTCTGATCCTAAGTGCATTTCGTGTTATCTTTTTCGGTTTTGTAAGCTCGAAATTGAAAGTTCTGTTGCTACTCAGTTATGTTTTTGCTTAAACTTCATATTTGCAATTGTTATTGTGTTTGCTATGATGGATTAAAGGATCTATTGACTATTGTTTTTGTTGAATTTGTTCTTACACATCGTATTTTCAGTTGCATTATCTGATTACTTGAGGATAACTAGTGTGTCATGCTTGGAGATTTATGACACATGATTCATGGTGATCGTAATTGTTGGAGATGATTTGTAGACTTTGAGAAACTATAAACCATATAAGGTAGAATGGAAGCTCACAAGAGGATATATTGTTTAAGATCCTCGTATAGGAATGCTTGAAGTGGGAGGTTTACATACTTTGATATGTACCACACTTGCTCAAATACTCCTTTACAATTTTAATCTACAACAATAGTGATTATAGGGAGTAGGGATACAAGTTAGCTATCAAACATCACCTAAGCTATTTGGGCAATTTGTCGAACACAGTACGAGTCCAAGGTCAATTACGATGGTATATTCCCACAATCTGAGAATAGTAGCTATGGTGCTTTGGTTCAAATTGTGTTTGGGGTGTGAAATTTATTTTGCCCCAGCGGACCCATTTTCTAAACTTGCATAGTTTTCTTGATCTTAACCAAAAAGGTTGGGTAAGGTGTTATCTTATGCATTGAATTTTATATTAATATGCACAGTTGCTTTACAAGTGTACTTGTTTTTACCTTATCAAACACCTATCAATAAAATATTCTAGTATTTGTTTGAAGTTGGACCGTGCTGGGTCTTTCGAGATCTAGTGTTGGGGTAGAAATCTTCTGAAATCTTGTGTCTTCCCTGTCTTCCATGGAATATATCTTTTCCATATGAATGTTCTGAAAAGTGTGGCCTTTAAGATTTAGAGGAAAGATAAGACAACGTGATATGTTTTTTAGCTTCTTTAGATGACAACAAAGTGTTTGTGTCAAAACTCAGTTGGCACTGCAGTATGCCATCAACCTGTTTTGCGAACAGGGAGTTTGCTAAGGTTTTGTTTTCTTGTGCCATTGTAGTGGTACTAGCGACTAATGTTTTTATTTTAAATGCAGTGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTGAATAAATTTTGGCTTTGAACGTT</genome_strand>
        <mrna_strand>CGAGTACGAGGTAAAGAGAGAGTCGGCGGTGAATTTTGAGCAAGCATGAGAGCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTGAATAAATTTTGGCTTTGAACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337581" ref_strand="+" ref_description="SGN-E337581 [cTOE-11-D1]">
      <seq>acgaggtaaagagagagtcggcggtgaattttgagcaagcatgagagcaaagtggaagaagaagcgtatgaggagactgaaaaggaagcgcagaaagatgagacagagatctaagtagagcagcagcaggggtccagatgcctactgtggtttcttggttgaaactgctgctttttataatcgctgtccatctctgtggcagctccaaagaatggaggttgtccgttgtttgaagctgtgcattagttaatttactatgttctatggaggagcttagttttagttttaagcattggtagtaagaatgttggtttgtgttggatatatgtgagttatattgaatgttctctttcaagctgacgtttttaagaggatttctatttgtttggggttacatttcatttgaataaatttttggctttgaacgtttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="3498" stop="1339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3198" g_stop="3147" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3146" i_stop="2019" i_length="1128">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2018" g_stop="1643" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="429" r_length="377" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="431" polyA_stop="440"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E337581" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3198" e_stop="3147"/>
          <exon e_start="2018" e_stop="1643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAGGTAAAGAGAGAGTCGGCGGTGAATTTTGAGCAAGCATGAGAGCAAAGGTCTGTTTTCTGATCCTAAGTGCATTTCGTGTTATCTTTTTCGGTTTTGTAAGCTCGAAATTGAAAGTTCTGTTGCTACTCAGTTATGTTTTTGCTTAAACTTCATATTTGCAATTGTTATTGTGTTTGCTATGATGGATTAAAGGATCTATTGACTATTGTTTTTGTTGAATTTGTTCTTACACATCGTATTTTCAGTTGCATTATCTGATTACTTGAGGATAACTAGTGTGTCATGCTTGGAGATTTATGACACATGATTCATGGTGATCGTAATTGTTGGAGATGATTTGTAGACTTTGAGAAACTATAAACCATATAAGGTAGAATGGAAGCTCACAAGAGGATATATTGTTTAAGATCCTCGTATAGGAATGCTTGAAGTGGGAGGTTTACATACTTTGATATGTACCACACTTGCTCAAATACTCCTTTACAATTTTAATCTACAACAATAGTGATTATAGGGAGTAGGGATACAAGTTAGCTATCAAACATCACCTAAGCTATTTGGGCAATTTGTCGAACACAGTACGAGTCCAAGGTCAATTACGATGGTATATTCCCACAATCTGAGAATAGTAGCTATGGTGCTTTGGTTCAAATTGTGTTTGGGGTGTGAAATTTATTTTGCCCCAGCGGACCCATTTTCTAAACTTGCATAGTTTTCTTGATCTTAACCAAAAAGGTTGGGTAAGGTGTTATCTTATGCATTGAATTTTATATTAATATGCACAGTTGCTTTACAAGTGTACTTGTTTTTACCTTATCAAACACCTATCAATAAAATATTCTAGTATTTGTTTGAAGTTGGACCGTGCTGGGTCTTTCGAGATCTAGTGTTGGGGTAGAAATCTTCTGAAATCTTGTGTCTTCCCTGTCTTCCATGGAATATATCTTTTCCATATGAATGTTCTGAAAAGTGTGGCCTTTAAGATTTAGAGGAAAGATAAGACAACGTGATATGTTTTTTAGCTTCTTTAGATGACAACAAAGTGTTTGTGTCAAAACTCAGTTGGCACTGCAGTATGCCATCAACCTGTTTTGCGAACAGGGAGTTTGCTAAGGTTTTGTTTTCTTGTGCCATTGTAGTGGTACTAGCGACTAATGTTTTTATTTTAAATGCAGTGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTGAATAAA-TTTTGGCTTTGAACGTT</genome_strand>
        <mrna_strand>ACGAGGTAAAGAGAGAGTCGGCGGTGAATTTTGAGCAAGCATGAGAGCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTGAATAAATTTTTGGCTTTGAACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302689" ref_strand="+" ref_description="SGN-E302689 [cLEY-1-E19](-)">
      <seq>ctgtggcagctccaaagaatggaggttgtccgttgtttgaagctgtgcattagttaatttactatgttctatggaggagcttagttttagttttaagcattggtagtaagaatgttggtttgtgttggatatatgtgagttatattgaatgttctctttcaagctgacgtttttaagaggatttctatttgtttggggttacatttcatttgaataaattttggctttgaacgttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="2177" stop="1342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1877" g_stop="1643" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="236" polyA_stop="248"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E302689" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>235</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1877" e_stop="1643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTGAATAAATTTTGGCTTTGAACGTT</genome_strand>
        <mrna_strand>CTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTGAATAAATTTTGGCTTTGAACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302688" ref_strand="+" ref_description="SGN-E302688 [cLEY-1-E19]">
      <seq>tgtggcagctccaaagaatggaggttgtccgttgtttgaagctgtgcattagttaatttactatgttctatggaggagcttagttttagttttaagcattggtagtaagaatgttggtttgtgttggatatatgtgagttatattgaatgttctctttcaagctgacgtttttaagaggatttctatttgtttggggttacatttcatttgaataaattttggctttgaacgttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="2176" stop="1342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1876" g_stop="1643" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="235" polyA_stop="248"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E302688" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>234</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1876" e_stop="1643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTGAATAAATTTTGGCTTTGAACGTT</genome_strand>
        <mrna_strand>TGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTGAATAAATTTTGGCTTTGAACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350258" ref_strand="+" ref_description="SGN-E350258 [cTOS-4-N3]">
      <seq>gacgaggtaaagagagagtcggcggtgaattttgagcaagcatgagagcaaagtggaagaagaagcgtatgaggagactgaaaaggaagcgcagaaagatgagacagagatctaagtagagcagcagcaggggtccagatgcctactgtggtttcttggttgaaactgctgctttttataatcgctgtccatctctgtggcagctccaaagaatggaggttgtccgttgtttgaagctgtgcattagttaatttactatgttctatggaggagcttagttttagttttaagcattggtagtaagaatgttggtttgtgttggatatatgtgagttatattgaatgttctctttcaagctgacgtttttaagaggatttctatttgtttggggttacatttcatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="3499" stop="1366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3199" g_stop="3147" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3146" i_stop="2019" i_length="1128">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2018" g_stop="1666" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="406" r_length="353" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E350258" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3199" e_stop="3147"/>
          <exon e_start="2018" e_stop="1666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGAGGTAAAGAGAGAGTCGGCGGTGAATTTTGAGCAAGCATGAGAGCAAAGGTCTGTTTTCTGATCCTAAGTGCATTTCGTGTTATCTTTTTCGGTTTTGTAAGCTCGAAATTGAAAGTTCTGTTGCTACTCAGTTATGTTTTTGCTTAAACTTCATATTTGCAATTGTTATTGTGTTTGCTATGATGGATTAAAGGATCTATTGACTATTGTTTTTGTTGAATTTGTTCTTACACATCGTATTTTCAGTTGCATTATCTGATTACTTGAGGATAACTAGTGTGTCATGCTTGGAGATTTATGACACATGATTCATGGTGATCGTAATTGTTGGAGATGATTTGTAGACTTTGAGAAACTATAAACCATATAAGGTAGAATGGAAGCTCACAAGAGGATATATTGTTTAAGATCCTCGTATAGGAATGCTTGAAGTGGGAGGTTTACATACTTTGATATGTACCACACTTGCTCAAATACTCCTTTACAATTTTAATCTACAACAATAGTGATTATAGGGAGTAGGGATACAAGTTAGCTATCAAACATCACCTAAGCTATTTGGGCAATTTGTCGAACACAGTACGAGTCCAAGGTCAATTACGATGGTATATTCCCACAATCTGAGAATAGTAGCTATGGTGCTTTGGTTCAAATTGTGTTTGGGGTGTGAAATTTATTTTGCCCCAGCGGACCCATTTTCTAAACTTGCATAGTTTTCTTGATCTTAACCAAAAAGGTTGGGTAAGGTGTTATCTTATGCATTGAATTTTATATTAATATGCACAGTTGCTTTACAAGTGTACTTGTTTTTACCTTATCAAACACCTATCAATAAAATATTCTAGTATTTGTTTGAAGTTGGACCGTGCTGGGTCTTTCGAGATCTAGTGTTGGGGTAGAAATCTTCTGAAATCTTGTGTCTTCCCTGTCTTCCATGGAATATATCTTTTCCATATGAATGTTCTGAAAAGTGTGGCCTTTAAGATTTAGAGGAAAGATAAGACAACGTGATATGTTTTTTAGCTTCTTTAGATGACAACAAAGTGTTTGTGTCAAAACTCAGTTGGCACTGCAGTATGCCATCAACCTGTTTTGCGAACAGGGAGTTTGCTAAGGTTTTGTTTTCTTGTGCCATTGTAGTGGTACTAGCGACTAATGTTTTTATTTTAAATGCAGTGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTG</genome_strand>
        <mrna_strand>GACGAGGTAAAGAGAGAGTCGGCGGTGAATTTTGAGCAAGCATGAGAGCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303524" ref_strand="+" ref_description="SGN-E303524 [cLEX-2-N17]">
      <seq>gaagacgaggtaaagagagagtcggcggtgaattttgagcaagcatgagagcaaagtggaagaagaagcgtatgaggagactgaaaaggaagcgcagaaagatgagaccagagatctaagtagagcagcagcaggggtccagatgcctactgtggtttcttggttgaaactgctgctttttataatcgctgtccatctctgtggcagctccaaagaatggaggttgtccgttgtttgaagctgtgcattagttaatttactatgttctatggaggagcttagttttagttttaagcattggtagtaagaatgttggtttgtgttggatatatgtgagttatattgaatgttctctttcaagctgacgtttttaagaggaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="3502" stop="1397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3202" g_stop="3147" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3146" i_stop="2019" i_length="1128">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2018" g_stop="1698" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="378" r_length="322" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="379" polyA_stop="393"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E303524" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3202" e_stop="3147"/>
          <exon e_start="2018" e_stop="1698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGACGAGGTAAAGAGAGAGTCGGCGGTGAATTTTGAGCAAGCATGAGAGCAAAGGTCTGTTTTCTGATCCTAAGTGCATTTCGTGTTATCTTTTTCGGTTTTGTAAGCTCGAAATTGAAAGTTCTGTTGCTACTCAGTTATGTTTTTGCTTAAACTTCATATTTGCAATTGTTATTGTGTTTGCTATGATGGATTAAAGGATCTATTGACTATTGTTTTTGTTGAATTTGTTCTTACACATCGTATTTTCAGTTGCATTATCTGATTACTTGAGGATAACTAGTGTGTCATGCTTGGAGATTTATGACACATGATTCATGGTGATCGTAATTGTTGGAGATGATTTGTAGACTTTGAGAAACTATAAACCATATAAGGTAGAATGGAAGCTCACAAGAGGATATATTGTTTAAGATCCTCGTATAGGAATGCTTGAAGTGGGAGGTTTACATACTTTGATATGTACCACACTTGCTCAAATACTCCTTTACAATTTTAATCTACAACAATAGTGATTATAGGGAGTAGGGATACAAGTTAGCTATCAAACATCACCTAAGCTATTTGGGCAATTTGTCGAACACAGTACGAGTCCAAGGTCAATTACGATGGTATATTCCCACAATCTGAGAATAGTAGCTATGGTGCTTTGGTTCAAATTGTGTTTGGGGTGTGAAATTTATTTTGCCCCAGCGGACCCATTTTCTAAACTTGCATAGTTTTCTTGATCTTAACCAAAAAGGTTGGGTAAGGTGTTATCTTATGCATTGAATTTTATATTAATATGCACAGTTGCTTTACAAGTGTACTTGTTTTTACCTTATCAAACACCTATCAATAAAATATTCTAGTATTTGTTTGAAGTTGGACCGTGCTGGGTCTTTCGAGATCTAGTGTTGGGGTAGAAATCTTCTGAAATCTTGTGTCTTCCCTGTCTTCCATGGAATATATCTTTTCCATATGAATGTTCTGAAAAGTGTGGCCTTTAAGATTTAGAGGAAAGATAAGACAACGTGATATGTTTTTTAGCTTCTTTAGATGACAACAAAGTGTTTGTGTCAAAACTCAGTTGGCACTGCAGTATGCCATCAACCTGTTTTGCGAACAGGGAGTTTGCTAAGGTTTTGTTTTCTTGTGCCATTGTAGTGGTACTAGCGACTAATGTTTTTATTTTAAATGCAGTGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGA-CAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGG</genome_strand>
        <mrna_strand>GAAGACGAGGTAAAGAGAGAGTCGGCGGTGAATTTTGAGCAAGCATGAGAGCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACCAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283667" ref_strand="+" ref_description="SGN-E283667 [cLES-1-D16]">
      <seq>agagagtcggcggtgaattttgagcaagcatgagagcaaagtggaagaagaagcgtatgaggagactgaaaaggaagcgcagaaagatgagacagagatctaagtatagcagcagcaagggtccagatgcctactgtgggttcttggctgaaactgctgctttctataatcgctgtccatctctgtggcagctccaaagaatggaggttgtccgttgtttgaagctgtgcattagataatttactatgttctatggaggagcttagacttagctttaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="3487" stop="1479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3187" g_stop="3147" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3146" i_stop="2019" i_length="1128">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2018" g_stop="1779" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="281" r_length="240" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E283667" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>281</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3187" e_stop="3147"/>
          <exon e_start="2018" e_stop="1779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGTCGGCGGTGAATTTTGAGCAAGCATGAGAGCAAAGGTCTGTTTTCTGATCCTAAGTGCATTTCGTGTTATCTTTTTCGGTTTTGTAAGCTCGAAATTGAAAGTTCTGTTGCTACTCAGTTATGTTTTTGCTTAAACTTCATATTTGCAATTGTTATTGTGTTTGCTATGATGGATTAAAGGATCTATTGACTATTGTTTTTGTTGAATTTGTTCTTACACATCGTATTTTCAGTTGCATTATCTGATTACTTGAGGATAACTAGTGTGTCATGCTTGGAGATTTATGACACATGATTCATGGTGATCGTAATTGTTGGAGATGATTTGTAGACTTTGAGAAACTATAAACCATATAAGGTAGAATGGAAGCTCACAAGAGGATATATTGTTTAAGATCCTCGTATAGGAATGCTTGAAGTGGGAGGTTTACATACTTTGATATGTACCACACTTGCTCAAATACTCCTTTACAATTTTAATCTACAACAATAGTGATTATAGGGAGTAGGGATACAAGTTAGCTATCAAACATCACCTAAGCTATTTGGGCAATTTGTCGAACACAGTACGAGTCCAAGGTCAATTACGATGGTATATTCCCACAATCTGAGAATAGTAGCTATGGTGCTTTGGTTCAAATTGTGTTTGGGGTGTGAAATTTATTTTGCCCCAGCGGACCCATTTTCTAAACTTGCATAGTTTTCTTGATCTTAACCAAAAAGGTTGGGTAAGGTGTTATCTTATGCATTGAATTTTATATTAATATGCACAGTTGCTTTACAAGTGTACTTGTTTTTACCTTATCAAACACCTATCAATAAAATATTCTAGTATTTGTTTGAAGTTGGACCGTGCTGGGTCTTTCGAGATCTAGTGTTGGGGTAGAAATCTTCTGAAATCTTGTGTCTTCCCTGTCTTCCATGGAATATATCTTTTCCATATGAATGTTCTGAAAAGTGTGGCCTTTAAGATTTAGAGGAAAGATAAGACAACGTGATATGTTTTTTAGCTTCTTTAGATGACAACAAAGTGTTTGTGTCAAAACTCAGTTGGCACTGCAGTATGCCATCAACCTGTTTTGCGAACAGGGAGTTTGCTAAGGTTTTGTTTTCTTGTGCCATTGTAGTGGTACTAGCGACTAATGTTTTTATTTTAAATGCAGTGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCA</genome_strand>
        <mrna_strand>AGAGAGTCGGCGGTGAATTTTGAGCAAGCATGAGAGCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTATAGCAGCAGCAAGGGTCCAGATGCCTACTGTGGGTTCTTGGCTGAAACTGCTGCTTTCTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGATAATTTACTATGTTCTATGGAGGAGCTTAGACTTAGCTTTAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276867" ref_strand="+" ref_description="SGN-E276867 [cLEN-14-L1]">
      <seq>tgacgagtaccgggaaatacaatgtcgaacgaagccccagcaaaaccaccgtgcgacacaccggagcatgactcagccggcgtcaacggctttgacatcaacaacgacacttcaagtactgccttagcaaagggcctttccactataatatcttctctaatccgggaatttgatgatagtgctgccgccacctctcgtagtcaagatcaactctcttccaccctcgatcgtctcactggagagcttgacaagctgctggaagatgccccattgccttttatcatgcagcatgctgccagaatttctggtgttaggaaaagaattacatcgttgaactcacttttgaagtctatacagaggcgtcttgataatatcgaccacacattatctgctggtttgttacatgagaagtcctcaggggatggtgggcgagaccatgagaatcataagtcttcattgaagagttcatgatcaaaatccaggagaagattcaaatgtccttcgcagtgcccgtagaaatctccttctgattgcaagcatttggaactgattcagccttgtggtgtaaaaggtagtctgatgcatgaggttataacacactgcgttctgaaaagatgttcttttacctgtcaaaaaattgcatggtttcagctctgtgccatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="4780" stop="8591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5080" g_stop="5320" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5321" i_stop="6618" i_length="1298">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6619" g_stop="6783" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="406" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6784" i_stop="7070" i_length="287">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7071" g_stop="7128" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="464" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7129" i_stop="8090" i_length="962">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8091" g_stop="8291" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="665" r_length="201" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E276867" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5080" e_stop="5320"/>
          <exon e_start="6619" e_stop="6783"/>
          <exon e_start="7071" e_stop="7128"/>
          <exon e_start="8091" e_stop="8291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACGAGTACCGGGAAATACAATGTCGAACGAAGCCCCAGCAAAACCACCGTGCGACACACCGGAGCATGACTCAGCCGGCGTCAACGGCTTTGACATCAACAACGACACTTCAAGTACTGCCTTAGCAAAGGGCCTTTCCACTATAATATCTTCTCTAATCCGGGAATTTGATGATAGTGCTGCCGCCACCTCTCGTAGTCAAGATCAACTCTCTTCCACCCTCGATCGTCTCACTGGAGGTAGAACTCATCACCTTCTTCTAATTGTATTCAATGGACTTAATTTCGACATTTATTTTTGATGCTCTGTTTAATTGGATTTAGGGATCCATTTACTGTTTTACATTTCATTTTTGTTACCAATTGTTATTGAATAGTTTAAAGTGGGAAGCTTTGACAAGAGGGGCTTGTTCGGATGATAAGCACCCTCCACCTTTAATCCTAGAGTTGTGGGTTCAGTTACCAGTGGAGCAAAACGGGTGGGAGCTCCAGGGGATGGATTATAAAAATAAAAAGTAGGAAGATTTGCAAAAAGAATTGTTCTATTGACGGCACATCTTAGAAAGAGTCCAAATAATCTTTACTAAGATGGTTGTTCCAACTGAATAGCTGAATGGTTGAGTCACAGGAGTAACAATCCAGCTGCAATATGATGTGCAGGCTTACCCAAACAGATGTGGTTGCAATGTATCAAGTTGTTCAATGGATTGGTCGAGATGAGCATAAGATGCCGTCACACCATTGTCATGTTAGAGAAATCACCAGGGTTGGGGCGTGTGTGTGTGCTGGGAGGCAATAGCTGTATATGTAATTTTGTTTGCACCTTCTAGTTTCATTTGCAGCTCACCATTGTTTCCTTGAGAATGAATACAATCACTTTCTTCTTCTTTTTTGCTGTTGCTATATGATATATTATAAGTTCTCATTGAACCATAAAGCTAAAGGAGAAAAAAAAAAGAAATACACACTGCTCTCGTAGATATTAACAGAAGGCTAATAACATTGTTGGCTGTACAAAGGTCAATCTTTATTCCATACATTTTGAAAAGTCAAATTAACTTAGTGGGCTATATTTCAGCGTGTGAAAAAAAAGAGAGTTTAAGATATCTTGAAATAATATTAACTTGCCACTTTTTTAAAAATAGATATCTTGAAATAACTTTTTGGCTCCTTCCTCTCCCTTTGGTATGTACAGTGAGACTTTTGTGTTCTCTATGTAAAGTAGAGATGTCGTCCGTGCTCCTTTATGCCTGATTATTAGTGGCGACAATTGCATTGGAAAAAGGATGTAAAACTGTATTTCCTTAAGTTTTGTTACTACATGTCGATTGCATCAGACCAATCTAATTGCCATGGGCTAACTAACTATTACATGCTCTACAGATGCAAGAGAAATCACCGTTCTACATAATATCTAAAAGTATTAAAAAGGATATTAGGAATAAAGATCCAGGTTGCTAAGTCTGGTGTTTAATCGAAGATTCTGCTTTTATGTGATTAATTTTCTTGTTCTTTCTTGGTCCTGCTTCTACCTGCAGAGCTTGACAAGCTGCTGGAAGATGCCCCATTGCCTTTTATCATGCAGCATGCTGCCAGAATTTCTGGTGTTAGGAAAAGAATTACATCGTTGAACTCACTTTTGAAGTCTATACAGAGGCGTCTTGATAATATCGACCACACATTATCTGCTGGTTTGTTACATGGTACACTTATTTTTTTCTTGATACATCTTATGTCAAGTTTTTCATGGAAATTCAATTAGGATGTGTGCAGGTTCTTAATACTTTGTACTCCGCTATGAATGCTTTACTTGTGTAATCTTTCAAATAGTTCTGTACATGAATTTGGTATTATGTCCAAGCTGTAGGACATAAAAGTTCAATGGAACAGTAATTCCATAATATATCTTGGAAATTAATTTTTCCACGGGGTATATAGCGTTTTGAAGGAAGCTTATATCCACTAATGCTTTTGTTGTATCTTTTTGCAGAGAAGTCCTCAGGGGATGGTGGGCGAGACCATGAGAATCATAAGTCTTCATTGAAGAGGTAATGCTGTTTCTGGTGTTCGATGAACATATAATTTTCTCACCTGGGATTTACGTGAGTGAGAACATTTACGAGCTGTAGGAGTTTGATTTGTGATATATTTCCTAGTCTCTTGATGCAAAAAGGTAATCGAGGTTCATCGGGTCATATCTACTTATCCCTTAAACATTTGTTAGGATCTAGAACACGAAATTCTAGTGCATTAGTTGATTTTTCTATGAACCTCTTACTTTTTAAAAACAGTTTTCCTCCCCAAGAGGACATCAGAATCTAGTATGATAGACAGACATAGCTGAGCGTCAATAAGCCAGTGATCCACACAGTCTCCGCTTATTTGTACAGTTATGGAAGCAGGAGGAACAGGTTACTTCCACTGTTTGGTGGAGAAAGTTACTGGTAAATCTTGACCTCCCATTCTGAGATGCCTATCTCACTCGATAAAGAAAAAAGAAAAAACACTCCATTCTTATCTTCAGAGCAGTAATTCTAAGTAAATGTCTCAGTAGTTTTGGCCAAGTTGGGAAGTTTAACATGTAAAACAAGACAACGAGGGTCCAAAATAGGAGGCATATCATGCATAATAAGTGATACCCACACCTGGAAGAGATTACAGGTAGAGCCTGCTAACATAAACTTTTTCCAGACATATTTGGAATCAATGATATCTTCTGAGTTCTTACTATCTAACCTTTCCCAGTGTGTGTCAAATGAATTAATTCAGTGTAATCATTTTGTCTTGTGTTTCAATATCTTGGTGCTGCAATTGGATTGCTGAGAAAATCATTTGTAATTTGGAGCATTATTGAAGTGTGTAATATTACTGAAGCATGCAACATGTGATAATCTTTAGATGAGCTAAATCTTTTCGAGGTGTTGCCTTCATAATGTCTAAAAGGAAGTGTATGAGTTTTATGTCATTGACTAGCCTCTAAATCAGTTACTATGTGGTTGTTTTGGGGCAGTTCATGATCAAAATCCAGGAGAAGATTCAAATGTCCTTCGCAGTGCCCGTAGAAATCTCCTTCTGATTGCAAGCATTTGGAACTGATTCAGCCTTGTGGTGTAAAAGGTAGTCTGATGCATGAGGTTATAACACACTGCGTTCTGAAAAGATGTTCTTTTACCTGTCAAAAAATTGCATGGTTTCAGCTCTGTGCCATACT</genome_strand>
        <mrna_strand>TGACGAGTACCGGGAAATACAATGTCGAACGAAGCCCCAGCAAAACCACCGTGCGACACACCGGAGCATGACTCAGCCGGCGTCAACGGCTTTGACATCAACAACGACACTTCAAGTACTGCCTTAGCAAAGGGCCTTTCCACTATAATATCTTCTCTAATCCGGGAATTTGATGATAGTGCTGCCGCCACCTCTCGTAGTCAAGATCAACTCTCTTCCACCCTCGATCGTCTCACTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGACAAGCTGCTGGAAGATGCCCCATTGCCTTTTATCATGCAGCATGCTGCCAGAATTTCTGGTGTTAGGAAAAGAATTACATCGTTGAACTCACTTTTGAAGTCTATACAGAGGCGTCTTGATAATATCGACCACACATTATCTGCTGGTTTGTTACATG...............................................................................................................................................................................................................................................................................................AGAAGTCCTCAGGGGATGGTGGGCGAGACCATGAGAATCATAAGTCTTCATTGAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATGATCAAAATCCAGGAGAAGATTCAAATGTCCTTCGCAGTGCCCGTAGAAATCTCCTTCTGATTGCAAGCATTTGGAACTGATTCAGCCTTGTGGTGTAAAAGGTAGTCTGATGCATGAGGTTATAACACACTGCGTTCTGAAAAGATGTTCTTTTACCTGTCAAAAAATTGCATGGTTTCAGCTCTGTGCCATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274726" ref_strand="+" ref_description="SGN-E274726 [cLEN-13-L1]">
      <seq>tgacgagtaccgggaaatacaatgtcgaacgaagccccagcaaaaccaccgtgcgacacaccggagcatgactcagccggcgtcaacggctttgacatcaacaacgacacttcaagtactgccttagcaaagggcctttccactataatatcttctctaatccgggaatttgatgatagtgctgccgccacctctcgtagtcaagatcaactctcttccaccctcgatcgtctcactggagagcttgacaagctgctggaagatgccccattgccttttatcatgcagcatgctgccagaatttctggtgttaggaaaagaattacatcgttgaactcacttttgaagtctatacagaggcgtcttgataatatcgaccacacattatctgctggtttgttacatgagaagtcctcaggggatggtgggcgagaccatgagaatcataagtcttcattgaagagttcatgatcaaaatccaggagaagattcaaatgtccttcgcagtgcccgtagaaatctccttctgattgcaagcatttggaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="4780" stop="8475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5080" g_stop="5320" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5321" i_stop="6618" i_length="1298">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6619" g_stop="6783" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="406" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6784" i_stop="7070" i_length="287">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7071" g_stop="7128" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="464" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7129" i_stop="8090" i_length="962">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8091" g_stop="8175" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="549" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E274726" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5080" e_stop="5320"/>
          <exon e_start="6619" e_stop="6783"/>
          <exon e_start="7071" e_stop="7128"/>
          <exon e_start="8091" e_stop="8175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACGAGTACCGGGAAATACAATGTCGAACGAAGCCCCAGCAAAACCACCGTGCGACACACCGGAGCATGACTCAGCCGGCGTCAACGGCTTTGACATCAACAACGACACTTCAAGTACTGCCTTAGCAAAGGGCCTTTCCACTATAATATCTTCTCTAATCCGGGAATTTGATGATAGTGCTGCCGCCACCTCTCGTAGTCAAGATCAACTCTCTTCCACCCTCGATCGTCTCACTGGAGGTAGAACTCATCACCTTCTTCTAATTGTATTCAATGGACTTAATTTCGACATTTATTTTTGATGCTCTGTTTAATTGGATTTAGGGATCCATTTACTGTTTTACATTTCATTTTTGTTACCAATTGTTATTGAATAGTTTAAAGTGGGAAGCTTTGACAAGAGGGGCTTGTTCGGATGATAAGCACCCTCCACCTTTAATCCTAGAGTTGTGGGTTCAGTTACCAGTGGAGCAAAACGGGTGGGAGCTCCAGGGGATGGATTATAAAAATAAAAAGTAGGAAGATTTGCAAAAAGAATTGTTCTATTGACGGCACATCTTAGAAAGAGTCCAAATAATCTTTACTAAGATGGTTGTTCCAACTGAATAGCTGAATGGTTGAGTCACAGGAGTAACAATCCAGCTGCAATATGATGTGCAGGCTTACCCAAACAGATGTGGTTGCAATGTATCAAGTTGTTCAATGGATTGGTCGAGATGAGCATAAGATGCCGTCACACCATTGTCATGTTAGAGAAATCACCAGGGTTGGGGCGTGTGTGTGTGCTGGGAGGCAATAGCTGTATATGTAATTTTGTTTGCACCTTCTAGTTTCATTTGCAGCTCACCATTGTTTCCTTGAGAATGAATACAATCACTTTCTTCTTCTTTTTTGCTGTTGCTATATGATATATTATAAGTTCTCATTGAACCATAAAGCTAAAGGAGAAAAAAAAAAGAAATACACACTGCTCTCGTAGATATTAACAGAAGGCTAATAACATTGTTGGCTGTACAAAGGTCAATCTTTATTCCATACATTTTGAAAAGTCAAATTAACTTAGTGGGCTATATTTCAGCGTGTGAAAAAAAAGAGAGTTTAAGATATCTTGAAATAATATTAACTTGCCACTTTTTTAAAAATAGATATCTTGAAATAACTTTTTGGCTCCTTCCTCTCCCTTTGGTATGTACAGTGAGACTTTTGTGTTCTCTATGTAAAGTAGAGATGTCGTCCGTGCTCCTTTATGCCTGATTATTAGTGGCGACAATTGCATTGGAAAAAGGATGTAAAACTGTATTTCCTTAAGTTTTGTTACTACATGTCGATTGCATCAGACCAATCTAATTGCCATGGGCTAACTAACTATTACATGCTCTACAGATGCAAGAGAAATCACCGTTCTACATAATATCTAAAAGTATTAAAAAGGATATTAGGAATAAAGATCCAGGTTGCTAAGTCTGGTGTTTAATCGAAGATTCTGCTTTTATGTGATTAATTTTCTTGTTCTTTCTTGGTCCTGCTTCTACCTGCAGAGCTTGACAAGCTGCTGGAAGATGCCCCATTGCCTTTTATCATGCAGCATGCTGCCAGAATTTCTGGTGTTAGGAAAAGAATTACATCGTTGAACTCACTTTTGAAGTCTATACAGAGGCGTCTTGATAATATCGACCACACATTATCTGCTGGTTTGTTACATGGTACACTTATTTTTTTCTTGATACATCTTATGTCAAGTTTTTCATGGAAATTCAATTAGGATGTGTGCAGGTTCTTAATACTTTGTACTCCGCTATGAATGCTTTACTTGTGTAATCTTTCAAATAGTTCTGTACATGAATTTGGTATTATGTCCAAGCTGTAGGACATAAAAGTTCAATGGAACAGTAATTCCATAATATATCTTGGAAATTAATTTTTCCACGGGGTATATAGCGTTTTGAAGGAAGCTTATATCCACTAATGCTTTTGTTGTATCTTTTTGCAGAGAAGTCCTCAGGGGATGGTGGGCGAGACCATGAGAATCATAAGTCTTCATTGAAGAGGTAATGCTGTTTCTGGTGTTCGATGAACATATAATTTTCTCACCTGGGATTTACGTGAGTGAGAACATTTACGAGCTGTAGGAGTTTGATTTGTGATATATTTCCTAGTCTCTTGATGCAAAAAGGTAATCGAGGTTCATCGGGTCATATCTACTTATCCCTTAAACATTTGTTAGGATCTAGAACACGAAATTCTAGTGCATTAGTTGATTTTTCTATGAACCTCTTACTTTTTAAAAACAGTTTTCCTCCCCAAGAGGACATCAGAATCTAGTATGATAGACAGACATAGCTGAGCGTCAATAAGCCAGTGATCCACACAGTCTCCGCTTATTTGTACAGTTATGGAAGCAGGAGGAACAGGTTACTTCCACTGTTTGGTGGAGAAAGTTACTGGTAAATCTTGACCTCCCATTCTGAGATGCCTATCTCACTCGATAAAGAAAAAAGAAAAAACACTCCATTCTTATCTTCAGAGCAGTAATTCTAAGTAAATGTCTCAGTAGTTTTGGCCAAGTTGGGAAGTTTAACATGTAAAACAAGACAACGAGGGTCCAAAATAGGAGGCATATCATGCATAATAAGTGATACCCACACCTGGAAGAGATTACAGGTAGAGCCTGCTAACATAAACTTTTTCCAGACATATTTGGAATCAATGATATCTTCTGAGTTCTTACTATCTAACCTTTCCCAGTGTGTGTCAAATGAATTAATTCAGTGTAATCATTTTGTCTTGTGTTTCAATATCTTGGTGCTGCAATTGGATTGCTGAGAAAATCATTTGTAATTTGGAGCATTATTGAAGTGTGTAATATTACTGAAGCATGCAACATGTGATAATCTTTAGATGAGCTAAATCTTTTCGAGGTGTTGCCTTCATAATGTCTAAAAGGAAGTGTATGAGTTTTATGTCATTGACTAGCCTCTAAATCAGTTACTATGTGGTTGTTTTGGGGCAGTTCATGATCAAAATCCAGGAGAAGATTCAAATGTCCTTCGCAGTGCCCGTAGAAATCTCCTTCTGATTGCAAGCATTTGGAACTG</genome_strand>
        <mrna_strand>TGACGAGTACCGGGAAATACAATGTCGAACGAAGCCCCAGCAAAACCACCGTGCGACACACCGGAGCATGACTCAGCCGGCGTCAACGGCTTTGACATCAACAACGACACTTCAAGTACTGCCTTAGCAAAGGGCCTTTCCACTATAATATCTTCTCTAATCCGGGAATTTGATGATAGTGCTGCCGCCACCTCTCGTAGTCAAGATCAACTCTCTTCCACCCTCGATCGTCTCACTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGACAAGCTGCTGGAAGATGCCCCATTGCCTTTTATCATGCAGCATGCTGCCAGAATTTCTGGTGTTAGGAAAAGAATTACATCGTTGAACTCACTTTTGAAGTCTATACAGAGGCGTCTTGATAATATCGACCACACATTATCTGCTGGTTTGTTACATG...............................................................................................................................................................................................................................................................................................AGAAGTCCTCAGGGGATGGTGGGCGAGACCATGAGAATCATAAGTCTTCATTGAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATGATCAAAATCCAGGAGAAGATTCAAATGTCCTTCGCAGTGCCCGTAGAAATCTCCTTCTGATTGCAAGCATTTGGAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716656" ref_strand="+" ref_description="SGN-E716656 [FB17CG01]">
      <seq>ggtaatacaatgtcgaacgaagccccagcaaaaccaccgtgcgacacaccggagcatgactcagccggcgtcaacggctttgacatcaacaacgacacttcaagtactgccttagcaaagggcctttccactataatatcttctctaatccgggaatttgatgatagtgctgccgccacctctcgtagtcaagatcaactctcttccaccctcgatcgtctcactggaggcttacccaaacagatgtggttgcaatgtatcaagttgttcaatggattggtcgagatgagcataagatgccgtcacaccattgtcatgttagagaaatcaccagggttggggcgtgtgtgtgtgctgggaggcaatagctgtatatgtaattttgtttgcaccttctagtttcatttgcagctcaccattgtttccttgagaatgaatacaatcactttcttcttcttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="4792" stop="43932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5092" g_stop="5320" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5321" i_stop="5740" i_length="420">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.437" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5741" g_stop="5966" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="455" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5967" i_stop="6018" i_length="52">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.484" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6019" g_stop="6039" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="476" r_length="21" r_score="0.762"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E716656" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5092" e_stop="5320"/>
          <exon e_start="5741" e_stop="5966"/>
          <exon e_start="6019" e_stop="6039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATACAATGTCGAACGAAGCCCCAGCAAAACCACCGTGCGACACACCGGAGCATGACTCAGCCGGCGTCAACGGCTTTGACATCAACAACGACACTTCAAGTACTGCCTTAGCAAAGGGCCTTTCCACTATAATATCTTCTCTAATCCGGGAATTTGATGATAGTGCTGCCGCCACCTCTCGTAGTCAAGATCAACTCTCTTCCACCCTCGATCGTCTCACTGGAGGTAGAACTCATCACCTTCTTCTAATTGTATTCAATGGACTTAATTTCGACATTTATTTTTGATGCTCTGTTTAATTGGATTTAGGGATCCATTTACTGTTTTACATTTCATTTTTGTTACCAATTGTTATTGAATAGTTTAAAGTGGGAAGCTTTGACAAGAGGGGCTTGTTCGGATGATAAGCACCCTCCACCTTTAATCCTAGAGTTGTGGGTTCAGTTACCAGTGGAGCAAAACGGGTGGGAGCTCCAGGGGATGGATTATAAAAATAAAAAGTAGGAAGATTTGCAAAAAGAATTGTTCTATTGACGGCACATCTTAGAAAGAGTCCAAATAATCTTTACTAAGATGGTTGTTCCAACTGAATAGCTGAATGGTTGAGTCACAGGAGTAACAATCCAGCTGCAATATGATGTGCAGGCTTACCCAAACAGATGTGGTTGCAATGTATCAAGTTGTTCAATGGATTGGTCGAGATGAGCATAAGATGCCGTCACACCATTGTCATGTTAGAGAAATCACCAGGGTTGGGGCGTGTGTGTGTGCTGGGAGGCAATAGCTGTATATGTAATTTTGTTTGCACCTTCTAGTTTCATTTGCAGCTCACCATTGTTTCCTTGAGAATGAATACAATCACTTTCTTCTTCTTTTTTGCTGTTGCTATATGATATATTATAAGTTCTCATTGAACCATAAAGCTAAAGGAGAAAAAAAAAAGA</genome_strand>
        <mrna_strand>GGTAATACAATGTCGAACGAAGCCCCAGCAAAACCACCGTGCGACACACCGGAGCATGACTCAGCCGGCGTCAACGGCTTTGACATCAACAACGACACTTCAAGTACTGCCTTAGCAAAGGGCCTTTCCACTATAATATCTTCTCTAATCCGGGAATTTGATGATAGTGCTGCCGCCACCTCTCGTAGTCAAGATCAACTCTCTTCCACCCTCGATCGTCTCACTGGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTACCCAAACAGATGTGGTTGCAATGTATCAAGTTGTTCAATGGATTGGTCGAGATGAGCATAAGATGCCGTCACACCATTGTCATGTTAGAGAAATCACCAGGGTTGGGGCGTGTGTGTGTGCTGGGAGGCAATAGCTGTATATGTAATTTTGTTTGCACCTTCTAGTTTCATTTGCAGCTCACCATTGTTTCCTTGAGAATGAATACAATCACTTTCTTCTT....................................................CTTAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274732" ref_strand="+" ref_description="SGN-E274732 [cLEN-13-N1]">
      <seq>cttcaagtactgccttagctgagggcctttccactataatatcttctctaatccgggaatttgatgatagtgctgccgccacctctcgtagtcaagatcaactgtcttacaccctggataggctcactggagagcttgacaagctgctggaagatgccccattgccttttatgatgcagcatgctgccagaatttctggtgttaggaaaagaattacatcgttgaactcacttttgaagtctatacagaggcgtcttgataatatcgaccacacattatctgctggattgatacatgagaagtcctcaggggatggtgggcgagaccatgagaatcataagtcttcattgaagagttcatgatcaaaatccaggagaagattcaaatgtccttcgcagtgcccgtagaaatctccttctgattgcaagcatttggaactgattcagccttgtggtgtaaaaggtagtctgatgcatgaggttataacacactgcgttctgaaaagatgttcttttacctgtcaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="4889" stop="8562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5189" g_stop="5320" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5321" i_stop="6618" i_length="1298">
            <donor d_prob="0.992" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6619" g_stop="6783" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="297" r_length="165" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6784" i_stop="7070" i_length="287">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7071" g_stop="7128" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="355" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7129" i_stop="8090" i_length="962">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8091" g_stop="8262" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="527" r_length="172" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E274732" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5189" e_stop="5320"/>
          <exon e_start="6619" e_stop="6783"/>
          <exon e_start="7071" e_stop="7128"/>
          <exon e_start="8091" e_stop="8262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAAGTACTGCCTTAGCAAAGGGCCTTTCCACTATAATATCTTCTCTAATCCGGGAATTTGATGATAGTGCTGCCGCCACCTCTCGTAGTCAAGATCAACTCTCTTCCACCCTCGATCGTCTCACTGGAGGTAGAACTCATCACCTTCTTCTAATTGTATTCAATGGACTTAATTTCGACATTTATTTTTGATGCTCTGTTTAATTGGATTTAGGGATCCATTTACTGTTTTACATTTCATTTTTGTTACCAATTGTTATTGAATAGTTTAAAGTGGGAAGCTTTGACAAGAGGGGCTTGTTCGGATGATAAGCACCCTCCACCTTTAATCCTAGAGTTGTGGGTTCAGTTACCAGTGGAGCAAAACGGGTGGGAGCTCCAGGGGATGGATTATAAAAATAAAAAGTAGGAAGATTTGCAAAAAGAATTGTTCTATTGACGGCACATCTTAGAAAGAGTCCAAATAATCTTTACTAAGATGGTTGTTCCAACTGAATAGCTGAATGGTTGAGTCACAGGAGTAACAATCCAGCTGCAATATGATGTGCAGGCTTACCCAAACAGATGTGGTTGCAATGTATCAAGTTGTTCAATGGATTGGTCGAGATGAGCATAAGATGCCGTCACACCATTGTCATGTTAGAGAAATCACCAGGGTTGGGGCGTGTGTGTGTGCTGGGAGGCAATAGCTGTATATGTAATTTTGTTTGCACCTTCTAGTTTCATTTGCAGCTCACCATTGTTTCCTTGAGAATGAATACAATCACTTTCTTCTTCTTTTTTGCTGTTGCTATATGATATATTATAAGTTCTCATTGAACCATAAAGCTAAAGGAGAAAAAAAAAAGAAATACACACTGCTCTCGTAGATATTAACAGAAGGCTAATAACATTGTTGGCTGTACAAAGGTCAATCTTTATTCCATACATTTTGAAAAGTCAAATTAACTTAGTGGGCTATATTTCAGCGTGTGAAAAAAAAGAGAGTTTAAGATATCTTGAAATAATATTAACTTGCCACTTTTTTAAAAATAGATATCTTGAAATAACTTTTTGGCTCCTTCCTCTCCCTTTGGTATGTACAGTGAGACTTTTGTGTTCTCTATGTAAAGTAGAGATGTCGTCCGTGCTCCTTTATGCCTGATTATTAGTGGCGACAATTGCATTGGAAAAAGGATGTAAAACTGTATTTCCTTAAGTTTTGTTACTACATGTCGATTGCATCAGACCAATCTAATTGCCATGGGCTAACTAACTATTACATGCTCTACAGATGCAAGAGAAATCACCGTTCTACATAATATCTAAAAGTATTAAAAAGGATATTAGGAATAAAGATCCAGGTTGCTAAGTCTGGTGTTTAATCGAAGATTCTGCTTTTATGTGATTAATTTTCTTGTTCTTTCTTGGTCCTGCTTCTACCTGCAGAGCTTGACAAGCTGCTGGAAGATGCCCCATTGCCTTTTATCATGCAGCATGCTGCCAGAATTTCTGGTGTTAGGAAAAGAATTACATCGTTGAACTCACTTTTGAAGTCTATACAGAGGCGTCTTGATAATATCGACCACACATTATCTGCTGGTTTGTTACATGGTACACTTATTTTTTTCTTGATACATCTTATGTCAAGTTTTTCATGGAAATTCAATTAGGATGTGTGCAGGTTCTTAATACTTTGTACTCCGCTATGAATGCTTTACTTGTGTAATCTTTCAAATAGTTCTGTACATGAATTTGGTATTATGTCCAAGCTGTAGGACATAAAAGTTCAATGGAACAGTAATTCCATAATATATCTTGGAAATTAATTTTTCCACGGGGTATATAGCGTTTTGAAGGAAGCTTATATCCACTAATGCTTTTGTTGTATCTTTTTGCAGAGAAGTCCTCAGGGGATGGTGGGCGAGACCATGAGAATCATAAGTCTTCATTGAAGAGGTAATGCTGTTTCTGGTGTTCGATGAACATATAATTTTCTCACCTGGGATTTACGTGAGTGAGAACATTTACGAGCTGTAGGAGTTTGATTTGTGATATATTTCCTAGTCTCTTGATGCAAAAAGGTAATCGAGGTTCATCGGGTCATATCTACTTATCCCTTAAACATTTGTTAGGATCTAGAACACGAAATTCTAGTGCATTAGTTGATTTTTCTATGAACCTCTTACTTTTTAAAAACAGTTTTCCTCCCCAAGAGGACATCAGAATCTAGTATGATAGACAGACATAGCTGAGCGTCAATAAGCCAGTGATCCACACAGTCTCCGCTTATTTGTACAGTTATGGAAGCAGGAGGAACAGGTTACTTCCACTGTTTGGTGGAGAAAGTTACTGGTAAATCTTGACCTCCCATTCTGAGATGCCTATCTCACTCGATAAAGAAAAAAGAAAAAACACTCCATTCTTATCTTCAGAGCAGTAATTCTAAGTAAATGTCTCAGTAGTTTTGGCCAAGTTGGGAAGTTTAACATGTAAAACAAGACAACGAGGGTCCAAAATAGGAGGCATATCATGCATAATAAGTGATACCCACACCTGGAAGAGATTACAGGTAGAGCCTGCTAACATAAACTTTTTCCAGACATATTTGGAATCAATGATATCTTCTGAGTTCTTACTATCTAACCTTTCCCAGTGTGTGTCAAATGAATTAATTCAGTGTAATCATTTTGTCTTGTGTTTCAATATCTTGGTGCTGCAATTGGATTGCTGAGAAAATCATTTGTAATTTGGAGCATTATTGAAGTGTGTAATATTACTGAAGCATGCAACATGTGATAATCTTTAGATGAGCTAAATCTTTTCGAGGTGTTGCCTTCATAATGTCTAAAAGGAAGTGTATGAGTTTTATGTCATTGACTAGCCTCTAAATCAGTTACTATGTGGTTGTTTTGGGGCAGTTCATGATCAAAATCCAGGAGAAGATTCAAATGTCCTTCGCAGTGCCCGTAGAAATCTCCTTCTGATTGCAAGCATTTGGAACTGATTCAGCCTTGTGGTGTAAAAGGTAGTCTGATGCATGAGGTTATAACACACTGCGTTCTGAAAAGATGTTCTTTTACCTGTCAAAAA</genome_strand>
        <mrna_strand>CTTCAAGTACTGCCTTAGCTGAGGGCCTTTCCACTATAATATCTTCTCTAATCCGGGAATTTGATGATAGTGCTGCCGCCACCTCTCGTAGTCAAGATCAACTGTCTTACACCCTGGATAGGCTCACTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGACAAGCTGCTGGAAGATGCCCCATTGCCTTTTATGATGCAGCATGCTGCCAGAATTTCTGGTGTTAGGAAAAGAATTACATCGTTGAACTCACTTTTGAAGTCTATACAGAGGCGTCTTGATAATATCGACCACACATTATCTGCTGGATTGATACATG...............................................................................................................................................................................................................................................................................................AGAAGTCCTCAGGGGATGGTGGGCGAGACCATGAGAATCATAAGTCTTCATTGAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATGATCAAAATCCAGGAGAAGATTCAAATGTCCTTCGCAGTGCCCGTAGAAATCTCCTTCTGATTGCAAGCATTTGGAACTGATTCAGCCTTGTGGTGTAAAAGGTAGTCTGATGCATGAGGTTATAACACACTGCGTTCTGAAAAGATGTTCTTTTACCTGTCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268758" ref_strand="+" ref_description="SGN-E268758 [cLEM-16-P13]">
      <seq>ctctttctttttatatatatatatattccattctgtaatcgttacgttaacgtttcttctatttgtatgtacgccggaaattatggcttcagcttgcgttaacaaaatgggtatgtcgccggagaagtttttggattgttctccggctgcgaagtacaagtcatatggttggttaagtccaaggatgtcatttagtaaggacggcgaagcttccaaagttgccggagctaagcagacgagtgttgaaaatgataaagtggaggaattagatccagaagtttcgaaagatatgggcgattttgagttttgccttgaagatccggttaatatgctgccagctgatgagctttttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="12336" stop="13290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12636" g_stop="12990" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E268758" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12636" e_stop="12990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTCTTTTTATATATATATATATTCCATTCTGTAATCGTTACGTTAACGTTTCTTCTATTTGTATGTACGCCGGAAATTATGGCTTCAGCTTGCGTTAACAAAATGGGTATGTCGCCGGAGAAGTTTTTGGATTGTTCTCCGGCTGCGAAGTACAAGTCATATGGTTGGTTAAGTCCAAGGATGTCATTTAGTAGGGACGGCGAAGCTTCCAAGGTTGCCGGAGCTAAGCAGACGAGTGTTGAAAATGATAAGGTGGAGGAATTAGATCCAGAAGTTTCGAAAGATATGGGCGATTTTGAGTTTTGCCTTGAAGATCCGGTAAATATGCTGCCAGCTGATGAGCTTTTTTTC</genome_strand>
        <mrna_strand>CTCTTTCTTTTTATATATATATATATTCCATTCTGTAATCGTTACGTTAACGTTTCTTCTATTTGTATGTACGCCGGAAATTATGGCTTCAGCTTGCGTTAACAAAATGGGTATGTCGCCGGAGAAGTTTTTGGATTGTTCTCCGGCTGCGAAGTACAAGTCATATGGTTGGTTAAGTCCAAGGATGTCATTTAGTAAGGACGGCGAAGCTTCCAAAGTTGCCGGAGCTAAGCAGACGAGTGTTGAAAATGATAAAGTGGAGGAATTAGATCCAGAAGTTTCGAAAGATATGGGCGATTTTGAGTTTTGCCTTGAAGATCCGGTTAATATGCTGCCAGCTGATGAGCTTTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725625" ref_strand="+" ref_description="SGN-E725625 [LA04BD04]">
      <seq>atttcagaccaattctcttctttcacaaagaagctagtaacgtgcaaatcttccctacatggttgaagagttgaagtattcttgcaacactgccagtgaaaccctaaaatggatccatgcaattatcaacttcattgcaccttatcgttattttataaatgctcatgtcgtcggctttttaaaggatagactatgggaagctgtggataaagaatgcatggattgtttacagaaagagtcggttgaaaatattctccggattccttctggtgtggttcaggatcactggcctggctcacttaaagacttcatacttactctgaggtctctttgtctttcacgtgaacagactgattttcaggaattttcaggaatgcacatagcttcactaagtaatgtgttagctcaaggcatgaatcataagagaaagcatgaatgtggagtactttctgctctggtcagcttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="20181" stop="22115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20276" g_stop="20317" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20318" i_stop="20487" i_length="170">
            <donor d_prob="0.928" d_score="0.93"/>
            <acceptor a_prob="0.823" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20488" g_stop="20629" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="184" r_length="142" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20630" i_stop="20756" i_length="127">
            <donor d_prob="0.968" d_score="0.92"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20757" g_stop="20852" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="280" r_length="96" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20853" i_stop="21387" i_length="535">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21388" g_stop="21468" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="361" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21469" i_stop="21738" i_length="270">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21739" g_stop="21813" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="436" r_length="75" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E725625" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20276" e_stop="20317"/>
          <exon e_start="20488" e_stop="20629"/>
          <exon e_start="20757" e_stop="20852"/>
          <exon e_start="21388" e_stop="21468"/>
          <exon e_start="21739" e_stop="21813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCAGCCCAATTCTCTTCTTCCACAAAGAAGCTAGCAACGGTAAAACCCAGAATCGACAAAACAATGGTTAATGAGTATACATTCTGTTTTGGAGTAGTGGTTAGCATATTGCATTGTTAGACTGTCTATGTCACTTCTCAGTTGCTTGATACTTATGGAAATGCATATTTTATTACATTTAAGTTGTTTTTCACCTTGTTCTCTGTTAGTGCAAATCTTCCCTCCATGGCTGAAGAGTTCAAGTATTCTTGCAACACTGCCAGTGAAACCCTAGAATGGATCCATGCAATTATCAACTTCATTGCACCTTATCGTTATTTTATAGATGCTCATGTCGTCAACTTTTTCAAGGTCTTCACCTTCTATTCAGTTTACATAAGATTTAATTGATCTATTTTTGCTACTGTTTATGCTTTGCATATTGCACTCTGCTGCTATTTCATGTGTAAACTTGGAAATTGTTTGCGAGTATATGCAGGATAGACTATGGGAAGCTGTGGATAAAGAATGGATGGATTGTTTACAGAAGGAGTCGGTTGAAAATCTTCTCCGGATTCCTTCTGGTGTGGTTCAGGTAGATATAAGCACATATGTTTTTTGCTTTAAACTTGATATTGTTGAGTTCATGTGTACTTGGATCATTTCTAGTTCGAATTTGTTTGGTTAGTTTGAGTTATCGGAAGTGTAGAGTTACTAGGAGGTTCATTTGCTGCTTTGCTTTTCAGGAAGAAGAATTTCACATTTTTTGTGTTGAATTACTTGTACAGGGTCAAGCAGTAGCACATAGTTTCACTGCTCAATACTACGATGTGAGCTTATCTTTGAATATGACAAGTTCAACGAATAGCAAAGTTCCATTGGCTTGATTGGCCACTAATTATAGCAAATGTAATTTGGATAAATATAACCATATTTATGGTATCTATTCCTTTTGCTGTATGGTTTTAAATAACAAGAATTTCAATACTTGAGTTTAATGTCACCTATCCAGAACTAAAAGGAAAAAAAATGAGAGGAAACAAGTACTTTATTGTCTCCCAACTATAGTATCTATAGCAGTAAGATGACCTATTTCTTTGTTAATTGACTTTGTTTATTTGTGTTGTTAGGATCACTGGCCTGGCTCACTTAAAGACTTCATACTTACTCTGAGGTCTCTTTGTCTTTCACGTGAACAGGCTGATTTTCAGGTATATTTATTTTTATTATCATTCTTTTCTTAAATTTGTGATACATGGTAGTTATAGATTTACCATTAGAGATTTTCGACTTCTCGAATGCCATTGTTCTTACTCATGCTTTTCCCATATTTGAAGTTTTGTACACATAGCTTTCTTTACTGGTGGCATTTCTTCTGGTTTGTTGCTGTGGCATCTGGGTTATGATATCTGTATAACTAGACTAACATTTCACAAGGGAGTCAGGAATTGAATTTCACTTCTTCTTCTGTTTGCTTGCAGGAATTTTCAGGAATGCACATAGCTTCACTAAGTAATGTTTTAGCTCAAGGCATGAATCATAAGAAAAAGCATGAA</genome_strand>
        <mrna_strand>ATTTCAGACCAATTCTCTTCTTTCACAAAGAAGCTAGTAACG..........................................................................................................................................................................TGCAAATCTTCCCTACATGGTTGAAGAGTTGAAGTATTCTTGCAACACTGCCAGTGAAACCCTAAAATGGATCCATGCAATTATCAACTTCATTGCACCTTATCGTTATTTTATAAATGCTCATGTCGTCGGCTTTTTAAAG...............................................................................................................................GATAGACTATGGGAAGCTGTGGATAAAGAATGCATGGATTGTTTACAGAAAGAGTCGGTTGAAAATATTCTCCGGATTCCTTCTGGTGTGGTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCACTGGCCTGGCTCACTTAAAGACTTCATACTTACTCTGAGGTCTCTTTGTCTTTCACGTGAACAGACTGATTTTCAG..............................................................................................................................................................................................................................................................................GAATTTTCAGGAATGCACATAGCTTCACTAAGTAATGTGTTAGCTCAAGGCATGAATCATAAGAGAAAGCATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315848" ref_strand="+" ref_description="SGN-E315848 [cTOA-26-I13]">
      <seq>aacggtaaaacccagaatcgacaaaacaatggttaatgagtatacattctgttttggagtagtggttagcatattgcattgttagactgtctatgtcacttctcagttgcttgatacttatggaaatgcatattttattacatttaagttgtttttcaccttgttctctgttagtgcaaatcttccctccatggctgaagagttcaagtattcttgcaacactgccagtgaaaccctagaatggatccatgcaattatcaacttcattgcaccttatcgttattttatagatgctcatgtcgtcaactttttcaaggatagactatgggaagctgtggataaagaatggatggattgtttacagaaggagtcggttgaaaatcttctccggattccttctggtgtggttcaggatcactggcctggctcacttaaagacttcatacttactctgaggtctctttgtctttcacgtgaacaggctgattttcaggaattttcaggaatgcacatagcttcactaagtaatgttttagctcaaggcatgaatcataagaaaaagcatgaagtggaagtactttctgctctggtcagcttagtcgcaaagcaagttggtgcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="20014" stop="22634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20314" g_stop="20629" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20630" i_stop="20756" i_length="127">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20757" g_stop="20852" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="412" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20853" i_stop="21387" i_length="535">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21388" g_stop="21468" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="493" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21469" i_stop="21738" i_length="270">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21739" g_stop="21813" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="568" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21814" i_stop="22281" i_length="468">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22282" g_stop="22334" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="621" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E315848" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20314" e_stop="20629"/>
          <exon e_start="20757" e_stop="20852"/>
          <exon e_start="21388" e_stop="21468"/>
          <exon e_start="21739" e_stop="21813"/>
          <exon e_start="22282" e_stop="22334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGGTAAAACCCAGAATCGACAAAACAATGGTTAATGAGTATACATTCTGTTTTGGAGTAGTGGTTAGCATATTGCATTGTTAGACTGTCTATGTCACTTCTCAGTTGCTTGATACTTATGGAAATGCATATTTTATTACATTTAAGTTGTTTTTCACCTTGTTCTCTGTTAGTGCAAATCTTCCCTCCATGGCTGAAGAGTTCAAGTATTCTTGCAACACTGCCAGTGAAACCCTAGAATGGATCCATGCAATTATCAACTTCATTGCACCTTATCGTTATTTTATAGATGCTCATGTCGTCAACTTTTTCAAGGTCTTCACCTTCTATTCAGTTTACATAAGATTTAATTGATCTATTTTTGCTACTGTTTATGCTTTGCATATTGCACTCTGCTGCTATTTCATGTGTAAACTTGGAAATTGTTTGCGAGTATATGCAGGATAGACTATGGGAAGCTGTGGATAAAGAATGGATGGATTGTTTACAGAAGGAGTCGGTTGAAAATCTTCTCCGGATTCCTTCTGGTGTGGTTCAGGTAGATATAAGCACATATGTTTTTTGCTTTAAACTTGATATTGTTGAGTTCATGTGTACTTGGATCATTTCTAGTTCGAATTTGTTTGGTTAGTTTGAGTTATCGGAAGTGTAGAGTTACTAGGAGGTTCATTTGCTGCTTTGCTTTTCAGGAAGAAGAATTTCACATTTTTTGTGTTGAATTACTTGTACAGGGTCAAGCAGTAGCACATAGTTTCACTGCTCAATACTACGATGTGAGCTTATCTTTGAATATGACAAGTTCAACGAATAGCAAAGTTCCATTGGCTTGATTGGCCACTAATTATAGCAAATGTAATTTGGATAAATATAACCATATTTATGGTATCTATTCCTTTTGCTGTATGGTTTTAAATAACAAGAATTTCAATACTTGAGTTTAATGTCACCTATCCAGAACTAAAAGGAAAAAAAATGAGAGGAAACAAGTACTTTATTGTCTCCCAACTATAGTATCTATAGCAGTAAGATGACCTATTTCTTTGTTAATTGACTTTGTTTATTTGTGTTGTTAGGATCACTGGCCTGGCTCACTTAAAGACTTCATACTTACTCTGAGGTCTCTTTGTCTTTCACGTGAACAGGCTGATTTTCAGGTATATTTATTTTTATTATCATTCTTTTCTTAAATTTGTGATACATGGTAGTTATAGATTTACCATTAGAGATTTTCGACTTCTCGAATGCCATTGTTCTTACTCATGCTTTTCCCATATTTGAAGTTTTGTACACATAGCTTTCTTTACTGGTGGCATTTCTTCTGGTTTGTTGCTGTGGCATCTGGGTTATGATATCTGTATAACTAGACTAACATTTCACAAGGGAGTCAGGAATTGAATTTCACTTCTTCTTCTGTTTGCTTGCAGGAATTTTCAGGAATGCACATAGCTTCACTAAGTAATGTTTTAGCTCAAGGCATGAATCATAAGAAAAAGCATGAAGTAAGGCATGAAAGTAGCTTAGTCCTCTTACACTCCTATCTTTGTGCTCAATTGGTTGGCTACAAATCTGTGGAACAGTGTTTTATTCTTTGCTTTGAGTCTTTTGTGTGCACCACCTGCTGATATCAGGTCATTTGCGAAAGCTTCTTCTTTTTTTTTTACCATCAAGCTATTAATATTAGCCTTTAGCTATGTGATGCTGGAGTTTTTTTCTAACATTGAATTTTCTAGCTATGTGCTGCTCTAAGTATCCGTTTCAGTGTTCATTTTGTTTTCTCAACCTGAATGAAAGAATGTAATAAATTTTCAGAAGTTTTAACAAAATGGATCAAAGATATACGAGTGTTTTTAAAAAAAAAAATAATTTCTACATTGAGCTTAGGTTCAGAAAACCAACTAATGCAGGTTCCGTGTATGGGTTCAATTTTCTTAACCTGAACGATAGAATGGTAAATACTGTCTAAGCAGGTGGAAGTACTTTCTGCTCTGGTCAGCTTAGTCGCAAAGCAAGTTGGTGCCCG</genome_strand>
        <mrna_strand>AACGGTAAAACCCAGAATCGACAAAACAATGGTTAATGAGTATACATTCTGTTTTGGAGTAGTGGTTAGCATATTGCATTGTTAGACTGTCTATGTCACTTCTCAGTTGCTTGATACTTATGGAAATGCATATTTTATTACATTTAAGTTGTTTTTCACCTTGTTCTCTGTTAGTGCAAATCTTCCCTCCATGGCTGAAGAGTTCAAGTATTCTTGCAACACTGCCAGTGAAACCCTAGAATGGATCCATGCAATTATCAACTTCATTGCACCTTATCGTTATTTTATAGATGCTCATGTCGTCAACTTTTTCAAG...............................................................................................................................GATAGACTATGGGAAGCTGTGGATAAAGAATGGATGGATTGTTTACAGAAGGAGTCGGTTGAAAATCTTCTCCGGATTCCTTCTGGTGTGGTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCACTGGCCTGGCTCACTTAAAGACTTCATACTTACTCTGAGGTCTCTTTGTCTTTCACGTGAACAGGCTGATTTTCAG..............................................................................................................................................................................................................................................................................GAATTTTCAGGAATGCACATAGCTTCACTAAGTAATGTTTTAGCTCAAGGCATGAATCATAAGAAAAAGCATGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAGTACTTTCTGCTCTGGTCAGCTTAGTCGCAAAGCAAGTTGGTGCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449966" ref_strand="+" ref_description="SGN-E449966 [cSTS-8-C9]">
      <seq>ctgagctcaaggtaactgtggcgggagagtgcaaatcttccctccatggctgaagagttcaagtattcttgcaacactgcgagtgaaaccctacaatggatccatgcaatcatcaacttcattgcaccttatcgttatttcttagatgctcatgtcgtcaactttttcaaggatagactatgggaacctgttgataaagaatggatggattgtttacggaaggagtcggttggaaatcttctccggattccttctggtgtggttcaggatcactggcctggctcactgaaggatttcatccttactctgaggtctctttctctttcacgggaacaggcagattttcaggaattttcaggaatgcacatagcttcactaagtaatgttttagctcaagggatgaatcataagaaaaagcatgaagtggaagcgctttctgctctggtcagtttagtcgcaaagcaagttggagcccgaacagttgttgatgttggtgctggacagggttatcttgcacaagtgcttgcttttgactaccagctttctgtaattgcgattgatgcctgttcacatcatggtaagattactgatgcacgtgcggagcgaatcangaaacactatgcagctaagatgcgtaaaaactgctccgaacagagagagtttagtgtgccaaagacagttacatgccgagtgctgtcttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="20186" stop="24357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20488" g_stop="20629" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="171" r_length="142" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20630" i_stop="20756" i_length="127">
            <donor d_prob="0.968" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20757" g_stop="20852" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="267" r_length="96" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20853" i_stop="21387" i_length="535">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21388" g_stop="21468" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="348" r_length="81" r_score="0.914"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21469" i_stop="21738" i_length="270">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21739" g_stop="21813" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="423" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21814" i_stop="22281" i_length="468">
            <donor d_prob="0.655" d_score="0.98"/>
            <acceptor a_prob="0.928" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22282" g_stop="22362" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="504" r_length="81" r_score="0.938"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22363" i_stop="23176" i_length="814">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.929" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23177" g_stop="23316" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="644" r_length="140" r_score="0.950"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="23317" i_stop="23998" i_length="682">
            <donor d_prob="0.888" d_score="0.94"/>
            <acceptor a_prob="0.942" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="23999" g_stop="24057" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="703" r_length="59" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E449966" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20488" e_stop="20629"/>
          <exon e_start="20757" e_stop="20852"/>
          <exon e_start="21388" e_stop="21468"/>
          <exon e_start="21739" e_stop="21813"/>
          <exon e_start="22282" e_stop="22362"/>
          <exon e_start="23177" e_stop="23316"/>
          <exon e_start="23999" e_stop="24057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAAATCTTCCCTCCATGGCTGAAGAGTTCAAGTATTCTTGCAACACTGCCAGTGAAACCCTAGAATGGATCCATGCAATTATCAACTTCATTGCACCTTATCGTTATTTTATAGATGCTCATGTCGTCAACTTTTTCAAGGTCTTCACCTTCTATTCAGTTTACATAAGATTTAATTGATCTATTTTTGCTACTGTTTATGCTTTGCATATTGCACTCTGCTGCTATTTCATGTGTAAACTTGGAAATTGTTTGCGAGTATATGCAGGATAGACTATGGGAAGCTGTGGATAAAGAATGGATGGATTGTTTACAGAAGGAGTCGGTTGAAAATCTTCTCCGGATTCCTTCTGGTGTGGTTCAGGTAGATATAAGCACATATGTTTTTTGCTTTAAACTTGATATTGTTGAGTTCATGTGTACTTGGATCATTTCTAGTTCGAATTTGTTTGGTTAGTTTGAGTTATCGGAAGTGTAGAGTTACTAGGAGGTTCATTTGCTGCTTTGCTTTTCAGGAAGAAGAATTTCACATTTTTTGTGTTGAATTACTTGTACAGGGTCAAGCAGTAGCACATAGTTTCACTGCTCAATACTACGATGTGAGCTTATCTTTGAATATGACAAGTTCAACGAATAGCAAAGTTCCATTGGCTTGATTGGCCACTAATTATAGCAAATGTAATTTGGATAAATATAACCATATTTATGGTATCTATTCCTTTTGCTGTATGGTTTTAAATAACAAGAATTTCAATACTTGAGTTTAATGTCACCTATCCAGAACTAAAAGGAAAAAAAATGAGAGGAAACAAGTACTTTATTGTCTCCCAACTATAGTATCTATAGCAGTAAGATGACCTATTTCTTTGTTAATTGACTTTGTTTATTTGTGTTGTTAGGATCACTGGCCTGGCTCACTTAAAGACTTCATACTTACTCTGAGGTCTCTTTGTCTTTCACGTGAACAGGCTGATTTTCAGGTATATTTATTTTTATTATCATTCTTTTCTTAAATTTGTGATACATGGTAGTTATAGATTTACCATTAGAGATTTTCGACTTCTCGAATGCCATTGTTCTTACTCATGCTTTTCCCATATTTGAAGTTTTGTACACATAGCTTTCTTTACTGGTGGCATTTCTTCTGGTTTGTTGCTGTGGCATCTGGGTTATGATATCTGTATAACTAGACTAACATTTCACAAGGGAGTCAGGAATTGAATTTCACTTCTTCTTCTGTTTGCTTGCAGGAATTTTCAGGAATGCACATAGCTTCACTAAGTAATGTTTTAGCTCAAGGCATGAATCATAAGAAAAAGCATGAAGTAAGGCATGAAAGTAGCTTAGTCCTCTTACACTCCTATCTTTGTGCTCAATTGGTTGGCTACAAATCTGTGGAACAGTGTTTTATTCTTTGCTTTGAGTCTTTTGTGTGCACCACCTGCTGATATCAGGTCATTTGCGAAAGCTTCTTCTTTTTTTTTTACCATCAAGCTATTAATATTAGCCTTTAGCTATGTGATGCTGGAGTTTTTTTCTAACATTGAATTTTCTAGCTATGTGCTGCTCTAAGTATCCGTTTCAGTGTTCATTTTGTTTTCTCAACCTGAATGAAAGAATGTAATAAATTTTCAGAAGTTTTAACAAAATGGATCAAAGATATACGAGTGTTTTTAAAAAAAAAAATAATTTCTACATTGAGCTTAGGTTCAGAAAACCAACTAATGCAGGTTCCGTGTATGGGTTCAATTTTCTTAACCTGAACGATAGAATGGTAAATACTGTCTAAGCAGGTGGAAGTACTTTCTGCTCTGGTCAGCTTAGTCGCAAAGCAAGTTGGTGCCCGAACAATTGTTGATGTTGGTGCTGGACAGGTGTGTCTACTTCTGCTTTTGTACAACTATCAAGCTTGTTCCTATGCAATTCAGATATTTTGCCTCTTTTAGTGTTGATACATATAAGTGTGTATCTATGTTTGCATATTAGGATTATAAATTAATTATTATTTTATCTTAATTTGATAGAATGACTCAATACATAGGTATAGACTCTACATGACCAAGGACTTCTATTCGAGTTTGTAGATGGTGCTAGTTAATATTTTTTGCATCAATTCCGTGTTGGGTTTCTACCCACAAAGGTAAGGATAAGATTCTGGGTATGTTGCTGTAGTAATTCCATGTTGGTTTATTAAATTGATCGTCGGACAGACTTAAGGTGCAATTACTCCTGATAGTGTTGAAAGAAAAATCCAATAATTTTTCTAGTAATTCTAATTGCAATAACATTTATGCCACAATCCCAAGAAAGTTTGGGTCAGGTAGAATTTTCACTCTTCATGCCGCTCCATATAAGCTCATCTCATTCAAATATTGTACAAAACAGAATTAAAGTTGTAATAAGAACGAACGTGTTCAGGTCACTGAAAAGGCCTTGTGAACCTTTTCTACTGGAGTAACCTTCTTACCAATAGTTTCAATGAATATTTTGACTTTGTTATTCCTTAGAATTCATCAGGAAGGTTGATTGTGCTAACCTGTTTTCCACTGATGTAATTTTCAGCATCTACTGGATCCAAGCCTTACTAAAAAAAAATAAATTCTAGTACTCGTTTGTGCGGAGAAATAATCATCTGGGTTATCTGGTTTCATGCCAACTGCATCTACTTAGACTGTACATGTGGTGCAGGGTTATCTTGCACAAGTGCTTGCTTTTGACTACCAGCTTTCGGTAATTGCTATTGATGCTTGTTCACATCATGGCAAGATTACTGATGCACGTGCAGAGCGAATCAGGAAACACTATGCAGCTAAGATGCGTAAAAATTGGTAGGTAGAGTCTCAGAACGCGTATTTGTTGAAATTATCATATATATGCAGCACATATTCCTTATGCTAATGAAATCTTTACACCTAAAAAGTGGTCTTAAAATCTTGGCTGTGAATTGAAACTTTAGGACTATAGAGGAAGTTTATCTTCTAAGAAGTTGAGAGAAAGAAAAACTTCTTGCTTCTCTCACAGAGGGAAATAAATTTTTAACTGCTGCAACTTGAGTTATAAACTTTAGGACTATAGAGGAAGTTTATCTTCTAAGAAGTTTGGAGAAAGAAAAACTTCTTCCTTCTCTCACAGAGGGAAATAATCTGATAAACGTTACACAATAAATAACAGTGGTGGGCAGTAATCTCCGCCTACCTTATTTTCAGACAAACGAAATACATAGGTTAAGACTAACAAGCAATACTGTCTTAGTTTATCCAAAGAAATTAATGTGCGCACATGAAATACGTTTTATTAGGTACACTGGTTGGGGTGTTTGAGAAAAGCTGATTTGTTGCAGAAATTTGGCAGTATTCATTGTCCAGTTGACCAAACTATGCTTCTGTGTCAATGCTCTACATCAATCTGATTTATAGTTACACTTAGTTAGGATCAGTAGTTTGTGTCATGTTATTGGATGTGTTCCTCTTTCAGAATGCTTTTCCGTAATCCATTTCCCTTTTTTTCCAGCTCTGAACCGAGAGAGCTTAGTGTGCCAAAGACAGTTACATGCCGAGTGCTGTCTACTG</genome_strand>
        <mrna_strand>TGCAAATCTTCCCTCCATGGCTGAAGAGTTCAAGTATTCTTGCAACACTGCGAGTGAAACCCTACAATGGATCCATGCAATCATCAACTTCATTGCACCTTATCGTTATTTCTTAGATGCTCATGTCGTCAACTTTTTCAAG...............................................................................................................................GATAGACTATGGGAACCTGTTGATAAAGAATGGATGGATTGTTTACGGAAGGAGTCGGTTGGAAATCTTCTCCGGATTCCTTCTGGTGTGGTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCACTGGCCTGGCTCACTGAAGGATTTCATCCTTACTCTGAGGTCTCTTTCTCTTTCACGGGAACAGGCAGATTTTCAG..............................................................................................................................................................................................................................................................................GAATTTTCAGGAATGCACATAGCTTCACTAAGTAATGTTTTAGCTCAAGGGATGAATCATAAGAAAAAGCATGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAGCGCTTTCTGCTCTGGTCAGTTTAGTCGCAAAGCAAGTTGGAGCCCGAACAGTTGTTGATGTTGGTGCTGGACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCTTGCACAAGTGCTTGCTTTTGACTACCAGCTTTCTGTAATTGCGATTGATGCCTGTTCACATCATGGTAAGATTACTGATGCACGTGCGGAGCGAATCANGAAACACTATGCAGCTAAGATGCGTAAAAACTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCGAACAGAGAGAGTTTAGTGTGCCAAAGACAGTTACATGCCGAGTGCTGTCTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445840" ref_strand="+" ref_description="SGN-E445840 [cSTA-19-C7]">
      <seq>ggtaactgtggcgggagagtgcaaatcttccctccatggctgaggagttcaagtattcttgcaacactgcgagtgaaaccctacaatggatccatgcaatcatcaacttcattgcaccttatcgttatttcttagatgctcatgtcgtcaactttttcaaggatagactatgggaacctgttgataaagaatggatggattgtttacggaaggagtcggttggaaatcttctccggattccttctggtgtggttcaggatcactggcctggctcactgagggagttcatccttactctgaggtctctttctctttcacgtgaacaggcagattttcaggaattttcaggaatgcacatagcttcactaagtaatgttttatctcaagggatgaatcataagaaaaagcatgaagtggaagcgctttctgctctggtcagtttagtcgcaaagcaagttggagcccgaacagttgttgatgttggtgctggacaggggtatcttgcacaagtgcttgcttttgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="20186" stop="23507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20488" g_stop="20629" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="161" r_length="142" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20630" i_stop="20756" i_length="127">
            <donor d_prob="0.968" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20757" g_stop="20852" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="257" r_length="96" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20853" i_stop="21387" i_length="535">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21388" g_stop="21468" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="338" r_length="81" r_score="0.914"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21469" i_stop="21738" i_length="270">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21739" g_stop="21813" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="413" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21814" i_stop="22281" i_length="468">
            <donor d_prob="0.655" d_score="0.96"/>
            <acceptor a_prob="0.928" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22282" g_stop="22362" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="494" r_length="81" r_score="0.938"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22363" i_stop="23176" i_length="814">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.929" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23177" g_stop="23207" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="525" r_length="31" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E445840" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20488" e_stop="20629"/>
          <exon e_start="20757" e_stop="20852"/>
          <exon e_start="21388" e_stop="21468"/>
          <exon e_start="21739" e_stop="21813"/>
          <exon e_start="22282" e_stop="22362"/>
          <exon e_start="23177" e_stop="23207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAAATCTTCCCTCCATGGCTGAAGAGTTCAAGTATTCTTGCAACACTGCCAGTGAAACCCTAGAATGGATCCATGCAATTATCAACTTCATTGCACCTTATCGTTATTTTATAGATGCTCATGTCGTCAACTTTTTCAAGGTCTTCACCTTCTATTCAGTTTACATAAGATTTAATTGATCTATTTTTGCTACTGTTTATGCTTTGCATATTGCACTCTGCTGCTATTTCATGTGTAAACTTGGAAATTGTTTGCGAGTATATGCAGGATAGACTATGGGAAGCTGTGGATAAAGAATGGATGGATTGTTTACAGAAGGAGTCGGTTGAAAATCTTCTCCGGATTCCTTCTGGTGTGGTTCAGGTAGATATAAGCACATATGTTTTTTGCTTTAAACTTGATATTGTTGAGTTCATGTGTACTTGGATCATTTCTAGTTCGAATTTGTTTGGTTAGTTTGAGTTATCGGAAGTGTAGAGTTACTAGGAGGTTCATTTGCTGCTTTGCTTTTCAGGAAGAAGAATTTCACATTTTTTGTGTTGAATTACTTGTACAGGGTCAAGCAGTAGCACATAGTTTCACTGCTCAATACTACGATGTGAGCTTATCTTTGAATATGACAAGTTCAACGAATAGCAAAGTTCCATTGGCTTGATTGGCCACTAATTATAGCAAATGTAATTTGGATAAATATAACCATATTTATGGTATCTATTCCTTTTGCTGTATGGTTTTAAATAACAAGAATTTCAATACTTGAGTTTAATGTCACCTATCCAGAACTAAAAGGAAAAAAAATGAGAGGAAACAAGTACTTTATTGTCTCCCAACTATAGTATCTATAGCAGTAAGATGACCTATTTCTTTGTTAATTGACTTTGTTTATTTGTGTTGTTAGGATCACTGGCCTGGCTCACTTAAAGACTTCATACTTACTCTGAGGTCTCTTTGTCTTTCACGTGAACAGGCTGATTTTCAGGTATATTTATTTTTATTATCATTCTTTTCTTAAATTTGTGATACATGGTAGTTATAGATTTACCATTAGAGATTTTCGACTTCTCGAATGCCATTGTTCTTACTCATGCTTTTCCCATATTTGAAGTTTTGTACACATAGCTTTCTTTACTGGTGGCATTTCTTCTGGTTTGTTGCTGTGGCATCTGGGTTATGATATCTGTATAACTAGACTAACATTTCACAAGGGAGTCAGGAATTGAATTTCACTTCTTCTTCTGTTTGCTTGCAGGAATTTTCAGGAATGCACATAGCTTCACTAAGTAATGTTTTAGCTCAAGGCATGAATCATAAGAAAAAGCATGAAGTAAGGCATGAAAGTAGCTTAGTCCTCTTACACTCCTATCTTTGTGCTCAATTGGTTGGCTACAAATCTGTGGAACAGTGTTTTATTCTTTGCTTTGAGTCTTTTGTGTGCACCACCTGCTGATATCAGGTCATTTGCGAAAGCTTCTTCTTTTTTTTTTACCATCAAGCTATTAATATTAGCCTTTAGCTATGTGATGCTGGAGTTTTTTTCTAACATTGAATTTTCTAGCTATGTGCTGCTCTAAGTATCCGTTTCAGTGTTCATTTTGTTTTCTCAACCTGAATGAAAGAATGTAATAAATTTTCAGAAGTTTTAACAAAATGGATCAAAGATATACGAGTGTTTTTAAAAAAAAAAATAATTTCTACATTGAGCTTAGGTTCAGAAAACCAACTAATGCAGGTTCCGTGTATGGGTTCAATTTTCTTAACCTGAACGATAGAATGGTAAATACTGTCTAAGCAGGTGGAAGTACTTTCTGCTCTGGTCAGCTTAGTCGCAAAGCAAGTTGGTGCCCGAACAATTGTTGATGTTGGTGCTGGACAGGTGTGTCTACTTCTGCTTTTGTACAACTATCAAGCTTGTTCCTATGCAATTCAGATATTTTGCCTCTTTTAGTGTTGATACATATAAGTGTGTATCTATGTTTGCATATTAGGATTATAAATTAATTATTATTTTATCTTAATTTGATAGAATGACTCAATACATAGGTATAGACTCTACATGACCAAGGACTTCTATTCGAGTTTGTAGATGGTGCTAGTTAATATTTTTTGCATCAATTCCGTGTTGGGTTTCTACCCACAAAGGTAAGGATAAGATTCTGGGTATGTTGCTGTAGTAATTCCATGTTGGTTTATTAAATTGATCGTCGGACAGACTTAAGGTGCAATTACTCCTGATAGTGTTGAAAGAAAAATCCAATAATTTTTCTAGTAATTCTAATTGCAATAACATTTATGCCACAATCCCAAGAAAGTTTGGGTCAGGTAGAATTTTCACTCTTCATGCCGCTCCATATAAGCTCATCTCATTCAAATATTGTACAAAACAGAATTAAAGTTGTAATAAGAACGAACGTGTTCAGGTCACTGAAAAGGCCTTGTGAACCTTTTCTACTGGAGTAACCTTCTTACCAATAGTTTCAATGAATATTTTGACTTTGTTATTCCTTAGAATTCATCAGGAAGGTTGATTGTGCTAACCTGTTTTCCACTGATGTAATTTTCAGCATCTACTGGATCCAAGCCTTACTAAAAAAAAATAAATTCTAGTACTCGTTTGTGCGGAGAAATAATCATCTGGGTTATCTGGTTTCATGCCAACTGCATCTACTTAGACTGTACATGTGGTGCAGGGTTATCTTGCACAAGTGCTTGCTTTTGACT</genome_strand>
        <mrna_strand>TGCAAATCTTCCCTCCATGGCTGAGGAGTTCAAGTATTCTTGCAACACTGCGAGTGAAACCCTACAATGGATCCATGCAATCATCAACTTCATTGCACCTTATCGTTATTTCTTAGATGCTCATGTCGTCAACTTTTTCAAG...............................................................................................................................GATAGACTATGGGAACCTGTTGATAAAGAATGGATGGATTGTTTACGGAAGGAGTCGGTTGGAAATCTTCTCCGGATTCCTTCTGGTGTGGTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCACTGGCCTGGCTCACTGAGGGAGTTCATCCTTACTCTGAGGTCTCTTTCTCTTTCACGTGAACAGGCAGATTTTCAG..............................................................................................................................................................................................................................................................................GAATTTTCAGGAATGCACATAGCTTCACTAAGTAATGTTTTATCTCAAGGGATGAATCATAAGAAAAAGCATGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAGCGCTTTCTGCTCTGGTCAGTTTAGTCGCAAAGCAAGTTGGAGCCCGAACAGTTGTTGATGTTGGTGCTGGACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTATCTTGCACAAGTGCTTGCTTTTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E359308" ref_strand="-" ref_description="SGN-E359308 [cLHT-31-M10]">
      <seq>tagggcgtcaggggaaagccttacggcgccaacagaatcaaaggatcctggaatccaatttgcatcatgggggatcttcagaatctggtgaaccacgggagagtgtggcgtttcttcatgaatactcttctattcagagttctaatcgcggcgagtctaacgctgtggacagatgctcactatttgcaaaattttgtgagtctgggttaggtcgtttacatctccctcatttggcggaaacagcttacagtgcagtctggagggagtctgaatcatacgctgagttaataggaccttattggactcttcgtgctgccctgggccccgttttggaaactcttatactgcttgaccgattgttgctcctccaggagtatggcagtgatctggaggcaagcctcttacctatttttaatcctgtgttatctccgaggaatatggctatcatagctaggaaaattagaaagtagaaaattttctacagtctctaaaaatgtgattcaacatactgtgttgctatgatttgtactcagttattttgaccgcttctgtgttatcctttttttaataaaaaaaaaaaaaaaaaaactcgagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="24903" stop="43940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25203" g_stop="25289" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25290" i_stop="25637" i_length="348">
            <donor d_prob="0.793" d_score="0.96"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25638" g_stop="25828" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="281" r_length="194" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25829" i_stop="26549" i_length="721">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.241" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26550" g_stop="26840" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="572" r_length="291" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26841" i_stop="26945" i_length="105">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26946" g_stop="26971" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="598" r_length="26" r_score="0.615"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E359308" ref_strand="-">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359308" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="25203" e_stop="25289"/>
          <exon e_start="25638" e_stop="25828"/>
          <exon e_start="26550" e_stop="26840"/>
          <exon e_start="26946" e_stop="26971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGGCGTCAGGGGAAAGCCTTACGGCGCCAACAGAATCAAAGGATCCTGGAATCCAATTTGCATCATGGGGGGTCGTCAGAATCTGGTGAGTATTGTGAAGGATAGATACCATTGATAAACTTAATTGGGTTTCAAGGTATATCTAGTATTCATTATAACTTCTGTCAAATGCTTATTCTTAAGATATATCATATAATTTTGACCAGCCTTGTAAGTTGTAGATTTCATCATTTTATGCTGTACATATCTTATTGTCACGCCCCAAAACTGGAAGGATGCAACTGACATTCCATGAACATTTTTTTAAAAATTTAAACACAACATCGGTCGCCTAAACAATTGAAATAACACAAGTGACTGTATACACCCAAATTTCGAAGCTTTATGAAGGCTACCTATTAAGAAAATAAGCTCTTAAGTGCTTTCTATGCAGGTGAACCACGGGAGAGTGTGGCGTTTCTTCATGAATACTCTTCTATTCAGAGTTCTAAT---AGCGAGTCTAACGCTGTGGACAGATGCTCACTATTTGCAAAATTTTGCGAGTCTGGGTTAGGTCGTTTACATCTCCCTCATTTGGCGGATACAGCTTACAGTGCAATCTGGAGGGAGTCTGAATCATACGCTGTAAGTAGAAGATCTTTCATGACATTATTACTTTTAATTTCCTTGGAGCATTACTAGTTGTCTTCTGTACTTGAAAACTACAACATGAAGAAACCCAATACAGTCTAGCTGTACTTTAAAAACTGTTAGCGGTAAATCAAATGCAAATGCAATTTCAGAAACCTTGTTCTCTTTCCTTTACCTTTTTAAAACAAATTACAAGACAGTATATTAGTTCTGTTTTCCTTTGCTTATCGGCTGGCCAAGATTTGACCCGTTACTTTAATGAAGAGGTGTCCAGTTTGCTCAAACTGCAAGTCATTGGCAAAAACCTCTTGTGGATAGTTGGATGATTTTTAAATGGTCAACTATTTCTTCTCAGCATCAATTTGATTGACGTGATTTTAAAAGGTCAAAAATATCTTAATTAAGTTGAAGTACCACAATATTGGAGCCTTGTTGTTTATTAGTCGATGTAATAGCTTTCACTTAGGAATGGAGATCTGGTGGTTGTACATTATGTACAGCATTATTGTACTTTCAGATTCTCATGAGTTGAACTTACCAGTCCTAACTAGCTCAAAATATGTCTATGTGTGATCCTTGGTGGTTTTGTTCTCGAGAAAGTAAAGATGTCTGTTATTTCTTATATTCTTTTTGGGGCCTGATAAATAACCAAAAAGATTCCTTAAAAGGAACAAGAATCTTTCTTACTCTGATAAAAGTAATTAACGTTCCGCAGGAGTTAATAGGACCTTATTGGTCTCTTCGTGCTGCCCTGGGCCCCGTTTTGGAAACTCTTATACTGCTTGACCGATTGTTGCTCCTCCAGGAGTATGGCAGTGATCTGGAGGCAAGCCTCTTACCTATTTTTAATCCTGTGTTATCTCCGAGGAATATGGCTATCATAGCTAGGAAAATTAGAAAGTAGAAAATTTTCTACAGTCTCTAAAAATGTGATTCAACATACTGTGTTGCTATGATTTGTTCTCAGATATTTTGACCGCTTCTGTGTTATCCTTTTTTTAATAAATCTTCCTTAACCAAGAGAAAAAATGTCAGAAGAAAGGAAGCAATTTGCGACCAGGAACAAGCTATATTATTACAGATGTCTTTTTAACCAGAAAAAGAAGAACAGAAGAAACAGGAAAAATTTTGCAACCA</genome_strand>
        <mrna_strand>TAGGGCGTCAGGGGAAAGCCTTACGGCGCCAACAGAATCAAAGGATCCTGGAATCCAATTTGCATCATGGGGGATCTTCAGAATCTG............................................................................................................................................................................................................................................................................................................................................................GTGAACCACGGGAGAGTGTGGCGTTTCTTCATGAATACTCTTCTATTCAGAGTTCTAATCGCGGCGAGTCTAACGCTGTGGACAGATGCTCACTATTTGCAAAATTTTGTGAGTCTGGGTTAGGTCGTTTACATCTCCCTCATTTGGCGGAAACAGCTTACAGTGCAGTCTGGAGGGAGTCTGAATCATACGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTAATAGGACCTTATTGGACTCTTCGTGCTGCCCTGGGCCCCGTTTTGGAAACTCTTATACTGCTTGACCGATTGTTGCTCCTCCAGGAGTATGGCAGTGATCTGGAGGCAAGCCTCTTACCTATTTTTAATCCTGTGTTATCTCCGAGGAATATGGCTATCATAGCTAGGAAAATTAGAAAGTAGAAAATTTTCTACAGTCTCTAAAAATGTGATTCAACATACTGTGTTGCTATGATTTGTACTCAGTTATTTTGACCGCTTCTGTGTTATCCTTTTTTTAATAAA.........................................................................................................AAAAAAAAAAAAAAAACTCGAGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E377115" ref_strand="+" ref_description="SGN-E377115 [TUS-21-A17]">
      <seq>agagttctaatagcgagtctaacgctgtggacagatgctcactatttgcaaaattttgcgagtctgggttaggtcgtttacatctccctcatttggcggatacagcttacagtgcaatctggagggagtctgaatcatacgctgagttaataggaccttattggtctcttcgtgctgccctgggccccgttttggaaactcttatactgcttgaccgattgttgctcctccaggagtatggcagtgatctggaggcaagcctcttacctatttttaatcctgtgttatctccgaggaatatggctatcatagctaggaaaattagaaagtagaaaattttctacagtctctaaaaatgtgattcaacatactgtgttgctatgatttgttctcagatattttgaccgcttctgtgttatcctttttttaataaatcttccttaaccaagagaaaaaatgtcagaagaaaggaagcaatttgcgaccaggaacaagctatattattacagatgtctttttaaccagaaaaagaagaacagaagaaacaggaaaaattttgcaaccaggacctagctttgtacatggtccaagcaaaaaatgaagctctagtggtgaaatggtattatatttatttatctatagatgatatttggtttgcaaggtgtctctttacacatttgatctcaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="25386" stop="27396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25686" g_stop="25828" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25829" i_stop="26549" i_length="721">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.241" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26550" g_stop="27096" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="690" r_length="547" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E377115" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25686" e_stop="25828"/>
          <exon e_start="26550" e_stop="27096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTTCTAATAGCGAGTCTAACGCTGTGGACAGATGCTCACTATTTGCAAAATTTTGCGAGTCTGGGTTAGGTCGTTTACATCTCCCTCATTTGGCGGATACAGCTTACAGTGCAATCTGGAGGGAGTCTGAATCATACGCTGTAAGTAGAAGATCTTTCATGACATTATTACTTTTAATTTCCTTGGAGCATTACTAGTTGTCTTCTGTACTTGAAAACTACAACATGAAGAAACCCAATACAGTCTAGCTGTACTTTAAAAACTGTTAGCGGTAAATCAAATGCAAATGCAATTTCAGAAACCTTGTTCTCTTTCCTTTACCTTTTTAAAACAAATTACAAGACAGTATATTAGTTCTGTTTTCCTTTGCTTATCGGCTGGCCAAGATTTGACCCGTTACTTTAATGAAGAGGTGTCCAGTTTGCTCAAACTGCAAGTCATTGGCAAAAACCTCTTGTGGATAGTTGGATGATTTTTAAATGGTCAACTATTTCTTCTCAGCATCAATTTGATTGACGTGATTTTAAAAGGTCAAAAATATCTTAATTAAGTTGAAGTACCACAATATTGGAGCCTTGTTGTTTATTAGTCGATGTAATAGCTTTCACTTAGGAATGGAGATCTGGTGGTTGTACATTATGTACAGCATTATTGTACTTTCAGATTCTCATGAGTTGAACTTACCAGTCCTAACTAGCTCAAAATATGTCTATGTGTGATCCTTGGTGGTTTTGTTCTCGAGAAAGTAAAGATGTCTGTTATTTCTTATATTCTTTTTGGGGCCTGATAAATAACCAAAAAGATTCCTTAAAAGGAACAAGAATCTTTCTTACTCTGATAAAAGTAATTAACGTTCCGCAGGAGTTAATAGGACCTTATTGGTCTCTTCGTGCTGCCCTGGGCCCCGTTTTGGAAACTCTTATACTGCTTGACCGATTGTTGCTCCTCCAGGAGTATGGCAGTGATCTGGAGGCAAGCCTCTTACCTATTTTTAATCCTGTGTTATCTCCGAGGAATATGGCTATCATAGCTAGGAAAATTAGAAAGTAGAAAATTTTCTACAGTCTCTAAAAATGTGATTCAACATACTGTGTTGCTATGATTTGTTCTCAGATATTTTGACCGCTTCTGTGTTATCCTTTTTTTAATAAATCTTCCTTAACCAAGAGAAAAAATGTCAGAAGAAAGGAAGCAATTTGCGACCAGGAACAAGCTATATTATTACAGATGTCTTTTTAACCAGAAAAAGAAGAACAGAAGAAACAGGAAAAATTTTGCAACCAGGACCTAGCTTTGTACATGGTCCAAGCAAAAAATGAAGCTCTAGTGGTGAAATGGTATTATATTTATTTATCTATAGATGATATTTGGTTTGCAAGGTGTCTCTTTACACATTTGATCTCAAGTT</genome_strand>
        <mrna_strand>AGAGTTCTAATAGCGAGTCTAACGCTGTGGACAGATGCTCACTATTTGCAAAATTTTGCGAGTCTGGGTTAGGTCGTTTACATCTCCCTCATTTGGCGGATACAGCTTACAGTGCAATCTGGAGGGAGTCTGAATCATACGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTAATAGGACCTTATTGGTCTCTTCGTGCTGCCCTGGGCCCCGTTTTGGAAACTCTTATACTGCTTGACCGATTGTTGCTCCTCCAGGAGTATGGCAGTGATCTGGAGGCAAGCCTCTTACCTATTTTTAATCCTGTGTTATCTCCGAGGAATATGGCTATCATAGCTAGGAAAATTAGAAAGTAGAAAATTTTCTACAGTCTCTAAAAATGTGATTCAACATACTGTGTTGCTATGATTTGTTCTCAGATATTTTGACCGCTTCTGTGTTATCCTTTTTTTAATAAATCTTCCTTAACCAAGAGAAAAAATGTCAGAAGAAAGGAAGCAATTTGCGACCAGGAACAAGCTATATTATTACAGATGTCTTTTTAACCAGAAAAAGAAGAACAGAAGAAACAGGAAAAATTTTGCAACCAGGACCTAGCTTTGTACATGGTCCAAGCAAAAAATGAAGCTCTAGTGGTGAAATGGTATTATATTTATTTATCTATAGATGATATTTGGTTTGCAAGGTGTCTCTTTACACATTTGATCTCAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E232079" ref_strand="+" ref_description="SGN-E232079 [cLED-7-L5]">
      <seq>agagttctaatagcgagtctaacgctgtggacagatgctcactatttgcaaaattttgcgagtctgggttaggtcgtttacatctccctcatttggcggatacagcttacagtgcaatctggagggagtctgaatcatacgctgagttaataggaccttattggtctcttcgtgctgccctgggccccgttttggaaactcttatactgcttgaccgattgttgctcctccaggagtatggcagtgatctggaggcaagcctcttacctatttttaatcctgtgttatctccgaggaatatggctatcatagctaggaaaattagaaagtagaaaattttctacagtctctaaaaatgtgattcaacatactgtgttgctatgatttgttctcagatattttgaccgcttctgtgttatcctttttttaataaatcttccttaaccaagagaaaaaatgtcagaagaaaggaagcaatttgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="25386" stop="27189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25686" g_stop="25828" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25829" i_stop="26549" i_length="721">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.241" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26550" g_stop="26889" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="483" r_length="340" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E232079" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25686" e_stop="25828"/>
          <exon e_start="26550" e_stop="26889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTTCTAATAGCGAGTCTAACGCTGTGGACAGATGCTCACTATTTGCAAAATTTTGCGAGTCTGGGTTAGGTCGTTTACATCTCCCTCATTTGGCGGATACAGCTTACAGTGCAATCTGGAGGGAGTCTGAATCATACGCTGTAAGTAGAAGATCTTTCATGACATTATTACTTTTAATTTCCTTGGAGCATTACTAGTTGTCTTCTGTACTTGAAAACTACAACATGAAGAAACCCAATACAGTCTAGCTGTACTTTAAAAACTGTTAGCGGTAAATCAAATGCAAATGCAATTTCAGAAACCTTGTTCTCTTTCCTTTACCTTTTTAAAACAAATTACAAGACAGTATATTAGTTCTGTTTTCCTTTGCTTATCGGCTGGCCAAGATTTGACCCGTTACTTTAATGAAGAGGTGTCCAGTTTGCTCAAACTGCAAGTCATTGGCAAAAACCTCTTGTGGATAGTTGGATGATTTTTAAATGGTCAACTATTTCTTCTCAGCATCAATTTGATTGACGTGATTTTAAAAGGTCAAAAATATCTTAATTAAGTTGAAGTACCACAATATTGGAGCCTTGTTGTTTATTAGTCGATGTAATAGCTTTCACTTAGGAATGGAGATCTGGTGGTTGTACATTATGTACAGCATTATTGTACTTTCAGATTCTCATGAGTTGAACTTACCAGTCCTAACTAGCTCAAAATATGTCTATGTGTGATCCTTGGTGGTTTTGTTCTCGAGAAAGTAAAGATGTCTGTTATTTCTTATATTCTTTTTGGGGCCTGATAAATAACCAAAAAGATTCCTTAAAAGGAACAAGAATCTTTCTTACTCTGATAAAAGTAATTAACGTTCCGCAGGAGTTAATAGGACCTTATTGGTCTCTTCGTGCTGCCCTGGGCCCCGTTTTGGAAACTCTTATACTGCTTGACCGATTGTTGCTCCTCCAGGAGTATGGCAGTGATCTGGAGGCAAGCCTCTTACCTATTTTTAATCCTGTGTTATCTCCGAGGAATATGGCTATCATAGCTAGGAAAATTAGAAAGTAGAAAATTTTCTACAGTCTCTAAAAATGTGATTCAACATACTGTGTTGCTATGATTTGTTCTCAGATATTTTGACCGCTTCTGTGTTATCCTTTTTTTAATAAATCTTCCTTAACCAAGAGAAAAAATGTCAGAAGAAAGGAAGCAATTTGCG</genome_strand>
        <mrna_strand>AGAGTTCTAATAGCGAGTCTAACGCTGTGGACAGATGCTCACTATTTGCAAAATTTTGCGAGTCTGGGTTAGGTCGTTTACATCTCCCTCATTTGGCGGATACAGCTTACAGTGCAATCTGGAGGGAGTCTGAATCATACGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTAATAGGACCTTATTGGTCTCTTCGTGCTGCCCTGGGCCCCGTTTTGGAAACTCTTATACTGCTTGACCGATTGTTGCTCCTCCAGGAGTATGGCAGTGATCTGGAGGCAAGCCTCTTACCTATTTTTAATCCTGTGTTATCTCCGAGGAATATGGCTATCATAGCTAGGAAAATTAGAAAGTAGAAAATTTTCTACAGTCTCTAAAAATGTGATTCAACATACTGTGTTGCTATGATTTGTTCTCAGATATTTTGACCGCTTCTGTGTTATCCTTTTTTTAATAAATCTTCCTTAACCAAGAGAAAAAATGTCAGAAGAAAGGAAGCAATTTGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240448" ref_strand="+" ref_description="SGN-E240448 [cLED-21-E9]">
      <seq>cgagtctaacgctgtggacagatgctcactatttgcaaaattttgcgagtctgggttaggtcgtttacatctccctcatttggcggatacagcttacagtgcaatctggagggagtctgaatcatacgctgagttaataggaccttattggtctcttcgtgctgccctgggccccgttttggaaactcttatactgcttgaccgattgttgctcctccaggagtatggcagtgatctggaggcaagcctcttacctatttttaatcctgtgttatctccgaggaatatggctatcatagctaggaaaattagaaagtagaaaattttctacagtctctaaaaatgtgattcaacatactgtgttgctatgatttgttctcagatattttgaccgcttctgtgttatcctttttttaataaatcttccttaaccaagagaaaaaatgtcagaagaaaggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="25399" stop="27180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25699" g_stop="25828" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25829" i_stop="26549" i_length="721">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.241" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26550" g_stop="26880" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="461" r_length="331" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E240448" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25699" e_stop="25828"/>
          <exon e_start="26550" e_stop="26880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGTCTAACGCTGTGGACAGATGCTCACTATTTGCAAAATTTTGCGAGTCTGGGTTAGGTCGTTTACATCTCCCTCATTTGGCGGATACAGCTTACAGTGCAATCTGGAGGGAGTCTGAATCATACGCTGTAAGTAGAAGATCTTTCATGACATTATTACTTTTAATTTCCTTGGAGCATTACTAGTTGTCTTCTGTACTTGAAAACTACAACATGAAGAAACCCAATACAGTCTAGCTGTACTTTAAAAACTGTTAGCGGTAAATCAAATGCAAATGCAATTTCAGAAACCTTGTTCTCTTTCCTTTACCTTTTTAAAACAAATTACAAGACAGTATATTAGTTCTGTTTTCCTTTGCTTATCGGCTGGCCAAGATTTGACCCGTTACTTTAATGAAGAGGTGTCCAGTTTGCTCAAACTGCAAGTCATTGGCAAAAACCTCTTGTGGATAGTTGGATGATTTTTAAATGGTCAACTATTTCTTCTCAGCATCAATTTGATTGACGTGATTTTAAAAGGTCAAAAATATCTTAATTAAGTTGAAGTACCACAATATTGGAGCCTTGTTGTTTATTAGTCGATGTAATAGCTTTCACTTAGGAATGGAGATCTGGTGGTTGTACATTATGTACAGCATTATTGTACTTTCAGATTCTCATGAGTTGAACTTACCAGTCCTAACTAGCTCAAAATATGTCTATGTGTGATCCTTGGTGGTTTTGTTCTCGAGAAAGTAAAGATGTCTGTTATTTCTTATATTCTTTTTGGGGCCTGATAAATAACCAAAAAGATTCCTTAAAAGGAACAAGAATCTTTCTTACTCTGATAAAAGTAATTAACGTTCCGCAGGAGTTAATAGGACCTTATTGGTCTCTTCGTGCTGCCCTGGGCCCCGTTTTGGAAACTCTTATACTGCTTGACCGATTGTTGCTCCTCCAGGAGTATGGCAGTGATCTGGAGGCAAGCCTCTTACCTATTTTTAATCCTGTGTTATCTCCGAGGAATATGGCTATCATAGCTAGGAAAATTAGAAAGTAGAAAATTTTCTACAGTCTCTAAAAATGTGATTCAACATACTGTGTTGCTATGATTTGTTCTCAGATATTTTGACCGCTTCTGTGTTATCCTTTTTTTAATAAATCTTCCTTAACCAAGAGAAAAAATGTCAGAAGAAAGGAAG</genome_strand>
        <mrna_strand>CGAGTCTAACGCTGTGGACAGATGCTCACTATTTGCAAAATTTTGCGAGTCTGGGTTAGGTCGTTTACATCTCCCTCATTTGGCGGATACAGCTTACAGTGCAATCTGGAGGGAGTCTGAATCATACGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTAATAGGACCTTATTGGTCTCTTCGTGCTGCCCTGGGCCCCGTTTTGGAAACTCTTATACTGCTTGACCGATTGTTGCTCCTCCAGGAGTATGGCAGTGATCTGGAGGCAAGCCTCTTACCTATTTTTAATCCTGTGTTATCTCCGAGGAATATGGCTATCATAGCTAGGAAAATTAGAAAGTAGAAAATTTTCTACAGTCTCTAAAAATGTGATTCAACATACTGTGTTGCTATGATTTGTTCTCAGATATTTTGACCGCTTCTGTGTTATCCTTTTTTTAATAAATCTTCCTTAACCAAGAGAAAAAATGTCAGAAGAAAGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E377114" ref_strand="+" ref_description="SGN-E377114 [TUS-21-A17](-)">
      <seq>acagtctctaaaaatggtgattcaacatactgtgttgctatgatttgttctcagatattttgaccgcttctgtgttatcctttttttaataaatcttccttaaccaaaagaaaaaatgtcagaagaaaggaagcaatttgcgaccaggaacaagctatattattacaaatgtctttttaaccagaaaaagaagaacagaagaaacaggaaaaattttgcaaccaggacctagctttgtacatggtccaagcaaaaaatgaagctttagtggtgaaatggtattatatttatttatctataaatgatatttggtttgcaaggtgtttctttacacatttgatttcaagtttatatactgctgtcttttttcaaggtgagaagacaagcccaaaaatgagaatgtggttatcaattgaaatatatatccaacctattgctaatttaaatgttggtttcacattttgactactcagggtttttatgattatgatattgtcctttattcactttgggatgtaatgtcatgagaaattgtcctttttaatatataagttgtggagggttgtgtcccctgtcctatgaagtattcaaggcccatagcccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="26449" stop="55628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26749" g_stop="27358" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="611" r_length="611" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27359" i_stop="27629" i_length="271">
            <donor d_prob="0.984" d_score="0.82"/>
            <acceptor a_prob="0.322" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27630" g_stop="27658" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="640" r_length="29" r_score="0.448"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E377114" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26749" e_stop="27358"/>
          <exon e_start="27630" e_stop="27658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTCTCTAAAAAT-GTGATTCAACATACTGTGTTGCTATGATTTGTTCTCAGATATTTTGACCGCTTCTGTGTTATCCTTTTTTTAATAAATCTTCCTTAACCAAGAGAAAAAATGTCAGAAGAAAGGAAGCAATTTGCGACCAGGAACAAGCTATATTATTACAGATGTCTTTTTAACCAGAAAAAGAAGAACAGAAGAAACAGGAAAAATTTTGCAACCAGGACCTAGCTTTGTACATGGTCCAAGCAAAAAATGAAGCTCTAGTGGTGAAATGGTATTATATTTATTTATCTATAGATGATATTTGGTTTGCAAGGTGTCTCTTTACACATTTGATCTCAAGTTTATATACTGCTGTCTTTTCTCAAGGTGAGAAGACAAGCCCAAGAATGAGAATGTGGTTATCAATTGAAATATATATCCAACCTATTGCTAATTTAAATGTTGGTTTCACATTCTGACTACTCAGGGTTCTTATGATTATGATATTGTCCTTTATTCACTTTGGGATGTAATGTCATGAGAAATTGTCCTTTTTAATATATAAGTTGTGGAGGGTTGTGTCCACTGTCCTATGAAGTATTCAAGGACAATAGACAAATGACAGGTGATGACATGAACTTTAAGCTAATTACACATTTTATATTATGTTATTCTTGCTTCCTTAGAGTGATTTCAAGTTCCTCGCAGATAACTCGTTCTTGTATTTATATGTTATTATTACATAAGTGTCTGGATTGTGGTGTATGGTAATCGTGCTGTTGATTAGTCTATGTAAAGGCTGAAATAGAAGCTTAGTTAGTTGCAACAAACTATAAAGTGCATTGTTTATCATGATTACCATTGCTAAATAGAATGTAGTGCAGGTTTACCTGCAGGAGAGAATGACTTGCAAAATCTTTAAAGA</genome_strand>
        <mrna_strand>ACAGTCTCTAAAAATGGTGATTCAACATACTGTGTTGCTATGATTTGTTCTCAGATATTTTGACCGCTTCTGTGTTATCCTTTTTTTAATAAATCTTCCTTAACCAAAAGAAAAAATGTCAGAAGAAAGGAAGCAATTTGCGACCAGGAACAAGCTATATTATTACAAATGTCTTTTTAACCAGAAAAAGAAGAACAGAAGAAACAGGAAAAATTTTGCAACCAGGACCTAGCTTTGTACATGGTCCAAGCAAAAAATGAAGCTTTAGTGGTGAAATGGTATTATATTTATTTATCTATAAATGATATTTGGTTTGCAAGGTGTTTCTTTACACATTTGATTTCAAGTTTATATACTGCTGTCTTTTTTCAAGGTGAGAAGACAAGCCCAAAAATGAGAATGTGGTTATCAATTGAAATATATATCCAACCTATTGCTAATTTAAATGTTGGTTTCACATTTTGACTACTCAGGGTTTTTATGATTATGATATTGTCCTTTATTCACTTTGGGATGTAATGTCATGAGAAATTGTCCTTTTTAATATATAAGTTGTGGAGGGTTGTGTCCCCTGTCCTATGAAGTATTCAAGGCCCATAGCCCAAAAAAAA...............................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271645" ref_strand="+" ref_description="SGN-E271645 [cLEM-23-M3]">
      <seq>gattagtcaatccaaaatttttccctaaaaggaaaacctatttatgttaagaaattatggtaaataaaatccaacaaatctcctcccccttggcctgtatttctgaccaaaataaatttctccacattcttcatttaatcttcaacaacttgcttctcttcttcttaatctcctttgtaaaatttatgtctcaaccatagaaaacctctctgaaacaatttctccaacaaaatcttcattactgtcaaaaagattgcggctagaacctaccacctgtcaagatgaaccaccaccctctttctaacctggtccaataatcgattatcgaaccactgaacctgacctctgtcattaaatggctctaatacccacttgttaggatcgaaataagcaggtgtaaatgcggaagctagcaaagcaaacttcgaaagaccacgagtaagaagacaacgagaaatataccaaaagacaccaaagatttaacgtggttcggtcaatcgacctacgttcacaaaggagatgagcaatccactataaatatgagagtacaatatacagagagaaacaacatcaaccaattcattcggaatatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="29963" stop="31147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30263" g_stop="30847" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="595" r_length="595" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E271645" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30263" e_stop="30847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTAGTCAATCCAAAATTTTTCCCTAAAAGGAAAACCTATTTATGTTAAGAAATTATGGTAAATAAAATCCAACAAATCTCCTCCCCCTTGGCCTGTATTTCTGA-CAAAATAAATTTCTCCACATTCTTCATTTAATCTTCAACAACTTGCTTCTCTTCTTCTTAATCTCCTTTGTAAAATTTATGTCTCAA-CATAGAAAACCTCTCTGAAACAATTTCTCCAACAAAATCTTCATTACTGTCAAAAAGATTGCGGCTAGAA-CTA-CACCTGTCAAGATGAA-CA-CA-CCTCTTTCTAACCTGGTCCAATAATCGATTATCGAACCACTGAACCTGA-CTCTGTCATTAAATGGCTCTAATA-CCACTTGTTAGGATCGAAATAAGCAGGTGTAAATGCGGAAGCTAGCAAAGCAAACTTCGAAAGACCACGAGTAAGAAGACAACGAGAAATATACCAAAAGACA-CAAAGATTTAACGTGGTTCGGTCAATCGACCTACGTTCACAAAGGAGATGAGCAATCCACTATAAATATGAGAGTACAATATACAGAGAGAAACAACATCAACCAATTCATTCGGAATATATG</genome_strand>
        <mrna_strand>GATTAGTCAATCCAAAATTTTTCCCTAAAAGGAAAACCTATTTATGTTAAGAAATTATGGTAAATAAAATCCAACAAATCTCCTCCCCCTTGGCCTGTATTTCTGACCAAAATAAATTTCTCCACATTCTTCATTTAATCTTCAACAACTTGCTTCTCTTCTTCTTAATCTCCTTTGTAAAATTTATGTCTCAACCATAGAAAACCTCTCTGAAACAATTTCTCCAACAAAATCTTCATTACTGTCAAAAAGATTGCGGCTAGAACCTACCACCTGTCAAGATGAACCACCACCCTCTTTCTAACCTGGTCCAATAATCGATTATCGAACCACTGAACCTGACCTCTGTCATTAAATGGCTCTAATACCCACTTGTTAGGATCGAAATAAGCAGGTGTAAATGCGGAAGCTAGCAAAGCAAACTTCGAAAGACCACGAGTAAGAAGACAACGAGAAATATACCAAAAGACACCAAAGATTTAACGTGGTTCGGTCAATCGACCTACGTTCACAAAGGAGATGAGCAATCCACTATAAATATGAGAGTACAATATACAGAGAGAAACAACATCAACCAATTCATTCGGAATATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395597" ref_strand="+" ref_description="SGN-E395597 [TUS-16-F22]">
      <seq>ttttccttttactatattctaaaaatatgacacataatattttaagtactatattaagaaataaaattagtttgtcttcttaaactcaagggtcgttgttggatgctttttacactattatcttaattttaaaattctctttttatttttgtgatacacttttattagctagccaccaaataaccaaaatatcacgatatatataaatttattcaaaataatttctattatattttatatattccaaaacttttcatttttttttataaattttgtgtctagtcaacatgaatacatataactttttcagtaagttttattaaatacgattatatagatcaaaaaagaaattttttattaaattttatttcagttcaaaatagcgtaatttaaaataatattgaaattagccatgggactataataactagtgcttatatatagatgtagtagagtaccattttagtgatgttaatagggaaatatttttatcaaccacctccccttggactttgatacacttaaatctcctctttcttttcatttctcttcaaaatgagtaacaacaacagcttgagcatggtggaatccaaattaccaccaggatttagattccatccaagagatgaagaacttatttgtgattacttaatgaagaaagttgatcaacaatccgaatatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="34667" stop="35949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34967" g_stop="35649" g_length="683"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="683" r_length="683" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E395597" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34967" e_stop="35649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCTTTTACTATATTCTAAAAATATGACACATAATATTTTAAGTACTATATTAAGAAATAAAATTAGTTTGTCTTCTTAAACTCAAGGGTCGTTGTTGGATGCTTTTTACACTATTATCTTAATTTTAAAATTCTCTTTTTATTTTTGTGATACACTTTTATTAGCTAGCCACCAAATAACCAAAATATCACGATATATATAAATTTATTCAAAATAATTTCTATTATATTTTATATATTCCAAAACTTTTCATTTTTTTTTATAAATTTTGTGTCTAGTCAACATGAATACATATAACTTTTTCAGTAAGTTTTATTAAATACGATTATATAGATCAAAAAAGAAATTTTTTATTAAATTTTATTTCAGTTCAAAATAGCGTAATTTAAAATAATATTGAAATTAGCCATGGGACTATAATAACTAGTGCTTATATATAGATGTAGTAGAGTACCATTTTAGTGATGTTAATAGGGAAATATTTTTATCAACCACCTCCCCTTGGACTTTGATACACTTAAATCTCCTCTTTCTTTTCATTTCTCTTCAAAATGAGTAACAACAACAGCTTGAGCATGGTGGAATCCAAATTACCACCAGGATTTAGATTCCATCCAAGAGATGAAGAACTTATTTGTGATTACTTAATGAAGAAAGTTGATCAACAATCCGAATATCA</genome_strand>
        <mrna_strand>TTTTCCTTTTACTATATTCTAAAAATATGACACATAATATTTTAAGTACTATATTAAGAAATAAAATTAGTTTGTCTTCTTAAACTCAAGGGTCGTTGTTGGATGCTTTTTACACTATTATCTTAATTTTAAAATTCTCTTTTTATTTTTGTGATACACTTTTATTAGCTAGCCACCAAATAACCAAAATATCACGATATATATAAATTTATTCAAAATAATTTCTATTATATTTTATATATTCCAAAACTTTTCATTTTTTTTTATAAATTTTGTGTCTAGTCAACATGAATACATATAACTTTTTCAGTAAGTTTTATTAAATACGATTATATAGATCAAAAAAGAAATTTTTTATTAAATTTTATTTCAGTTCAAAATAGCGTAATTTAAAATAATATTGAAATTAGCCATGGGACTATAATAACTAGTGCTTATATATAGATGTAGTAGAGTACCATTTTAGTGATGTTAATAGGGAAATATTTTTATCAACCACCTCCCCTTGGACTTTGATACACTTAAATCTCCTCTTTCTTTTCATTTCTCTTCAAAATGAGTAACAACAACAGCTTGAGCATGGTGGAATCCAAATTACCACCAGGATTTAGATTCCATCCAAGAGATGAAGAACTTATTTGTGATTACTTAATGAAGAAAGTTGATCAACAATCCGAATATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206012" ref_strand="+" ref_description="SGN-E206012 [cLEC-20-D21]">
      <seq>tttccttttactatattctaaaaatatgacacataatatgttaagtactatattaagaaataaaattagtttgtcttcttaaactcaagggtcgttgttggatgctttttacactattatcttaattttaaaattctctttttatttttgtgatacacttttattagctagccaccaaataaccaaaatatcacgatatatataaatttattcaaaataatttctattatattttatatattccaaaacttttcatttttttttataaattttgtgtctagtcaacatgaatacatataactttttcagtaagttttattaaatacgattatatagatcaaaaaagaaattttttattaaattttatttcagttcaaaatagcgtaatttaaaataatattgaaattagccatgggactataataactagtgcttatatatagatgtagtagagtaccattttagtgatgttaatagggaaatatttttatcaaccacctccccttggactttgatacacttaaatctcctctttcttttcatttctcttcaaaatgagtaacaacaacagcttgagcatggtggaatccaaattaccaccaggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="34668" stop="35873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34968" g_stop="35573" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="606" r_length="606" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E206012" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34968" e_stop="35573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCTTTTACTATATTCTAAAAATATGACACATAATATTTTAAGTACTATATTAAGAAATAAAATTAGTTTGTCTTCTTAAACTCAAGGGTCGTTGTTGGATGCTTTTTACACTATTATCTTAATTTTAAAATTCTCTTTTTATTTTTGTGATACACTTTTATTAGCTAGCCACCAAATAACCAAAATATCACGATATATATAAATTTATTCAAAATAATTTCTATTATATTTTATATATTCCAAAACTTTTCATTTTTTTTTATAAATTTTGTGTCTAGTCAACATGAATACATATAACTTTTTCAGTAAGTTTTATTAAATACGATTATATAGATCAAAAAAGAAATTTTTTATTAAATTTTATTTCAGTTCAAAATAGCGTAATTTAAAATAATATTGAAATTAGCCATGGGACTATAATAACTAGTGCTTATATATAGATGTAGTAGAGTACCATTTTAGTGATGTTAATAGGGAAATATTTTTATCAACCACCTCCCCTTGGACTTTGATACACTTAAATCTCCTCTTTCTTTTCATTTCTCTTCAAAATGAGTAACAACAACAGCTTGAGCATGGTGGAATCCAAATTACCACCAGGAT</genome_strand>
        <mrna_strand>TTTCCTTTTACTATATTCTAAAAATATGACACATAATATGTTAAGTACTATATTAAGAAATAAAATTAGTTTGTCTTCTTAAACTCAAGGGTCGTTGTTGGATGCTTTTTACACTATTATCTTAATTTTAAAATTCTCTTTTTATTTTTGTGATACACTTTTATTAGCTAGCCACCAAATAACCAAAATATCACGATATATATAAATTTATTCAAAATAATTTCTATTATATTTTATATATTCCAAAACTTTTCATTTTTTTTTATAAATTTTGTGTCTAGTCAACATGAATACATATAACTTTTTCAGTAAGTTTTATTAAATACGATTATATAGATCAAAAAAGAAATTTTTTATTAAATTTTATTTCAGTTCAAAATAGCGTAATTTAAAATAATATTGAAATTAGCCATGGGACTATAATAACTAGTGCTTATATATAGATGTAGTAGAGTACCATTTTAGTGATGTTAATAGGGAAATATTTTTATCAACCACCTCCCCTTGGACTTTGATACACTTAAATCTCCTCTTTCTTTTCATTTCTCTTCAAAATGAGTAACAACAACAGCTTGAGCATGGTGGAATCCAAATTACCACCAGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205337" ref_strand="+" ref_description="SGN-E205337 [cLEC-25-L13]">
      <seq>tttccttttactatattctaaaaatatgacacataatattttaagtactatattaagaaataaaattagtttgtcttcttaaactcaagggtcgttgttggatgctttttacactattatcttaattttaaaattctctttttatttttgtgatacacttttattagctagccaccaaataaccaaaatatcacgatatatataaatttattcaaaataatttctattatattttatatattccaaaacttttcatttttttttataaattttgtgtctagtcaacatgaatacatataactttttcagtaagttttattaaatacgattatatagatcaaaaaagaaattttttattaaattttatttcagttcaaaatagcgtaatttaaaataatattgaaattagccatgggactataataactagtgcttatatatagatgtagtagagtaccattttagtgatgttaatagggaaatatttttatcaaccacctccccttggactttgatacacttaaatctcctctttcttttcatttctcttcaaaatgagtaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="34668" stop="35830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34968" g_stop="35530" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="563" r_length="563" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E205337" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34968" e_stop="35530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCTTTTACTATATTCTAAAAATATGACACATAATATTTTAAGTACTATATTAAGAAATAAAATTAGTTTGTCTTCTTAAACTCAAGGGTCGTTGTTGGATGCTTTTTACACTATTATCTTAATTTTAAAATTCTCTTTTTATTTTTGTGATACACTTTTATTAGCTAGCCACCAAATAACCAAAATATCACGATATATATAAATTTATTCAAAATAATTTCTATTATATTTTATATATTCCAAAACTTTTCATTTTTTTTTATAAATTTTGTGTCTAGTCAACATGAATACATATAACTTTTTCAGTAAGTTTTATTAAATACGATTATATAGATCAAAAAAGAAATTTTTTATTAAATTTTATTTCAGTTCAAAATAGCGTAATTTAAAATAATATTGAAATTAGCCATGGGACTATAATAACTAGTGCTTATATATAGATGTAGTAGAGTACCATTTTAGTGATGTTAATAGGGAAATATTTTTATCAACCACCTCCCCTTGGACTTTGATACACTTAAATCTCCTCTTTCTTTTCATTTCTCTTCAAAATGAGTAAC</genome_strand>
        <mrna_strand>TTTCCTTTTACTATATTCTAAAAATATGACACATAATATTTTAAGTACTATATTAAGAAATAAAATTAGTTTGTCTTCTTAAACTCAAGGGTCGTTGTTGGATGCTTTTTACACTATTATCTTAATTTTAAAATTCTCTTTTTATTTTTGTGATACACTTTTATTAGCTAGCCACCAAATAACCAAAATATCACGATATATATAAATTTATTCAAAATAATTTCTATTATATTTTATATATTCCAAAACTTTTCATTTTTTTTTATAAATTTTGTGTCTAGTCAACATGAATACATATAACTTTTTCAGTAAGTTTTATTAAATACGATTATATAGATCAAAAAAGAAATTTTTTATTAAATTTTATTTCAGTTCAAAATAGCGTAATTTAAAATAATATTGAAATTAGCCATGGGACTATAATAACTAGTGCTTATATATAGATGTAGTAGAGTACCATTTTAGTGATGTTAATAGGGAAATATTTTTATCAACCACCTCCCCTTGGACTTTGATACACTTAAATCTCCTCTTTCTTTTCATTTCTCTTCAAAATGAGTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240291" ref_strand="+" ref_description="SGN-E240291 [cLED-25-N22]">
      <seq>gtaagttttattaaatacgattatatagatcaaaaaagaaattttttattaaattttatttcagttcaaaatagcgtaatttaaaataatattgaaattagccatgggactataataactagtgcttatatatagatgtagtagagtaccattttagtgatgttaatagggaaatatttttatcaaccacctccccttggactttgatacacttaaatctcctctttcttttcatttctcttcaaaatgagtaacaacaacagcttgagcatggtggaatccaaattaccaccaggatttagattccatccaagagatgaagaacttatttgtgattacttaatgaagaaagttgatcaacaatccgaatatcaacaacaataccctcttctcatagaagttgacctcaataaatctgaaccatgggaaattcctgaagtggcatgtgttggagggaaggagggtacttctacagccaacgtgaccgaaaatacgcgacggggctccgaacaaacagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="34976" stop="38109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35276" g_stop="35711" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35712" i_stop="37725" i_length="2014">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37726" g_stop="37809" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="519" r_length="83" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E240291" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35276" e_stop="35711"/>
          <exon e_start="37726" e_stop="37809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAGTTTTATTAAATACGATTATATAGATCAAAAAAGAAATTTTTTATTAAATTTTATTTCAGTTCAAAATAGCGTAATTTAAAATAATATTGAAATTAGCCATGGGACTATAATAACTAGTGCTTATATATAGATGTAGTAGAGTACCATTTTAGTGATGTTAATAGGGAAATATTTTTATCAACCACCTCCCCTTGGACTTTGATACACTTAAATCTCCTCTTTCTTTTCATTTCTCTTCAAAATGAGTAACAACAACAGCTTGAGCATGGTGGAATCCAAATTACCACCAGGATTTAGATTCCATCCAAGAGATGAAGAACTTATTTGTGATTACTTAATGAAGAAAGTTGATCAACAATCCGAATATCAACAACAATACCCTCTTCTCATAGAAGTTGACCTCAATAAATCTGAACCATGGGAAATTCCTGGTACGTTTATACTAATTACTTTTACAGAATCTTATAATTTTTTCGTAGATTCGAATTTATTTCATTCACATCTTTTAATTGATCACACACTTTTATGCTTATATATATGAATTTTTTGTTCGTGCCACATAGTTGGGTTGTGGATCAAGTGATAGCTAGCTAACGGATTGGTCCAAAGTTTTCATTTTTTTGGTTTCTATTTTTCGTGGATAAGAATATCATACACTGCTAATAATAATTGTGATTAGTCTTAATTAGAAAAAAAAAATTTATAATTAAAATTGTCTTCTTCGTTAGCATTAACACTTACCAATTTTAATTTTCTTTATGCTTATTCGTTTGTTCACACTGCGTATGTTAAACGCTCTCAAAGTATTTCTACAATATAGCTTGACTTTCCTGTCTATAACCCAAAGTCTTTAATTTATATTTTCCAAAATAAGTAACCACAGAACATTTATTACCATGGTCCTCCTGCTTTATTATTACTTTTTTTAATAAAAGAAATTAACCATCACATAATAATAATAAACACTTCTCGCTAAAAAATTATATTAAATTTACAAAATTAATTATTTTTATGATTCTCTTTGAGTTGTATTTGTATATGTGAATGATATATGAGATATATACGAATTAATGGTTCTCATAAGGTTTCTCATTCAATTAACTTTTGTAGAAATTGACAGTATTGGCATATTGTGTTGAACCAAAAGATGGTGAAAGCGATAGAGATTAATGCAAATATTGATCAATTAACTTACAACATGGCATATATATCTCTTAAGTGACTTGTGTCGACCACACGCGTGTACATTTATACTCCAATTTAGACAAAATTTAAGTACCATTAATTCTGGTCATAACTTTACCCCGTTTAATTTTAAAGCTATCTTGTCGACATCCTCGATTTTTCTTTTGCCATTAAGAGTGTCTCGATCAGTTTATATCTATCTCGATTAAATTTATTGGATATGTATCTTCAGAGATGGATTAGGGGTGGTAAAAGCGGATTTTCAAGAATTCAATTACTTTTGTGTATGATCGTATATTTATATTAAGAAATATTTTAAATATATTAAAGAAACATTTGTCGAGAATACAATAACAAAGTAGACACTTGGTTCCATTCCTCTTCTTTTTTTCATACTCTACCCATCGATCAGGAGGATCAATAGTGTTCTCACTTATTCTTTTGCATTAATGGTGGGGTATGATTCCGCTTATACACGTACAATAAAATTTTACTTATTTTAATTTTTAAAATCACTAGCTATAAACTCGTTATAAACATCAAAATGTGGATTGACATTTGTATTTTTCCAATACATATATAAATAAAGATAATAGATATCTAATGAAATTAATCGAGGTATTTATGATAAATTTTGGAGATAAGCAAATATATCTCCAATGAAATTAATTGAGCAAAAATTGATCACCTAGCTAGTAATTTTTTGGGGTCAATTTAATCCCTTTATTGTAGGAATATAATTCTTTCTTTTACATATCTATTTTCAAAGGAACAGTAATATACACGCACTATACATGTAGGTTCTTTGAACTTCAAATTTCCCCATCAACATCTTTTACCTAAGCCATTTGCATAAATATGGCCCTCCAATAATTAATTATCTCCATTTTTGGATAGAGATTTTAGCACTTAACCCATGCATAAAAGTTTAGGCTATTTTTTCAAAAATAAAACAGGTCCCCTTCCCTTTTTATCATCATCTTCTTAATTTTCGATAATAATACTATGAAATTGACATATTCCTTTTTCCTTTCATTTTCTCATCCTTTTATTATTTGTTTCTTATGCTACTCAATCCTATCTTCTTATGATGCATGTCACGTCGAAACTTACTATGATTTTCTAGAAACAATCAATCAATATTGAACTATGTAATCATCTCATTTAGACAAAGATCATATCTTTTATTATTACCATTGAATTGTGTAGTACCTAAGCTAAAATTAGTTACTTAATCATAACGTTATATATTATTTACAGAAGTGGCATGTGTTGGAGGGAAGGAGTGGTACTTCTACAGCCAACGTGACCGAAAATACGCGACGGGGCTCCGAACAAACAGAG</genome_strand>
        <mrna_strand>GTAAGTTTTATTAAATACGATTATATAGATCAAAAAAGAAATTTTTTATTAAATTTTATTTCAGTTCAAAATAGCGTAATTTAAAATAATATTGAAATTAGCCATGGGACTATAATAACTAGTGCTTATATATAGATGTAGTAGAGTACCATTTTAGTGATGTTAATAGGGAAATATTTTTATCAACCACCTCCCCTTGGACTTTGATACACTTAAATCTCCTCTTTCTTTTCATTTCTCTTCAAAATGAGTAACAACAACAGCTTGAGCATGGTGGAATCCAAATTACCACCAGGATTTAGATTCCATCCAAGAGATGAAGAACTTATTTGTGATTACTTAATGAAGAAAGTTGATCAACAATCCGAATATCAACAACAATACCCTCTTCTCATAGAAGTTGACCTCAATAAATCTGAACCATGGGAAATTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGGCATGTGTTGGAGGGAAGGAG-GGTACTTCTACAGCCAACGTGACCGAAAATACGCGACGGGGCTCCGAACAAACAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200915" ref_strand="+" ref_description="SGN-E200915 [cLEC-5-O20]">
      <seq>acacttaaatctcctctttcttttcatttctcttcaaaatgagtaacaacaacagcttgagcatggtggaatccaaattaccaccaggatttagattccatccaagagatgaagaacttatttgtgattacttaatgaagaaagttgatcaacaatccgaatatcaacaacaataccctcttctcatagaagttgacctcaataaatctgaaccatgggaaattcctgaagtggcatgtgttggagggaaggagtggtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="35184" stop="38058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35484" g_stop="35711" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35712" i_stop="37725" i_length="2014">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37726" g_stop="37758" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="261" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E200915" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>261</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35484" e_stop="35711"/>
          <exon e_start="37726" e_stop="37758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTTAAATCTCCTCTTTCTTTTCATTTCTCTTCAAAATGAGTAACAACAACAGCTTGAGCATGGTGGAATCCAAATTACCACCAGGATTTAGATTCCATCCAAGAGATGAAGAACTTATTTGTGATTACTTAATGAAGAAAGTTGATCAACAATCCGAATATCAACAACAATACCCTCTTCTCATAGAAGTTGACCTCAATAAATCTGAACCATGGGAAATTCCTGGTACGTTTATACTAATTACTTTTACAGAATCTTATAATTTTTTCGTAGATTCGAATTTATTTCATTCACATCTTTTAATTGATCACACACTTTTATGCTTATATATATGAATTTTTTGTTCGTGCCACATAGTTGGGTTGTGGATCAAGTGATAGCTAGCTAACGGATTGGTCCAAAGTTTTCATTTTTTTGGTTTCTATTTTTCGTGGATAAGAATATCATACACTGCTAATAATAATTGTGATTAGTCTTAATTAGAAAAAAAAAATTTATAATTAAAATTGTCTTCTTCGTTAGCATTAACACTTACCAATTTTAATTTTCTTTATGCTTATTCGTTTGTTCACACTGCGTATGTTAAACGCTCTCAAAGTATTTCTACAATATAGCTTGACTTTCCTGTCTATAACCCAAAGTCTTTAATTTATATTTTCCAAAATAAGTAACCACAGAACATTTATTACCATGGTCCTCCTGCTTTATTATTACTTTTTTTAATAAAAGAAATTAACCATCACATAATAATAATAAACACTTCTCGCTAAAAAATTATATTAAATTTACAAAATTAATTATTTTTATGATTCTCTTTGAGTTGTATTTGTATATGTGAATGATATATGAGATATATACGAATTAATGGTTCTCATAAGGTTTCTCATTCAATTAACTTTTGTAGAAATTGACAGTATTGGCATATTGTGTTGAACCAAAAGATGGTGAAAGCGATAGAGATTAATGCAAATATTGATCAATTAACTTACAACATGGCATATATATCTCTTAAGTGACTTGTGTCGACCACACGCGTGTACATTTATACTCCAATTTAGACAAAATTTAAGTACCATTAATTCTGGTCATAACTTTACCCCGTTTAATTTTAAAGCTATCTTGTCGACATCCTCGATTTTTCTTTTGCCATTAAGAGTGTCTCGATCAGTTTATATCTATCTCGATTAAATTTATTGGATATGTATCTTCAGAGATGGATTAGGGGTGGTAAAAGCGGATTTTCAAGAATTCAATTACTTTTGTGTATGATCGTATATTTATATTAAGAAATATTTTAAATATATTAAAGAAACATTTGTCGAGAATACAATAACAAAGTAGACACTTGGTTCCATTCCTCTTCTTTTTTTCATACTCTACCCATCGATCAGGAGGATCAATAGTGTTCTCACTTATTCTTTTGCATTAATGGTGGGGTATGATTCCGCTTATACACGTACAATAAAATTTTACTTATTTTAATTTTTAAAATCACTAGCTATAAACTCGTTATAAACATCAAAATGTGGATTGACATTTGTATTTTTCCAATACATATATAAATAAAGATAATAGATATCTAATGAAATTAATCGAGGTATTTATGATAAATTTTGGAGATAAGCAAATATATCTCCAATGAAATTAATTGAGCAAAAATTGATCACCTAGCTAGTAATTTTTTGGGGTCAATTTAATCCCTTTATTGTAGGAATATAATTCTTTCTTTTACATATCTATTTTCAAAGGAACAGTAATATACACGCACTATACATGTAGGTTCTTTGAACTTCAAATTTCCCCATCAACATCTTTTACCTAAGCCATTTGCATAAATATGGCCCTCCAATAATTAATTATCTCCATTTTTGGATAGAGATTTTAGCACTTAACCCATGCATAAAAGTTTAGGCTATTTTTTCAAAAATAAAACAGGTCCCCTTCCCTTTTTATCATCATCTTCTTAATTTTCGATAATAATACTATGAAATTGACATATTCCTTTTTCCTTTCATTTTCTCATCCTTTTATTATTTGTTTCTTATGCTACTCAATCCTATCTTCTTATGATGCATGTCACGTCGAAACTTACTATGATTTTCTAGAAACAATCAATCAATATTGAACTATGTAATCATCTCATTTAGACAAAGATCATATCTTTTATTATTACCATTGAATTGTGTAGTACCTAAGCTAAAATTAGTTACTTAATCATAACGTTATATATTATTTACAGAAGTGGCATGTGTTGGAGGGAAGGAGTGGTACT</genome_strand>
        <mrna_strand>ACACTTAAATCTCCTCTTTCTTTTCATTTCTCTTCAAAATGAGTAACAACAACAGCTTGAGCATGGTGGAATCCAAATTACCACCAGGATTTAGATTCCATCCAAGAGATGAAGAACTTATTTGTGATTACTTAATGAAGAAAGTTGATCAACAATCCGAATATCAACAACAATACCCTCTTCTCATAGAAGTTGACCTCAATAAATCTGAACCATGGGAAATTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGGCATGTGTTGGAGGGAAGGAGTGGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367881" ref_strand="-" ref_description="SGN-E367881 [TUS-22-C15](-)">
      <seq>ttttttttttttttttaaaatgatatttaacaacagcttgagcatggtggaatccaaattaccaccaggatttagattccatccaagagatgaagaacttatttgtgattacttaatgaagaaagttgatcaacaatccgaatatcaacatcaataccctcttctcatagaagttgacctcaataaatctgaaccatgggaaattcctgaagtggcatgtgttggagggaaggagtggtacttttacagccaacgtgaccgataatacgcgacggggcttcgaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="35231" stop="38103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35503" g_stop="35711" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35712" i_stop="37725" i_length="2014">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37726" g_stop="37803" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="287" r_length="78" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E367881" ref_strand="-">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>287</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367881" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="35503" e_stop="35711"/>
          <exon e_start="37726" e_stop="37803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCATTTCTCTTCAAAATGAGTAACAACAACAGCTTGAGCATGGTGGAATCCAAATTACCACCAGGATTTAGATTCCATCCAAGAGATGAAGAACTTATTTGTGATTACTTAATGAAGAAAGTTGATCAACAATCCGAATATCAACAACAATACCCTCTTCTCATAGAAGTTGACCTCAATAAATCTGAACCATGGGAAATTCCTGGTACGTTTATACTAATTACTTTTACAGAATCTTATAATTTTTTCGTAGATTCGAATTTATTTCATTCACATCTTTTAATTGATCACACACTTTTATGCTTATATATATGAATTTTTTGTTCGTGCCACATAGTTGGGTTGTGGATCAAGTGATAGCTAGCTAACGGATTGGTCCAAAGTTTTCATTTTTTTGGTTTCTATTTTTCGTGGATAAGAATATCATACACTGCTAATAATAATTGTGATTAGTCTTAATTAGAAAAAAAAAATTTATAATTAAAATTGTCTTCTTCGTTAGCATTAACACTTACCAATTTTAATTTTCTTTATGCTTATTCGTTTGTTCACACTGCGTATGTTAAACGCTCTCAAAGTATTTCTACAATATAGCTTGACTTTCCTGTCTATAACCCAAAGTCTTTAATTTATATTTTCCAAAATAAGTAACCACAGAACATTTATTACCATGGTCCTCCTGCTTTATTATTACTTTTTTTAATAAAAGAAATTAACCATCACATAATAATAATAAACACTTCTCGCTAAAAAATTATATTAAATTTACAAAATTAATTATTTTTATGATTCTCTTTGAGTTGTATTTGTATATGTGAATGATATATGAGATATATACGAATTAATGGTTCTCATAAGGTTTCTCATTCAATTAACTTTTGTAGAAATTGACAGTATTGGCATATTGTGTTGAACCAAAAGATGGTGAAAGCGATAGAGATTAATGCAAATATTGATCAATTAACTTACAACATGGCATATATATCTCTTAAGTGACTTGTGTCGACCACACGCGTGTACATTTATACTCCAATTTAGACAAAATTTAAGTACCATTAATTCTGGTCATAACTTTACCCCGTTTAATTTTAAAGCTATCTTGTCGACATCCTCGATTTTTCTTTTGCCATTAAGAGTGTCTCGATCAGTTTATATCTATCTCGATTAAATTTATTGGATATGTATCTTCAGAGATGGATTAGGGGTGGTAAAAGCGGATTTTCAAGAATTCAATTACTTTTGTGTATGATCGTATATTTATATTAAGAAATATTTTAAATATATTAAAGAAACATTTGTCGAGAATACAATAACAAAGTAGACACTTGGTTCCATTCCTCTTCTTTTTTTCATACTCTACCCATCGATCAGGAGGATCAATAGTGTTCTCACTTATTCTTTTGCATTAATGGTGGGGTATGATTCCGCTTATACACGTACAATAAAATTTTACTTATTTTAATTTTTAAAATCACTAGCTATAAACTCGTTATAAACATCAAAATGTGGATTGACATTTGTATTTTTCCAATACATATATAAATAAAGATAATAGATATCTAATGAAATTAATCGAGGTATTTATGATAAATTTTGGAGATAAGCAAATATATCTCCAATGAAATTAATTGAGCAAAAATTGATCACCTAGCTAGTAATTTTTTGGGGTCAATTTAATCCCTTTATTGTAGGAATATAATTCTTTCTTTTACATATCTATTTTCAAAGGAACAGTAATATACACGCACTATACATGTAGGTTCTTTGAACTTCAAATTTCCCCATCAACATCTTTTACCTAAGCCATTTGCATAAATATGGCCCTCCAATAATTAATTATCTCCATTTTTGGATAGAGATTTTAGCACTTAACCCATGCATAAAAGTTTAGGCTATTTTTTCAAAAATAAAACAGGTCCCCTTCCCTTTTTATCATCATCTTCTTAATTTTCGATAATAATACTATGAAATTGACATATTCCTTTTTCCTTTCATTTTCTCATCCTTTTATTATTTGTTTCTTATGCTACTCAATCCTATCTTCTTATGATGCATGTCACGTCGAAACTTACTATGATTTTCTAGAAACAATCAATCAATATTGAACTATGTAATCATCTCATTTAGACAAAGATCATATCTTTTATTATTACCATTGAATTGTGTAGTACCTAAGCTAAAATTAGTTACTTAATCATAACGTTATATATTATTTACAGAAGTGGCATGTGTTGGAGGGAAGGAGTGGTACTTCTACAGCCAACGTGACCGAAAATACGCGACGGGGCTCCGAACAA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTAAAATGATATTTAACAACAGCTTGAGCATGGTGGAATCCAAATTACCACCAGGATTTAGATTCCATCCAAGAGATGAAGAACTTATTTGTGATTACTTAATGAAGAAAGTTGATCAACAATCCGAATATCAACATCAATACCCTCTTCTCATAGAAGTTGACCTCAATAAATCTGAACCATGGGAAATTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGGCATGTGTTGGAGGGAAGGAGTGGTACTTTTACAGCCAACGTGACCGATAATACGCGACGGGGCTTCGAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E623199" ref_strand="+" ref_description="SGN-E623199 [88289]">
      <seq>tttttatcaaccacctcccttagactttcatacacttaattctcctctttatttttcttcttttttctttcatttcttttcaaaaatgagtaacaacagctgcttgagcatggtggaatccaaattaccaccaggatttagatttcatccaagagatgaagaacttatttgtgattacttaatgaagaaagttgatcaatccgcagaccaacaacaataccctcttctcatagaagttgacctcaataaatccgaaccttgggaaattcctgaagtggcatgtgttggaggcaaggagtggtacttctacagccaacgtgaccgaaaatacgcgacggggctccgaacaaacagagccaccgtatctggttactggaaagccaccggaaaagatcgtgcgataatcagaaaaggaagtcttgtaggaatgaggaaaaccctagttttctatcaaggaagagccccaaaaggaagaaaaagtgattgggttatgcatgaattccgccttgatgaaggtccccttagtaacattcgtcctcaaatttcttctctcaaggaggattgggtattatgccgagtatttcacaagaacaaggaattacttgctaccaagcaaggaattggaaacaacaacatatactacgataacgatacaataagttcttcatctctaccaccattaatggatcctttacattactttcgaccaaaataaccctaacaacaatatctatatgaatgaattatattatggagcaagtggccctgcttctcccattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="35152" stop="40114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35505" g_stop="35711" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="272" r_length="205" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35712" i_stop="37725" i_length="2014">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37726" g_stop="37997" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="542" r_length="270" r_score="0.897"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37998" i_stop="39468" i_length="1471">
            <donor d_prob="1.000" d_score="0.58"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39469" g_stop="39482" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="556" r_length="14" r_score="0.857"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39483" i_stop="39589" i_length="107">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39590" g_stop="39814" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="782" r_length="226" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E623199" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E623199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35505" e_stop="35711"/>
          <exon e_start="37726" e_stop="37997"/>
          <exon e_start="39469" e_stop="39482"/>
          <exon e_start="39590" e_stop="39814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATTTCTCTTC-AAAATGAGTAACAACAACAGCTTGAGCATGGTGGAATCCAAATTACCACCAGGATTTAGATTCCATCCAAGAGATGAAGAACTTATTTGTGATTACTTAATGAAGAAAGTTGATCAACAATCCGAATATCAACAACAATACCCTCTTCTCATAGAAGTTGACCTCAATAAATCTGAACCATGGGAAATTCCTGGTACGTTTATACTAATTACTTTTACAGAATCTTATAATTTTTTCGTAGATTCGAATTTATTTCATTCACATCTTTTAATTGATCACACACTTTTATGCTTATATATATGAATTTTTTGTTCGTGCCACATAGTTGGGTTGTGGATCAAGTGATAGCTAGCTAACGGATTGGTCCAAAGTTTTCATTTTTTTGGTTTCTATTTTTCGTGGATAAGAATATCATACACTGCTAATAATAATTGTGATTAGTCTTAATTAGAAAAAAAAAATTTATAATTAAAATTGTCTTCTTCGTTAGCATTAACACTTACCAATTTTAATTTTCTTTATGCTTATTCGTTTGTTCACACTGCGTATGTTAAACGCTCTCAAAGTATTTCTACAATATAGCTTGACTTTCCTGTCTATAACCCAAAGTCTTTAATTTATATTTTCCAAAATAAGTAACCACAGAACATTTATTACCATGGTCCTCCTGCTTTATTATTACTTTTTTTAATAAAAGAAATTAACCATCACATAATAATAATAAACACTTCTCGCTAAAAAATTATATTAAATTTACAAAATTAATTATTTTTATGATTCTCTTTGAGTTGTATTTGTATATGTGAATGATATATGAGATATATACGAATTAATGGTTCTCATAAGGTTTCTCATTCAATTAACTTTTGTAGAAATTGACAGTATTGGCATATTGTGTTGAACCAAAAGATGGTGAAAGCGATAGAGATTAATGCAAATATTGATCAATTAACTTACAACATGGCATATATATCTCTTAAGTGACTTGTGTCGACCACACGCGTGTACATTTATACTCCAATTTAGACAAAATTTAAGTACCATTAATTCTGGTCATAACTTTACCCCGTTTAATTTTAAAGCTATCTTGTCGACATCCTCGATTTTTCTTTTGCCATTAAGAGTGTCTCGATCAGTTTATATCTATCTCGATTAAATTTATTGGATATGTATCTTCAGAGATGGATTAGGGGTGGTAAAAGCGGATTTTCAAGAATTCAATTACTTTTGTGTATGATCGTATATTTATATTAAGAAATATTTTAAATATATTAAAGAAACATTTGTCGAGAATACAATAACAAAGTAGACACTTGGTTCCATTCCTCTTCTTTTTTTCATACTCTACCCATCGATCAGGAGGATCAATAGTGTTCTCACTTATTCTTTTGCATTAATGGTGGGGTATGATTCCGCTTATACACGTACAATAAAATTTTACTTATTTTAATTTTTAAAATCACTAGCTATAAACTCGTTATAAACATCAAAATGTGGATTGACATTTGTATTTTTCCAATACATATATAAATAAAGATAATAGATATCTAATGAAATTAATCGAGGTATTTATGATAAATTTTGGAGATAAGCAAATATATCTCCAATGAAATTAATTGAGCAAAAATTGATCACCTAGCTAGTAATTTTTTGGGGTCAATTTAATCCCTTTATTGTAGGAATATAATTCTTTCTTTTACATATCTATTTTCAAAGGAACAGTAATATACACGCACTATACATGTAGGTTCTTTGAACTTCAAATTTCCCCATCAACATCTTTTACCTAAGCCATTTGCATAAATATGGCCCTCCAATAATTAATTATCTCCATTTTTGGATAGAGATTTTAGCACTTAACCCATGCATAAAAGTTTAGGCTATTTTTTCAAAAATAAAACAGGTCCCCTTCCCTTTTTATCATCATCTTCTTAATTTTCGATAATAATACTATGAAATTGACATATTCCTTTTTCCTTTCATTTTCTCATCCTTTTATTATTTGTTTCTTATGCTACTCAATCCTATCTTCTTATGATGCATGTCACGTCGAAACTTACTATGATTTTCTAGAAACAATCAATCAATATTGAACTATGTAATCATCTCATTTAGACAAAGATCATATCTTTTATTATTACCATTGAATTGTGTAGTACCTAAGCTAAAATTAGTTACTTAATCATAACGTTATATATTATTTACAGAAGTGGCATGTGTTGGAGGGAAGGAGTGGTACTTCTACAGCCAACGTGACCGAAAATACGCGACGGGGCTCCGAACAAACAGAGCCACCGTATCTGGTTACTGGAAAGCCACCGGAAAAGATCGTGCAATCATCAGAAAAGGAAGTCTAGTAGGAATGAGAAAAACCCTAGTTTTCTATCAAGGGAGAGCCCCAAAAGGAAGAAAAAGTGACTGGGTTATGCATGAATTCCGCCTAGAACTTCCCATTCGTCCTCAAATTTCTTCTATCAAGGTACTCTACCATCTCCAATTGAGTTCTAAATTTAATATTTATATATTTGAACGCACATGTTTATATATACTAATAGAACATCGACTAATAAACCACAGATTTTTTTTTTTGGTAAGTTTTCATAAAATATCATTTACATGTGCAATTGATTTACTTTGGAGTATATATGCTTAGAGAATATTATATATATATATATATATCATATAATACATGCATAAAATTCTATATATATTAAACAAAAAAATTGTATATGTAAAAAAAAGGTAAACTAGTTCTTCTTTGGTCATACTGTCAATTACTTTTGCCGATAAATATGACGAATTGAAGCATTTAGGTCCATAAAAAGTTCATTAATTATTATATTATGAAAAAAAATATATCATAAAAACTATAAAATAAATAAAGTAGATAAAAGTAGTTTTCAATTGAGAGAACTGTCCATTCATATTTAAAAAAAAAAAATTATTTGAGAAATTGTGAAATAAGCATGAATTTAATTTGTCGTTATGAAAAATACAAGTATGTGGCTGTACATAATAAATGACAGTTCATATATATTTATGGCCCATGATAATGAACTTTTGGCTTAATTATCTAAATTATCCTTTTCTCTTGGCCTACTTATAATATAGTAATTGATTAATCCAATCGCTATAAATGCGGTTAAGTTCTTCTTGGAATCTTATTTTATATTCAACTGTAAACATCATTGGAAGTTTCCTCTATCATTTTAAGAATATGGTTTTATGAGTTATGACAAATATGTGAACTATTTTATCTTTTAAAAACTGTATTGGTAGTTGACCAACTTACAACTACTACCTTAAGTCATTTCACTTTTAGGAATTACATATTCACTAAATACAATAATAATAGTAATAATAATAAATATAGTGTAATCTTATGTGAAATTTGAAGAAGGTTGAATATATGTAGATTTAATCTCTATGTTTAGAAGATAGAGAAATTATTCTGCTCAATAGAGATATATCTAATACGGAAAAAAAAGAATATTTTTGACTAGGTATAAACTTTAAACGTTAATTGAAATTATATATAGAATAGGTAGTAGCTAGGAAATACAATAGAACATTATTGTTCTAATTTGATTAATGAATTTGATTCCTTGAAATCCTTGAAAGATTTGTAAACCAATTCATATACTATTATTAAATTATGTCAAATTTTGTGAGACATATCTAGCACAATTATTGTGATATAATATGTTACTAATCAGTGCTACAATGATAAGAAAAATATCTCATGATTCTTTCGTAATCTATGTTTAATCAGAATAAATTCCATTTCTCAATTATTATTTATTTAGATAACAACACAACCTAATTACCTAATCCCCTTGTCCTTGACCACGTCACGTTATTTCAGAAAAATAAACATTTTTTTTCTCATAAAAGAATCAATTACTTGGTGATCATGGATATTATTAAAATTCATTTAATATATATGGAACTTTTTTCTCTCAATTCGTTTAATTCATTTACGTTAATAGTGTAGTATATAGTACATTGATTATTATTATTATTATATTATATTATTAGCGTATAAAAATTGAACTTTTTTTAATGATACAGGAGGATTGGGTATTATGCCGAGTATTTCACAAGAAGAAGGAATTACTTGCTACAAAGCAAGAAATTGGAAGCAACAATATATACTACGATAACGATACAATAAGTTGTTCATCTCTACCACCATTAATGGATCC-TTACATTACTTTCGACCAAACAAACCCTAACAACAATAATATGAATATGAATGAATTATATTAT-GAGCAAGT-GCCCTGCTTCT-CCATTTTC</genome_strand>
        <mrna_strand>TTTCATTTCTTTTCAAAAATGAGTAACAACAGCTGCTTGAGCATGGTGGAATCCAAATTACCACCAGGATTTAGATTTCATCCAAGAGATGAAGAACTTATTTGTGATTACTTAATGAAGAAAGTTGAT---CAATCCGCAGACCAACAACAATACCCTCTTCTCATAGAAGTTGACCTCAATAAATCCGAACCTTGGGAAATTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGGCATGTGTTGGAGGCAAGGAGTGGTACTTCTACAGCCAACGTGACCGAAAATACGCGACGGGGCTCCGAACAAACAGAGCCACCGTATCTGGTTACTGGAAAGCCACCGGAAAAGATCGTGCGATAATCAGAAAAGGAAGTCTTGTAGGAATGAGGAAAACCCTAGTTTTCTATCAAGGAAGAGCCCCAAAAGGAAGAAAAAGTGATTGGGTTATGCATGAATTCCGCCTTGATGAAGGTCCCCTTAGT-AACATTCGTC-CTCAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTTCTCTCAAG...........................................................................................................GAGGATTGGGTATTATGCCGAGTATTTCACAAGAACAAGGAATTACTTGCTACCAAGCAAGGAATTGGAAACAACAACATATACTACGATAACGATACAATAAGTTCTTCATCTCTACCACCATTAATGGATCCTTTACATTACTTTCGACCAAAATAACCCTAACAACAAT-ATCT--ATATGAATGAATTATATTATGGAGCAAGTGGCCCTGCTTCTCCCATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E599486" ref_strand="+" ref_description="SGN-E599486 [52475]">
      <seq>ttatcaaccacctcccttagactttcatacacttaattctcctctttatttttcttcttttttctttcatttcttttcaaaaatgagtaacaacagctgcttgagcatggtggaatccaaattaccaccaggatttagatttcatccaagagatgaagaacttatttgtgattacttaatgaagaaagttgatcaatccgcagaccaacaacaataccctcttctcatagaagttgacctcaataaatccgaaccttgggaaattcctgaagtggcatgtgttggaggcaaggagtggtacttctacagccaacgtgaccgaaaatacgcgacggggctccgaacaaacagagccaccgtatctggttactggaaagccaccggaaaagatcgtgcgataatcagaaaaggaagtcttgtacggaatgaggaaaaccctagttttctatcaaggaagagccccaaaaggaagaaaaagtgattgggttatgcatgaattccgccttgatgaaggtccccttagtaacattcgtcctcaaatttcttctctcaaggaggattgggtattatgccgagtatttcacaagaacaaggaattacttgctaccaagcaaggaattggaaacaacaacatatactacgataacgatacaataagttcttcatctctaccaccattaatggatccttacattactttcgaccaataaaccctaacaacgatatcatatgaatgattatattatgagcaagtgccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="35155" stop="40091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35505" g_stop="35711" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="269" r_length="205" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35712" i_stop="37725" i_length="2014">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37726" g_stop="37997" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="540" r_length="271" r_score="0.890"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37998" i_stop="39468" i_length="1471">
            <donor d_prob="1.000" d_score="0.58"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39469" g_stop="39482" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="554" r_length="14" r_score="0.857"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39483" i_stop="39589" i_length="107">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39590" g_stop="39800" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="759" r_length="205" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E599486" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E599486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35505" e_stop="35711"/>
          <exon e_start="37726" e_stop="37997"/>
          <exon e_start="39469" e_stop="39482"/>
          <exon e_start="39590" e_stop="39800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATTTCTCTTC-AAAATGAGTAACAACAACAGCTTGAGCATGGTGGAATCCAAATTACCACCAGGATTTAGATTCCATCCAAGAGATGAAGAACTTATTTGTGATTACTTAATGAAGAAAGTTGATCAACAATCCGAATATCAACAACAATACCCTCTTCTCATAGAAGTTGACCTCAATAAATCTGAACCATGGGAAATTCCTGGTACGTTTATACTAATTACTTTTACAGAATCTTATAATTTTTTCGTAGATTCGAATTTATTTCATTCACATCTTTTAATTGATCACACACTTTTATGCTTATATATATGAATTTTTTGTTCGTGCCACATAGTTGGGTTGTGGATCAAGTGATAGCTAGCTAACGGATTGGTCCAAAGTTTTCATTTTTTTGGTTTCTATTTTTCGTGGATAAGAATATCATACACTGCTAATAATAATTGTGATTAGTCTTAATTAGAAAAAAAAAATTTATAATTAAAATTGTCTTCTTCGTTAGCATTAACACTTACCAATTTTAATTTTCTTTATGCTTATTCGTTTGTTCACACTGCGTATGTTAAACGCTCTCAAAGTATTTCTACAATATAGCTTGACTTTCCTGTCTATAACCCAAAGTCTTTAATTTATATTTTCCAAAATAAGTAACCACAGAACATTTATTACCATGGTCCTCCTGCTTTATTATTACTTTTTTTAATAAAAGAAATTAACCATCACATAATAATAATAAACACTTCTCGCTAAAAAATTATATTAAATTTACAAAATTAATTATTTTTATGATTCTCTTTGAGTTGTATTTGTATATGTGAATGATATATGAGATATATACGAATTAATGGTTCTCATAAGGTTTCTCATTCAATTAACTTTTGTAGAAATTGACAGTATTGGCATATTGTGTTGAACCAAAAGATGGTGAAAGCGATAGAGATTAATGCAAATATTGATCAATTAACTTACAACATGGCATATATATCTCTTAAGTGACTTGTGTCGACCACACGCGTGTACATTTATACTCCAATTTAGACAAAATTTAAGTACCATTAATTCTGGTCATAACTTTACCCCGTTTAATTTTAAAGCTATCTTGTCGACATCCTCGATTTTTCTTTTGCCATTAAGAGTGTCTCGATCAGTTTATATCTATCTCGATTAAATTTATTGGATATGTATCTTCAGAGATGGATTAGGGGTGGTAAAAGCGGATTTTCAAGAATTCAATTACTTTTGTGTATGATCGTATATTTATATTAAGAAATATTTTAAATATATTAAAGAAACATTTGTCGAGAATACAATAACAAAGTAGACACTTGGTTCCATTCCTCTTCTTTTTTTCATACTCTACCCATCGATCAGGAGGATCAATAGTGTTCTCACTTATTCTTTTGCATTAATGGTGGGGTATGATTCCGCTTATACACGTACAATAAAATTTTACTTATTTTAATTTTTAAAATCACTAGCTATAAACTCGTTATAAACATCAAAATGTGGATTGACATTTGTATTTTTCCAATACATATATAAATAAAGATAATAGATATCTAATGAAATTAATCGAGGTATTTATGATAAATTTTGGAGATAAGCAAATATATCTCCAATGAAATTAATTGAGCAAAAATTGATCACCTAGCTAGTAATTTTTTGGGGTCAATTTAATCCCTTTATTGTAGGAATATAATTCTTTCTTTTACATATCTATTTTCAAAGGAACAGTAATATACACGCACTATACATGTAGGTTCTTTGAACTTCAAATTTCCCCATCAACATCTTTTACCTAAGCCATTTGCATAAATATGGCCCTCCAATAATTAATTATCTCCATTTTTGGATAGAGATTTTAGCACTTAACCCATGCATAAAAGTTTAGGCTATTTTTTCAAAAATAAAACAGGTCCCCTTCCCTTTTTATCATCATCTTCTTAATTTTCGATAATAATACTATGAAATTGACATATTCCTTTTTCCTTTCATTTTCTCATCCTTTTATTATTTGTTTCTTATGCTACTCAATCCTATCTTCTTATGATGCATGTCACGTCGAAACTTACTATGATTTTCTAGAAACAATCAATCAATATTGAACTATGTAATCATCTCATTTAGACAAAGATCATATCTTTTATTATTACCATTGAATTGTGTAGTACCTAAGCTAAAATTAGTTACTTAATCATAACGTTATATATTATTTACAGAAGTGGCATGTGTTGGAGGGAAGGAGTGGTACTTCTACAGCCAACGTGACCGAAAATACGCGACGGGGCTCCGAACAAACAGAGCCACCGTATCTGGTTACTGGAAAGCCACCGGAAAAGATCGTGCAATCATCAGAAAAGGAAGTCTAGTA-GGAATGAGAAAAACCCTAGTTTTCTATCAAGGGAGAGCCCCAAAAGGAAGAAAAAGTGACTGGGTTATGCATGAATTCCGCCTAGAACTTCCCATTCGTCCTCAAATTTCTTCTATCAAGGTACTCTACCATCTCCAATTGAGTTCTAAATTTAATATTTATATATTTGAACGCACATGTTTATATATACTAATAGAACATCGACTAATAAACCACAGATTTTTTTTTTTGGTAAGTTTTCATAAAATATCATTTACATGTGCAATTGATTTACTTTGGAGTATATATGCTTAGAGAATATTATATATATATATATATATCATATAATACATGCATAAAATTCTATATATATTAAACAAAAAAATTGTATATGTAAAAAAAAGGTAAACTAGTTCTTCTTTGGTCATACTGTCAATTACTTTTGCCGATAAATATGACGAATTGAAGCATTTAGGTCCATAAAAAGTTCATTAATTATTATATTATGAAAAAAAATATATCATAAAAACTATAAAATAAATAAAGTAGATAAAAGTAGTTTTCAATTGAGAGAACTGTCCATTCATATTTAAAAAAAAAAAATTATTTGAGAAATTGTGAAATAAGCATGAATTTAATTTGTCGTTATGAAAAATACAAGTATGTGGCTGTACATAATAAATGACAGTTCATATATATTTATGGCCCATGATAATGAACTTTTGGCTTAATTATCTAAATTATCCTTTTCTCTTGGCCTACTTATAATATAGTAATTGATTAATCCAATCGCTATAAATGCGGTTAAGTTCTTCTTGGAATCTTATTTTATATTCAACTGTAAACATCATTGGAAGTTTCCTCTATCATTTTAAGAATATGGTTTTATGAGTTATGACAAATATGTGAACTATTTTATCTTTTAAAAACTGTATTGGTAGTTGACCAACTTACAACTACTACCTTAAGTCATTTCACTTTTAGGAATTACATATTCACTAAATACAATAATAATAGTAATAATAATAAATATAGTGTAATCTTATGTGAAATTTGAAGAAGGTTGAATATATGTAGATTTAATCTCTATGTTTAGAAGATAGAGAAATTATTCTGCTCAATAGAGATATATCTAATACGGAAAAAAAAGAATATTTTTGACTAGGTATAAACTTTAAACGTTAATTGAAATTATATATAGAATAGGTAGTAGCTAGGAAATACAATAGAACATTATTGTTCTAATTTGATTAATGAATTTGATTCCTTGAAATCCTTGAAAGATTTGTAAACCAATTCATATACTATTATTAAATTATGTCAAATTTTGTGAGACATATCTAGCACAATTATTGTGATATAATATGTTACTAATCAGTGCTACAATGATAAGAAAAATATCTCATGATTCTTTCGTAATCTATGTTTAATCAGAATAAATTCCATTTCTCAATTATTATTTATTTAGATAACAACACAACCTAATTACCTAATCCCCTTGTCCTTGACCACGTCACGTTATTTCAGAAAAATAAACATTTTTTTTCTCATAAAAGAATCAATTACTTGGTGATCATGGATATTATTAAAATTCATTTAATATATATGGAACTTTTTTCTCTCAATTCGTTTAATTCATTTACGTTAATAGTGTAGTATATAGTACATTGATTATTATTATTATTATATTATATTATTAGCGTATAAAAATTGAACTTTTTTTAATGATACAGGAGGATTGGGTATTATGCCGAGTATTTCACAAGAAGAAGGAATTACTTGCTACAAAGCAAGAAATTGGAAGCAACAATATATACTACGATAACGATACAATAAGTTGTTCATCTCTACCACCATTAATGGATCCTTACATTACTTTCGACCAAACAAACCCTAACAACAATAATATGAATATGAATGAATTATATTATGAGCAAGTGCCCT</genome_strand>
        <mrna_strand>TTTCATTTCTTTTCAAAAATGAGTAACAACAGCTGCTTGAGCATGGTGGAATCCAAATTACCACCAGGATTTAGATTTCATCCAAGAGATGAAGAACTTATTTGTGATTACTTAATGAAGAAAGTTGAT---CAATCCGCAGACCAACAACAATACCCTCTTCTCATAGAAGTTGACCTCAATAAATCCGAACCTTGGGAAATTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGGCATGTGTTGGAGGCAAGGAGTGGTACTTCTACAGCCAACGTGACCGAAAATACGCGACGGGGCTCCGAACAAACAGAGCCACCGTATCTGGTTACTGGAAAGCCACCGGAAAAGATCGTGCGATAATCAGAAAAGGAAGTCTTGTACGGAATGAGGAAAACCCTAGTTTTCTATCAAGGAAGAGCCCCAAAAGGAAGAAAAAGTGATTGGGTTATGCATGAATTCCGCCTTGATGAAGGTCCCCTTAGT-AACATTCGTC-CTCAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTTCTCTCAAG...........................................................................................................GAGGATTGGGTATTATGCCGAGTATTTCACAAGAACAAGGAATTACTTGCTACCAAGCAAGGAATTGGAAACAACAACATATACTACGATAACGATACAATAAGTTCTTCATCTCTACCACCATTAATGGATCCTTACATTACTTTCGACC-AATAAACCCTAACAAC---GATAT-CATATGAATG-ATTATATTATGAGCAAGTGCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E463786" ref_strand="+" ref_description="SGN-E463786 [cPRO-16-A15]">
      <seq>ctttcatacacttaattctcctctttcttttttctttcatttcttttcaaaaatgagtaacaacagcagcttgagcatggtggaatccaaattaccaccaggatttagatttcatccaagagatgaagaacttatttgtgattacttaatgaagaaagttgatcaatccacagaccaacaacaataccctcttctcatagaagttgacctcaataaatccgaaccttgggaaattcctgaagtggcatgtgttggaggcaaggattggtacttctacagccaacgtgaccgaaaatacgcgacggggctccgaacaaacagagccaccgtatctggttactggaaagccaccggaaaagatcgtgcaataatcagaaaaggaagtcttgtaggaatgagggaaaccctagttttctatcaaggaagagccccaaagggaagaaaaagtgattgcgttatgcatgaattccgccttgatgaaggtccccttagtaacattcgttctcaaatttcttctctcaaggaggattgggtattatgccgagtattttcacagaacaaggaattacttgctaccaagcagggaattggaagcacaacatatactacngatacgatacaataagttcttcatctttaccacattaatggatccttacattactttcgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="35193" stop="40039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35505" g_stop="35711" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="239" r_length="205" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35712" i_stop="37725" i_length="2014">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37726" g_stop="37997" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="509" r_length="270" r_score="0.886"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37998" i_stop="39468" i_length="1471">
            <donor d_prob="1.000" d_score="0.58"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39469" g_stop="39482" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="523" r_length="14" r_score="0.857"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39483" i_stop="39589" i_length="107">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39590" g_stop="39739" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="671" r_length="148" r_score="0.893"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E463786" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E463786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35505" e_stop="35711"/>
          <exon e_start="37726" e_stop="37997"/>
          <exon e_start="39469" e_stop="39482"/>
          <exon e_start="39590" e_stop="39739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATTTCTCTTCAAAA-TGAGTAACAACAACAGCTTGAGCATGGTGGAATCCAAATTACCACCAGGATTTAGATTCCATCCAAGAGATGAAGAACTTATTTGTGATTACTTAATGAAGAAAGTTGATCAACAATCCGAATATCAACAACAATACCCTCTTCTCATAGAAGTTGACCTCAATAAATCTGAACCATGGGAAATTCCTGGTACGTTTATACTAATTACTTTTACAGAATCTTATAATTTTTTCGTAGATTCGAATTTATTTCATTCACATCTTTTAATTGATCACACACTTTTATGCTTATATATATGAATTTTTTGTTCGTGCCACATAGTTGGGTTGTGGATCAAGTGATAGCTAGCTAACGGATTGGTCCAAAGTTTTCATTTTTTTGGTTTCTATTTTTCGTGGATAAGAATATCATACACTGCTAATAATAATTGTGATTAGTCTTAATTAGAAAAAAAAAATTTATAATTAAAATTGTCTTCTTCGTTAGCATTAACACTTACCAATTTTAATTTTCTTTATGCTTATTCGTTTGTTCACACTGCGTATGTTAAACGCTCTCAAAGTATTTCTACAATATAGCTTGACTTTCCTGTCTATAACCCAAAGTCTTTAATTTATATTTTCCAAAATAAGTAACCACAGAACATTTATTACCATGGTCCTCCTGCTTTATTATTACTTTTTTTAATAAAAGAAATTAACCATCACATAATAATAATAAACACTTCTCGCTAAAAAATTATATTAAATTTACAAAATTAATTATTTTTATGATTCTCTTTGAGTTGTATTTGTATATGTGAATGATATATGAGATATATACGAATTAATGGTTCTCATAAGGTTTCTCATTCAATTAACTTTTGTAGAAATTGACAGTATTGGCATATTGTGTTGAACCAAAAGATGGTGAAAGCGATAGAGATTAATGCAAATATTGATCAATTAACTTACAACATGGCATATATATCTCTTAAGTGACTTGTGTCGACCACACGCGTGTACATTTATACTCCAATTTAGACAAAATTTAAGTACCATTAATTCTGGTCATAACTTTACCCCGTTTAATTTTAAAGCTATCTTGTCGACATCCTCGATTTTTCTTTTGCCATTAAGAGTGTCTCGATCAGTTTATATCTATCTCGATTAAATTTATTGGATATGTATCTTCAGAGATGGATTAGGGGTGGTAAAAGCGGATTTTCAAGAATTCAATTACTTTTGTGTATGATCGTATATTTATATTAAGAAATATTTTAAATATATTAAAGAAACATTTGTCGAGAATACAATAACAAAGTAGACACTTGGTTCCATTCCTCTTCTTTTTTTCATACTCTACCCATCGATCAGGAGGATCAATAGTGTTCTCACTTATTCTTTTGCATTAATGGTGGGGTATGATTCCGCTTATACACGTACAATAAAATTTTACTTATTTTAATTTTTAAAATCACTAGCTATAAACTCGTTATAAACATCAAAATGTGGATTGACATTTGTATTTTTCCAATACATATATAAATAAAGATAATAGATATCTAATGAAATTAATCGAGGTATTTATGATAAATTTTGGAGATAAGCAAATATATCTCCAATGAAATTAATTGAGCAAAAATTGATCACCTAGCTAGTAATTTTTTGGGGTCAATTTAATCCCTTTATTGTAGGAATATAATTCTTTCTTTTACATATCTATTTTCAAAGGAACAGTAATATACACGCACTATACATGTAGGTTCTTTGAACTTCAAATTTCCCCATCAACATCTTTTACCTAAGCCATTTGCATAAATATGGCCCTCCAATAATTAATTATCTCCATTTTTGGATAGAGATTTTAGCACTTAACCCATGCATAAAAGTTTAGGCTATTTTTTCAAAAATAAAACAGGTCCCCTTCCCTTTTTATCATCATCTTCTTAATTTTCGATAATAATACTATGAAATTGACATATTCCTTTTTCCTTTCATTTTCTCATCCTTTTATTATTTGTTTCTTATGCTACTCAATCCTATCTTCTTATGATGCATGTCACGTCGAAACTTACTATGATTTTCTAGAAACAATCAATCAATATTGAACTATGTAATCATCTCATTTAGACAAAGATCATATCTTTTATTATTACCATTGAATTGTGTAGTACCTAAGCTAAAATTAGTTACTTAATCATAACGTTATATATTATTTACAGAAGTGGCATGTGTTGGAGGGAAGGAGTGGTACTTCTACAGCCAACGTGACCGAAAATACGCGACGGGGCTCCGAACAAACAGAGCCACCGTATCTGGTTACTGGAAAGCCACCGGAAAAGATCGTGCAATCATCAGAAAAGGAAGTCTAGTAGGAATGAGAAAAACCCTAGTTTTCTATCAAGGGAGAGCCCCAAAAGGAAGAAAAAGTGACTGGGTTATGCATGAATTCCGCCTAGAACTTCCCATTCGTCCTCAAATTTCTTCTATCAAGGTACTCTACCATCTCCAATTGAGTTCTAAATTTAATATTTATATATTTGAACGCACATGTTTATATATACTAATAGAACATCGACTAATAAACCACAGATTTTTTTTTTTGGTAAGTTTTCATAAAATATCATTTACATGTGCAATTGATTTACTTTGGAGTATATATGCTTAGAGAATATTATATATATATATATATATCATATAATACATGCATAAAATTCTATATATATTAAACAAAAAAATTGTATATGTAAAAAAAAGGTAAACTAGTTCTTCTTTGGTCATACTGTCAATTACTTTTGCCGATAAATATGACGAATTGAAGCATTTAGGTCCATAAAAAGTTCATTAATTATTATATTATGAAAAAAAATATATCATAAAAACTATAAAATAAATAAAGTAGATAAAAGTAGTTTTCAATTGAGAGAACTGTCCATTCATATTTAAAAAAAAAAAATTATTTGAGAAATTGTGAAATAAGCATGAATTTAATTTGTCGTTATGAAAAATACAAGTATGTGGCTGTACATAATAAATGACAGTTCATATATATTTATGGCCCATGATAATGAACTTTTGGCTTAATTATCTAAATTATCCTTTTCTCTTGGCCTACTTATAATATAGTAATTGATTAATCCAATCGCTATAAATGCGGTTAAGTTCTTCTTGGAATCTTATTTTATATTCAACTGTAAACATCATTGGAAGTTTCCTCTATCATTTTAAGAATATGGTTTTATGAGTTATGACAAATATGTGAACTATTTTATCTTTTAAAAACTGTATTGGTAGTTGACCAACTTACAACTACTACCTTAAGTCATTTCACTTTTAGGAATTACATATTCACTAAATACAATAATAATAGTAATAATAATAAATATAGTGTAATCTTATGTGAAATTTGAAGAAGGTTGAATATATGTAGATTTAATCTCTATGTTTAGAAGATAGAGAAATTATTCTGCTCAATAGAGATATATCTAATACGGAAAAAAAAGAATATTTTTGACTAGGTATAAACTTTAAACGTTAATTGAAATTATATATAGAATAGGTAGTAGCTAGGAAATACAATAGAACATTATTGTTCTAATTTGATTAATGAATTTGATTCCTTGAAATCCTTGAAAGATTTGTAAACCAATTCATATACTATTATTAAATTATGTCAAATTTTGTGAGACATATCTAGCACAATTATTGTGATATAATATGTTACTAATCAGTGCTACAATGATAAGAAAAATATCTCATGATTCTTTCGTAATCTATGTTTAATCAGAATAAATTCCATTTCTCAATTATTATTTATTTAGATAACAACACAACCTAATTACCTAATCCCCTTGTCCTTGACCACGTCACGTTATTTCAGAAAAATAAACATTTTTTTTCTCATAAAAGAATCAATTACTTGGTGATCATGGATATTATTAAAATTCATTTAATATATATGGAACTTTTTTCTCTCAATTCGTTTAATTCATTTACGTTAATAGTGTAGTATATAGTACATTGATTATTATTATTATTATATTATATTATTAGCGTATAAAAATTGAACTTTTTTTAATGATACAGGAGGATTGGGTATTATGCCGAGTA-TTTCACAAGAAGAAGGAATTACTTGCTACAAAGCAAGAAATTGGAAGCAACAATATATACTACGATAACGATACAATAAGTTGTTCATCTCTACCACCATTAATGGATCCTTACATTACTTTCGAC</genome_strand>
        <mrna_strand>TTTCATTTCTTTTCAAAAATGAGTAACAACAGCAGCTTGAGCATGGTGGAATCCAAATTACCACCAGGATTTAGATTTCATCCAAGAGATGAAGAACTTATTTGTGATTACTTAATGAAGAAAGTTGAT---CAATCCACAGACCAACAACAATACCCTCTTCTCATAGAAGTTGACCTCAATAAATCCGAACCTTGGGAAATTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGGCATGTGTTGGAGGCAAGGATTGGTACTTCTACAGCCAACGTGACCGAAAATACGCGACGGGGCTCCGAACAAACAGAGCCACCGTATCTGGTTACTGGAAAGCCACCGGAAAAGATCGTGCAATAATCAGAAAAGGAAGTCTTGTAGGAATGAGGGAAACCCTAGTTTTCTATCAAGGAAGAGCCCCAAAGGGAAGAAAAAGTGATTGCGTTATGCATGAATTCCGCCTTGATGAAGGTCCCCTTAGT-AACATTCGT-TCTCAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTTCTCTCAAG...........................................................................................................GAGGATTGGGTATTATGCCGAGTATTTTCAC-AGAACAAGGAATTACTTGCTACCAAGCAGGGAATTGGAAGC-ACAACATATACTACNGATACGATACAATAAGTTCTTCATCTTTACCA-CATTAATGGATCCTTACATTACTTTCGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374913" ref_strand="+" ref_description="SGN-E374913 [TUS-15-C15](-)">
      <seq>attcattcatattcatattattgttgttagggtttgtttggtcgaaagtaatgtaaggatccattaatggtggtagagatgaacaacttattgtatcgttatcgtagtatatattgttgcttccaatttcttgctttgtagcaagtaattccttcttcttgtgaaatactcggcataatacccaatcctccttgatagaagaaatttgaggacgaatgggaagttctaggcggaattcatgcataacccagtcactttttcttccttttggggctctcccttgatagaaaactagggtttttctcattcctactagacttccttttctgatgattgcacgatcttttccggtggctttccagtaaccagatacggtggctctgtttgttcggagccccgtcgcgtattttcggtcacgttggctgtagaagtaccactccttccctccaacacatgccacttcaggaatttcccatggttcagatttattgaggtcaacttctatgagaagagggtattgttgttgatattcggattgttgatcaactttcttcattaagtaatcacaaataagttcttcatctcttggatggaatctaaatcctggtggtaatttggattccaccatgctcaagctgttgttgttactcattttaagagaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="40079" stop="35210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39779" g_stop="39588" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39587" i_stop="37996" i_length="1592">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37995" g_stop="37724" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="464" r_length="272" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37723" i_stop="35709" i_length="2015">
            <donor d_prob="0.838" d_score="0.98"/>
            <acceptor a_prob="0.367" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35708" g_stop="35507" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="666" r_length="202" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E374913" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39779" e_stop="39588"/>
          <exon e_start="37995" e_stop="37724"/>
          <exon e_start="35708" e_stop="35507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATTCATATTCATATTATTGTTGTTAGGGTTTGTTTGGTCGAAAGTAATGTAAGGATCCATTAATGGTGGTAGAGATGAACAACTTATTGTATCGTTATCGTAGTATATATTGTTGCTTCCAATTTCTTGCTTTGTAGCAAGTAATTCCTTCTTCTTGTGAAATACTCGGCATAATACCCAATCCTCCTGTATCATTAAAAAAAGTTCAATTTTTATACGCTAATAATATAATATAATAATAATAATAATCAATGTACTATATACTACACTATTAACGTAAATGAATTAAACGAATTGAGAGAAAAAAGTTCCATATATATTAAATGAATTTTAATAATATCCATGATCACCAAGTAATTGATTCTTTTATGAGAAAAAAAATGTTTATTTTTCTGAAATAACGTGACGTGGTCAAGGACAAGGGGATTAGGTAATTAGGTTGTGTTGTTATCTAAATAAATAATAATTGAGAAATGGAATTTATTCTGATTAAACATAGATTACGAAAGAATCATGAGATATTTTTCTTATCATTGTAGCACTGATTAGTAACATATTATATCACAATAATTGTGCTAGATATGTCTCACAAAATTTGACATAATTTAATAATAGTATATGAATTGGTTTACAAATCTTTCAAGGATTTCAAGGAATCAAATTCATTAATCAAATTAGAACAATAATGTTCTATTGTATTTCCTAGCTACTACCTATTCTATATATAATTTCAATTAACGTTTAAAGTTTATACCTAGTCAAAAATATTCTTTTTTTTCCGTATTAGATATATCTCTATTGAGCAGAATAATTTCTCTATCTTCTAAACATAGAGATTAAATCTACATATATTCAACCTTCTTCAAATTTCACATAAGATTACACTATATTTATTATTATTACTATTATTATTGTATTTAGTGAATATGTAATTCCTAAAAGTGAAATGACTTAAGGTAGTAGTTGTAAGTTGGTCAACTACCAATACAGTTTTTAAAAGATAAAATAGTTCACATATTTGTCATAACTCATAAAACCATATTCTTAAAATGATAGAGGAAACTTCCAATGATGTTTACAGTTGAATATAAAATAAGATTCCAAGAAGAACTTAACCGCATTTATAGCGATTGGATTAATCAATTACTATATTATAAGTAGGCCAAGAGAAAAGGATAATTTAGATAATTAAGCCAAAAGTTCATTATCATGGGCCATAAATATATATGAACTGTCATTTATTATGTACAGCCACATACTTGTATTTTTCATAACGACAAATTAAATTCATGCTTATTTCACAATTTCTCAAATAATTTTTTTTTTTTAAATATGAATGGACAGTTCTCTCAATTGAAAACTACTTTTATCTACTTTATTTATTTTATAGTTTTTATGATATATTTTTTTTCATAATATAATAATTAATGAACTTTTTATGGACCTAAATGCTTCAATTCGTCATATTTATCGGCAAAAGTAATTGACAGTATGACCAAAGAAGAACTAGTTTACCTTTTTTTTACATATACAATTTTTTTGTTTAATATATATAGAATTTTATGCATGTATTATATGATATATATATATATATATAATATTCTCTAAGCATATATACTCCAAAGTAAATCAATTGCACATGTAAATGATATTTTATGAAAACTTACCAAAAAAAAAAATCTGTGGTTTATTAGTCGATGTTCTATTAGTATATATAAACATGTGCGTTCAAATATATAAATATTAAATTTAGAACTCAATTGGAGATGGTAGAGTACCTTGATAGAAGAAATTTGAGGACGAATGGGAAGTTCTAGGCGGAATTCATGCATAACCCAGTCACTTTTTCTTCCTTTTGGGGCTCTCCCTTGATAGAAAACTAGGGTTTTTCTCATTCCTACTAGACTTCCTTTTCTGATGATTGCACGATCTTTTCCGGTGGCTTTCCAGTAACCAGATACGGTGGCTCTGTTTGTTCGGAGCCCCGTCGCGTATTTTCGGTCACGTTGGCTGTAGAAGTACCACTCCTTCCCTCCAACACATGCCACTTCTGTAAATAATATATAACGTTATGATTAAGTAACTAATTTTAGCTTAGGTACTACACAATTCAATGGTAATAATAAAAGATATGATCTTTGTCTAAATGAGATGATTACATAGTTCAATATTGATTGATTGTTTCTAGAAAATCATAGTAAGTTTCGACGTGACATGCATCATAAGAAGATAGGATTGAGTAGCATAAGAAACAAATAATAAAAGGATGAGAAAATGAAAGGAAAAAGGAATATGTCAATTTCATAGTATTATTATCGAAAATTAAGAAGATGATGATAAAAAGGGAAGGGGACCTGTTTTATTTTTGAAAAAATAGCCTAAACTTTTATGCATGGGTTAAGTGCTAAAATCTCTATCCAAAAATGGAGATAATTAATTATTGGAGGGCCATATTTATGCAAATGGCTTAGGTAAAAGATGTTGATGGGGAAATTTGAAGTTCAAAGAACCTACATGTATAGTGCGTGTATATTACTGTTCCTTTGAAAATAGATATGTAAAAGAAAGAATTATATTCCTACAATAAAGGGATTAAATTGACCCCAAAAAATTACTAGCTAGGTGATCAATTTTTGCTCAATTAATTTCATTGGAGATATATTTGCTTATCTCCAAAATTTATCATAAATACCTCGATTAATTTCATTAGATATCTATTATCTTTATTTATATATGTATTGGAAAAATACAAATGTCAATCCACATTTTGATGTTTATAACGAGTTTATAGCTAGTGATTTTAAAAATTAAAATAAGTAAAATTTTATTGTACGTGTATAAGCGGAATCATACCCCACCATTAATGCAAAAGAATAAGTGAGAACACTATTGATCCTCCTGATCGATGGGTAGAGTATGAAAAAAAGAAGAGGAATGGAACCAAGTGTCTACTTTGTTATTGTATTCTCGACAAATGTTTCTTTAATATATTTAAAATATTTCTTAATATAAATATACGATCATACACAAAAGTAATTGAATTCTTGAAAATCCGCTTTTACCACCCCTAATCCATCTCTGAAGATACATATCCAATAAATTTAATCGAGATAGATATAAACTGATCGAGACACTCTTAATGGCAAAAGAAAAATCGAGGATGTCGACAAGATAGCTTTAAAATTAAACGGGGTAAAGTTATGACCAGAATTAATGGTACTTAAATTTTGTCTAAATTGGAGTATAAATGTACACGCGTGTGGTCGACACAAGTCACTTAAGAGATATATATGCCATGTTGTAAGTTAATTGATCAATATTTGCATTAATCTCTATCGCTTTCACCATCTTTTGGTTCAACACAATATGCCAATACTGTCAATTTCTACAAAAGTTAATTGAATGAGAAACCTTATGAGAACCATTAATTCGTATATATCTCATATATCATTCACATATACAAATACAACTCAAAGAGAATCATAAAAATAATTAATTTTGTAAATTTAATATAATTTTTTAGCGAGAAGTGTTTATTATTATTATGTGATGGTTAATTTCTTTTATTAAAAAAAGTAATAATAAAGCAGGAGGACCATGGTAATAAATGTTCTGTGGTTACTTATTTTGGAAAATATAAATTAAAGACTTTGGGTTATAGACAGGAAAGTCAAGCTATATTGTAGAAATACTTTGAGAGCGTTTAACATACGCAGTGTGAACAAACGAATAAGCATAAAGAAAATTAAAATTGGTAAGTGTTAATGCTAACGAAGAAGACAATTTTAATTATAAATTTTTTTTTTCTAATTAAGACTAATCACAATTATTATTAGCAGTGTATGATATTCTTATCCACGAAAAATAGAAACCAAAAAAATGAAAACTTTGGACCAATCCGTTAGCTAGCTATCACTTGATCCACAACCCAACTATGTGGCACGAACAAAAAATTCATATATATAAGCATAAAAGTGTGTGATCAATTAAAAGATGTGAATGAAATAAATTCGAATCTACGAAAAAATTATAAGATTCTGTAAAAGTAATTAGTATAAACGTACCAG-GAATTTCCCATGGTTCAGATTTATTGAGGTCAACTTCTATGAGAAGAGGGTATTGTTGTTGATATTCGGATTGTTGATCAACTTTCTTCATTAAGTAATCACAAATAAGTTCTTCATCTCTTGGATGGAATCTAAATCCTGGTGGTAATTTGGATTCCACCATGCTCAAGCTGTTGTTGTTACTCATTTTGAAGAGAAATGA</genome_strand>
        <mrna_strand>ATTCATTCATATTCATATTATTGTTGTTAGGGTTTGTTTGGTCGAAAGTAATGTAAGGATCCATTAATGGTGGTAGAGATGAACAACTTATTGTATCGTTATCGTAGTATATATTGTTGCTTCCAATTTCTTGCTTTGTAGCAAGTAATTCCTTCTTCTTGTGAAATACTCGGCATAATACCCAATCCTCCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATAGAAGAAATTTGAGGACGAATGGGAAGTTCTAGGCGGAATTCATGCATAACCCAGTCACTTTTTCTTCCTTTTGGGGCTCTCCCTTGATAGAAAACTAGGGTTTTTCTCATTCCTACTAGACTTCCTTTTCTGATGATTGCACGATCTTTTCCGGTGGCTTTCCAGTAACCAGATACGGTGGCTCTGTTTGTTCGGAGCCCCGTCGCGTATTTTCGGTCACGTTGGCTGTAGAAGTACCACTCCTTCCCTCCAACACATGCCACTTCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATTTCCCATGGTTCAGATTTATTGAGGTCAACTTCTATGAGAAGAGGGTATTGTTGTTGATATTCGGATTGTTGATCAACTTTCTTCATTAAGTAATCACAAATAAGTTCTTCATCTCTTGGATGGAATCTAAATCCTGGTGGTAATTTGGATTCCACCATGCTCAAGCTGTTGTTGTTACTCATTTT-AAGAGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200066" ref_strand="+" ref_description="SGN-E200066 [cLEC-8-A22]">
      <seq>acaatccgaatatcaacaacaataccctcttctcatagaagttgacctcaataaatctgaaccatgggaaattcctgaagtggcatgtgttggagggaaggagtggtacttctacagccaacgtgaccgaaaatacgcgacggggctccgaacaaacagagccaccgtatctggttactggaaagccaccggaaaagatcgtgcaatcatcagaaaaggaagtctagtaggaatgagaaaaaccctaattttctatcaagggagagccccaaaaggaagaaaaagtgactgggttatgcatgaattccgcctagaacttcccattcgtcctcaaatttcttctatcaaggaggattgggtattatgccgagtatttcacaagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="35335" stop="39925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35635" g_stop="35711" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35712" i_stop="37725" i_length="2014">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37726" g_stop="37997" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="349" r_length="272" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37998" i_stop="39589" i_length="1592">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39590" g_stop="39625" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="385" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E200066" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35635" e_stop="35711"/>
          <exon e_start="37726" e_stop="37997"/>
          <exon e_start="39590" e_stop="39625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATCCGAATATCAACAACAATACCCTCTTCTCATAGAAGTTGACCTCAATAAATCTGAACCATGGGAAATTCCTGGTACGTTTATACTAATTACTTTTACAGAATCTTATAATTTTTTCGTAGATTCGAATTTATTTCATTCACATCTTTTAATTGATCACACACTTTTATGCTTATATATATGAATTTTTTGTTCGTGCCACATAGTTGGGTTGTGGATCAAGTGATAGCTAGCTAACGGATTGGTCCAAAGTTTTCATTTTTTTGGTTTCTATTTTTCGTGGATAAGAATATCATACACTGCTAATAATAATTGTGATTAGTCTTAATTAGAAAAAAAAAATTTATAATTAAAATTGTCTTCTTCGTTAGCATTAACACTTACCAATTTTAATTTTCTTTATGCTTATTCGTTTGTTCACACTGCGTATGTTAAACGCTCTCAAAGTATTTCTACAATATAGCTTGACTTTCCTGTCTATAACCCAAAGTCTTTAATTTATATTTTCCAAAATAAGTAACCACAGAACATTTATTACCATGGTCCTCCTGCTTTATTATTACTTTTTTTAATAAAAGAAATTAACCATCACATAATAATAATAAACACTTCTCGCTAAAAAATTATATTAAATTTACAAAATTAATTATTTTTATGATTCTCTTTGAGTTGTATTTGTATATGTGAATGATATATGAGATATATACGAATTAATGGTTCTCATAAGGTTTCTCATTCAATTAACTTTTGTAGAAATTGACAGTATTGGCATATTGTGTTGAACCAAAAGATGGTGAAAGCGATAGAGATTAATGCAAATATTGATCAATTAACTTACAACATGGCATATATATCTCTTAAGTGACTTGTGTCGACCACACGCGTGTACATTTATACTCCAATTTAGACAAAATTTAAGTACCATTAATTCTGGTCATAACTTTACCCCGTTTAATTTTAAAGCTATCTTGTCGACATCCTCGATTTTTCTTTTGCCATTAAGAGTGTCTCGATCAGTTTATATCTATCTCGATTAAATTTATTGGATATGTATCTTCAGAGATGGATTAGGGGTGGTAAAAGCGGATTTTCAAGAATTCAATTACTTTTGTGTATGATCGTATATTTATATTAAGAAATATTTTAAATATATTAAAGAAACATTTGTCGAGAATACAATAACAAAGTAGACACTTGGTTCCATTCCTCTTCTTTTTTTCATACTCTACCCATCGATCAGGAGGATCAATAGTGTTCTCACTTATTCTTTTGCATTAATGGTGGGGTATGATTCCGCTTATACACGTACAATAAAATTTTACTTATTTTAATTTTTAAAATCACTAGCTATAAACTCGTTATAAACATCAAAATGTGGATTGACATTTGTATTTTTCCAATACATATATAAATAAAGATAATAGATATCTAATGAAATTAATCGAGGTATTTATGATAAATTTTGGAGATAAGCAAATATATCTCCAATGAAATTAATTGAGCAAAAATTGATCACCTAGCTAGTAATTTTTTGGGGTCAATTTAATCCCTTTATTGTAGGAATATAATTCTTTCTTTTACATATCTATTTTCAAAGGAACAGTAATATACACGCACTATACATGTAGGTTCTTTGAACTTCAAATTTCCCCATCAACATCTTTTACCTAAGCCATTTGCATAAATATGGCCCTCCAATAATTAATTATCTCCATTTTTGGATAGAGATTTTAGCACTTAACCCATGCATAAAAGTTTAGGCTATTTTTTCAAAAATAAAACAGGTCCCCTTCCCTTTTTATCATCATCTTCTTAATTTTCGATAATAATACTATGAAATTGACATATTCCTTTTTCCTTTCATTTTCTCATCCTTTTATTATTTGTTTCTTATGCTACTCAATCCTATCTTCTTATGATGCATGTCACGTCGAAACTTACTATGATTTTCTAGAAACAATCAATCAATATTGAACTATGTAATCATCTCATTTAGACAAAGATCATATCTTTTATTATTACCATTGAATTGTGTAGTACCTAAGCTAAAATTAGTTACTTAATCATAACGTTATATATTATTTACAGAAGTGGCATGTGTTGGAGGGAAGGAGTGGTACTTCTACAGCCAACGTGACCGAAAATACGCGACGGGGCTCCGAACAAACAGAGCCACCGTATCTGGTTACTGGAAAGCCACCGGAAAAGATCGTGCAATCATCAGAAAAGGAAGTCTAGTAGGAATGAGAAAAACCCTAGTTTTCTATCAAGGGAGAGCCCCAAAAGGAAGAAAAAGTGACTGGGTTATGCATGAATTCCGCCTAGAACTTCCCATTCGTCCTCAAATTTCTTCTATCAAGGTACTCTACCATCTCCAATTGAGTTCTAAATTTAATATTTATATATTTGAACGCACATGTTTATATATACTAATAGAACATCGACTAATAAACCACAGATTTTTTTTTTTGGTAAGTTTTCATAAAATATCATTTACATGTGCAATTGATTTACTTTGGAGTATATATGCTTAGAGAATATTATATATATATATATATATCATATAATACATGCATAAAATTCTATATATATTAAACAAAAAAATTGTATATGTAAAAAAAAGGTAAACTAGTTCTTCTTTGGTCATACTGTCAATTACTTTTGCCGATAAATATGACGAATTGAAGCATTTAGGTCCATAAAAAGTTCATTAATTATTATATTATGAAAAAAAATATATCATAAAAACTATAAAATAAATAAAGTAGATAAAAGTAGTTTTCAATTGAGAGAACTGTCCATTCATATTTAAAAAAAAAAAATTATTTGAGAAATTGTGAAATAAGCATGAATTTAATTTGTCGTTATGAAAAATACAAGTATGTGGCTGTACATAATAAATGACAGTTCATATATATTTATGGCCCATGATAATGAACTTTTGGCTTAATTATCTAAATTATCCTTTTCTCTTGGCCTACTTATAATATAGTAATTGATTAATCCAATCGCTATAAATGCGGTTAAGTTCTTCTTGGAATCTTATTTTATATTCAACTGTAAACATCATTGGAAGTTTCCTCTATCATTTTAAGAATATGGTTTTATGAGTTATGACAAATATGTGAACTATTTTATCTTTTAAAAACTGTATTGGTAGTTGACCAACTTACAACTACTACCTTAAGTCATTTCACTTTTAGGAATTACATATTCACTAAATACAATAATAATAGTAATAATAATAAATATAGTGTAATCTTATGTGAAATTTGAAGAAGGTTGAATATATGTAGATTTAATCTCTATGTTTAGAAGATAGAGAAATTATTCTGCTCAATAGAGATATATCTAATACGGAAAAAAAAGAATATTTTTGACTAGGTATAAACTTTAAACGTTAATTGAAATTATATATAGAATAGGTAGTAGCTAGGAAATACAATAGAACATTATTGTTCTAATTTGATTAATGAATTTGATTCCTTGAAATCCTTGAAAGATTTGTAAACCAATTCATATACTATTATTAAATTATGTCAAATTTTGTGAGACATATCTAGCACAATTATTGTGATATAATATGTTACTAATCAGTGCTACAATGATAAGAAAAATATCTCATGATTCTTTCGTAATCTATGTTTAATCAGAATAAATTCCATTTCTCAATTATTATTTATTTAGATAACAACACAACCTAATTACCTAATCCCCTTGTCCTTGACCACGTCACGTTATTTCAGAAAAATAAACATTTTTTTTCTCATAAAAGAATCAATTACTTGGTGATCATGGATATTATTAAAATTCATTTAATATATATGGAACTTTTTTCTCTCAATTCGTTTAATTCATTTACGTTAATAGTGTAGTATATAGTACATTGATTATTATTATTATTATATTATATTATTAGCGTATAAAAATTGAACTTTTTTTAATGATACAGGAGGATTGGGTATTATGCCGAGTATTTCACAAGAAG</genome_strand>
        <mrna_strand>ACAATCCGAATATCAACAACAATACCCTCTTCTCATAGAAGTTGACCTCAATAAATCTGAACCATGGGAAATTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGGCATGTGTTGGAGGGAAGGAGTGGTACTTCTACAGCCAACGTGACCGAAAATACGCGACGGGGCTCCGAACAAACAGAGCCACCGTATCTGGTTACTGGAAAGCCACCGGAAAAGATCGTGCAATCATCAGAAAAGGAAGTCTAGTAGGAATGAGAAAAACCCTAATTTTCTATCAAGGGAGAGCCCCAAAAGGAAGAAAAAGTGACTGGGTTATGCATGAATTCCGCCTAGAACTTCCCATTCGTCCTCAAATTTCTTCTATCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGATTGGGTATTATGCCGAGTATTTCACAAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395596" ref_strand="+" ref_description="SGN-E395596 [TUS-16-F22](-)">
      <seq>tcacccctaaccaaactttcacttcccatagccaccacctcccctccgccacaaccgccatcggatctaccgcatacggtggttttccagctgatattggaaattacctaaatgccactgcaacatcctctacgtgtgataataacaaagtaattagagctgttttaagtcatttgagtaccaagaataatattattatggaaggtaataatagcaataacaacaatattatcaatcctgcccaaaatataaaaggaggaaattcacctagctttggtgaaggaagttctgaaactagctttttatttgaggtgggatatcctacaatgtggaacaattattgatttttgagagaaaatattctacttagatgtgtgatataatatatgacaagtcttgttttagttgctagtattatattgtaatcttagaatatatatatataactatactagctagattaatttccaatgcatgtaattccaataatgatactttcctagtggttaaagtatataattgtctcctagatagattggaattctccgtaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="39513" stop="40662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39813" g_stop="40361" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="550" polyA_stop="571"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E395596" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39813" e_stop="40361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCCCTAACCAAACTTTCACTTCCCATAGCCACCACCTCCCCTCCGCCACAACCGCCATCGGATCTACCGCATACGGTGGTTTTCCAGCTGATATTGGAAATTACCTAAATGCCACTGCAACATCCTCTACGTGTGATAATAACAAAGTAATTAGAGCTGTTTTAAGTCATTTGAGTACCAAGAATAATATTATTATGGAAGGTAATAATAGCAATAACAACAATATTATCAATCCTGCCCAAAATATAAAAGGAGGAAATTCACCTAGCTTTGGTGAAGGAAGTTCTGAAACTAGCTTTTTATCTGAGGTGGGATATCCTACAATGTGGAACAATTATTGATTTTTGAGAGAAAATATTCTACTTAGATGTGTGATATAATATATGACAAGTCTTGTTTTAGTTGCTAGTATTATATTGTAATCTTAGAATATATATATATAACTATACTAGCTAGATTAATTTCCAATGCATGTAATTCCAATAATGATACTTTCCTAGTGGTTAATGTATATAATTGTCTCCTAGATAGATTGGAATTCTCCGT</genome_strand>
        <mrna_strand>TCACCCCTAACCAAACTTTCACTTCCCATAGCCACCACCTCCCCTCCGCCACAACCGCCATCGGATCTACCGCATACGGTGGTTTTCCAGCTGATATTGGAAATTACCTAAATGCCACTGCAACATCCTCTACGTGTGATAATAACAAAGTAATTAGAGCTGTTTTAAGTCATTTGAGTACCAAGAATAATATTATTATGGAAGGTAATAATAGCAATAACAACAATATTATCAATCCTGCCCAAAATATAAAAGGAGGAAATTCACCTAGCTTTGGTGAAGGAAGTTCTGAAACTAGCTTTTTATTTGAGGTGGGATATCCTACAATGTGGAACAATTATTGATTTTTGAGAGAAAATATTCTACTTAGATGTGTGATATAATATATGACAAGTCTTGTTTTAGTTGCTAGTATTATATTGTAATCTTAGAATATATATATATAACTATACTAGCTAGATTAATTTCCAATGCATGTAATTCCAATAATGATACTTTCCTAGTGGTTAAAGTATATAATTGTCTCCTAGATAGATTGGAATTCTCCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334312" ref_strand="+" ref_description="SGN-E334312 [cTOD-21-I20]">
      <seq>ctcgtgccgatggaactccggcgacagcatagcctaagctccttcttcagcaaggagaactgagcttaagtatagtaatatctttcaatccgcttgaactttgtagtccaagagaacggagcttttaagctagaaactttaatggagttaactttcccagtgaaagctcagttatttggctccaaaattggtcacaaatctctaagctactcaacttcagtaaaattctaccagaaagtatctcgtcctcaattttcagcatgtggaatcagggttcgttcggaatttgaccataaaatcaatggcgctttctctcctgattctgacgctcggattctcgaccggcaaaaagcattggatgctgcaatgaacgatataaacagctcgtttggcaaaggaagcgttactagattgggtagtgctggcggagctctggttgaaacttttccgagtggctgcttgacgctagactttgctttaggtggtggcattcccaaaggcagaattgttgagatatatgggcccgaaagtagtggaaagactaccttagctctccatgctattgcagaagtacagaagctaggaggcaatgcaatgcttgttgatgctgagcatgcttttgatcctgcatactccaaagcacttggagtagatgtagaagaatttgatcgtctgccagcctgataatggagagatggctctagaatcgcagaccggatgtgtagatcaggtgccgtagatctcatttgcattgattcagtctcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="43617" stop="46061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43916" g_stop="44259" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44260" i_stop="44360" i_length="101">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44361" g_stop="44452" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="437" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44453" i_stop="44647" i_length="195">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44648" g_stop="44723" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="513" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44724" i_stop="45068" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45069" g_stop="45131" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="576" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45132" i_stop="45444" i_length="313">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45445" g_stop="45574" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="706" r_length="130" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45575" i_stop="45700" i_length="126">
            <donor d_prob="0.977" d_score="0.94"/>
            <acceptor a_prob="0.835" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45701" g_stop="45761" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="707" r_stop="767" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E334312" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43916" e_stop="44259"/>
          <exon e_start="44361" e_stop="44452"/>
          <exon e_start="44648" e_stop="44723"/>
          <exon e_start="45069" e_stop="45131"/>
          <exon e_start="45445" e_stop="45574"/>
          <exon e_start="45701" e_stop="45761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCGCC-ATGGAACTCCGGCGACAGCATAGCCTAAGCTCCTTCTTCAGCAAGGAGAACTGAGCTTAAGTATAGTAATATCTTTCAATCCGCTTGAACTTTGTAGTCCAAGAGAACGGAGCTTTTAAGCTAGAAACTTTAATGGAGTTAACTTTCCCAGTGAAAGCTCAGTTATTTGGCTCCAAAATTGGTCACAAATCTCTAAGCTACTCAACTTCAGTAAAATTCTACCAGAAAGTATCTCGTCCTCAATTTTCAGCATGTGGAATCAGGGTTCGTTCGGAATTTGACCATAAAATCAATGGCGCTTTCTCTCCTGATTCTGACGCTCGGATTCTCGACCGGGTATCTCTTTCTCTCTCTACATATGTTTGTATTTATAGTTCTGTATGTTGCTTTACTGAAGAATTCCATGTGACTGACTTCCCTAACTCCTCCTGCTTCAGCAAAAAGCATTGGATGCTGCAATGAACGATATAAACAGCTCGTTTGGCAAAGGAAGCGTTACTAGATTGGGTAGTGCTGGCGGAGCTCTGGTGTATGTAATTTTTTTACTGAATTCAAAAAAAGTTATATTTAGTTTCTGCACAGGAACCATGTCGAAACAAACATGAAATGTTTTGGGGAAAAGAAGCAGAAAATGAAAATGGAGAAAAATATTCTGCCCAAAATTTTGATCATTGTTAGACTATATCATTCTTACAAGCACTTGTGTATCTGCTTCTTTATGCAGTGAAACTTTTCCGAGTGGCTGCTTGACGCTAGACTTTGCTTTAGGTGGTGGCATTCCCAAAGGCAGAATTGTTGAGGTTTAAATTTCTATCTTTTTCATTTGTATTTTCAGTATGCATTAGTTATTACTGGTTATTCGCCATCTATTTGGTTTCAAATGCTTGGCTGCTTAGTTATTACTAACTTTTGGTTTTGATTACACATAGTGGACTAACTCCTACATGAAGATGAATAGAACAGTTATATTGACCTGTTAATAGAGTGAGTGCGTTAGAAATTTACTTATTTCATTAATAGGCTGGGGTATTTGATTCTGATGTTTGTCCACATCCTGAACTTCTCAACTGATGTGAGCATGTGGAATATTAACAAGGTTGCTGCAATTTGTTGTCTAATTGCTTTCCTCATATTTTTCTTTACAGATATATGGGCCCGAAAGTAGTGGAAAGACTACCTTAGCTCTCCATGCTATTGCAGAAGTACAGGTGCAGTATGTGTTTGGTTTATTCTACTCATCAGCTTGGAACTTCTATAGGCATGGGGCTGCACTTGGAAGGGGAGGGGGCATTTGATTGTTTGGATGAAAAAGGAAGTCATATGCTTCTATCTTACAGATGAAGTGAAAGAAAATAATGGACAATTTGGAAGTCTAGAAAGCAAACTTAGAATCCTTTCCAGCATCCATTGGAGCTTTATTATTGTGACCAATCCACTGAAACCACTTGCCTTAGGCTTATTACTGAAAATGTTCTCATGTAAAAGGAGACAGATTATAAAATGTTAAATATTGTTATGCAGAAGCTAGGAGGCAATGCAATGCTTGTTGATGCTGAGCATGCTTTTGATCCTGCATACTCCAAAGCACTTGGAGTAGATGTAG-AGAATTTGATCGTCTGCCAGCCTGATAATGGAGAGATGGCTCTAGAAAGTAACAACTTTTCCTTGTTTACACCATTAGAAATGATTTTTCAGTTTTTTGTGCTAGCAACCTTGTCAATAATCATGGTGGTCTTACTAGAGTTTGTACTTTCAACCAAACTTTTGTCTATCTCAGTCGCAGACCGGATGTGTAGATCAGGTGCCGTAGATCTCATTTGCATTGATTCAGTCTCAGC</genome_strand>
        <mrna_strand>CTCGTGCCGATGGAACTCCGGCGACAGCATAGCCTAAGCTCCTTCTTCAGCAAGGAGAACTGAGCTTAAGTATAGTAATATCTTTCAATCCGCTTGAACTTTGTAGTCCAAGAGAACGGAGCTTTTAAGCTAGAAACTTTAATGGAGTTAACTTTCCCAGTGAAAGCTCAGTTATTTGGCTCCAAAATTGGTCACAAATCTCTAAGCTACTCAACTTCAGTAAAATTCTACCAGAAAGTATCTCGTCCTCAATTTTCAGCATGTGGAATCAGGGTTCGTTCGGAATTTGACCATAAAATCAATGGCGCTTTCTCTCCTGATTCTGACGCTCGGATTCTCGACCGG.....................................................................................................CAAAAAGCATTGGATGCTGCAATGAACGATATAAACAGCTCGTTTGGCAAAGGAAGCGTTACTAGATTGGGTAGTGCTGGCGGAGCTCTGGT...................................................................................................................................................................................................TGAAACTTTTCCGAGTGGCTGCTTGACGCTAGACTTTGCTTTAGGTGGTGGCATTCCCAAAGGCAGAATTGTTGAG.........................................................................................................................................................................................................................................................................................................................................................ATATATGGGCCCGAAAGTAGTGGAAAGACTACCTTAGCTCTCCATGCTATTGCAGAAGTACAG.........................................................................................................................................................................................................................................................................................................................AAGCTAGGAGGCAATGCAATGCTTGTTGATGCTGAGCATGCTTTTGATCCTGCATACTCCAAAGCACTTGGAGTAGATGTAGAAGAATTTGATCGTCTGCCAGCCTGATAATGGAGAGATGGCTCTAG-AA..............................................................................................................................TCGCAGACCGGATGTGTAGATCAGGTGCCGTAGATCTCATTTGCATTGATTCAGTCTCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746278" ref_strand="+" ref_description="SGN-E746278 [GI|47104776]">
      <seq>ctccggcgacagcatagcctaagctccttcttcagcaaggagaactgagcttaagtatagtaatatctttcaatccgcttgaactttgtagtccaagagaacggagcttttaagctagaaactttaatggagttaactttcccagtgaaagctcagttatttggctccaaaattggtcacaaatctctaagctactcaacttcagtaaaattctaccagaaagtatctcgtcctcaattttcagcatgtggaatcagggttcgttcggaatttgaccataaaatcaatggcgctttctctcctgattctgacgctcggattctcgaccggcaaaaagcattggatgctgcaatgaacgatataaacagctcgtttggcaaaggaagcgttactagattgggtagtgctggcggagctctggttgaaacttttccgagtggctgcttgacgctagactttgctttaggtggtggcattcccaaaggcagaattgttgagatatatgggcccgaaagtagtggaaagactaccttagctctccatgctattgcagaagtacagaagctaggaggcaatgcaatgcttgttgatgctgagcatgcttttgatcctgcatactccaaagcacttggagtagatgtagagaatttgatcgtctgccagcctgataatggagagatggctctagaaatcgcagaccggatgtgtagatcaggtgccgtagatctcatttgcattgattcagtctcagcccttactccacgtgctgaaattgagggagaaatcgggatgcagcaaatgggtttacaagcacgcctgatgagtcaagctttacgtaaaatgtcaggcaatgcctccaaagctggatgtactcttatattcctcaatcagataagatacaagattggtgtttattacggaaatcctgaggtcacaagtggagggattgccttaaagtttttcgcctccgttcgacttgaaatccgttccacagggaagataaaatctgcaaaaggagacgaggaagtgggtattaaggtccgagtgagagttcaaaagagtaaggtttctagaccatacaagcaagcagaatttgaaattatgtttggagaaggagtgagcaagctgggttgtgtattagattgtgcggaactgattgaggtggtggctaagaaaggttcatggtataactacggagagcataggctgggacagggaagagagaaagcattgcaatatttgagagaaaatcctcttctctctgaagaaatagaaaagatggttcggtcatcggtgctagagacaaacgggtttttaggctcttcttcattgaaacatccactgccgcagcttctagaggaagatgcacttcaagagatgcaataacgcggatcagagttctgcttcaattgattatgataacagagcatttttcagccaacattgacatccatatgtgattctacattagaaatgagcaaagttggggacactgccagatttgctttgtatgagaccatttctgtgcactagagattcttgaagaaaggtgtatattcttgtaagctaatggatctttgcacgaagaggaagacacatacatcctgaattaaccaaactgaagaattagagttaaggtggtgaaaaggagtgttagctctttgctgcatattttgtctttgttttggttgtactggtagccaaaattttgaaaatctgaagatttttgcttgtaacatttgcattggaagtaccactctagtgttgcgttggtattattatcccattagctctatgcattaagaaatttagtaaataaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="43630" stop="49022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43930" g_stop="44259" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44260" i_stop="44360" i_length="101">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44361" g_stop="44452" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="422" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44453" i_stop="44647" i_length="195">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44648" g_stop="44723" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="498" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44724" i_stop="45068" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45069" g_stop="45131" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="561" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45132" i_stop="45444" i_length="313">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45445" g_stop="45574" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="691" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45575" i_stop="45700" i_length="126">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.835" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45701" g_stop="45786" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="777" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="45787" i_stop="45876" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="45877" g_stop="46002" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="778" r_stop="903" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="46003" i_stop="46320" i_length="318">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="46321" g_stop="46425" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="904" r_stop="1008" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="46426" i_stop="46514" i_length="89">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="46515" g_stop="46571" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1009" r_stop="1065" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="46572" i_stop="46991" i_length="420">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="46992" g_stop="47054" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1066" r_stop="1128" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="47055" i_stop="47127" i_length="73">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="47128" g_stop="47204" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1129" r_stop="1205" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="47205" i_stop="47680" i_length="476">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="47681" g_stop="47753" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1206" r_stop="1278" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="47754" i_stop="48182" i_length="429">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="48183" g_stop="48721" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1279" r_stop="1817" r_length="539" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1818" polyA_stop="1836"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E746278" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1817</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43930" e_stop="44259"/>
          <exon e_start="44361" e_stop="44452"/>
          <exon e_start="44648" e_stop="44723"/>
          <exon e_start="45069" e_stop="45131"/>
          <exon e_start="45445" e_stop="45574"/>
          <exon e_start="45701" e_stop="45786"/>
          <exon e_start="45877" e_stop="46002"/>
          <exon e_start="46321" e_stop="46425"/>
          <exon e_start="46515" e_stop="46571"/>
          <exon e_start="46992" e_stop="47054"/>
          <exon e_start="47128" e_stop="47204"/>
          <exon e_start="47681" e_stop="47753"/>
          <exon e_start="48183" e_stop="48721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCGGCGACAGCATAGCCTAAGCTCCTTCTTCAGCAAGGAGAACTGAGCTTAAGTATAGTAATATCTTTCAATCCGCTTGAACTTTGTAGTCCAAGAGAACGGAGCTTTTAAGCTAGAAACTTTAATGGAGTTAACTTTCCCAGTGAAAGCTCAGTTATTTGGCTCCAAAATTGGTCACAAATCTCTAAGCTACTCAACTTCAGTAAAATTCTACCAGAAAGTATCTCGTCCTCAATTTTCAGCATGTGGAATCAGGGTTCGTTCGGAATTTGACCATAAAATCAATGGCGCTTTCTCTCCTGATTCTGACGCTCGGATTCTCGACCGGGTATCTCTTTCTCTCTCTACATATGTTTGTATTTATAGTTCTGTATGTTGCTTTACTGAAGAATTCCATGTGACTGACTTCCCTAACTCCTCCTGCTTCAGCAAAAAGCATTGGATGCTGCAATGAACGATATAAACAGCTCGTTTGGCAAAGGAAGCGTTACTAGATTGGGTAGTGCTGGCGGAGCTCTGGTGTATGTAATTTTTTTACTGAATTCAAAAAAAGTTATATTTAGTTTCTGCACAGGAACCATGTCGAAACAAACATGAAATGTTTTGGGGAAAAGAAGCAGAAAATGAAAATGGAGAAAAATATTCTGCCCAAAATTTTGATCATTGTTAGACTATATCATTCTTACAAGCACTTGTGTATCTGCTTCTTTATGCAGTGAAACTTTTCCGAGTGGCTGCTTGACGCTAGACTTTGCTTTAGGTGGTGGCATTCCCAAAGGCAGAATTGTTGAGGTTTAAATTTCTATCTTTTTCATTTGTATTTTCAGTATGCATTAGTTATTACTGGTTATTCGCCATCTATTTGGTTTCAAATGCTTGGCTGCTTAGTTATTACTAACTTTTGGTTTTGATTACACATAGTGGACTAACTCCTACATGAAGATGAATAGAACAGTTATATTGACCTGTTAATAGAGTGAGTGCGTTAGAAATTTACTTATTTCATTAATAGGCTGGGGTATTTGATTCTGATGTTTGTCCACATCCTGAACTTCTCAACTGATGTGAGCATGTGGAATATTAACAAGGTTGCTGCAATTTGTTGTCTAATTGCTTTCCTCATATTTTTCTTTACAGATATATGGGCCCGAAAGTAGTGGAAAGACTACCTTAGCTCTCCATGCTATTGCAGAAGTACAGGTGCAGTATGTGTTTGGTTTATTCTACTCATCAGCTTGGAACTTCTATAGGCATGGGGCTGCACTTGGAAGGGGAGGGGGCATTTGATTGTTTGGATGAAAAAGGAAGTCATATGCTTCTATCTTACAGATGAAGTGAAAGAAAATAATGGACAATTTGGAAGTCTAGAAAGCAAACTTAGAATCCTTTCCAGCATCCATTGGAGCTTTATTATTGTGACCAATCCACTGAAACCACTTGCCTTAGGCTTATTACTGAAAATGTTCTCATGTAAAAGGAGACAGATTATAAAATGTTAAATATTGTTATGCAGAAGCTAGGAGGCAATGCAATGCTTGTTGATGCTGAGCATGCTTTTGATCCTGCATACTCCAAAGCACTTGGAGTAGATGTAGAGAATTTGATCGTCTGCCAGCCTGATAATGGAGAGATGGCTCTAGAAAGTAACAACTTTTCCTTGTTTACACCATTAGAAATGATTTTTCAGTTTTTTGTGCTAGCAACCTTGTCAATAATCATGGTGGTCTTACTAGAGTTTGTACTTTCAACCAAACTTTTGTCTATCTCAGTCGCAGACCGGATGTGTAGATCAGGTGCCGTAGATCTCATTTGCATTGATTCAGTCTCAGCCCTTACTCCACGTGCTGAAATTGAGGTAAGCCAACATTTTAATTTTCTGAATTAATTAGAAAGCTTTAAATTGTTCCCACCAGTTCCTGATTTCACGGTCTCTTATTTTGTGCAGGGAGAAATCGGGATGCAGCAAATGGGTTTACAAGCACGCCTGATGAGTCAAGCTTTACGTAAAATGTCAGGCAATGCCTCCAAAGCTGGATGTACTCTTATATTCCTCAATCAGATAAGATACAAGGTATTCTTGACTTAGAAGTTGCACTGTTCTCTTTTCAAGTACTGAAACGGCAGCCTGGTGCATAAAGCATCTTGCGTTCACTAGGGTCCAGGAAAGGGCCAGATTGGGGTGTGATGTAGATAGCCTACCCTAATGTAAGCATTAGTGGCTGACTCGGTAGAACCCATGAGCTATAGGTCACAGGTGATGGATAATGTTGTCAATGAAAACTTGTCATTCTTGCTTCCATTGTGATTAACTTCATAAACTAGCATATTTCTCATCATAACTTGTGGACTTCACTTGATGAATGGAAGTAATTACTATGTTTCGAATCAGATTGGTGTTTATTACGGAAATCCTGAGGTCACAAGTGGAGGGATTGCCTTAAAGTTTTTCGCCTCCGTTCGACTTGAAATCCGTTCCACAGGGAAGATAAAATCTGTGAGTACAGAACTGCTCAGTCGGCTAGTAGATTTTTTATTTTACTCATTTAAGTCTCTTTATGAAAAAATTGTTGCTCTTCTTTTCAGGCAAAAGGAGACGAGGAAGTGGGTATTAAGGTCCGAGTGAGAGTTCAAAAGAGTAAGGTAAATCTGCTTCACGTCATAATTATTCAATGTGGTGCCATCAGTATTATGTTTGTGGGATGGAATACATATGGTAATGGTTCAGTTATACAAGTGTTCAGTGCTTAAAACTATAAAGCTGACATTTGCATAATAAAAGGTTATCATGGTTATTAAAATTTCCTGCACTGGAAGCATGGTAATTCCACTGTATGATCATTGTAAATAGGGGTATATTGTTGAAGACTTTATGTAGTTACTTTAGCGGTGCATCCACACGGAGGTCTCTTTTAGCGAAAACCTCTATTTATTTTAAAATTCTTTTAGCAAATACGGAGACATGAAAGAAAGTGCCAGTATACAGCTGGTCTTTTACTGTTTGCATCTTCTTGCTGATTATAGTGCCAACATGCTAATTGGTCTTATTATTATCCTTCTTAGGTTTCTAGACCATACAAGCAAGCAGAATTTGAAATTATGTTTGGAGAAGGAGTGAGCAAGCTGGTTTGTGGCATTCTTATCTTTCTTTTCCGTAGTGTTTGGCTCAAATTCTGTTCCTAAAATTGAGTTTTTGCAGGGTTGTGTATTAGATTGTGCGGAACTGATTGAGGTGGTGGCTAAGAAAGGTTCATGGTATAACTACGGAGAGCATAGGTTAGTACATTTTGCAGTTTTTGCTATATTATAGGGACTTCGAAGAAGCTTACTAAACTTTTAATTTATGAAACTCCATATCTCAATAGAAATATTTGCATATTTTTGTCATGACCGCTCAAGATTCTGGGAATTTTCCACATGCTGTACTAGAAGTGACAGAGCTTATACTCGAATGAAAAGAAAACAGCTTAGGAGAATTGATAGATTTCATACTTTATGTGGTTGCTGATGGAAATAATTTGAAGTACTAAGAATAAGCAAGAAATTGACTTTCAATGTGATTGAAAACTGTCTGAGTAACTGATTATTGTTTCAGAAGCTAAGATTAATCAAAGATTTGTCTTATACTTCAGTGAGCTGAGTCTTGCAAGGTTCATTACCAATATTATGTGACTCGGCACTGTTTCTTGATGTTTTACTATATTACTAATCTTGCTTGAGTCAGCCACTGATTCTTGATACGTTTAATGAAGGCTGGGACAGGGAAGAGAGAAAGCATTGCAATATTTGAGAGAAAATCCTCTTCTCTCTGAAGAAATAGAAAAGGTATCCTGCTCTCCTTTTTAGGTGCATTTGGTAAGAGTTTTAGTTGTCATACTGTGTAAGATACTAGTTCAATATCTAAACATAACCTGGGAGGTTTTATATGGAAGTAAATAACCTGATGATAAAAGAGAACTAATAAGCAAACAAAATTCTGTTTGCATATTTGGTATGTTTGTTAGCTGATCTGTTCTGGTGTCTTGAGCTTGTAGGCTGTTATTTTAGATGAAAAAATGATGGAAACTATGACCATTTTATGTGGTCATAGTTTTTGAGCTACAGCAAATGTATTTATGTGGTCATAGTACCTATACACGAAGATAATATTCTTTTATATCGTAGTTATTAGATTAACATATTGAGAGATTTCTTGCACACTGTTTATCAATATTTTGGAGGCGGAGAGATGACATTATCTATCTGCCTGAGCAGATGGTTCGGTCATCGGTGCTAGAGACAAACGGGTTTTTAGGCTCTTCTTCATTGAAACATCCACTGCCGCAGCTTCTAGAGGAAGATGCACTTCAAGAGATGCAATAACGCGGATCAGAGTTCTGCTTCAATTGATTATGATAACAGAGCATTTTTCAGCCAACATTGACATCCATATGTGATTCTACATTAGAAATGAGCAAAGTTGGGGACACTGCCAGATTTGCTTTGTATGAGACCATTTCTGTGCACTAGAGATTCTTGAAGAAAGGTGTATATTCTTGTAAGCTAATGGATCTTTGCACGAAGAGGAAGACACATACATCCTGAATTAACCAAACTGAAGAATTAGAGTTAAGGTGGTGAAAAGGAGTGTTAGCTCTTTGCTGCATATTTTGTCTTTGTTTTGGTTGTACTGGTAGCCAAAATTTTGAAAATCTGAAGATTTTTGCTTGTAACATTTGCATTGGAAGTACCACTCTAGTGTTGCGTTGGTATTATTATCCCATTAGCTCTATGCATTAAGAAATCTAGTAAAT</genome_strand>
        <mrna_strand>CTCCGGCGACAGCATAGCCTAAGCTCCTTCTTCAGCAAGGAGAACTGAGCTTAAGTATAGTAATATCTTTCAATCCGCTTGAACTTTGTAGTCCAAGAGAACGGAGCTTTTAAGCTAGAAACTTTAATGGAGTTAACTTTCCCAGTGAAAGCTCAGTTATTTGGCTCCAAAATTGGTCACAAATCTCTAAGCTACTCAACTTCAGTAAAATTCTACCAGAAAGTATCTCGTCCTCAATTTTCAGCATGTGGAATCAGGGTTCGTTCGGAATTTGACCATAAAATCAATGGCGCTTTCTCTCCTGATTCTGACGCTCGGATTCTCGACCGG.....................................................................................................CAAAAAGCATTGGATGCTGCAATGAACGATATAAACAGCTCGTTTGGCAAAGGAAGCGTTACTAGATTGGGTAGTGCTGGCGGAGCTCTGGT...................................................................................................................................................................................................TGAAACTTTTCCGAGTGGCTGCTTGACGCTAGACTTTGCTTTAGGTGGTGGCATTCCCAAAGGCAGAATTGTTGAG.........................................................................................................................................................................................................................................................................................................................................................ATATATGGGCCCGAAAGTAGTGGAAAGACTACCTTAGCTCTCCATGCTATTGCAGAAGTACAG.........................................................................................................................................................................................................................................................................................................................AAGCTAGGAGGCAATGCAATGCTTGTTGATGCTGAGCATGCTTTTGATCCTGCATACTCCAAAGCACTTGGAGTAGATGTAGAGAATTTGATCGTCTGCCAGCCTGATAATGGAGAGATGGCTCTAGAAA..............................................................................................................................TCGCAGACCGGATGTGTAGATCAGGTGCCGTAGATCTCATTTGCATTGATTCAGTCTCAGCCCTTACTCCACGTGCTGAAATTGAG..........................................................................................GGAGAAATCGGGATGCAGCAAATGGGTTTACAAGCACGCCTGATGAGTCAAGCTTTACGTAAAATGTCAGGCAATGCCTCCAAAGCTGGATGTACTCTTATATTCCTCAATCAGATAAGATACAAG..............................................................................................................................................................................................................................................................................................................................ATTGGTGTTTATTACGGAAATCCTGAGGTCACAAGTGGAGGGATTGCCTTAAAGTTTTTCGCCTCCGTTCGACTTGAAATCCGTTCCACAGGGAAGATAAAATCT.........................................................................................GCAAAAGGAGACGAGGAAGTGGGTATTAAGGTCCGAGTGAGAGTTCAAAAGAGTAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTAGACCATACAAGCAAGCAGAATTTGAAATTATGTTTGGAGAAGGAGTGAGCAAGCTG.........................................................................GGTTGTGTATTAGATTGTGCGGAACTGATTGAGGTGGTGGCTAAGAAAGGTTCATGGTATAACTACGGAGAGCATAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGGACAGGGAAGAGAGAAAGCATTGCAATATTTGAGAGAAAATCCTCTTCTCTCTGAAGAAATAGAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTCGGTCATCGGTGCTAGAGACAAACGGGTTTTTAGGCTCTTCTTCATTGAAACATCCACTGCCGCAGCTTCTAGAGGAAGATGCACTTCAAGAGATGCAATAACGCGGATCAGAGTTCTGCTTCAATTGATTATGATAACAGAGCATTTTTCAGCCAACATTGACATCCATATGTGATTCTACATTAGAAATGAGCAAAGTTGGGGACACTGCCAGATTTGCTTTGTATGAGACCATTTCTGTGCACTAGAGATTCTTGAAGAAAGGTGTATATTCTTGTAAGCTAATGGATCTTTGCACGAAGAGGAAGACACATACATCCTGAATTAACCAAACTGAAGAATTAGAGTTAAGGTGGTGAAAAGGAGTGTTAGCTCTTTGCTGCATATTTTGTCTTTGTTTTGGTTGTACTGGTAGCCAAAATTTTGAAAATCTGAAGATTTTTGCTTGTAACATTTGCATTGGAAGTACCACTCTAGTGTTGCGTTGGTATTATTATCCCATTAGCTCTATGCATTAAGAAATTTAGTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271963" ref_strand="+" ref_description="SGN-E271963 [cLEM-8-C6]">
      <seq>tccggcgacagcatagcctaagctccttcttcagcaaggagaactgagcttaagtatagtaatatctttcaatccgcttgaactttgtagtccaagagaacggagcttttaagctagaaactttaatggagttaactttcccagtgaaagctcagttatttggctccaaaattggtcacaaatctctaagctactcaacttcagtaaaattctaccagaaagtatctcgtcctcaattttcagcatgtggaatcagggttcgttcggaatttgaccataaaatcaatggcgctttctctcctgattctgacgctcggattctcgaccggcaaaaagcattggatgctgcaatgaacgatataaacagctcgtttggcaaaggaagcgttactagattgggtagtgctggcggagctctggttgaaacttttccgagtggctgcttgacgctagactttgctttaagtggtggcattcccaaaggcagaattgttgagatatatgggcccgaaagtagtggaaagactaccttagctctccatgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="43631" stop="45417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43931" g_stop="44259" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44260" i_stop="44360" i_length="101">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44361" g_stop="44452" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="421" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44453" i_stop="44647" i_length="195">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44648" g_stop="44723" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="497" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44724" i_stop="45068" i_length="345">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45069" g_stop="45117" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="546" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E271963" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43931" e_stop="44259"/>
          <exon e_start="44361" e_stop="44452"/>
          <exon e_start="44648" e_stop="44723"/>
          <exon e_start="45069" e_stop="45117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGGCGACAGCATAGCCTAAGCTCCTTCTTCAGCAAGGAGAACTGAGCTTAAGTATAGTAATATCTTTCAATCCGCTTGAACTTTGTAGTCCAAGAGAACGGAGCTTTTAAGCTAGAAACTTTAATGGAGTTAACTTTCCCAGTGAAAGCTCAGTTATTTGGCTCCAAAATTGGTCACAAATCTCTAAGCTACTCAACTTCAGTAAAATTCTACCAGAAAGTATCTCGTCCTCAATTTTCAGCATGTGGAATCAGGGTTCGTTCGGAATTTGACCATAAAATCAATGGCGCTTTCTCTCCTGATTCTGACGCTCGGATTCTCGACCGGGTATCTCTTTCTCTCTCTACATATGTTTGTATTTATAGTTCTGTATGTTGCTTTACTGAAGAATTCCATGTGACTGACTTCCCTAACTCCTCCTGCTTCAGCAAAAAGCATTGGATGCTGCAATGAACGATATAAACAGCTCGTTTGGCAAAGGAAGCGTTACTAGATTGGGTAGTGCTGGCGGAGCTCTGGTGTATGTAATTTTTTTACTGAATTCAAAAAAAGTTATATTTAGTTTCTGCACAGGAACCATGTCGAAACAAACATGAAATGTTTTGGGGAAAAGAAGCAGAAAATGAAAATGGAGAAAAATATTCTGCCCAAAATTTTGATCATTGTTAGACTATATCATTCTTACAAGCACTTGTGTATCTGCTTCTTTATGCAGTGAAACTTTTCCGAGTGGCTGCTTGACGCTAGACTTTGCTTTAGGTGGTGGCATTCCCAAAGGCAGAATTGTTGAGGTTTAAATTTCTATCTTTTTCATTTGTATTTTCAGTATGCATTAGTTATTACTGGTTATTCGCCATCTATTTGGTTTCAAATGCTTGGCTGCTTAGTTATTACTAACTTTTGGTTTTGATTACACATAGTGGACTAACTCCTACATGAAGATGAATAGAACAGTTATATTGACCTGTTAATAGAGTGAGTGCGTTAGAAATTTACTTATTTCATTAATAGGCTGGGGTATTTGATTCTGATGTTTGTCCACATCCTGAACTTCTCAACTGATGTGAGCATGTGGAATATTAACAAGGTTGCTGCAATTTGTTGTCTAATTGCTTTCCTCATATTTTTCTTTACAGATATATGGGCCCGAAAGTAGTGGAAAGACTACCTTAGCTCTCCATGCTA</genome_strand>
        <mrna_strand>TCCGGCGACAGCATAGCCTAAGCTCCTTCTTCAGCAAGGAGAACTGAGCTTAAGTATAGTAATATCTTTCAATCCGCTTGAACTTTGTAGTCCAAGAGAACGGAGCTTTTAAGCTAGAAACTTTAATGGAGTTAACTTTCCCAGTGAAAGCTCAGTTATTTGGCTCCAAAATTGGTCACAAATCTCTAAGCTACTCAACTTCAGTAAAATTCTACCAGAAAGTATCTCGTCCTCAATTTTCAGCATGTGGAATCAGGGTTCGTTCGGAATTTGACCATAAAATCAATGGCGCTTTCTCTCCTGATTCTGACGCTCGGATTCTCGACCGG.....................................................................................................CAAAAAGCATTGGATGCTGCAATGAACGATATAAACAGCTCGTTTGGCAAAGGAAGCGTTACTAGATTGGGTAGTGCTGGCGGAGCTCTGGT...................................................................................................................................................................................................TGAAACTTTTCCGAGTGGCTGCTTGACGCTAGACTTTGCTTTAAGTGGTGGCATTCCCAAAGGCAGAATTGTTGAG.........................................................................................................................................................................................................................................................................................................................................................ATATATGGGCCCGAAAGTAGTGGAAAGACTACCTTAGCTCTCCATGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E364845" ref_strand="+" ref_description="SGN-E364845 [cLPT-4-O4]">
      <seq>ggcgacagcatagcctaagctccttcttcagcaaggagaactgagcttaagtatagtaatatttttcaatccgcttgaactttgtagtccaagagaacggagcttttaagcttagactagaaacttcaatggagttaactttcccagtgaaagctcagttatttggctccaaaattggtcacaaatctctaagctactcaacttcagtaaaattctaccagaaagtatctcgccctcaattttcagcatgtggaatcagggttcgttcggaatttgaccataaaatcaatggcgctttctctcctgattctgacgctcggattctcgaccggcaaaaagcattggatgctgcaatgaacgatataaacagctcgtttggcaaaggaagcgttactagattgggtagtgccggcggagctctggttgaaacttttccgagtggctgcttgacgctagactttgctttaggtggtggcattcccaaaggcagaattgttgagatatatgggcccgaaagtagtggaaagactaccttagctctccatgctattgcagaagtacagaagctaggaggcaatgcaatgcttgttgatgctgagcatgcttttgatcctgcatactccaaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="43634" stop="45810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43934" g_stop="44259" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44260" i_stop="44360" i_length="101">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44361" g_stop="44452" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="424" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44453" i_stop="44647" i_length="195">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44648" g_stop="44723" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="500" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44724" i_stop="45068" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45069" g_stop="45131" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="563" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45132" i_stop="45444" i_length="313">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45445" g_stop="45510" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="629" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E364845" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43934" e_stop="44259"/>
          <exon e_start="44361" e_stop="44452"/>
          <exon e_start="44648" e_stop="44723"/>
          <exon e_start="45069" e_stop="45131"/>
          <exon e_start="45445" e_stop="45510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGACAGCATAGCCTAAGCTCCTTCTTCAGCAAGGAGAACTGAGCTTAAGTATAGTAATATCTTTCAATCCGCTTGAACTTTGTAGTCCAAGAGAACGGAGCTTTT-A----AG-CTAGAAACTTTAATGGAGTTAACTTTCCCAGTGAAAGCTCAGTTATTTGGCTCCAAAATTGGTCACAAATCTCTAAGCTACTCAACTTCAGTAAAATTCTACCAGAAAGTATCTCGTCCTCAATTTTCAGCATGTGGAATCAGGGTTCGTTCGGAATTTGACCATAAAATCAATGGCGCTTTCTCTCCTGATTCTGACGCTCGGATTCTCGACCGGGTATCTCTTTCTCTCTCTACATATGTTTGTATTTATAGTTCTGTATGTTGCTTTACTGAAGAATTCCATGTGACTGACTTCCCTAACTCCTCCTGCTTCAGCAAAAAGCATTGGATGCTGCAATGAACGATATAAACAGCTCGTTTGGCAAAGGAAGCGTTACTAGATTGGGTAGTGCTGGCGGAGCTCTGGTGTATGTAATTTTTTTACTGAATTCAAAAAAAGTTATATTTAGTTTCTGCACAGGAACCATGTCGAAACAAACATGAAATGTTTTGGGGAAAAGAAGCAGAAAATGAAAATGGAGAAAAATATTCTGCCCAAAATTTTGATCATTGTTAGACTATATCATTCTTACAAGCACTTGTGTATCTGCTTCTTTATGCAGTGAAACTTTTCCGAGTGGCTGCTTGACGCTAGACTTTGCTTTAGGTGGTGGCATTCCCAAAGGCAGAATTGTTGAGGTTTAAATTTCTATCTTTTTCATTTGTATTTTCAGTATGCATTAGTTATTACTGGTTATTCGCCATCTATTTGGTTTCAAATGCTTGGCTGCTTAGTTATTACTAACTTTTGGTTTTGATTACACATAGTGGACTAACTCCTACATGAAGATGAATAGAACAGTTATATTGACCTGTTAATAGAGTGAGTGCGTTAGAAATTTACTTATTTCATTAATAGGCTGGGGTATTTGATTCTGATGTTTGTCCACATCCTGAACTTCTCAACTGATGTGAGCATGTGGAATATTAACAAGGTTGCTGCAATTTGTTGTCTAATTGCTTTCCTCATATTTTTCTTTACAGATATATGGGCCCGAAAGTAGTGGAAAGACTACCTTAGCTCTCCATGCTATTGCAGAAGTACAGGTGCAGTATGTGTTTGGTTTATTCTACTCATCAGCTTGGAACTTCTATAGGCATGGGGCTGCACTTGGAAGGGGAGGGGGCATTTGATTGTTTGGATGAAAAAGGAAGTCATATGCTTCTATCTTACAGATGAAGTGAAAGAAAATAATGGACAATTTGGAAGTCTAGAAAGCAAACTTAGAATCCTTTCCAGCATCCATTGGAGCTTTATTATTGTGACCAATCCACTGAAACCACTTGCCTTAGGCTTATTACTGAAAATGTTCTCATGTAAAAGGAGACAGATTATAAAATGTTAAATATTGTTATGCAGAAGCTAGGAGGCAATGCAATGCTTGTTGATGCTGAGCATGCTTTTGATCCTGCATACTCCAAAGCA</genome_strand>
        <mrna_strand>GGCGACAGCATAGCCTAAGCTCCTTCTTCAGCAAGGAGAACTGAGCTTAAGTATAGTAATATTTTTCAATCCGCTTGAACTTTGTAGTCCAAGAGAACGGAGCTTTTAAGCTTAGACTAGAAACTTCAATGGAGTTAACTTTCCCAGTGAAAGCTCAGTTATTTGGCTCCAAAATTGGTCACAAATCTCTAAGCTACTCAACTTCAGTAAAATTCTACCAGAAAGTATCTCGCCCTCAATTTTCAGCATGTGGAATCAGGGTTCGTTCGGAATTTGACCATAAAATCAATGGCGCTTTCTCTCCTGATTCTGACGCTCGGATTCTCGACCGG.....................................................................................................CAAAAAGCATTGGATGCTGCAATGAACGATATAAACAGCTCGTTTGGCAAAGGAAGCGTTACTAGATTGGGTAGTGCCGGCGGAGCTCTGGT...................................................................................................................................................................................................TGAAACTTTTCCGAGTGGCTGCTTGACGCTAGACTTTGCTTTAGGTGGTGGCATTCCCAAAGGCAGAATTGTTGAG.........................................................................................................................................................................................................................................................................................................................................................ATATATGGGCCCGAAAGTAGTGGAAAGACTACCTTAGCTCTCCATGCTATTGCAGAAGTACAG.........................................................................................................................................................................................................................................................................................................................AAGCTAGGAGGCAATGCAATGCTTGTTGATGCTGAGCATGCTTTTGATCCTGCATACTCCAAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246964" ref_strand="+" ref_description="SGN-E246964 [cLEF-41-G15]">
      <seq>tcttcagcaaggagaactgagcttaagtatagtaatatctttcaatccgcttgaactttgtagtccaagagaacggagcttttaagctagaaactttaatggagttaactttcccagtgaaagctcagttatttggctccaaaattggtcacaaatctctaagctactcaacttcagtaaaattctaccagaaagtatctcgtcctcaattttcagcatgtggaatcagggttcgttcggaatttgaccataaaatcaatggcgctttctctcctgattctgacgctcggattctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="43658" stop="44554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43958" g_stop="44254" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E246964" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>297</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43958" e_stop="44254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCAGCAAGGAGAACTGAGCTTAAGTATAGTAATATCTTTCAATCCGCTTGAACTTTGTAGTCCAAGAGAACGGAGCTTTTAAGCTAGAAACTTTAATGGAGTTAACTTTCCCAGTGAAAGCTCAGTTATTTGGCTCCAAAATTGGTCACAAATCTCTAAGCTACTCAACTTCAGTAAAATTCTACCAGAAAGTATCTCGTCCTCAATTTTCAGCATGTGGAATCAGGGTTCGTTCGGAATTTGACCATAAAATCAATGGCGCTTTCTCTCCTGATTCTGACGCTCGGATTCTCG</genome_strand>
        <mrna_strand>TCTTCAGCAAGGAGAACTGAGCTTAAGTATAGTAATATCTTTCAATCCGCTTGAACTTTGTAGTCCAAGAGAACGGAGCTTTTAAGCTAGAAACTTTAATGGAGTTAACTTTCCCAGTGAAAGCTCAGTTATTTGGCTCCAAAATTGGTCACAAATCTCTAAGCTACTCAACTTCAGTAAAATTCTACCAGAAAGTATCTCGTCCTCAATTTTCAGCATGTGGAATCAGGGTTCGTTCGGAATTTGACCATAAAATCAATGGCGCTTTCTCTCCTGATTCTGACGCTCGGATTCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442112" ref_strand="+" ref_description="SGN-E442112 [cSTA-32-A15]">
      <seq>catcaaggagaactgagcttaagtatagcattatttttcaatccgcttgaactttgtagtcaaagagaacggagctttaagctagaaactttaatggagttaactttcccagtgaaagctcagttttttggctccaaaattggttacaaatcccaaagctactcaacttcagtaaaattctatcagaaagtatctcgtcctcaatttccagcacgtggaattagggttcgttcggaatttgaccataaaatcaatggcgctttctctcctgattctgacgctcggtttctcgaccggcaaaaagcattggatgctgcaatgaacgatataaacagctcgtttggcaaaggaagcgttactagattgggtagtgctggcggagctctggttgaaacttttccgagtggctgcttgacgctagactttgctttaggtggtggcattcccaaaggcagaattgttgagatatatgggcccgaaagtagtggaaagactaccttagctctccatgctattgcagaagtacagaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="43662" stop="45435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43962" g_stop="44259" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44260" i_stop="44360" i_length="101">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44361" g_stop="44452" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="389" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44453" i_stop="44647" i_length="195">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44648" g_stop="44723" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="465" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44724" i_stop="45068" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45069" g_stop="45135" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="532" r_length="67" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E442112" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E442112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43962" e_stop="44259"/>
          <exon e_start="44361" e_stop="44452"/>
          <exon e_start="44648" e_stop="44723"/>
          <exon e_start="45069" e_stop="45135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAAGGAGAACTGAGCTTAAGTATAGTAATATCTTTCAATCCGCTTGAACTTTGTAGTCCAAGAGAACGGAGCTTTTAAGCTAGAAACTTTAATGGAGTTAACTTTCCCAGTGAAAGCTCAGTTATTTGGCTCCAAAATTGGTCACAAATCTCTAAGCTACTCAACTTCAGTAAAATTCTACCAGAAAGTATCTCGTCCTCAATTTTCAGCATGTGGAATCAGGGTTCGTTCGGAATTTGACCATAAAATCAATGGCGCTTTCTCTCCTGATTCTGACGCTCGGATTCTCGACCGGGTATCTCTTTCTCTCTCTACATATGTTTGTATTTATAGTTCTGTATGTTGCTTTACTGAAGAATTCCATGTGACTGACTTCCCTAACTCCTCCTGCTTCAGCAAAAAGCATTGGATGCTGCAATGAACGATATAAACAGCTCGTTTGGCAAAGGAAGCGTTACTAGATTGGGTAGTGCTGGCGGAGCTCTGGTGTATGTAATTTTTTTACTGAATTCAAAAAAAGTTATATTTAGTTTCTGCACAGGAACCATGTCGAAACAAACATGAAATGTTTTGGGGAAAAGAAGCAGAAAATGAAAATGGAGAAAAATATTCTGCCCAAAATTTTGATCATTGTTAGACTATATCATTCTTACAAGCACTTGTGTATCTGCTTCTTTATGCAGTGAAACTTTTCCGAGTGGCTGCTTGACGCTAGACTTTGCTTTAGGTGGTGGCATTCCCAAAGGCAGAATTGTTGAGGTTTAAATTTCTATCTTTTTCATTTGTATTTTCAGTATGCATTAGTTATTACTGGTTATTCGCCATCTATTTGGTTTCAAATGCTTGGCTGCTTAGTTATTACTAACTTTTGGTTTTGATTACACATAGTGGACTAACTCCTACATGAAGATGAATAGAACAGTTATATTGACCTGTTAATAGAGTGAGTGCGTTAGAAATTTACTTATTTCATTAATAGGCTGGGGTATTTGATTCTGATGTTTGTCCACATCCTGAACTTCTCAACTGATGTGAGCATGTGGAATATTAACAAGGTTGCTGCAATTTGTTGTCTAATTGCTTTCCTCATATTTTTCTTTACAGATATATGGGCCCGAAAGTAGTGGAAAGACTACCTTAGCTCTCCATGCTATTGCAGAAGTACAGGTGC</genome_strand>
        <mrna_strand>CATCAAGGAGAACTGAGCTTAAGTATAGCATTATTTTTCAATCCGCTTGAACTTTGTAGTCAAAGAGAACGGAGC-TTTAAGCTAGAAACTTTAATGGAGTTAACTTTCCCAGTGAAAGCTCAGTTTTTTGGCTCCAAAATTGGTTACAAATCCCAAAGCTACTCAACTTCAGTAAAATTCTATCAGAAAGTATCTCGTCCTCAATTTCCAGCACGTGGAATTAGGGTTCGTTCGGAATTTGACCATAAAATCAATGGCGCTTTCTCTCCTGATTCTGACGCTCGGTTTCTCGACCGG.....................................................................................................CAAAAAGCATTGGATGCTGCAATGAACGATATAAACAGCTCGTTTGGCAAAGGAAGCGTTACTAGATTGGGTAGTGCTGGCGGAGCTCTGGT...................................................................................................................................................................................................TGAAACTTTTCCGAGTGGCTGCTTGACGCTAGACTTTGCTTTAGGTGGTGGCATTCCCAAAGGCAGAATTGTTGAG.........................................................................................................................................................................................................................................................................................................................................................ATATATGGGCCCGAAAGTAGTGGAAAGACTACCTTAGCTCTCCATGCTATTGCAGAAGTACAGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E569097" ref_strand="+" ref_description="SGN-E569097 [13483]">
      <seq>gagcttgagtatagcaatatttttcaatccgcttgaactttgtagtcaaagagaacggagctttaagctagaaactttaatggagttaactttcccagtgaaagctcagttttttggctccaaaattggttacaaatcccaaagctactcaacttcagtaaaattctatcagaaagtatctcgtcctcaatttccagcacgtggaattagggttcgttcggaatttgaccataaaatcaatggcgctttctctcctgattctgacgctcggtttctcgaccggcaaaaagcattggatgctgcaatgaacgatataaacagctcgtttggcaaaggaagcgttactagattgggtagtgctggcggtgctctggttgaaacttttccgagtggctgcttgacgctagactttgctttaggtggtggcattcccaaaggcagaattgttgagatatatgggcccgaaagtagtggaaagactaccttagctctccatgctattgcagaagtacagaagctaggaggcaatgcaatgtttgttgatgctgagcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="43676" stop="45783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43976" g_stop="44259" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44260" i_stop="44360" i_length="101">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44361" g_stop="44452" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="375" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44453" i_stop="44647" i_length="195">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44648" g_stop="44723" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="451" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44724" i_stop="45068" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45069" g_stop="45131" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="514" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45132" i_stop="45444" i_length="313">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45445" g_stop="45483" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="553" r_length="39" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E569097" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E569097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43976" e_stop="44259"/>
          <exon e_start="44361" e_stop="44452"/>
          <exon e_start="44648" e_stop="44723"/>
          <exon e_start="45069" e_stop="45131"/>
          <exon e_start="45445" e_stop="45483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTTAAGTATAGTAATATCTTTCAATCCGCTTGAACTTTGTAGTCCAAGAGAACGGAGCTTTTAAGCTAGAAACTTTAATGGAGTTAACTTTCCCAGTGAAAGCTCAGTTATTTGGCTCCAAAATTGGTCACAAATCTCTAAGCTACTCAACTTCAGTAAAATTCTACCAGAAAGTATCTCGTCCTCAATTTTCAGCATGTGGAATCAGGGTTCGTTCGGAATTTGACCATAAAATCAATGGCGCTTTCTCTCCTGATTCTGACGCTCGGATTCTCGACCGGGTATCTCTTTCTCTCTCTACATATGTTTGTATTTATAGTTCTGTATGTTGCTTTACTGAAGAATTCCATGTGACTGACTTCCCTAACTCCTCCTGCTTCAGCAAAAAGCATTGGATGCTGCAATGAACGATATAAACAGCTCGTTTGGCAAAGGAAGCGTTACTAGATTGGGTAGTGCTGGCGGAGCTCTGGTGTATGTAATTTTTTTACTGAATTCAAAAAAAGTTATATTTAGTTTCTGCACAGGAACCATGTCGAAACAAACATGAAATGTTTTGGGGAAAAGAAGCAGAAAATGAAAATGGAGAAAAATATTCTGCCCAAAATTTTGATCATTGTTAGACTATATCATTCTTACAAGCACTTGTGTATCTGCTTCTTTATGCAGTGAAACTTTTCCGAGTGGCTGCTTGACGCTAGACTTTGCTTTAGGTGGTGGCATTCCCAAAGGCAGAATTGTTGAGGTTTAAATTTCTATCTTTTTCATTTGTATTTTCAGTATGCATTAGTTATTACTGGTTATTCGCCATCTATTTGGTTTCAAATGCTTGGCTGCTTAGTTATTACTAACTTTTGGTTTTGATTACACATAGTGGACTAACTCCTACATGAAGATGAATAGAACAGTTATATTGACCTGTTAATAGAGTGAGTGCGTTAGAAATTTACTTATTTCATTAATAGGCTGGGGTATTTGATTCTGATGTTTGTCCACATCCTGAACTTCTCAACTGATGTGAGCATGTGGAATATTAACAAGGTTGCTGCAATTTGTTGTCTAATTGCTTTCCTCATATTTTTCTTTACAGATATATGGGCCCGAAAGTAGTGGAAAGACTACCTTAGCTCTCCATGCTATTGCAGAAGTACAGGTGCAGTATGTGTTTGGTTTATTCTACTCATCAGCTTGGAACTTCTATAGGCATGGGGCTGCACTTGGAAGGGGAGGGGGCATTTGATTGTTTGGATGAAAAAGGAAGTCATATGCTTCTATCTTACAGATGAAGTGAAAGAAAATAATGGACAATTTGGAAGTCTAGAAAGCAAACTTAGAATCCTTTCCAGCATCCATTGGAGCTTTATTATTGTGACCAATCCACTGAAACCACTTGCCTTAGGCTTATTACTGAAAATGTTCTCATGTAAAAGGAGACAGATTATAAAATGTTAAATATTGTTATGCAGAAGCTAGGAGGCAATGCAATGCTTGTTGATGCTGAGCAT</genome_strand>
        <mrna_strand>GAGCTTGAGTATAGCAATATTTTTCAATCCGCTTGAACTTTGTAGTCAAAGAGAACGGAGC-TTTAAGCTAGAAACTTTAATGGAGTTAACTTTCCCAGTGAAAGCTCAGTTTTTTGGCTCCAAAATTGGTTACAAATCCCAAAGCTACTCAACTTCAGTAAAATTCTATCAGAAAGTATCTCGTCCTCAATTTCCAGCACGTGGAATTAGGGTTCGTTCGGAATTTGACCATAAAATCAATGGCGCTTTCTCTCCTGATTCTGACGCTCGGTTTCTCGACCGG.....................................................................................................CAAAAAGCATTGGATGCTGCAATGAACGATATAAACAGCTCGTTTGGCAAAGGAAGCGTTACTAGATTGGGTAGTGCTGGCGGTGCTCTGGT...................................................................................................................................................................................................TGAAACTTTTCCGAGTGGCTGCTTGACGCTAGACTTTGCTTTAGGTGGTGGCATTCCCAAAGGCAGAATTGTTGAG.........................................................................................................................................................................................................................................................................................................................................................ATATATGGGCCCGAAAGTAGTGGAAAGACTACCTTAGCTCTCCATGCTATTGCAGAAGTACAG.........................................................................................................................................................................................................................................................................................................................AAGCTAGGAGGCAATGCAATGTTTGTTGATGCTGAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365696" ref_strand="+" ref_description="SGN-E365696 [cLPT-8-M5]">
      <seq>aggagagaacggagcttttaagcttagactagaaacttcaatggagttaactttcccagtgaaagctcagttatttggctccaaaattggtcacaaatctctaagctactcaacttcagtaaaattctaccagaaagtatctcgccctcaattttcagcatgtggaatcagggttcgttcggaatttgaccataaaatcaatggcgctttctctcctgattctgacgctcggattctcgaccggcaaaaagcattggatgctgcaatgaacgatataaacagctcgtttggcaaaggaagcgttactagattggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="43725" stop="44731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44044" g_stop="44259" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="244" r_length="216" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44260" i_stop="44360" i_length="101">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44361" g_stop="44431" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="315" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E365696" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>287</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44044" e_stop="44259"/>
          <exon e_start="44361" e_stop="44431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGAAACTTTAATGGAGTTAACTTTCCCAGTGAAAGCTCAGTTATTTGGCTCCAAAATTGGTCACAAATCTCTAAGCTACTCAACTTCAGTAAAATTCTACCAGAAAGTATCTCGTCCTCAATTTTCAGCATGTGGAATCAGGGTTCGTTCGGAATTTGACCATAAAATCAATGGCGCTTTCTCTCCTGATTCTGACGCTCGGATTCTCGACCGGGTATCTCTTTCTCTCTCTACATATGTTTGTATTTATAGTTCTGTATGTTGCTTTACTGAAGAATTCCATGTGACTGACTTCCCTAACTCCTCCTGCTTCAGCAAAAAGCATTGGATGCTGCAATGAACGATATAAACAGCTCGTTTGGCAAAGGAAGCGTTACTAGATTGGG</genome_strand>
        <mrna_strand>CTAGAAACTTCAATGGAGTTAACTTTCCCAGTGAAAGCTCAGTTATTTGGCTCCAAAATTGGTCACAAATCTCTAAGCTACTCAACTTCAGTAAAATTCTACCAGAAAGTATCTCGCCCTCAATTTTCAGCATGTGGAATCAGGGTTCGTTCGGAATTTGACCATAAAATCAATGGCGCTTTCTCTCCTGATTCTGACGCTCGGATTCTCGACCGG.....................................................................................................CAAAAAGCATTGGATGCTGCAATGAACGATATAAACAGCTCGTTTGGCAAAGGAAGCGTTACTAGATTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E612602" ref_strand="+" ref_description="SGN-E612602 [62366]">
      <seq>ccttaaagtttttcgcctccggttcgacttgaaatccgttctacagggnaagataaaatctgcaaaaggagatgaggaagtgggcattaaggtccgagtgagagttcaaaagagtaaggtttctagaccatacaagcaagcagaatttgaaattatgtttggagaaggagtgagcaagctgggttgtgtattagattgtgctgaactgattgaggtggtggctaagaaaggttcatggtataactacggagagcataggctgggacagggacgagagaaagcattgcaatatttgagagaaaatcctcttctctctgaagaaatagaaaagatggttcggtcattggtgctagagacaacggggtttttaggctcttcttcattgaaacatccactgccgcagcttctggaggaagatgcacttcaagagatgcaataacatgaatcagagttctgcttcgacttcgactgattatgacaacagagcatttctcaaccaacattgacatccatctgagattctacattagaaatgagcaaaatcgaagcgtcactgccagatttgctttgtatgaaactatttctgtaccactatagattcttgaagaaagatgtatattcttgtaaactaaaaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="46067" stop="48774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46367" g_stop="46425" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46426" i_stop="46514" i_length="89">
            <donor d_prob="0.803" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46515" g_stop="46571" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="118" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46572" i_stop="46991" i_length="420">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46992" g_stop="47054" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="181" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47055" i_stop="47127" i_length="73">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47128" g_stop="47204" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="258" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47205" i_stop="47680" i_length="476">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47681" g_stop="47753" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="331" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47754" i_stop="48182" i_length="429">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48183" g_stop="48481" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="639" r_length="308" r_score="0.843"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E612602" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E612602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46367" e_stop="46425"/>
          <exon e_start="46515" e_stop="46571"/>
          <exon e_start="46992" e_stop="47054"/>
          <exon e_start="47128" e_stop="47204"/>
          <exon e_start="47681" e_stop="47753"/>
          <exon e_start="48183" e_stop="48481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTAAAGTTTTTCGCCTCC-GTTCGACTTGAAATCCGTTCCACAGGG-AAGATAAAATCTGTGAGTACAGAACTGCTCAGTCGGCTAGTAGATTTTTTATTTTACTCATTTAAGTCTCTTTATGAAAAAATTGTTGCTCTTCTTTTCAGGCAAAAGGAGACGAGGAAGTGGGTATTAAGGTCCGAGTGAGAGTTCAAAAGAGTAAGGTAAATCTGCTTCACGTCATAATTATTCAATGTGGTGCCATCAGTATTATGTTTGTGGGATGGAATACATATGGTAATGGTTCAGTTATACAAGTGTTCAGTGCTTAAAACTATAAAGCTGACATTTGCATAATAAAAGGTTATCATGGTTATTAAAATTTCCTGCACTGGAAGCATGGTAATTCCACTGTATGATCATTGTAAATAGGGGTATATTGTTGAAGACTTTATGTAGTTACTTTAGCGGTGCATCCACACGGAGGTCTCTTTTAGCGAAAACCTCTATTTATTTTAAAATTCTTTTAGCAAATACGGAGACATGAAAGAAAGTGCCAGTATACAGCTGGTCTTTTACTGTTTGCATCTTCTTGCTGATTATAGTGCCAACATGCTAATTGGTCTTATTATTATCCTTCTTAGGTTTCTAGACCATACAAGCAAGCAGAATTTGAAATTATGTTTGGAGAAGGAGTGAGCAAGCTGGTTTGTGGCATTCTTATCTTTCTTTTCCGTAGTGTTTGGCTCAAATTCTGTTCCTAAAATTGAGTTTTTGCAGGGTTGTGTATTAGATTGTGCGGAACTGATTGAGGTGGTGGCTAAGAAAGGTTCATGGTATAACTACGGAGAGCATAGGTTAGTACATTTTGCAGTTTTTGCTATATTATAGGGACTTCGAAGAAGCTTACTAAACTTTTAATTTATGAAACTCCATATCTCAATAGAAATATTTGCATATTTTTGTCATGACCGCTCAAGATTCTGGGAATTTTCCACATGCTGTACTAGAAGTGACAGAGCTTATACTCGAATGAAAAGAAAACAGCTTAGGAGAATTGATAGATTTCATACTTTATGTGGTTGCTGATGGAAATAATTTGAAGTACTAAGAATAAGCAAGAAATTGACTTTCAATGTGATTGAAAACTGTCTGAGTAACTGATTATTGTTTCAGAAGCTAAGATTAATCAAAGATTTGTCTTATACTTCAGTGAGCTGAGTCTTGCAAGGTTCATTACCAATATTATGTGACTCGGCACTGTTTCTTGATGTTTTACTATATTACTAATCTTGCTTGAGTCAGCCACTGATTCTTGATACGTTTAATGAAGGCTGGGACAGGGAAGAGAGAAAGCATTGCAATATTTGAGAGAAAATCCTCTTCTCTCTGAAGAAATAGAAAAGGTATCCTGCTCTCCTTTTTAGGTGCATTTGGTAAGAGTTTTAGTTGTCATACTGTGTAAGATACTAGTTCAATATCTAAACATAACCTGGGAGGTTTTATATGGAAGTAAATAACCTGATGATAAAAGAGAACTAATAAGCAAACAAAATTCTGTTTGCATATTTGGTATGTTTGTTAGCTGATCTGTTCTGGTGTCTTGAGCTTGTAGGCTGTTATTTTAGATGAAAAAATGATGGAAACTATGACCATTTTATGTGGTCATAGTTTTTGAGCTACAGCAAATGTATTTATGTGGTCATAGTACCTATACACGAAGATAATATTCTTTTATATCGTAGTTATTAGATTAACATATTGAGAGATTTCTTGCACACTGTTTATCAATATTTTGGAGGCGGAGAGATGACATTATCTATCTGCCTGAGCAGATGGTTCGGTCATCGGTGCTAGAGACAAACGGGTTTTTAGGCTCTTCTTCATTGAAACATCCACTGCCGCAGCTTCTAGAGGAAGATGCACTTCAAGAGATGCAATAACGCGGATCAGAGTTCTGCTTC-A-----ATTGATTATGATAACAGAGCATTTTTCAGCCAACATTGACATCCATATGTGATTCTACATTAGAAATGAGCAAAGTTG--GGGACACTGCCAGATTTGCTTTGTATGAGACCATTTCTGT-GCACTAGAGATTCTTGAAGAAAGGTGTATATTCTTGTAAGCTAATGGATCT</genome_strand>
        <mrna_strand>CCTTAAAGTTTTTCGCCTCCGGTTCGACTTGAAATCCGTTCTACAGGGNAAGATAAAATCT.........................................................................................GCAAAAGGAGATGAGGAAGTGGGCATTAAGGTCCGAGTGAGAGTTCAAAAGAGTAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTAGACCATACAAGCAAGCAGAATTTGAAATTATGTTTGGAGAAGGAGTGAGCAAGCTG.........................................................................GGTTGTGTATTAGATTGTGCTGAACTGATTGAGGTGGTGGCTAAGAAAGGTTCATGGTATAACTACGGAGAGCATAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGGACAGGGACGAGAGAAAGCATTGCAATATTTGAGAGAAAATCCTCTTCTCTCTGAAGAAATAGAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTCGGTCATTGGTGCTAGAGACAACGGGGTTTTTAGGCTCTTCTTCATTGAAACATCCACTGCCGCAGCTTCTGGAGGAAGATGCACTTCAAGAGATGCAATAACATGAATCAGAGTTCTGCTTCGACTTCGACTGATTATGACAACAGAGCATTTCTCAACCAACATTGACATCCATCTGAGATTCTACATTAGAAATGAGCAAAATCGAAGCGTCACTGCCAGATTTGCTTTGTATGAAACTATTTCTGTACCACTATAGATTCTTGAAGAAAGATGTATATTCTTGTAAACTAAAAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714777" ref_strand="+" ref_description="SGN-E714777 [FB12BF05]">
      <seq>agtttttcgcctcctttcgacttgaaatccgttccacagggaagataaaatctgcaaaaggagacgaggaagtgggtattaaggtccgagtgagagttcaaaagagtaaggtttctagaccatacaagcaagcagaatttgaaattatgtttggagaaggagtgagcaagctgggttgtgtattagattgtgcggaactgattgaggtggtggctaagaaaggttcatggtataactacggagagcataggctgggacagggaagagagaaagcattgcaatatttgagagaaaatcctcttctctctgaagaaatagaaaagatggttcggtcatcggtgctagagacaaacgggtttttaggctcttcttcattgaaacatccactgccgcagcttctagaggaagatgcacttcaagagatgcaataacgcggatcagagttctgcttcaattgattatgataacagagcatttttcagccaacattgacatccatatgtgattctacattagaaatgagcaaagttggggacactgccagatttgctttgtatgagaccatttctgtgcactagagattcttgaagaaaggtgtatattcttgtaagctaatggatctttgcacgaagaggaagacacatacatcctgaattaaccaaactgaagaattagagttaaggtggtgaaaaggagtgttagctctttgctgcatattttgtctttgttttggttgtactggtagccaaaattttgaaaatctgaagatttttgcttgtaacatttgcattggaagtaccactctagtgttgcgttggtattattatcccattagctctatgcattaagaaatctagtaaaatatttgtctggtgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="46073" stop="49034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46373" g_stop="46425" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46426" i_stop="46514" i_length="89">
            <donor d_prob="0.803" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46515" g_stop="46571" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="110" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46572" i_stop="46991" i_length="420">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46992" g_stop="47054" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="173" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47055" i_stop="47127" i_length="73">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47128" g_stop="47204" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="250" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47205" i_stop="47680" i_length="476">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47681" g_stop="47753" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="323" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47754" i_stop="48182" i_length="429">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48183" g_stop="48729" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="871" r_length="548" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="876" polyA_stop="895"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E714777" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>870</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46373" e_stop="46425"/>
          <exon e_start="46515" e_stop="46571"/>
          <exon e_start="46992" e_stop="47054"/>
          <exon e_start="47128" e_stop="47204"/>
          <exon e_start="47681" e_stop="47753"/>
          <exon e_start="48183" e_stop="48729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTTTCGCCTCCGTTCGACTTGAAATCCGTTCCACAGGGAAGATAAAATCTGTGAGTACAGAACTGCTCAGTCGGCTAGTAGATTTTTTATTTTACTCATTTAAGTCTCTTTATGAAAAAATTGTTGCTCTTCTTTTCAGGCAAAAGGAGACGAGGAAGTGGGTATTAAGGTCCGAGTGAGAGTTCAAAAGAGTAAGGTAAATCTGCTTCACGTCATAATTATTCAATGTGGTGCCATCAGTATTATGTTTGTGGGATGGAATACATATGGTAATGGTTCAGTTATACAAGTGTTCAGTGCTTAAAACTATAAAGCTGACATTTGCATAATAAAAGGTTATCATGGTTATTAAAATTTCCTGCACTGGAAGCATGGTAATTCCACTGTATGATCATTGTAAATAGGGGTATATTGTTGAAGACTTTATGTAGTTACTTTAGCGGTGCATCCACACGGAGGTCTCTTTTAGCGAAAACCTCTATTTATTTTAAAATTCTTTTAGCAAATACGGAGACATGAAAGAAAGTGCCAGTATACAGCTGGTCTTTTACTGTTTGCATCTTCTTGCTGATTATAGTGCCAACATGCTAATTGGTCTTATTATTATCCTTCTTAGGTTTCTAGACCATACAAGCAAGCAGAATTTGAAATTATGTTTGGAGAAGGAGTGAGCAAGCTGGTTTGTGGCATTCTTATCTTTCTTTTCCGTAGTGTTTGGCTCAAATTCTGTTCCTAAAATTGAGTTTTTGCAGGGTTGTGTATTAGATTGTGCGGAACTGATTGAGGTGGTGGCTAAGAAAGGTTCATGGTATAACTACGGAGAGCATAGGTTAGTACATTTTGCAGTTTTTGCTATATTATAGGGACTTCGAAGAAGCTTACTAAACTTTTAATTTATGAAACTCCATATCTCAATAGAAATATTTGCATATTTTTGTCATGACCGCTCAAGATTCTGGGAATTTTCCACATGCTGTACTAGAAGTGACAGAGCTTATACTCGAATGAAAAGAAAACAGCTTAGGAGAATTGATAGATTTCATACTTTATGTGGTTGCTGATGGAAATAATTTGAAGTACTAAGAATAAGCAAGAAATTGACTTTCAATGTGATTGAAAACTGTCTGAGTAACTGATTATTGTTTCAGAAGCTAAGATTAATCAAAGATTTGTCTTATACTTCAGTGAGCTGAGTCTTGCAAGGTTCATTACCAATATTATGTGACTCGGCACTGTTTCTTGATGTTTTACTATATTACTAATCTTGCTTGAGTCAGCCACTGATTCTTGATACGTTTAATGAAGGCTGGGACAGGGAAGAGAGAAAGCATTGCAATATTTGAGAGAAAATCCTCTTCTCTCTGAAGAAATAGAAAAGGTATCCTGCTCTCCTTTTTAGGTGCATTTGGTAAGAGTTTTAGTTGTCATACTGTGTAAGATACTAGTTCAATATCTAAACATAACCTGGGAGGTTTTATATGGAAGTAAATAACCTGATGATAAAAGAGAACTAATAAGCAAACAAAATTCTGTTTGCATATTTGGTATGTTTGTTAGCTGATCTGTTCTGGTGTCTTGAGCTTGTAGGCTGTTATTTTAGATGAAAAAATGATGGAAACTATGACCATTTTATGTGGTCATAGTTTTTGAGCTACAGCAAATGTATTTATGTGGTCATAGTACCTATACACGAAGATAATATTCTTTTATATCGTAGTTATTAGATTAACATATTGAGAGATTTCTTGCACACTGTTTATCAATATTTTGGAGGCGGAGAGATGACATTATCTATCTGCCTGAGCAGATGGTTCGGTCATCGGTGCTAGAGACAAACGGGTTTTTAGGCTCTTCTTCATTGAAACATCCACTGCCGCAGCTTCTAGAGGAAGATGCACTTCAAGAGATGCAATAACGCGGATCAGAGTTCTGCTTCAATTGATTATGATAACAGAGCATTTTTCAGCCAACATTGACATCCATATGTGATTCTACATTAGAAATGAGCAAAGTTGGGGACACTGCCAGATTTGCTTTGTATGAGACCATTTCTGTGCACTAGAGATTCTTGAAGAAAGGTGTATATTCTTGTAAGCTAATGGATCTTTGCACGAAGAGGAAGACACATACATCCTGAATTAACCAAACTGAAGAATTAGAGTTAAGGTGGTGAAAAGGAGTGTTAGCTCTTTGCTGCATATTTTGTCTTTGTTTTGGTTGTACTGGTAGCCAAAATTTTGAAAATCTGAAGATTTTTGCTTGTAACATTTGCATTGGAAGTACCACTCTAGTGTTGCGTTGGTATTATTATCCCATTAGCTCTATGCATTAAGAAATCTAGT-AAATATTTGTCT</genome_strand>
        <mrna_strand>AGTTTTTCGCCTCCTTTCGACTTGAAATCCGTTCCACAGGGAAGATAAAATCT.........................................................................................GCAAAAGGAGACGAGGAAGTGGGTATTAAGGTCCGAGTGAGAGTTCAAAAGAGTAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTAGACCATACAAGCAAGCAGAATTTGAAATTATGTTTGGAGAAGGAGTGAGCAAGCTG.........................................................................GGTTGTGTATTAGATTGTGCGGAACTGATTGAGGTGGTGGCTAAGAAAGGTTCATGGTATAACTACGGAGAGCATAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGGACAGGGAAGAGAGAAAGCATTGCAATATTTGAGAGAAAATCCTCTTCTCTCTGAAGAAATAGAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTCGGTCATCGGTGCTAGAGACAAACGGGTTTTTAGGCTCTTCTTCATTGAAACATCCACTGCCGCAGCTTCTAGAGGAAGATGCACTTCAAGAGATGCAATAACGCGGATCAGAGTTCTGCTTCAATTGATTATGATAACAGAGCATTTTTCAGCCAACATTGACATCCATATGTGATTCTACATTAGAAATGAGCAAAGTTGGGGACACTGCCAGATTTGCTTTGTATGAGACCATTTCTGTGCACTAGAGATTCTTGAAGAAAGGTGTATATTCTTGTAAGCTAATGGATCTTTGCACGAAGAGGAAGACACATACATCCTGAATTAACCAAACTGAAGAATTAGAGTTAAGGTGGTGAAAAGGAGTGTTAGCTCTTTGCTGCATATTTTGTCTTTGTTTTGGTTGTACTGGTAGCCAAAATTTTGAAAATCTGAAGATTTTTGCTTGTAACATTTGCATTGGAAGTACCACTCTAGTGTTGCGTTGGTATTATTATCCCATTAGCTCTATGCATTAAGAAATCTAGTAAAATATTTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716193" ref_strand="+" ref_description="SGN-E716193 [FB16BE06]">
      <seq>ggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttaaaaaaaaaaaaaaaattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaanaanttcggggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50660" stop="15561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50360" g_stop="50209" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="211" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="267" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="320" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="553" r_length="233" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48852" i_stop="48586" i_length="267">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48585" g_stop="48563" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="576" r_length="23" r_score="0.652"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48562" i_stop="48120" i_length="443">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.46"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="48119" g_stop="48056" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="640" r_length="64" r_score="0.469"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E716193" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50360" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
          <exon e_start="48585" e_stop="48563"/>
          <exon e_start="48119" e_stop="48056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGTGTAAGGAATTCCTGCAACGATCTCAAATAACAATAATATATGAGTTCACAGACAAATATTTACTAGATTTCTTAATGCATAGAGCTAATGGGATAATAATACCAACGCAACACTAGAGTGGTACTTCCAATGCAAATGTTACAAGCAAAAATCTTCAGATTTTCAAAATTTTGGCTACCAGTACAACCAAAACAAAGACAAAATATGCAGCAAAGAGCTAACACTCCTTTTCACCACCTTAACTCTAATTCTTCAGTTTGGTTAATTCAGGATGTATGTGTCTTCCTCTTCGTGCAAAGATCCATTAGCTTACAAGAATATACACCTTTCTTCAAGAATCTCTAGTGCACAGAAATGGTCTCATACAAAGCAAATCTGGCAGTGTCCCCAACTTTGCTCATTTCTAATGTAGAATCACATATGGATGTCAATGTTGGCTGAAAAATGCTCTGTTATCATAATCAATTGAAGCAGAACTCTGATCCGCGTTATTGCATCTCTTGAAGTGCATCTTCCTCTAGAAGCTGCGGCAGTGGATGTTTCAATGAAGAAGAGCCTAAAAACCCGTTTGTCTCTAGCACCGATGACCGAACCATCTGCTCAGGCAGATAGATAATGTCATCTCTCCGCCTCCAAAATATTGATAAACAGTGTGCAAGAAATCTCTCAATATGTTAATCTAATAACTACGATATAAAAGAATATTATCTTCGTGTATAGGTA</genome_strand>
        <mrna_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTAAAA...........................................................................................................................................................................................................................................................................AAAAAAAAAAAATTAAAAAAAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAANTTCGGGGGGGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716122" ref_strand="+" ref_description="SGN-E716122 [FB16AG02]">
      <seq>ggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttataaatcttttaagtttagtcgtgattggattgccaaacagttataagctaatccaatattttgaagtgtaaggaattcctgcaacgatctcaaataacaataatatatgagttcacagacaaatatttactagaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="49888" stop="48412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49588" g_stop="49538" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="107" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="160" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49085" g_stop="48713" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="533" r_length="373" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="534" polyA_stop="552"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E716122" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49588" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGTGTAAGGAATTCCTGCAACGATCTCAAATAACAATAATATATGAGTTCACAGACAAATATTTACTAG</genome_strand>
        <mrna_strand>GGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGTGTAAGGAATTCCTGCAACGATCTCAAATAACAATAATATATGAGTTCACAGACAAATATTTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736091" ref_strand="+" ref_description="SGN-E736091 [LC04BC04]">
      <seq>ctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttataaatcttttaagtttagtcgtgattggattgccaaacagttataagctaatccaatattttgaagtgtaaggaattcctgcaacgatctcaaataacaataatatatgagttcacagacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50642" stop="48421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50342" g_stop="50209" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="193" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="249" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="302" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48715" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="673" r_length="371" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E736091" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50342" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGTGTAAGGAATTCCTGCAACGATCTCAAATAACAATAATATATGAGTTCACAGACAAATATTTACT</genome_strand>
        <mrna_strand>CTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGTGTAAGGAATTCCTGCAACGATCTCAAATAACAATAATATATGAGTTCACAGACAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347943" ref_strand="+" ref_description="SGN-E347943 [cTOF-31-J3]">
      <seq>taatgagctcacttgagcctaaaagcaacctttccctctggagatatactcagtgaaagggccttccatcacttactagctcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttataaatcttttaagtttagtcgtgattggattgccaaacagttataagctaatccaatattttgaagtgtaaggaattcctgcaacgatctcaaataacaataatatatgagttcacagacaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50649" stop="48421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50349" g_stop="50209" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.901"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="203" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="259" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="312" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48717" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="681" r_length="369" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E347943" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50349" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAGCTCA-TTGAGCCT-AAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGG-CTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGTGTAAGGAATTCCTGCAACGATCTCAAATAACAATAATATATGAGTTCACAGACAAATATTTA</genome_strand>
        <mrna_strand>TAATGAGCTCACTTGAGCCTAAAAGCAACCTTTCCCTCTGGAGATATACTCAGTGAAAGGGCCTTCCATCACTTACTAGCTCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGTGTAAGGAATTCCTGCAACGATCTCAAATAACAATAATATATGAGTTCACAGACAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720121" ref_strand="+" ref_description="SGN-E720121 [FC09DE07]">
      <seq>gggcgattggcggccaatcggccgaattgaggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttataaatcttttaagtttagtcgtgattggattgccaaacagttataagctaatccaatattttgaagtgtaaggaattcctgcaacgatctcaaataacaataatatatgagttcacagacnannnanaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50673" stop="48424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50368" g_stop="50209" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="191" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="250" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="306" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="359" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48724" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="721" r_length="362" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="725" polyA_stop="749"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E720121" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50368" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGTGTAAGGAATTCCTGCAACGATCTCAAATAACAATAATATATGAGTTCACAGACAA</genome_strand>
        <mrna_strand>GAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGTGTAAGGAATTCCTGCAACGATCTCAAATAACAATAATATATGAGTTCACAGACNA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309863" ref_strand="+" ref_description="SGN-E309863 [cLEZ-10-J17]">
      <seq>tgatgtttagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttataaatcttttaagtttagtcgtgattggattgccaaacagttataagctaatccaatattttgaagtgtaaggaattcctgcaacgatctcaaataacaataatatatgagttcacagnnnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="49691" stop="48428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49391" g_stop="49326" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="119" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49085" g_stop="48724" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="481" r_length="362" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="482" polyA_stop="519"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E309863" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49391" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGTGTAAGGAATTCCTGCAACGATCTCAAATAACAATAATATATGAGTTCACAGACAA</genome_strand>
        <mrna_strand>TGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGTGTAAGGAATTCCTGCAACGATCTCAAATAACAATAATATATGAGTTCACAGNNNA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343784" ref_strand="+" ref_description="SGN-E343784 [cTOF-12-G1]">
      <seq>agcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttataaatcttttaagtttagtcgtgattggattgccaaacagttataagctaatccaatattttgaagtgtaaggaattcctgcaacgatctcaaataacaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50656" stop="48439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50356" g_stop="50209" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="207" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="263" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="316" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48739" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="663" r_length="347" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E343784" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50356" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGTGTAAGGAATTCCTGCAACGATCTCAAATAACAATAATATA</genome_strand>
        <mrna_strand>AGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGTGTAAGGAATTCCTGCAACGATCTCAAATAACAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E744827" ref_strand="+" ref_description="SGN-E744827 [GI|1217641]">
      <seq>atggcaagcacagtaatgagctcattaagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggggctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttagggtcttataaatcttttaagtttagccgtgattggattgccaaacagttataagctaatccaatattttgaagtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50662" stop="48477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50362" g_stop="50209" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="213" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="269" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="322" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48776" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="632" r_length="310" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E744827" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50362" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGTGTA</genome_strand>
        <mrna_strand>ATGGCAAGCACAGTAATGAGCTCATTAAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGGGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGGTCTTATAAATCTTTTAAGTTTAGCCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734696" ref_strand="+" ref_description="SGN-E734696 [LB13BD08]">
      <seq>aagaagagaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttataaatcttttaagtttagtcgtgattggattgccaaacagttataagctaatccaatattttgaagtgtaaggaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50688" stop="48471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50388" g_stop="50209" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="239" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="295" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="348" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48779" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="655" r_length="307" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="662" polyA_stop="685"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E734696" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50388" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGT</genome_strand>
        <mrna_strand>AAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711811" ref_strand="+" ref_description="SGN-E711811 [FB03AC04]">
      <seq>gcacagtaatgcgcttattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttataaatcttttaagtttagtcgtgattggattgccaaacagttataagctaatccaatattttgaagtgtaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50655" stop="48471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50355" g_stop="50209" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="206" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="262" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="315" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48779" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="622" r_length="307" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="625" polyA_stop="643"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E711811" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50355" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGT</genome_strand>
        <mrna_strand>GCACAGTAATGCGCTTATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292205" ref_strand="+" ref_description="SGN-E292205 [cLET-1-J19]">
      <seq>agtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttataaatcttttaagtttagtcgtgattggattgccaaacagttataagctaattccatattttgaagtgtaaggaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50651" stop="48471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50351" g_stop="50209" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="311" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48779" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="618" r_length="307" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E292205" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50351" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGT</genome_strand>
        <mrna_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATTCCATATTTTGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258339" ref_strand="+" ref_description="SGN-E258339 [cLEG-49-D20]">
      <seq>taatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaagttcttataaatcttttaagtttagtcgcgattggattgcccaacagttataagctaatccaatattttgaagtgtaaagaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50649" stop="48471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50349" g_stop="50209" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="200" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="256" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="309" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48779" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="616" r_length="307" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="619" polyA_stop="635"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E258339" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50349" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGT</genome_strand>
        <mrna_strand>TAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAAGTTCTTATAAATCTTTTAAGTTTAGTCGCGATTGGATTGCCCAACAGTTATAAGCTAATCCAATATTTTGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200014" ref_strand="+" ref_description="SGN-E200014 [cLEB-9-I7]">
      <seq>gcacgagattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttataaatcttttaagtttagtcgtgattggattgccaaacagttataagctaatccaatattttgaagtgtaaggaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50639" stop="48471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50346" g_stop="50209" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="197" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="253" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="306" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48779" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="613" r_length="307" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="620" polyA_stop="637"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E200014" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50346" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGT</genome_strand>
        <mrna_strand>GCACGAGATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340400" ref_strand="+" ref_description="SGN-E340400 [cTOF-2-L6]">
      <seq>agtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttataaatcttttaagtttagtcgtgattggattgccaaacagttataagctaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50651" stop="48495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50351" g_stop="50209" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="311" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48796" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="601" r_length="290" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="602" polyA_stop="619"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E340400" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50351" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTA</genome_strand>
        <mrna_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336773" ref_strand="+" ref_description="SGN-E336773 [cTOE-5-C5]">
      <seq>gagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttataaatcttttaagtttagtcgtgattggattgccaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50645" stop="48508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50345" g_stop="50209" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="196" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="252" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="305" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48808" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="583" r_length="278" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E336773" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50345" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAAC</genome_strand>
        <mrna_strand>GAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267754" ref_strand="+" ref_description="SGN-E267754 [cLEI-12-L21]">
      <seq>gaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttataaatcttttaagtttagtcgtgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50666" stop="48522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50366" g_stop="50209" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="217" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="273" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="326" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48823" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="589" r_length="263" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="590" polyA_stop="609"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E267754" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50366" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTG</genome_strand>
        <mrna_strand>GAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730673" ref_strand="+" ref_description="SGN-E730673 [LA24DC11]">
      <seq>cgctatcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttataaatcttttaagtttagtcgtgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50659" stop="48522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50360" g_stop="50209" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="211" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="267" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="320" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48823" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="583" r_length="263" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="584" polyA_stop="593"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E730673" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50360" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTG</genome_strand>
        <mrna_strand>CGCTATCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733537" ref_strand="+" ref_description="SGN-E733537 [LB10BB06]">
      <seq>ggtaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaacagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttataaatcttttaagtttagtcgtgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50660" stop="48522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50360" g_stop="50209" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="211" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="267" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="320" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48823" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="583" r_length="263" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="584" polyA_stop="593"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E733537" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50360" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTG</genome_strand>
        <mrna_strand>GGTAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAACAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284177" ref_strand="+" ref_description="SGN-E284177 [cLER-16-C19]">
      <seq>gtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttataaatcttttaagtttagtcgtgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="49672" stop="48522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49372" g_stop="49326" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="100" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49085" g_stop="48823" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="363" r_length="263" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="364" polyA_stop="373"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E284177" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49372" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTG</genome_strand>
        <mrna_strand>GTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E611127" ref_strand="+" ref_description="SGN-E611127 [60874]">
      <seq>aaaagaagaaaaaaggtataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactttggagaaaacatcagtgaaagggcttccatcacttgctaggtcttcttcttccttcaaagttgtggctagtggtgtcaagaagctcaagaccgacaaaccctatggaattaatggaagcatggccttgagagatgggcttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatttgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacagatgattggtctgcaagtggtgatgtgtatgttggaggtaccactggcttagccatatgggccgtgaccttggttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcacagtagatgttatccttgtattgtactattttaagttgtattccatgtaatcttttcaaaaatacttcaaaaatatttcctggcatcttgattaatatgtaattgctgtgattttactgtggataatattacacctaatgttactgtcttaggttcttataaatcttaaaaaaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50690" stop="48534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50390" g_stop="50209" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="240" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="296" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="349" r_length="53" r_score="0.925"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48827" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="615" r_length="266" r_score="0.830"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E611127" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E611127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50390" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTA--TTAAGTT-TA--AGTTGTATTC-CATGTTATCT-TTTC-AAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGT</genome_strand>
        <mrna_strand>AAAAGAAGAAAAAAGGT-ATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTTTGGAGAAAACATCAGTGAAAGGGCTTCCATCACTTGCTAGGTCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTCAAGAAGCTCAAGACCGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGCTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATTTGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACAGATGATTGGTCTGCAAGTGGTGATGTGTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCCGTGACCTTGGTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCACAGTAGATGTTATCCTTGTATTGTACTATTTTAAGTTGTATTCCATGTAATCTTTTCAAAAATACTTCAAAAATATTTCCTGGCATCTTGATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACACCTAATGTTACTGTCTTAGGTTCTTATAAATC-TTAAAAAAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285028" ref_strand="+" ref_description="SGN-E285028 [cLER-19-F17]">
      <seq>ttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttataaatctttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="49555" stop="48534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49338" g_stop="49326" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="66" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49085" g_stop="48828" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="324" r_length="258" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E285028" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49338" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAG</genome_strand>
        <mrna_strand>TTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345674" ref_strand="+" ref_description="SGN-E345674 [cTOF-18-D21]">
      <seq>gtaataggagataatggcaagcaccagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatnctaatgttgctgtttttaggttcttataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50675" stop="48542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50375" g_stop="50209" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="227" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="283" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="336" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48833" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="591" r_length="255" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E345674" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50375" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATAGGAGAAAATGGCAAGCA-CAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACAT-CTAATGTTGCTG-TTTTAGGTTCTTATAAATCTTTTAAG</genome_strand>
        <mrna_strand>GTAATAGGAGATAATGGCAAGCACCAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATNCTAATGTTGCTGTTTTTAGGTTCTTATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E412810" ref_strand="+" ref_description="SGN-E412810 [STM-16-J10]">
      <seq>ccaactttcactttggagaaaacatcagtgaaagggcttccatcacttgctagatcttcttcttccttcaaagttgtggctagtggtgtcaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatgggcttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacagatgagtggtctccaagtggtgatgtctatgttggaggtaccactggattagccatatgggccgtgaccttggttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcacagtagatgttatccttgtattgtactattttaagttgtattccatgtaatcttttcaaaaatacttcaaaatatttccaggcatcttgattaatatgtaattgctgtgattttactgtggataatattacacctaatgttgctgttttaggttcttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50626" stop="48542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50326" g_stop="50209" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="177" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="233" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="286" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48833" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="546" r_length="260" r_score="0.830"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E412810" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E412810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50326" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTA--TTAAGTT-TA--AGTTGTATTC-CATGTTATCT-TTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAG</genome_strand>
        <mrna_strand>CCAACTTTCACTTTGGAGAAAACATCAGTGAAAGGGCTTCCATCACTTGCTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTCAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGCTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACAGATGAGTGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGATTAGCCATATGGGCCGTGACCTTGGTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCACAGTAGATGTTATCCTTGTATTGTACTATTTTAAGTTGTATTCCATGTAATCTTTTCAAAAATACTTCAAAATATTTCCAGGCATCTTGATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACACCTAATGTTGCTGTTTTAGGTTCTTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713882" ref_strand="+" ref_description="SGN-E713882 [FB09DG01]">
      <seq>gaggggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttatannnnnnnaaaaaaaaaaaaaanccctggggggggggccgggaccccatttcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50660" stop="48544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50364" g_stop="50209" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="215" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="271" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="324" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48834" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="576" r_length="252" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="577" polyA_stop="588"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E713882" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50364" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAA</genome_strand>
        <mrna_strand>GAGGGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATANNNNNNNAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E402698" ref_strand="+" ref_description="SGN-E402698 [PPC-8-O14]">
      <seq>gccaactttcactttggagaaaacatcagtgaaagggcttccatcacttgctagatcttcttcttccttcaaagttgtggctagtggtgtcaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatgggcttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacagatgagtggtctccaagtggtgatgtctatgttggaggtaccactggattagccatatgggccgtgaccttggttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcacagtagatgttatccttgtattgtactattttaagttgtattccatgtaatcttttcaaaatacttcaaaatatttccaggcatcttgattaatatgtaattgctgtgattttactgtggataatattacacctaatgttgctgttttaggttcttataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50627" stop="48542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50327" g_stop="50209" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="178" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="234" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="287" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48834" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="545" r_length="258" r_score="0.845"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E402698" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E402698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50327" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTA--TTAAGTT-TA--AGTTGTATTCCATGTTATCT-TTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAA</genome_strand>
        <mrna_strand>GCCAACTTTCACTTTGGAGAAAACATCAGTGAAAGGGCTTCCATCACTTGCTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTCAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGCTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACAGATGAGTGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGATTAGCCATATGGGCCGTGACCTTGGTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCACAGTAGATGTTATCCTTGTATTGTACTATTTTAAGTTGTATTCCATGTAATCTTTTCAAAATACTTCAAAATATTTCCAGGCATCTTGATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACACCTAATGTTGCTGTTTTAGGTTCTTATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E463780" ref_strand="+" ref_description="SGN-E463780 [cPRO-16-A3]">
      <seq>gaaaaaaggtataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactttggagaaaacatcagtgaaagggcttccatcacttgctaggtcttcttcttccttcaaagttgtggctagtggtgtcaagaagctcaagaccgacaaaccctatggaattaatggaagcatggccttgagagatgggcttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatttgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacagatgattggtctgcaagtggtgatgtgtatgttggaggtaccactggcttagccatatgggccgtgaccttggttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcacagtagatgttatccttgtattgtactattttaagttgtattccatgtaatcttttcaaaaatacttcaaaatatttcctggcatcttgattaatatgtaattgctgtgattttactgtggataatattacacctaatgttactgttttaggttcttataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50683" stop="48542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50383" g_stop="50209" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="233" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="289" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="342" r_length="53" r_score="0.925"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48835" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="600" r_length="258" r_score="0.841"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E463780" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E463780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50383" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTA--TTAAGTT-TA--AGTTGTATTC-CATGTTATCT-TTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTA</genome_strand>
        <mrna_strand>GAAAAAAGGT-ATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTTTGGAGAAAACATCAGTGAAAGGGCTTCCATCACTTGCTAGGTCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTCAAGAAGCTCAAGACCGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGCTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATTTGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACAGATGATTGGTCTGCAAGTGGTGATGTGTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCCGTGACCTTGGTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCACAGTAGATGTTATCCTTGTATTGTACTATTTTAAGTTGTATTCCATGTAATCTTTTCAAAAATACTTCAAAATATTTCCTGGCATCTTGATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACACCTAATGTTACTGTTTTAGGTTCTTATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739783" ref_strand="+" ref_description="SGN-E739783 [LC18DD02]">
      <seq>cagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50652" stop="48542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50352" g_stop="50209" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="203" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="259" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="312" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48835" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="563" r_length="251" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E739783" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50352" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTA</genome_strand>
        <mrna_strand>CAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349035" ref_strand="+" ref_description="SGN-E349035 [cTOF-29-J16]">
      <seq>agtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50651" stop="48542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50351" g_stop="50209" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="311" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48835" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="562" r_length="251" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E349035" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50351" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTA</genome_strand>
        <mrna_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288448" ref_strand="+" ref_description="SGN-E288448 [cLES-16-J24]">
      <seq>taatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaagttctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50649" stop="48542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50349" g_stop="50209" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="200" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="256" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="309" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48835" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="560" r_length="251" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E288448" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50349" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTA</genome_strand>
        <mrna_strand>TAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAAGTTCTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299336" ref_strand="+" ref_description="SGN-E299336 [cLET-43-L2]">
      <seq>ccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50587" stop="48542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50287" g_stop="50209" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="138" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="194" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="247" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48835" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="498" r_length="251" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E299336" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50287" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTA</genome_strand>
        <mrna_strand>CCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E401301" ref_strand="+" ref_description="SGN-E401301 [PPC-3-P17]">
      <seq>gtgagagcaaaagaagaaaaaaggtataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactttggagaaaacatcagtgaaagggcttccatcacttgctagatcttcttcttccttcaaagttgtggctagtggtgtcaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatgggcttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacagatgagtggtctccaagtggtgatgtctatgttggaggtaccactggattagccatatgggccgtgaccttggttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcacagtagatgttatccttgtattgtactattttaagttgtattccatgtaatcttttcaaaaatacttcaaaatatttccaggcatcttgattaatatgtaattgctgtgattttactgtggataatattacacctaatgttgctgttttaggttcttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50696" stop="48542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50398" g_stop="50209" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="248" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="304" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="357" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48836" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="614" r_length="257" r_score="0.832"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E401301" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E401301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50398" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGAGCACAAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTA--TTAAGTT-TA--AGTTGTATTC-CATGTTATCT-TTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTT</genome_strand>
        <mrna_strand>GTGAGAGCAAAAGAAGAAAAAAGGT-ATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTTTGGAGAAAACATCAGTGAAAGGGCTTCCATCACTTGCTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTCAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGCTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACAGATGAGTGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGATTAGCCATATGGGCCGTGACCTTGGTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCACAGTAGATGTTATCCTTGTATTGTACTATTTTAAGTTGTATTCCATGTAATCTTTTCAAAAATACTTCAAAATATTTCCAGGCATCTTGATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACACCTAATGTTGCTGTTTTAGGTTCTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268652" ref_strand="+" ref_description="SGN-E268652 [cLEM-9-I17]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattntactgtggataatattacatctaatgttgctgttttaggttcttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50659" stop="48542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48836" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="569" r_length="250" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E268652" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTT</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTNTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296586" ref_strand="+" ref_description="SGN-E296586 [cLET-39-I15]">
      <seq>ggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="49880" stop="48542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49580" g_stop="49538" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="99" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="152" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49085" g_stop="48836" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="402" r_length="250" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E296586" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49580" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTT</genome_strand>
        <mrna_strand>GGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288133" ref_strand="+" ref_description="SGN-E288133 [cLES-7-G12]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaagttcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50659" stop="48542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48837" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="568" r_length="249" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E288133" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTT</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAAGTTCTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284257" ref_strand="+" ref_description="SGN-E284257 [cLER-16-D21]">
      <seq>aatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50648" stop="48542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50348" g_stop="50209" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="199" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="255" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="308" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48837" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="557" r_length="249" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E284257" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50348" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTT</genome_strand>
        <mrna_strand>AATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348544" ref_strand="+" ref_description="SGN-E348544 [cTOF-30-F8]">
      <seq>cttcttcttccttcaaaagttgtggctagtggtgttaagaagcttaagacctgacaaaaccctatggaattaaatggaagcatggccttgagatatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggataccagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgnttgctgttttaaggttcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50571" stop="48542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50271" g_stop="50209" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.87"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="126" r_length="60" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="183" r_length="57" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="236" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48837" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="487" r_length="251" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E348544" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50271" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCTTCCTTCAAA-GTTGTGGCTAGTGGTGTTAAGAAGCTTAAGA-CTGAC-AAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATT-AATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATA-CAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATG-TTGCTGTTTT-AGGTTCTTATAAATCTTT</genome_strand>
        <mrna_strand>CTTCTTCTTCCTTCAAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACCTGACAAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAAATGGAAGCATGGCCTTGAGATATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACCAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGNTTGCTGTTTTAAGGTTCTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348657" ref_strand="+" ref_description="SGN-E348657 [cTOF-30-F7]">
      <seq>taataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50674" stop="48542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50374" g_stop="50209" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="225" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="281" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="334" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48838" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="582" r_length="248" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E348657" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50374" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTT</genome_strand>
        <mrna_strand>TAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324020" ref_strand="+" ref_description="SGN-E324020 [cTOC-3-A5]">
      <seq>agaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50682" stop="48550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50382" g_stop="50209" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="233" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="289" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="342" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48839" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="589" r_length="247" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E324020" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50382" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCT</genome_strand>
        <mrna_strand>AGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247418" ref_strand="+" ref_description="SGN-E247418 [cLEF-46-H6]">
      <seq>gaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaagttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50681" stop="48550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50381" g_stop="50209" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="232" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="288" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="341" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48839" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="588" r_length="247" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E247418" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50381" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCT</genome_strand>
        <mrna_strand>GAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAAGTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290078" ref_strand="+" ref_description="SGN-E290078 [cLET-5-M18]">
      <seq>aaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagatgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50680" stop="48550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50380" g_stop="50209" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="231" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="287" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="340" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48839" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="587" r_length="247" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E290078" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50380" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCT</genome_strand>
        <mrna_strand>AAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGATGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735845" ref_strand="+" ref_description="SGN-E735845 [LC03BE02]">
      <seq>cgaagaagagaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50688" stop="48550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50390" g_stop="50209" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="241" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="297" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="350" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48840" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="596" r_length="246" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E735845" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50390" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATC</genome_strand>
        <mrna_strand>CGAAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740374" ref_strand="+" ref_description="SGN-E740374 [LC21AF09]">
      <seq>caatagagaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50684" stop="48550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50389" g_stop="50209" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="239" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="295" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="348" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48840" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="594" r_length="246" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E740374" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50389" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATC</genome_strand>
        <mrna_strand>CAA-TAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739372" ref_strand="+" ref_description="SGN-E739372 [LC17AG04]">
      <seq>aagatgagaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50688" stop="48550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50388" g_stop="50209" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="239" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="295" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="348" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48840" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="594" r_length="246" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E739372" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50388" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATC</genome_strand>
        <mrna_strand>AAGATGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713592" ref_strand="+" ref_description="SGN-E713592 [FB09AC06]">
      <seq>ggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50676" stop="48550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50376" g_stop="50209" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="227" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="283" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="336" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48840" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="582" r_length="246" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E713592" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50376" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATC</genome_strand>
        <mrna_strand>GGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277419" ref_strand="+" ref_description="SGN-E277419 [cLER-3-F7]">
      <seq>agtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattgtactggggataatattacatctaatgttgctggtttaggttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50651" stop="48550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50351" g_stop="50209" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="311" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48840" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="557" r_length="246" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E277419" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50351" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATC</genome_strand>
        <mrna_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTGTACTGGGGATAATATTACATCTAATGTTGCTGGTTTAGGTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295473" ref_strand="+" ref_description="SGN-E295473 [cLET-23-C6]">
      <seq>agtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50651" stop="48550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50351" g_stop="50209" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="311" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48840" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="557" r_length="246" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E295473" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50351" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATC</genome_strand>
        <mrna_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285171" ref_strand="+" ref_description="SGN-E285171 [cLER-20-O4]">
      <seq>agtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattctactgtggataatattaacatctaatgttgctgttttaggttcttataaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50651" stop="48540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50351" g_stop="50209" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="311" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48840" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="558" r_length="247" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E285171" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50351" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATT-ACATCTAATGTTGCTGTTTTAGGTTCTTATAAATC</genome_strand>
        <mrna_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTCTACTGTGGATAATATTAACATCTAATGTTGCTGTTTTAGGTTCTTATAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289483" ref_strand="+" ref_description="SGN-E289483 [cLET-3-A11]">
      <seq>gttgatgcctcaagcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="49683" stop="48550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49564" g_stop="49538" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="83" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="136" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49085" g_stop="48840" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="382" r_length="246" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E289483" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49564" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATC</genome_strand>
        <mrna_strand>GTTGATGCCTCAAGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345575" ref_strand="+" ref_description="SGN-E345575 [cTOF-18-P2]">
      <seq>acaagaagagaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattntactgtggataatattacatctaatgttgctgttttaggttcttataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50690" stop="48542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50390" g_stop="50209" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="241" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="297" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="350" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48842" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="594" r_length="244" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E345575" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50390" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAA</genome_strand>
        <mrna_strand>ACAAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTNTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E402755" ref_strand="+" ref_description="SGN-E402755 [PPC-8-J19]">
      <seq>atggcaagcacagtaatgagctcattgagcctaaagccaactttcactttggagaaaacatcagtgaaagggcttccatcacttgctaggtcttcttcttccttcaaagttgtggctagtggtgtcaagaagctcaagaccgacaaaccctatggaattaatggaagcatggccttgagagatgggcttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatttgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacagatgattggtctgcaagtggtgatgtgtatgttggaggtaccactggcttagccatatgggccgtgaccttggttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcacagtagatgttatccttgtattgtactattttaagttgtattccatgtaatcttttcaaaaatacttcaaaatatttcctggcatcttgattaatatgtaattgctgtgattttactgtggataatattacacctaatgttactgttttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50662" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50362" g_stop="50209" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="213" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="269" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="322" r_length="53" r_score="0.925"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48842" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="573" r_length="251" r_score="0.828"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E402755" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E402755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50362" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTA--TTAAGTT-TA--AGTTGTATTC-CATGTTATCT-TTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAA</genome_strand>
        <mrna_strand>ATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTTTGGAGAAAACATCAGTGAAAGGGCTTCCATCACTTGCTAGGTCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTCAAGAAGCTCAAGACCGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGCTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATTTGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACAGATGATTGGTCTGCAAGTGGTGATGTGTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCCGTGACCTTGGTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCACAGTAGATGTTATCCTTGTATTGTACTATTTTAAGTTGTATTCCATGTAATCTTTTCAAAAATACTTCAAAATATTTCCTGGCATCTTGATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACACCTAATGTTACTGTTTTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733721" ref_strand="+" ref_description="SGN-E733721 [LB10DA12]">
      <seq>cgctagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50659" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50360" g_stop="50209" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="211" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="267" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="320" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48842" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="564" r_length="244" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E733721" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50360" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAA</genome_strand>
        <mrna_strand>CGCTAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735130" ref_strand="+" ref_description="SGN-E735130 [LB14CB01]">
      <seq>ggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50660" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50360" g_stop="50209" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="211" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="267" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="320" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48842" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="564" r_length="244" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E735130" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50360" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAA</genome_strand>
        <mrna_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293933" ref_strand="+" ref_description="SGN-E293933 [cLET-13-K6]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaagcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattntactgtggataatattacatctaatggtgctgttttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50659" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48842" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="563" r_length="244" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E293933" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293933" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAA</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAAGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTNTACTGTGGATAATATTACATCTAATGGTGCTGTTTTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345913" ref_strand="+" ref_description="SGN-E345913 [cTOF-24-H1]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgnttgctgttttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50659" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48842" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="564" r_length="245" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E345913" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATG-TTGCTGTTTTAGGTTCTTATAAA</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGNTTGCTGTTTTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295490" ref_strand="+" ref_description="SGN-E295490 [cLET-23-I4]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50659" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48842" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="563" r_length="244" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E295490" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAA</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293877" ref_strand="+" ref_description="SGN-E293877 [cLET-13-E15]">
      <seq>cacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctggtttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50654" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50354" g_stop="50209" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="205" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="261" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="314" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48842" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="558" r_length="244" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E293877" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50354" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAA</genome_strand>
        <mrna_strand>CACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGGTTTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348893" ref_strand="+" ref_description="SGN-E348893 [cTOF-29-E17]">
      <seq>ttgagcctaagccaactttcactctggagaaaaatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattaccatctaatgtttgctgttttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50638" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50338" g_stop="50209" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="187" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="243" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="296" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48842" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="542" r_length="246" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E348893" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50338" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTA-CATCTAATG-TTGCTGTTTTAGGTTCTTATAAA</genome_strand>
        <mrna_strand>TTGAGCCT-AAGCCAACTTTCACTCTGGAGAAAA-ATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACCATCTAATGTTTGCTGTTTTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732754" ref_strand="+" ref_description="SGN-E732754 [LB03AB08]">
      <seq>aagaagagaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttctannaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50688" stop="48542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50388" g_stop="50209" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="239" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="295" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="348" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48843" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="591" r_length="243" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="592" polyA_stop="604"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E732754" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50388" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAA</genome_strand>
        <mrna_strand>AAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTANNAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E408442" ref_strand="+" ref_description="SGN-E408442 [PPI-11-I13]">
      <seq>aagaaaaaaggtataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactttggagaaaacatcagtgaaagggcttccatcacttgctaggtcttcttcttccttcaaagttgtggctagtggtgtcaagaagctcaagaccgacaaaccctatggaattaatggaagcatggccttgagagatgggcttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatttgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacagatgattggtctgcaagtggtgatgtgtatgttggaggtaccactggcttagccatatgggccgtgaccttggttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcacagtagatgttatccttgtattgtactattttaagttgtattccatgtaatcttttcaaaaatacttcaaaatatttcctggcatcttgattaatatgtaattgctgtgattttactgtggataatattacacctaatgttactgttttaggttcttataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50685" stop="48542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50385" g_stop="50209" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="235" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="291" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="344" r_length="53" r_score="0.925"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48843" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="594" r_length="250" r_score="0.860"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="595" polyA_stop="608"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E408442" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E408442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50385" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTA--TTAAGTT-TA--AGTTGTATTC-CATGTTATCT-TTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAA</genome_strand>
        <mrna_strand>AAGAAAAAAGGT-ATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTTTGGAGAAAACATCAGTGAAAGGGCTTCCATCACTTGCTAGGTCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTCAAGAAGCTCAAGACCGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGCTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATTTGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACAGATGATTGGTCTGCAAGTGGTGATGTGTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCCGTGACCTTGGTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCACAGTAGATGTTATCCTTGTATTGTACTATTTTAAGTTGTATTCCATGTAATCTTTTCAAAAATACTTCAAAATATTTCCTGGCATCTTGATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACACCTAATGTTACTGTTTTAGGTTCTTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344528" ref_strand="+" ref_description="SGN-E344528 [cTOF-14-H14]">
      <seq>agaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttataaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50682" stop="48542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50382" g_stop="50209" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="233" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="289" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="342" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48843" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="585" r_length="243" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="586" polyA_stop="605"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E344528" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50382" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAA</genome_strand>
        <mrna_strand>AGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578470" ref_strand="+" ref_description="SGN-E578470 [85587]">
      <seq>gtataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactttggagaaaacatcagtgaaagggcttccatcacttgctaggtcttcttcttccttcaaagttgtggctagtggtgtcaagaagctcaagaccgacaaaccctatggaattaatggaagcatggccttgagagatgggcttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatttgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacagatgattggtctgcaagtggtgatgtgtatgttggaggtaccactggcttagccatatgggccgtgaccttggttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcacagtagaatgttatccttgtattgtactattttaagttgtattccatgtaatcttttcaaaaatacttcaaaatatttcctggcatcttgattaatatgtaattgctgtgattttactgtggataatattacacctaatgttactgttttaggttcttataagagaacaaaactcttgaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50675" stop="48543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50375" g_stop="50209" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="225" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="281" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="334" r_length="53" r_score="0.925"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48843" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="585" r_length="251" r_score="0.852"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E578470" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50375" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAG-ATGTTATCCTTGTATTGTACTA--TTAAGTT-TA--AGTTGTATTC-CATGTTATCT-TTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAA</genome_strand>
        <mrna_strand>GT-ATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTTTGGAGAAAACATCAGTGAAAGGGCTTCCATCACTTGCTAGGTCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTCAAGAAGCTCAAGACCGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGCTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATTTGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACAGATGATTGGTCTGCAAGTGGTGATGTGTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCCGTGACCTTGGTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCACAGTAGAATGTTATCCTTGTATTGTACTATTTTAAGTTGTATTCCATGTAATCTTTTCAAAAATACTTCAAAATATTTCCTGGCATCTTGATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACACCTAATGTTACTGTTTTAGGTTCTTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732830" ref_strand="+" ref_description="SGN-E732830 [LB03BA10]">
      <seq>cgggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttaaaaaaaaaaaccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50660" stop="48542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50362" g_stop="50209" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="213" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="269" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="322" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48843" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="565" r_length="243" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="575" polyA_stop="589"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E732830" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50362" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAA</genome_strand>
        <mrna_strand>CGGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317662" ref_strand="+" ref_description="SGN-E317662 [cTOB-8-C23]">
      <seq>ggcaagcacagtaatgagctcatggggcctaaagccaactttggctctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgagattttactgtggataatattacatctaatgttgctgttttaggttcttaaaaaaaaaaaaaaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50660" stop="48542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50360" g_stop="50209" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="211" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="267" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="320" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48843" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="563" r_length="243" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="564" polyA_stop="578"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E317662" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50360" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAA</genome_strand>
        <mrna_strand>GGCAAGCACAGTAATGAGCTCATGGGGCCTAAAGCCAACTTTGGCTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGAGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737285" ref_strand="+" ref_description="SGN-E737285 [LC09AF03]">
      <seq>ggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttannaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50660" stop="48542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50360" g_stop="50209" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="211" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="267" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="320" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48843" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="563" r_length="243" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="564" polyA_stop="580"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E737285" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50360" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAA</genome_strand>
        <mrna_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTANNA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738114" ref_strand="+" ref_description="SGN-E738114 [LC12BG04]">
      <seq>ggctagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50660" stop="48542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50360" g_stop="50209" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="211" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="267" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="320" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48843" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="563" r_length="243" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="564" polyA_stop="580"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E738114" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50360" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAA</genome_strand>
        <mrna_strand>GGCTAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296225" ref_strand="+" ref_description="SGN-E296225 [cLET-24-M18]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50659" stop="48542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48843" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="562" r_length="243" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="563" polyA_stop="573"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E296225" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAA</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200115" ref_strand="+" ref_description="SGN-E200115 [cLEB-7-F17]">
      <seq>gcacgagagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50645" stop="48542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50355" g_stop="50209" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="311" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48843" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="554" r_length="243" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="555" polyA_stop="567"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E200115" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50355" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAA</genome_strand>
        <mrna_strand>GCAC-G--A-GAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294833" ref_strand="+" ref_description="SGN-E294833 [cLET-17-N10]">
      <seq>agtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaatggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgctatccttgtattgtactattaagtttaagatgtattccatgttatctcttcaaaatatttcttggcatcttcattaatatgtaaatgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50651" stop="48542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50351" g_stop="50209" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="311" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48843" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="554" r_length="243" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="555" polyA_stop="565"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E294833" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50351" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAA</genome_strand>
        <mrna_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAT............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGCTATCCTTGTATTGTACTATTAAGTTTAAGATGTATTCCATGTTATCTCTTCAAAATATTTCTTGGCATCTTCATTAATATGTAAATGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297922" ref_strand="+" ref_description="SGN-E297922 [cLET-38-O8]">
      <seq>agtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttaaaaaaaaaaaaaataaaaaaaaaaanaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50651" stop="48542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50351" g_stop="50209" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="311" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48843" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="554" r_length="243" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="555" polyA_stop="576"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E297922" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50351" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAA</genome_strand>
        <mrna_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E461018" ref_strand="+" ref_description="SGN-E461018 [cPRO-34-E15]">
      <seq>gctcattgagcctaaagccaactttcactttggagaaaacatcagtgaaagggcttccatcacttgctaggtcttcttcttccttcaaagttgtggctagtggtgtcaagaagctcaagaccgacaaaccctatggaattaatggaagcatggccttgagagatgggcttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatttgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacagatgattggtctgcaagtggtgatgtgtatgttggaggtaccactggcttagccatatgggccgtgaccttggttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcacagtagatgttatccttgtattgtactattttaagttgtattccatgtaatcttttcaaaaatacttcaaaatatttcctggcatcttgattaatatgtaattgctgtgattttactgtggataatattacacctaatgttactgttttaggttcttataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50643" stop="48542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50343" g_stop="50209" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="194" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="250" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="303" r_length="53" r_score="0.925"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48843" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="553" r_length="250" r_score="0.860"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="554" polyA_stop="568"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E461018" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E461018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50343" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTA--TTAAGTT-TA--AGTTGTATTC-CATGTTATCT-TTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAA</genome_strand>
        <mrna_strand>GCTCATTGAGCCTAAAGCCAACTTTCACTTTGGAGAAAACATCAGTGAAAGGGCTTCCATCACTTGCTAGGTCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTCAAGAAGCTCAAGACCGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGCTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATTTGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACAGATGATTGGTCTGCAAGTGGTGATGTGTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCCGTGACCTTGGTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCACAGTAGATGTTATCCTTGTATTGTACTATTTTAAGTTGTATTCCATGTAATCTTTTCAAAAATACTTCAAAATATTTCCTGGCATCTTGATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACACCTAATGTTACTGTTTTAGGTTCTTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E222397" ref_strand="+" ref_description="SGN-E222397 [cLEL-16-M4](-)">
      <seq>aagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaaaatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50556" stop="48542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50256" g_stop="50209" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="107" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="163" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="216" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48843" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="459" r_length="243" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="460" polyA_stop="475"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E222397" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50256" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAA</genome_strand>
        <mrna_strand>AAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAAAATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339158" ref_strand="+" ref_description="SGN-E339158 [cTOF-6-H17]">
      <seq>ttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50553" stop="48542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50253" g_stop="50209" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="104" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="160" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="213" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48843" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="456" r_length="243" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="457" polyA_stop="475"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E339158" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50253" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAA</genome_strand>
        <mrna_strand>TTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293891" ref_strand="+" ref_description="SGN-E293891 [cLET-13-K17]">
      <seq>aagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttataaannnnaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50533" stop="48542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50233" g_stop="50209" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="84" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="140" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="193" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48843" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="436" r_length="243" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="442" polyA_stop="456"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E293891" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50233" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAA</genome_strand>
        <mrna_strand>AAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230491" ref_strand="+" ref_description="SGN-E230491 [cLEL-35-L20](-)">
      <seq>gcctcaggcagcaagccctagggaaagggtgtgtaccaaaatgtttgcaaatatgaagctaatgttgatgcatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacccaagtgctttggcgcaatacatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="49684" stop="48542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49558" g_stop="49538" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="77" r_length="56" r_score="0.911"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="130" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49085" g_stop="48843" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="373" r_length="243" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="374" polyA_stop="389"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E230491" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49558" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAA</genome_strand>
        <mrna_strand>GCCTCAGGCAGCAAGCCCTAG............................................................................................................................................................GGAAAGGGTGTGTACCAAAATGTTTGCAAATATGAAGCTAATGTTGATGCATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACCCAAGTGCTTTGGCGCAATACATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346919" ref_strand="+" ref_description="SGN-E346919 [cTOF-32-J3]">
      <seq>tgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttctaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="49673" stop="48542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49373" g_stop="49326" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="101" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49085" g_stop="48843" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="344" r_length="243" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="345" polyA_stop="365"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E346919" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49373" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAA</genome_strand>
        <mrna_strand>TGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E222306" ref_strand="+" ref_description="SGN-E222306 [cLEL-16-M2](-)">
      <seq>cagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattggactattaagtttaagttgtagtccatgttatcttttcaaaatatttctaggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttctcacaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="49552" stop="48542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49252" g_stop="49197" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49085" g_stop="48843" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="299" r_length="243" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="300" polyA_stop="313"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E222306" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49252" e_stop="49197"/>
          <exon e_start="49085" e_stop="48843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAA</genome_strand>
        <mrna_strand>CAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGGACTATTAAGTTTAAGTTGTAGTCCATGTTATCTTTTCAAAATATTTCTAGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTCACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339223" ref_strand="+" ref_description="SGN-E339223 [cTOF-4-A4]">
      <seq>caagaagagaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattntactgtggataatattacatctaatgttgctgttttaggttcaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50689" stop="48543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50389" g_stop="50209" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="240" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="296" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="349" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48844" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="591" r_length="242" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E339223" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50389" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATA</genome_strand>
        <mrna_strand>CAAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTNTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291302" ref_strand="+" ref_description="SGN-E291302 [cLET-2-M3]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50659" stop="48543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48845" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="560" r_length="241" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E291302" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTAT</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322593" ref_strand="+" ref_description="SGN-E322593 [cTOB-26-C5]">
      <seq>cacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50654" stop="48550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50354" g_stop="50209" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="205" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="261" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="314" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48845" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="555" r_length="241" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E322593" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50354" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTAT</genome_strand>
        <mrna_strand>CACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293993" ref_strand="+" ref_description="SGN-E293993 [cLET-13-P23]">
      <seq>aagagaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatggtatccttgtattggactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgctgctgatttaggttctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50685" stop="48546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50385" g_stop="50209" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="236" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="292" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="345" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48846" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="585" r_length="240" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E293993" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50385" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTA</genome_strand>
        <mrna_strand>AAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGGTATCCTTGTATTGGACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGCTGCTGATTTAGGTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284063" ref_strand="+" ref_description="SGN-E284063 [cLER-13-C16]">
      <seq>tcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagctgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggggatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaaggttaagttgcattccatggtatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgcgattgtactgtggataatattacatctaatgttgctgttttaggttctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50641" stop="48546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50341" g_stop="50209" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="192" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="248" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="301" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48846" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="541" r_length="240" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E284063" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50341" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTA</genome_strand>
        <mrna_strand>TCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGCTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGGGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGGTTAAGTTGCATTCCATGGTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGCGATTGTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228362" ref_strand="+" ref_description="SGN-E228362 [cLED-3-D13]">
      <seq>ctagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50577" stop="48546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50277" g_stop="50209" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="128" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="184" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="237" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48846" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="477" r_length="240" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E228362" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50277" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTA</genome_strand>
        <mrna_strand>CTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277270" ref_strand="+" ref_description="SGN-E277270 [cLEL-3-M20](-)">
      <seq>gtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttctgtggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttactcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="49385" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49085" g_stop="48846" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E277270" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>240</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49085" e_stop="48846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCT-TGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTA</genome_strand>
        <mrna_strand>GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTGTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTA-CTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286734" ref_strand="+" ref_description="SGN-E286734 [cLES-14-L9]">
      <seq>atgagctcattgagcttaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattatactgtggataatattacatctaatgttgctgttttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50647" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50347" g_stop="50209" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="198" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="254" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="307" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48848" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="545" r_length="238" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E286734" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50347" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCT</genome_strand>
        <mrna_strand>ATGAGCTCATTGAGCTTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTATACTGTGGATAATATTACATCTAATGTTGCTGTTTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322454" ref_strand="+" ref_description="SGN-E322454 [cTOB-26-M17]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaaatgtgctgttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50659" stop="48557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48850" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="555" r_length="236" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E322454" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTT</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAAATGTGCTGTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308234" ref_strand="+" ref_description="SGN-E308234 [cLEY-14-P8]">
      <seq>aagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50657" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50357" g_stop="50209" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="208" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="264" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="317" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48850" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="553" r_length="236" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E308234" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50357" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTT</genome_strand>
        <mrna_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720212" ref_strand="+" ref_description="SGN-E720212 [FC10AE12]">
      <seq>aatcggccgaattaattggagcacaagaagagaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50703" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50403" g_stop="50209" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="204" r_length="195" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="263" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="319" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="372" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="605" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="609" polyA_stop="659"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E720212" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50403" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAATTGGAGCACAAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AATTAATTGGAGCACAAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735091" ref_strand="+" ref_description="SGN-E735091 [LB14BF07]">
      <seq>actagaagagaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50690" stop="48550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50390" g_stop="50209" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="241" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="297" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="350" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="583" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="587" polyA_stop="599"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E735091" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50390" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>ACTAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E461087" ref_strand="+" ref_description="SGN-E461087 [cPRO-34-C2]">
      <seq>aaagaagaaaaaaggtataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactttggagaaaacatcagtgaaagggcttccatcacttgctaggtcttcttcttccttcaaagttgtggctagtggtgtcaagaagctcaagaccgacaaaccctatggaattaatggaagcatggccttgagagatgggcttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatttgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacagatgattggtctgcaagtggtgatgtgtatgttggaggtaccactggcttagccatatgggccgtgaccttggttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcacagtagatgttatccttgtattgtactattttaagttgtattccatgtaatcttttcaaaaatacttcaaaatatttcctggcatcttgattaatatgtaattgctgtgattttactgtggataatattacacctaatgttactgttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50688" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50389" g_stop="50209" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="239" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="295" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="348" r_length="53" r_score="0.925"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="588" r_length="240" r_score="0.850"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E461087" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E461087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50389" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTA--TTAAGTT-TA--AGTTGTATTC-CATGTTATCT-TTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AAAGAAGAAAAAAGGT-ATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTTTGGAGAAAACATCAGTGAAAGGGCTTCCATCACTTGCTAGGTCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTCAAGAAGCTCAAGACCGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGCTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATTTGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACAGATGATTGGTCTGCAAGTGGTGATGTGTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCCGTGACCTTGGTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCACAGTAGATGTTATCCTTGTATTGTACTATTTTAAGTTGTATTCCATGTAATCTTTTCAAAAATACTTCAAAATATTTCCTGGCATCTTGATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACACCTAATGTTACTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732535" ref_strand="+" ref_description="SGN-E732535 [LB02BG07]">
      <seq>cgataaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50681" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50384" g_stop="50209" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="234" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="290" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="343" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="576" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="577" polyA_stop="586"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E732535" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50384" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>CGAT-AAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733417" ref_strand="+" ref_description="SGN-E733417 [LB04DG03]">
      <seq>agagaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50684" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50384" g_stop="50209" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="235" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="291" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="344" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="577" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="578" polyA_stop="589"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E733417" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50384" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311482" ref_strand="+" ref_description="SGN-E311482 [cLEZ-18-F16]">
      <seq>agaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttnaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50682" stop="48557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50382" g_stop="50209" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="233" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="289" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="342" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="575" r_length="233" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E311482" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50382" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTNAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291300" ref_strand="+" ref_description="SGN-E291300 [cLET-2-K23]">
      <seq>agaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgtttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50682" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50382" g_stop="50209" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="233" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="289" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="342" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="575" r_length="233" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E291300" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50382" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238411" ref_strand="+" ref_description="SGN-E238411 [cLED-17-L3]">
      <seq>gaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctggtttaggttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50681" stop="48550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50381" g_stop="50209" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="232" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="288" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="341" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="574" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="578" polyA_stop="590"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E238411" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50381" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>GAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGGTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228504" ref_strand="+" ref_description="SGN-E228504 [cLED-3-P3]">
      <seq>gaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50681" stop="48550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50381" g_stop="50209" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="232" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="288" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="341" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="574" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="578" polyA_stop="590"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E228504" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50381" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>GAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E404984" ref_strand="+" ref_description="SGN-E404984 [PPC-16-E19]">
      <seq>aaaaggtataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactttggagaaaacatcagtgaaagggcttccatcacttgctagatcttcttcttccttcaaagttgtggctagtggtgtcaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatgggcttgatgcctcaagcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacagatgagtggtctccaagtggtgatgtctatgttggaggtaccactggattagccatatgggccgtgaccttggttggcattcttgcaagaggtgctctccttgtctacaacacaagtgctttggcacagtagatgttatcctggtattgtactattttaagttgtattccatgtaatcttttcaaaaatacttcaaaatatttccaggcatcttgattaatatgtaattgctgtgattttactgtggataatattacacctaatgttgctgttttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50680" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50380" g_stop="50209" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="230" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="286" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="339" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="579" r_length="240" r_score="0.837"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="580" polyA_stop="593"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E404984" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E404984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50380" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTA--TTAAGTT-TA--AGTTGTATTC-CATGTTATCT-TTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AAAAGGT-ATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTTTGGAGAAAACATCAGTGAAAGGGCTTCCATCACTTGCTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTCAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGCTTGATGCCTCAAGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACAGATGAGTGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGATTAGCCATATGGGCCGTGACCTTGGTTGGCATTCTTGCAAGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCACAGTAGATGTTATCCTGGTATTGTACTATTTTAAGTTGTATTCCATGTAATCTTTTCAAAAATACTTCAAAATATTTCCAGGCATCTTGATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACACCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290709" ref_strand="+" ref_description="SGN-E290709 [cLET-10-G16]">
      <seq>aaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50680" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50380" g_stop="50209" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="231" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="287" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="340" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="573" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E290709" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50380" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299209" ref_strand="+" ref_description="SGN-E299209 [cLET-43-E7]">
      <seq>aaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50680" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50380" g_stop="50209" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="231" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="287" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="340" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="573" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E299209" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50380" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293345" ref_strand="-" ref_description="SGN-E293345 [cLET-18-K11]">
      <seq>aggtaataggagaaaatggcaagctcagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50677" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50377" g_stop="50209" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="228" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="284" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="337" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="570" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="571" polyA_stop="589"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E293345" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293345" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="50377" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AGGTAATAGGAGAAAATGGCAAGCTCAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E406218" ref_strand="-" ref_description="SGN-E406218 [PPI-3-I7]">
      <seq>gcacgaggggcaagcacagtaatgagctcattgagcctaaagccaactttcactttggagaaaacatcagtgaaagggcttccatcacttgctagatcttcttcttccttcaaagttgtggctagtggtgtcaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatgggcttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacagatgagtggtctccaagtggtgatgtctatgttggaggtaccactggattagccatatgggccgtgaccttggttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcacagtagatgttatccttgtattgtactattttaagttgtattccatgtaatcttttcaaaaatacttcaaaatatttccaggcatcttgattaatatgtaattgctgtgattttactgtggataatattacacctaatgttgctgttttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50660" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50368" g_stop="50209" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="219" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="275" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="328" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="568" r_length="240" r_score="0.845"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="569" polyA_stop="586"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E406218" ref_strand="-">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E406218" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="50368" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTA--TTAAGTT-TA--AGTTGTATTC-CATGTTATCT-TTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>GCACGAGGGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTTTGGAGAAAACATCAGTGAAAGGGCTTCCATCACTTGCTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTCAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGCTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACAGATGAGTGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGATTAGCCATATGGGCCGTGACCTTGGTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCACAGTAGATGTTATCCTTGTATTGTACTATTTTAAGTTGTATTCCATGTAATCTTTTCAAAAATACTTCAAAATATTTCCAGGCATCTTGATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACACCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734777" ref_strand="+" ref_description="SGN-E734777 [LB13CC06]">
      <seq>gagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50668" stop="48550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50368" g_stop="50209" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="219" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="275" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="328" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="561" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="565" polyA_stop="581"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E734777" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50368" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>GAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734902" ref_strand="+" ref_description="SGN-E734902 [LB13DF04]">
      <seq>gagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50668" stop="48550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50368" g_stop="50209" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="219" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="275" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="328" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="561" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="565" polyA_stop="581"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E734902" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50368" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>GAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284319" ref_strand="+" ref_description="SGN-E284319 [cLER-16-L10]">
      <seq>agaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgtnnaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50667" stop="48558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50367" g_stop="50209" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="218" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="274" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="327" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="560" r_length="233" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E284319" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50367" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTNNAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292934" ref_strand="+" ref_description="SGN-E292934 [cLET-11-J6]">
      <seq>aaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttacttgggataatattacatctaatgttgctgttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50665" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50365" g_stop="50209" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="216" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="272" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="325" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="558" r_length="233" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E292934" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50365" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTTGGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729508" ref_strand="+" ref_description="SGN-E729508 [LA21BB05]">
      <seq>ggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50660" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50360" g_stop="50209" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="211" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="267" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="320" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="553" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E729508" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50360" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732712" ref_strand="+" ref_description="SGN-E732712 [LB02DG01]">
      <seq>ggctagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttanaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50660" stop="48550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50360" g_stop="50209" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="211" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="267" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="320" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="553" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="557" polyA_stop="574"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E732712" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50360" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>GGCTAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291825" ref_strand="+" ref_description="SGN-E291825 [cLET-7-E14]">
      <seq>ggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50660" stop="48550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50360" g_stop="50209" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="211" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="267" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="320" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="553" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="557" polyA_stop="569"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E291825" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50360" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728036" ref_strand="+" ref_description="SGN-E728036 [LA16CA10]">
      <seq>ggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50660" stop="48550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50360" g_stop="50209" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="211" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="267" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="320" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="553" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="557" polyA_stop="570"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E728036" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50360" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277651" ref_strand="+" ref_description="SGN-E277651 [cLER-6-I16]">
      <seq>gcttgcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctggtttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50659" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="552" r_length="233" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E277651" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>GCTTGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGGTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733739" ref_strand="+" ref_description="SGN-E733739 [LB10DC06]">
      <seq>ccgatcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttanaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50658" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="552" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="553" polyA_stop="571"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E733739" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>CCGATCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202901" ref_strand="+" ref_description="SGN-E202901 [cLEB-1-N7]">
      <seq>gcacgagcagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50659" stop="48550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="552" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="556" polyA_stop="572"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E202901" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>GCACGAGCAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348555" ref_strand="+" ref_description="SGN-E348555 [cTOF-30-J22]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatngttgctgttttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50659" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="553" r_length="234" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="554" polyA_stop="570"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E348555" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAAT-GTTGCTGTTTTAG</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATNGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290793" ref_strand="+" ref_description="SGN-E290793 [cLET-10-K11]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50659" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="552" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="553" polyA_stop="567"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E290793" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347080" ref_strand="+" ref_description="SGN-E347080 [cTOF-25-D24]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50659" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="552" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E347080" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299405" ref_strand="+" ref_description="SGN-E299405 [cLET-43-G24]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50659" stop="48550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="552" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="556" polyA_stop="572"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E299405" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716392" ref_strand="+" ref_description="SGN-E716392 [FB16DF12]">
      <seq>cttgcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagattaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttatcaaactgggacttgtccatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50655" stop="48541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50358" g_stop="50209" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="209" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="265" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="318" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="551" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E716392" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50358" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>CTTGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGATTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297705" ref_strand="+" ref_description="SGN-E297705 [cLET-28-A6]">
      <seq>caagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgctttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50658" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50358" g_stop="50209" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="209" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="265" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="318" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="551" r_length="233" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E297705" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50358" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>CAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGCTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294122" ref_strand="+" ref_description="SGN-E294122 [cLET-13-D19]">
      <seq>caagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50658" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50358" g_stop="50209" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="209" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="265" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="318" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="551" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E294122" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50358" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>CAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300516" ref_strand="+" ref_description="SGN-E300516 [cLET-45-N6]">
      <seq>aagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattggactattaagtgtaagctgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattctactgtggataatattacatctaatgttgctgttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50657" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50357" g_stop="50209" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="208" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="264" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="317" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="550" r_length="233" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E300516" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300516" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50357" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGGACTATTAAGTGTAAGCTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTCTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285234" ref_strand="+" ref_description="SGN-E285234 [cLER-20-F10]">
      <seq>aagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50657" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50357" g_stop="50209" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="208" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="264" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="317" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="550" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="551" polyA_stop="560"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E285234" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50357" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732625" ref_strand="+" ref_description="SGN-E732625 [LB02CG07]">
      <seq>aagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50657" stop="48550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50357" g_stop="50209" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="208" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="264" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="317" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="550" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="554" polyA_stop="577"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E732625" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50357" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346998" ref_strand="+" ref_description="SGN-E346998 [cTOF-25-A16]">
      <seq>agcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcacaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50656" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50356" g_stop="50209" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="207" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="263" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="316" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="549" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E346998" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50356" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCACAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340082" ref_strand="+" ref_description="SGN-E340082 [cTOF-3-L23]">
      <seq>agcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50656" stop="48550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50356" g_stop="50209" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="207" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="263" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="316" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="549" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="553" polyA_stop="568"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E340082" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50356" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733746" ref_strand="+" ref_description="SGN-E733746 [LB10DD01]">
      <seq>cgcattaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50654" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50354" g_stop="50209" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="205" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="261" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="314" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="547" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E733746" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50354" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>CGCATTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716042" ref_strand="+" ref_description="SGN-E716042 [FB15DH04]">
      <seq>cagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50652" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50352" g_stop="50209" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="203" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="259" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="312" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="545" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E716042" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50352" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>CAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289624" ref_strand="+" ref_description="SGN-E289624 [cLET-4-H23]">
      <seq>agtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactgggctagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattntactgtggataatattacatctaatggtgctggtttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50651" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50351" g_stop="50209" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="311" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="544" r_length="233" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="545" polyA_stop="554"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E289624" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50351" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGGCTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTNTACTGTGGATAATATTACATCTAATGGTGCTGGTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341815" ref_strand="+" ref_description="SGN-E341815 [cTOF-9-M18]">
      <seq>agtaatgagctcacttgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattntactgtggataatattacatctaatgttgctgttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50651" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50351" g_stop="50209" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="203" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="259" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="312" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="545" r_length="233" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E341815" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50351" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCA-TTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AGTAATGAGCTCACTTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTNTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293554" ref_strand="-" ref_description="SGN-E293554 [cLET-15-F19](-)">
      <seq>taatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgctttgcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50649" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50349" g_stop="50209" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="200" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="256" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="309" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="542" r_length="233" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="543" polyA_stop="556"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E293554" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293554" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="50349" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>TAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTTGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293553" ref_strand="+" ref_description="SGN-E293553 [cLET-15-F19]">
      <seq>taatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgctttgcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50649" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50349" g_stop="50209" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="200" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="256" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="309" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="542" r_length="233" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="543" polyA_stop="556"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E293553" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50349" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>TAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTTGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729929" ref_strand="+" ref_description="SGN-E729929 [LA22CB08]">
      <seq>tgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50646" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50346" g_stop="50209" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="197" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="253" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="306" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="539" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E729929" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50346" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>TGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200557" ref_strand="+" ref_description="SGN-E200557 [cLEB-8-H22]">
      <seq>gcacgagtgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctcaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50643" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50343" g_stop="50209" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="195" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="251" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="303" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="536" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="537" polyA_stop="556"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E200557" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50343" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTC-ATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>GCACGAGTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCT-CAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734792" ref_strand="+" ref_description="SGN-E734792 [LB13CD09]">
      <seq>gctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50643" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50343" g_stop="50209" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="194" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="250" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="303" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="536" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="537" polyA_stop="546"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E734792" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50343" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>GCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734293" ref_strand="+" ref_description="SGN-E734293 [LB12BB08]">
      <seq>aaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50607" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50307" g_stop="50209" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="158" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="214" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="267" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="500" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="501" polyA_stop="510"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E734293" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50307" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E218289" ref_strand="+" ref_description="SGN-E218289 [cLEL-23-H15](-)">
      <seq>gggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaacccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50593" stop="48550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50293" g_stop="50209" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="145" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="201" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="254" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="487" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="491" polyA_stop="509"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E218289" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50293" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAA-CCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>GGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226376" ref_strand="+" ref_description="SGN-E226376 [cLEL-26-A18](-)">
      <seq>tcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50572" stop="48550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50272" g_stop="50209" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="123" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="179" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="232" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="465" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="469" polyA_stop="489"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E226376" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50272" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>TCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228900" ref_strand="+" ref_description="SGN-E228900 [cLEL-29-M18](-)">
      <seq>agttgtggctagtggtgttaagaagcttaagactgacaaacccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50555" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50255" g_stop="50209" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="107" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="163" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="216" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="449" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="450" polyA_stop="467"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E228900" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50255" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAA-CCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226451" ref_strand="+" ref_description="SGN-E226451 [cLEL-26-A18](-)">
      <seq>agttgtggctagtggtgttagaagcttaagactgacaaaccctatgaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50555" stop="48550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50255" g_stop="50209" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="104" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="160" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="213" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="446" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="450" polyA_stop="470"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E226451" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50255" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AGTTGTGGCTAGTGGTGTT-AGAAGCTTAAGACTGACAAACCCTAT-....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E219602" ref_strand="+" ref_description="SGN-E219602 [cLEL-11-P4](-)">
      <seq>attaatggaagcatggccttgagagatggggttaatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtacccgctgtgattttactgtccccaatattacatctaatgttgctgtttttataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="49894" stop="48555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49594" g_stop="49538" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="113" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="166" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="399" r_length="233" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="401" polyA_stop="414"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E219602" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49594" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>ATTAATGGAAGCATGGCCTTGAGAGATGGGGTTAATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTACCCGCTGTGATTTTACTGTCCCCAATATTACATCTAATGTTGCTGTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235093" ref_strand="+" ref_description="SGN-E235093 [cLEL-6-E18](-)">
      <seq>agcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="49885" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49585" g_stop="49538" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="104" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="157" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="390" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="391" polyA_stop="406"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E235093" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49585" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E234613" ref_strand="+" ref_description="SGN-E234613 [cLEL-6-E18](-)">
      <seq>gcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="49884" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49584" g_stop="49538" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="103" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="156" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="389" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="390" polyA_stop="405"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E234613" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49584" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>GCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288405" ref_strand="+" ref_description="SGN-E288405 [cLES-16-J11]">
      <seq>ggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcatgcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctggtttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="49880" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49580" g_stop="49538" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="99" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="152" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="385" r_length="233" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="386" polyA_stop="397"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E288405" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49580" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>GGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATGCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGGTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296248" ref_strand="+" ref_description="SGN-E296248 [cLET-24-F6]">
      <seq>agagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgtttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="49873" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49573" g_stop="49538" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="92" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="145" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="378" r_length="233" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E296248" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49573" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217789" ref_strand="+" ref_description="SGN-E217789 [cLEL-23-H15](-)">
      <seq>gatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="49870" stop="48550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49570" g_stop="49538" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="89" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="142" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="375" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="379" polyA_stop="397"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E217789" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49570" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>GATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294253" ref_strand="+" ref_description="SGN-E294253 [cLET-14-I12]">
      <seq>atggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgtttttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="49869" stop="48555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49569" g_stop="49538" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="88" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="141" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="374" r_length="233" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="375" polyA_stop="392"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E294253" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49569" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>ATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228996" ref_strand="+" ref_description="SGN-E228996 [cLEL-29-M18](-)">
      <seq>tggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccattctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatctttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="49868" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49568" g_stop="49538" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="87" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="141" r_length="54" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="375" r_length="234" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="376" polyA_stop="393"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E228996" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49568" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCA-TCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATC-TTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>TGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATTCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221007" ref_strand="+" ref_description="SGN-E221007 [cLEL-22-J11](-)">
      <seq>tggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="49868" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49568" g_stop="49538" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="87" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="140" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="373" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="374" polyA_stop="389"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E221007" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49568" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>TGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230392" ref_strand="+" ref_description="SGN-E230392 [cLEL-35-G13](-)">
      <seq>tggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="49868" stop="48550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49568" g_stop="49538" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="87" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="140" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="373" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="377" polyA_stop="395"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E230392" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49568" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>TGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230828" ref_strand="+" ref_description="SGN-E230828 [cLEL-35-G12](-)">
      <seq>ggttatgcctcaggcagaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttgaaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaataaatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="49683" stop="48550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49565" g_stop="49538" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="82" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="135" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="368" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="372" polyA_stop="390"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E230828" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49565" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>GGTT-ATGCCTCAGGCA-GAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGAAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAAATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230467" ref_strand="+" ref_description="SGN-E230467 [cLEL-35-G12](-)">
      <seq>aagcccaagggaaagggtgtgtcccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="49683" stop="48550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49546" g_stop="49538" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="65" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="118" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="351" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="355" polyA_stop="373"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E230467" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49546" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTCCCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E222550" ref_strand="+" ref_description="SGN-E222550 [cLEL-16-K10](-)">
      <seq>agcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttgaaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="49683" stop="48550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49545" g_stop="49538" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="64" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="117" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="350" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="354" polyA_stop="372"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E222550" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49545" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGAAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217911" ref_strand="+" ref_description="SGN-E217911 [cLEL-23-D3](-)">
      <seq>agcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaccaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="49683" stop="48550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49545" g_stop="49538" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="64" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="117" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="350" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="360" polyA_stop="387"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E217911" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49545" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285747" ref_strand="-" ref_description="SGN-E285747 [cLES-5-K5]">
      <seq>gcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="49683" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49544" g_stop="49538" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="63" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="116" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="349" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="350" polyA_stop="379"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E285747" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285747" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="49544" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>GCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E218131" ref_strand="+" ref_description="SGN-E218131 [cLEL-23-D3](-)">
      <seq>aagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaataaatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaacccaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="49678" stop="48550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49378" g_stop="49326" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="106" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="339" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="350" polyA_stop="376"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E218131" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49378" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAAATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230896" ref_strand="+" ref_description="SGN-E230896 [cLEL-35-G13](-)">
      <seq>aaatatggagctaatgttgatggatacagtccccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaacaacacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="49654" stop="48550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49354" g_stop="49326" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="83" r_length="54" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="316" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="326" polyA_stop="338"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E230896" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49354" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGT-CCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286594" ref_strand="+" ref_description="SGN-E286594 [cLES-12-A12]">
      <seq>acacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttngctgttttannnaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="49538" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49238" g_stop="49197" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="276" r_length="234" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="279" polyA_stop="298"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E286594" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>275</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49238" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTT-GCTGTTTTAG</genome_strand>
        <mrna_strand>ACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTNGCTGTTTTAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E227868" ref_strand="+" ref_description="SGN-E227868 [cLEL-39-P6](-)">
      <seq>tgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttcctgtggataatattacatctaatgttgctgttttcaaccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="49365" stop="48555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49065" g_stop="48853" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="217" polyA_stop="234"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E227868" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>213</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49065" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>TGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTCCTGTGGATAATATTACATCTAATGTTGCTGTTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226297" ref_strand="+" ref_description="SGN-E226297 [cLEL-26-D3](-)">
      <seq>ggcacgaggcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="49338" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49047" g_stop="48853" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="195" polyA_stop="210"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E226297" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>195</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49047" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>GGCACGA-GGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226662" ref_strand="+" ref_description="SGN-E226662 [cLEL-26-D3](-)">
      <seq>ggcacgaggcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="49338" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49047" g_stop="48853" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="195" polyA_stop="210"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E226662" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>195</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49047" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>GGCACGA-GGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226668" ref_strand="+" ref_description="SGN-E226668 [cLEL-26-D14](-)">
      <seq>gtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatctttcaaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaataaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="49331" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49031" g_stop="48853" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="180" polyA_stop="194"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E226668" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>179</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49031" e_stop="48853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>GTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTCAAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E575301" ref_strand="-" ref_description="SGN-E575301 [34904]">
      <seq>agaaaacatcagtgaaagggcttccatcactttgctaggtcttcttcttccttcaaagttgtggctagtggtgtcaagaagctcaagaccgacgaaccctatggaattaatggaagcatggccttgagagatgggcttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatttgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacagatgattggtctgcaagtggtgatgtgtatgttggaggtaccactggcttagccatatgggccgtgaccttggttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcacagtagatgttatccttgtattgtactattttaagttgtattccatgtaatcttttcaaaaatacttcaaaagatttcctggcatcttgattaatatgtaattgctgtgattttactgtggataatattacacctaatgttactgtttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50610" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50310" g_stop="50209" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="162" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="218" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="271" r_length="53" r_score="0.925"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48854" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="510" r_length="239" r_score="0.849"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E575301" ref_strand="-">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E575301" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="50310" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATATCAGTGAAAGGGCTTCCATCAC-TTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTA--TTAAGTT-TA--AGTTGTATTC-CATGTTATCT-TTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTA</genome_strand>
        <mrna_strand>AGAAAACATCAGTGAAAGGGCTTCCATCACTTTGCTAGGTCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTCAAGAAGCTCAAGACCGACGAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGCTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATTTGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACAGATGATTGGTCTGCAAGTGGTGATGTGTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCCGTGACCTTGGTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCACAGTAGATGTTATCCTTGTATTGTACTATTTTAAGTTGTATTCCATGTAATCTTTTCAAAAATACTTCAAAAGATTTCCTGGCATCTTGATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACACCTAATGTTACTGTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E624696" ref_strand="+" ref_description="SGN-E624696 [GI|21490]">
      <seq>atggcaagcacagtaatgagctcattgagcctaaagccaactttcactttggagaaaacatcagtgaaagggcttccatcacttgctaggtcttcttctcccttcaaagttgtggctagtggtgtcaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatgggcttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacagatgagtggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggccgtgaccttggttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcacagtagatgttatccttgtattgtactattttaagttgtattcatgtaatcttttcaaaaatacttcaaaatattttcttggcatcttgattaatatgtaattgctgtgattttactgtggataatattacacctaatgttgctgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50662" stop="48555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50362" g_stop="50209" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="213" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="269" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="322" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48855" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="560" r_length="238" r_score="0.861"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E624696" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E624696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50362" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTA--TTAAGTT-TA-AGTTGTATTC-CATGTTATCT-TTTCAAAATA-TTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTT</genome_strand>
        <mrna_strand>ATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTTTGGAGAAAACATCAGTGAAAGGGCTTCCATCACTTGCTAGGTCTTCTTCTCCCTTCAAAGTTGTGGCTAGTGGTGTCAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGCTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACAGATGAGTGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCCGTGACCTTGGTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCACAGTAGATGTTATCCTTGTATTGTACTATTTTAAGTTGTATTCATGTAATCTTTTCAAAAATACTTCAAAATATTTTCTTGGCATCTTGATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACACCTAATGTTGCTGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295250" ref_strand="+" ref_description="SGN-E295250 [cLET-20-K16]">
      <seq>tggcaagcacagtaatgatctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattctactgtggataatattacatctaatgttgctgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50661" stop="48556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50361" g_stop="50209" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="212" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="268" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="321" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48856" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="551" r_length="230" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E295250" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50361" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTT</genome_strand>
        <mrna_strand>TGGCAAGCACAGTAATGATCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTCTACTGTGGATAATATTACATCTAATGTTGCTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320131" ref_strand="+" ref_description="SGN-E320131 [cTOB-21-B4]">
      <seq>cacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgaatttactgtggataatattacatctaatgttgctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50654" stop="48558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50354" g_stop="50209" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="205" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="261" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="314" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48858" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="542" r_length="228" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E320131" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50354" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGT</genome_strand>
        <mrna_strand>CACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGAATTTACTGTGGATAATATTACATCTAATGTTGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739529" ref_strand="+" ref_description="SGN-E739529 [LC17DC09]">
      <seq>aagaagagaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataaaaaaaaataaaaagttgctgtggggggtcccggaaccaaattccccctttgggggggcgcataaaacccatttccccctata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50688" stop="48558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50388" g_stop="50209" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="239" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="295" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="348" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48860" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="574" r_length="226" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E739529" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50388" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCT</genome_strand>
        <mrna_strand>AAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAAAAAAAAATAAAAAGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281801" ref_strand="+" ref_description="SGN-E281801 [cLER-14-N15]">
      <seq>agaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattntactgtggataatattacatctaatgttgctgttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50667" stop="48557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50367" g_stop="50209" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="218" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="274" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="327" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48860" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="553" r_length="226" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="557" polyA_stop="566"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E281801" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50367" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCT</genome_strand>
        <mrna_strand>AGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTNTACTGTGGATAATATTACATCTAATGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279699" ref_strand="+" ref_description="SGN-E279699 [cLER-5-H7]">
      <seq>agaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50667" stop="48560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50367" g_stop="50209" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="218" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="274" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="327" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48860" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="553" r_length="226" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E279699" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50367" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCT</genome_strand>
        <mrna_strand>AGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340004" ref_strand="+" ref_description="SGN-E340004 [cTOF-3-C2]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50659" stop="48560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48860" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="545" r_length="226" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E340004" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCT</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300542" ref_strand="+" ref_description="SGN-E300542 [cLET-45-I13]">
      <seq>aagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaagaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttacttgggataatattacatctaatggtgcttgtttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50657" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50357" g_stop="50209" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="208" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="264" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="317" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48860" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="543" r_length="226" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="549" polyA_stop="560"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E300542" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50357" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCT</genome_strand>
        <mrna_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAAGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTTGGGATAATATTACATCTAATGGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298936" ref_strand="+" ref_description="SGN-E298936 [cLET-42-A2]">
      <seq>agtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattggactattaagtttaagctgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattctactgtggataatattacatctaatgttgcttgtttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50651" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50351" g_stop="50209" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="311" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48860" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="537" r_length="226" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="543" polyA_stop="555"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E298936" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50351" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCT</genome_strand>
        <mrna_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGGACTATTAAGTTTAAGCTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTCTACTGTGGATAATATTACATCTAATGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295544" ref_strand="+" ref_description="SGN-E295544 [cLET-23-J7]">
      <seq>agctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgcttgtttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50644" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50344" g_stop="50209" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="195" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="251" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="304" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48860" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="530" r_length="226" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="536" polyA_stop="549"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E295544" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50344" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCT</genome_strand>
        <mrna_strand>AGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290297" ref_strand="+" ref_description="SGN-E290297 [cLET-5-L16]">
      <seq>tcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgcgattttactgtggataatattacatctaatgttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50619" stop="48560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50319" g_stop="50209" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="170" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="226" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="279" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48860" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="505" r_length="226" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E290297" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50319" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCT</genome_strand>
        <mrna_strand>TCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGCGATTTTACTGTGGATAATATTACATCTAATGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717328" ref_strand="+" ref_description="SGN-E717328 [FB19DE07]">
      <seq>gttaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50599" stop="48557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50299" g_stop="50209" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="150" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="206" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="259" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48860" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="485" r_length="226" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="489" polyA_stop="502"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E717328" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50299" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCT</genome_strand>
        <mrna_strand>GTTAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292332" ref_strand="+" ref_description="SGN-E292332 [cLET-1-A24]">
      <seq>gcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatacatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50591" stop="48567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50291" g_stop="50209" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="142" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="198" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="251" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48862" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="475" r_length="224" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E292332" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50291" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTG</genome_strand>
        <mrna_strand>GCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATACATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341917" ref_strand="+" ref_description="SGN-E341917 [cTOF-9-M2]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattcccatgttatcttttcaaattatttcttggcatcttcattaatattgaaattgctgtgattttactgtggatattattacattctaatgttggctggtttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50659" stop="48554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48863" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="545" r_length="226" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="555" polyA_stop="564"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E341917" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATT-CCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATA-TGTAATTGCTGTGATTTTACTGTGGATAATATTACA-TCTAATGTT</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCCATGTTATCTTTTCAAATTATTTCTTGGCATCTTCATTAATATTGAAATTGCTGTGATTTTACTGTGGATATTATTACATTCTAATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340209" ref_strand="+" ref_description="SGN-E340209 [cTOF-2-O8]">
      <seq>gctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50643" stop="48572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50343" g_stop="50209" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49575" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="157" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49574" i_stop="49021" i_length="554">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49020" g_stop="48863" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="315" r_length="158" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E340209" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50343" e_stop="50209"/>
          <exon e_start="49596" e_stop="49575"/>
          <exon e_start="49020" e_stop="48863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTT</genome_strand>
        <mrna_strand>GCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341755" ref_strand="+" ref_description="SGN-E341755 [cTOF-9-G13]">
      <seq>gctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50643" stop="48572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50343" g_stop="50209" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49575" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="157" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49574" i_stop="49021" i_length="554">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49020" g_stop="48863" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="315" r_length="158" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E341755" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50343" e_stop="50209"/>
          <exon e_start="49596" e_stop="49575"/>
          <exon e_start="49020" e_stop="48863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTT</genome_strand>
        <mrna_strand>GCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341837" ref_strand="+" ref_description="SGN-E341837 [cTOF-9-H13]">
      <seq>gctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50643" stop="48572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50343" g_stop="50209" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49575" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="157" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49574" i_stop="49021" i_length="554">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49020" g_stop="48863" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="315" r_length="158" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E341837" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50343" e_stop="50209"/>
          <exon e_start="49596" e_stop="49575"/>
          <exon e_start="49020" e_stop="48863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTT</genome_strand>
        <mrna_strand>GCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296255" ref_strand="+" ref_description="SGN-E296255 [cLET-24-H6]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcacgcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgggattttactgtggataatattacatctaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50659" stop="48565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48865" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="540" r_length="221" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E296255" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATG</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCACGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGGGATTTTACTGTGGATAATATTACATCTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292899" ref_strand="+" ref_description="SGN-E292899 [cLET-11-N17]">
      <seq>agtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattntactgtggataatattacatctaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50651" stop="48565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50351" g_stop="50209" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="311" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48865" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="532" r_length="221" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E292899" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50351" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATG</genome_strand>
        <mrna_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTNTACTGTGGATAATATTACATCTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285788" ref_strand="+" ref_description="SGN-E285788 [cLES-5-K18]">
      <seq>taatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50649" stop="48565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50349" g_stop="50209" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="200" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="256" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="309" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48865" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="530" r_length="221" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E285788" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50349" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATG</genome_strand>
        <mrna_strand>TAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271907" ref_strand="+" ref_description="SGN-E271907 [cLEM-8-L20]">
      <seq>gaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaagcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaagaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50681" stop="48566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50381" g_stop="50209" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="232" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="288" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="341" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48866" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="561" r_length="220" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E271907" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50381" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAAT</genome_strand>
        <mrna_strand>GAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAAGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAAGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291033" ref_strand="+" ref_description="SGN-E291033 [cLET-8-A1]">
      <seq>aaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttgattaatatgtaattgctgtgattttactgtggataatattacatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50680" stop="48566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50380" g_stop="50209" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="231" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="287" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="340" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48866" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="560" r_length="220" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E291033" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50380" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAAT</genome_strand>
        <mrna_strand>AAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTGATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735129" ref_strand="+" ref_description="SGN-E735129 [LB14CA12]">
      <seq>gaggggctagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctannaaaaaaaaaaaaaaaaaaaaaaaaaancccccgggggggggccgggaccccatttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50660" stop="48568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50364" g_stop="50209" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="215" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="271" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="324" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48866" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="544" r_length="220" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="552" polyA_stop="571"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E735129" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50364" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAAT</genome_strand>
        <mrna_strand>GAGGGGCTAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTANN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711506" ref_strand="+" ref_description="SGN-E711506 [FB02AG07]">
      <seq>ccggtaagcacagtaatgagctcattgagcctaaagccaacttccactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50660" stop="48572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50362" g_stop="50209" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="213" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="269" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="322" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48866" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="542" r_length="220" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E711506" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50362" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAAT</genome_strand>
        <mrna_strand>CCGGTAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTCCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734990" ref_strand="+" ref_description="SGN-E734990 [LB14AE09]">
      <seq>ggctagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctannaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50660" stop="48568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50360" g_stop="50209" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="211" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="267" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="320" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48866" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="540" r_length="220" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="541" polyA_stop="562"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E734990" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50360" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAAT</genome_strand>
        <mrna_strand>GGCTAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTANN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203027" ref_strand="+" ref_description="SGN-E203027 [cLEB-1-P2]">
      <seq>gcacgagcagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagattaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50659" stop="48566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48866" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="539" r_length="220" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E203027" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAAT</genome_strand>
        <mrna_strand>GCACGAGCAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGATTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292868" ref_strand="+" ref_description="SGN-E292868 [cLET-11-B13]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactggggataatattacatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50659" stop="48566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48866" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="539" r_length="220" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E292868" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAAT</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGGGGATAATATTACATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339026" ref_strand="+" ref_description="SGN-E339026 [cTOF-6-D21]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgnnttgctgttttaggttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50659" stop="48565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48866" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="539" r_length="220" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="558" polyA_stop="577"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E339026" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAAT</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285321" ref_strand="+" ref_description="SGN-E285321 [cLER-20-E14]">
      <seq>aagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattgtactggggataatattacatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50657" stop="48566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50357" g_stop="50209" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="208" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="264" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="317" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48866" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="537" r_length="220" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E285321" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50357" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAAT</genome_strand>
        <mrna_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTGTACTGGGGATAATATTACATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295106" ref_strand="+" ref_description="SGN-E295106 [cLET-20-C2]">
      <seq>agtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50651" stop="48567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50351" g_stop="50209" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="311" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48867" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="530" r_length="219" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E295106" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50351" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAA</genome_strand>
        <mrna_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347441" ref_strand="+" ref_description="SGN-E347441 [cTOF-33-B11]">
      <seq>aagaagagaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50688" stop="48567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50388" g_stop="50209" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="239" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="295" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="348" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48868" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="566" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="567" polyA_stop="576"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E347441" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50388" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>AAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291928" ref_strand="+" ref_description="SGN-E291928 [cLET-7-I15]">
      <seq>aaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaaangnnaaaanaaaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagccccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50680" stop="48568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50380" g_stop="50209" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49781" i_length="428">
            <donor d_prob="0.999" d_score="0.74"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49780" g_stop="49765" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="183" r_length="16" r_score="0.688"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49764" i_stop="49597" i_length="168">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="242" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="298" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="351" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49085" g_stop="48868" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="569" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E291928" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50380" e_stop="50209"/>
          <exon e_start="49780" e_stop="49765"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>AAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAA-ANG-NNAA-A-ANA-AAAGCTTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGACAAACCCTATG........................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................CCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298806" ref_strand="+" ref_description="SGN-E298806 [cLET-44-I16]">
      <seq>aggttataggagaaaatggcatgcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtatatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgagattctactgtggataatattacatctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50677" stop="48567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50377" g_stop="50209" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="228" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="284" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="337" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48868" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="555" r_length="218" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="556" polyA_stop="566"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E298806" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50377" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>AGGTTATAGGAGAAAATGGCATGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTATATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGAGATTCTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286632" ref_strand="+" ref_description="SGN-E286632 [cLES-12-D11]">
      <seq>aggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattntactgtggataatattacatctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50677" stop="48567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50377" g_stop="50209" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="228" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="284" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="337" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48868" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="555" r_length="218" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E286632" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50377" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>AGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTNTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348751" ref_strand="+" ref_description="SGN-E348751 [cTOF-29-K23]">
      <seq>taataggagaaaatgggcaagccacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttacctagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattntactgtggataatattacatctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50674" stop="48567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50374" g_stop="50209" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="228" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="284" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="337" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48868" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="555" r_length="218" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="556" polyA_stop="572"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E348751" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50374" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATAGGAGAAAAT-GGCAAG-CACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTA-CTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>TAATAGGAGAAAATGGGCAAGCCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACCTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTNTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732765" ref_strand="+" ref_description="SGN-E732765 [LB03AC10]">
      <seq>cgcgttaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50657" stop="48567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50363" g_stop="50209" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="214" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="270" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="323" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48868" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="541" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="542" polyA_stop="551"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E732765" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50363" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>CGCGTTAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733372" ref_strand="+" ref_description="SGN-E733372 [LB04CG10]">
      <seq>cggtaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50660" stop="48567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50361" g_stop="50209" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="212" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="268" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="321" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48868" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="539" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="540" polyA_stop="549"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E733372" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50361" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>CGGTAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312823" ref_strand="+" ref_description="SGN-E312823 [cTOA-8-I15]">
      <seq>tggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50661" stop="48567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50361" g_stop="50209" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="212" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="268" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="321" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48868" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="539" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="540" polyA_stop="549"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E312823" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50361" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>TGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732421" ref_strand="+" ref_description="SGN-E732421 [LB02AE06]">
      <seq>ggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50660" stop="48572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50360" g_stop="50209" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="211" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="267" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="320" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48868" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="538" r_length="218" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E732421" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50360" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732479" ref_strand="+" ref_description="SGN-E732479 [LB02BB07]">
      <seq>ggctagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtatttcatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50660" stop="48567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50360" g_stop="50209" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="211" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="267" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="320" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48868" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="538" r_length="218" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="539" polyA_stop="548"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E732479" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50360" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>GGCTAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTTCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295868" ref_strand="+" ref_description="SGN-E295868 [cLET-27-G9]">
      <seq>ggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50660" stop="48567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50360" g_stop="50209" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="211" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="267" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="320" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48868" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="538" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="539" polyA_stop="548"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E295868" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50360" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713329" ref_strand="+" ref_description="SGN-E713329 [FB08BD05]">
      <seq>ggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50660" stop="48567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50360" g_stop="50209" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="211" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="267" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="320" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48868" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="538" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="539" polyA_stop="560"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E713329" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50360" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732628" ref_strand="+" ref_description="SGN-E732628 [LB02CG10]">
      <seq>ggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50660" stop="48567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50360" g_stop="50209" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="211" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="267" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="320" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48868" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="538" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E732628" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50360" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300522" ref_strand="+" ref_description="SGN-E300522 [cLET-45-P4]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattggactattaagtttaagctgcattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattctactgtggataatattacatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50659" stop="48568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48868" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="537" r_length="218" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E300522" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGGACTATTAAGTTTAAGCTGCATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTCTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295841" ref_strand="+" ref_description="SGN-E295841 [cLET-25-L16]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcangcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaagaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50659" stop="48568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48868" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="537" r_length="218" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E295841" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCANGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAAGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293104" ref_strand="+" ref_description="SGN-E293104 [cLET-12-O20]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaaggtgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50659" stop="48568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48868" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="537" r_length="218" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E293104" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGGTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345764" ref_strand="+" ref_description="SGN-E345764 [cTOF-18-I3]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50659" stop="48567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48868" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="537" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="538" polyA_stop="549"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E345764" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346518" ref_strand="+" ref_description="SGN-E346518 [cTOF-28-E17]">
      <seq>caagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50658" stop="48567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50358" g_stop="50209" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="209" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="265" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="318" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48868" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="536" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E346518" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50358" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>CAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288067" ref_strand="+" ref_description="SGN-E288067 [cLES-7-N16]">
      <seq>aagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactggggataatattacctctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50657" stop="48567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50357" g_stop="50209" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="208" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="264" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="317" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48868" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="535" r_length="218" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E288067" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50357" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGGGGATAATATTACCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297502" ref_strand="+" ref_description="SGN-E297502 [cLET-28-K4]">
      <seq>aagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattntactgtggataatattacatctaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50657" stop="48567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50357" g_stop="50209" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="208" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="264" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="317" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48868" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="535" r_length="218" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="536" polyA_stop="548"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E297502" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50357" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTNTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294886" ref_strand="-" ref_description="SGN-E294886 [cLET-17-G9](-)">
      <seq>aagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50657" stop="48568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50357" g_stop="50209" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="208" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="264" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="317" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48868" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="535" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E294886" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294886" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="50357" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294885" ref_strand="+" ref_description="SGN-E294885 [cLET-17-G9]">
      <seq>aagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50657" stop="48568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50357" g_stop="50209" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="208" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="264" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="317" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48868" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="535" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E294885" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50357" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345146" ref_strand="+" ref_description="SGN-E345146 [cTOF-22-F24]">
      <seq>aagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50657" stop="48567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50357" g_stop="50209" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="208" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="264" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="317" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48868" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="535" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="536" polyA_stop="546"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E345146" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50357" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291498" ref_strand="+" ref_description="SGN-E291498 [cLET-6-A11]">
      <seq>gcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattntactgtggataatattacatctaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50655" stop="48567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50355" g_stop="50209" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="206" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="262" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="315" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48868" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="533" r_length="218" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="534" polyA_stop="547"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E291498" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50355" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>GCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTNTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288205" ref_strand="+" ref_description="SGN-E288205 [cLES-7-J4]">
      <seq>cacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50654" stop="48567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50354" g_stop="50209" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="205" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="261" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="314" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48868" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="532" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="533" polyA_stop="543"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E288205" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50354" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>CACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288175" ref_strand="-" ref_description="SGN-E288175 [cLES-7-L19]">
      <seq>cagttgccatttttttaaaaaaccagtaatgagctcattgagcctagagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagaccttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcgagtgaccttgcttggcattcttgcaggaggntgctctccattgtctacaacaacaaagtgctttggcgcacatagatgttatccttgatattgtactcattaagtttagagttgtattccatgcttatcttttcaagaatatttattggcagtcttcatataatatgtaattgctgtgattttactgtggataatattacatctaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50657" stop="48567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50351" g_stop="50209" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="167" r_length="143" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="226" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="282" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="335" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48868" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="566" r_length="231" r_score="0.876"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="567" polyA_stop="585"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E288175" ref_strand="-">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288175" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="50351" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCG-GTGACCTTGCTTGGCATTCTTGCAGGAGG-TGCTCTCC-TTGTCTACAAC-AC-AAGTGCTTTGGCGCA-ATAGATGTTATCCTTG-TATTGTACT-ATTAAGTTTA-AGTTGTATTCCATG-TTATCTTTTCAA-AATATTTCTTGGCA-TCTTCAT-TAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>AGTAATGAGCTCATTGAGCCTAGAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGACCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGAGTGACCTTGCTTGGCATTCTTGCAGGAGGNTGCTCTCCATTGTCTACAACAACAAAGTGCTTTGGCGCACATAGATGTTATCCTTGATATTGTACTCATTAAGTTTAGAGTTGTATTCCATGCTTATCTTTTCAAGAATATTTATTGGCAGTCTTCATATAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287275" ref_strand="-" ref_description="SGN-E287275 [cLES-15-O9]">
      <seq>agtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcccttactagatcttcttctcccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggtttacccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattccatctaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50651" stop="48567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50351" g_stop="50209" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="311" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48868" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="529" r_length="218" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="530" polyA_stop="548"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E287275" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287275" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="50351" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCCCTTACTAGATCTTCTTCTCCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGTTTACCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTCCATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295708" ref_strand="+" ref_description="SGN-E295708 [cLET-25-L4]">
      <seq>agtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50651" stop="48567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50351" g_stop="50209" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="311" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48868" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="529" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="530" polyA_stop="541"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E295708" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50351" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294471" ref_strand="-" ref_description="SGN-E294471 [cLET-14-H14](-)">
      <seq>taatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattctactgtggataatattacatctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50649" stop="48567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50349" g_stop="50209" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="200" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="256" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="309" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48868" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="527" r_length="218" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="528" polyA_stop="539"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E294471" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294471" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="50349" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>TAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTCTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294470" ref_strand="+" ref_description="SGN-E294470 [cLET-14-H14]">
      <seq>taatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattctactgtggataatattacatctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50649" stop="48567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50349" g_stop="50209" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="200" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="256" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="309" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48868" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="527" r_length="218" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="528" polyA_stop="539"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E294470" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50349" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>TAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTCTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734579" ref_strand="+" ref_description="SGN-E734579 [LB13AB09]">
      <seq>aatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50648" stop="48567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50348" g_stop="50209" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="199" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="255" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="308" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48868" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="526" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="527" polyA_stop="536"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E734579" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50348" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>AATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734232" ref_strand="+" ref_description="SGN-E734232 [LB12AE07]">
      <seq>attgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttgtaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50639" stop="48567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50339" g_stop="50209" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="190" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="246" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="299" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48868" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="517" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="518" polyA_stop="538"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E734232" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50339" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>ATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGTAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732208" ref_strand="+" ref_description="SGN-E732208 [LB01CC05]">
      <seq>ctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50632" stop="48567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50332" g_stop="50209" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="183" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="239" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="292" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48868" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="510" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="511" polyA_stop="537"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E732208" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50332" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>CTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283743" ref_strand="+" ref_description="SGN-E283743 [cLES-1-I7](-)">
      <seq>agaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatgcccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50610" stop="48567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50310" g_stop="50209" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="161" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="217" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="270" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48868" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="488" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="489" polyA_stop="502"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E283743" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50310" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>AGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGCCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285157" ref_strand="+" ref_description="SGN-E285157 [cLER-20-I24]">
      <seq>atatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50605" stop="48567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50305" g_stop="50209" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="156" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="212" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="265" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48868" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="483" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E285157" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50305" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>ATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373576" ref_strand="+" ref_description="SGN-E373576 [TUS-33-A20](-)">
      <seq>ggcttccatcacttactagatctttttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgaaagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtttatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtttacaacacaagtgctttggcgcaataaatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatttaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50592" stop="48567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50292" g_stop="50209" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="143" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="199" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="252" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48868" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="470" r_length="218" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="471" polyA_stop="497"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E373576" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50292" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>GGCTTCCATCACTTACTAGATCTTTTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAAAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTTTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTTTACAACACAAGTGCTTTGGCGCAATAAATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373577" ref_strand="+" ref_description="SGN-E373577 [TUS-33-A20]">
      <seq>gcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaacaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50591" stop="48567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50291" g_stop="50209" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="142" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="198" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="251" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48868" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="469" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="470" polyA_stop="497"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E373577" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50291" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>GCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E215458" ref_strand="+" ref_description="SGN-E215458 [cLEL-20-A17](-)">
      <seq>atcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50585" stop="48567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50285" g_stop="50209" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="136" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="192" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="245" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48868" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="463" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="464" polyA_stop="479"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E215458" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50285" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>ATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716250" ref_strand="+" ref_description="SGN-E716250 [FB16CB04]">
      <seq>atcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50585" stop="48567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50285" g_stop="50209" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="136" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="192" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="245" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48868" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="463" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="464" polyA_stop="476"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E716250" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50285" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>ATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E215170" ref_strand="+" ref_description="SGN-E215170 [cLEL-20-A17](-)">
      <seq>agttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50555" stop="48567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50255" g_stop="50209" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="106" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="162" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="215" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48868" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="433" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="434" polyA_stop="449"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E215170" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50255" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>AGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299486" ref_strand="+" ref_description="SGN-E299486 [cLET-43-J14]">
      <seq>taagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagctgcattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50537" stop="48567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50237" g_stop="50209" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="88" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="144" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="197" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48868" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="415" r_length="218" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="416" polyA_stop="431"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E299486" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50237" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>TAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGCTGCATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226418" ref_strand="+" ref_description="SGN-E226418 [cLEL-26-L2](-)">
      <seq>agcatggccttgaaaaatggggtttaatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttgaaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaataaatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="49885" stop="48567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49585" g_stop="49538" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.896"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="105" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="158" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49085" g_stop="48868" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="376" r_length="218" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="377" polyA_stop="400"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E226418" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49585" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATGGCCTTGAGAGATGGGG-TTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>AGCATGGCCTTGAAAAATGGGGTTTAATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGAAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAAATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E222892" ref_strand="+" ref_description="SGN-E222892 [cLEL-38-I4](-)">
      <seq>cccaagggaaagggtgtgtgccaatatgttgacaaatatggagctaatgttgatgcatacagtcccatctgcgacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactgcattacccatatggccggtcaccctgcttggcattcttgcagaaggtgctctccatgtctacaacgcaagtgctttggcgcaataaatgttatccttgtattgtacaattaagtttaagctgtatgccatgttatcttttcgagatatttcttggcatcttcattaatatgtaataactgtgatttatctgtggatggttttacaactaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="49683" stop="48567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49543" g_stop="49538" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="62" r_length="56" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="115" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49085" g_stop="48868" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="333" r_length="218" r_score="0.894"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="334" polyA_stop="349"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E222892" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49543" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>CCCAAG............................................................................................................................................................GGAAAGGGTGTGTGCCAATATGTTGACAAATATGGAGCTAATGTTGATGCATACAG............................................................................TCCCATCTGCGACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGCATTACCCATATGGCCGGTCACCCTGCTTGGCATTCTTGCAGAAGGTGCTCTCCATGTCTACAACGCAAGTGCTTTGGCGCAATAAATGTTATCCTTGTATTGTACAATTAAGTTTAAGCTGTATGCCATGTTATCTTTTCGAGATATTTCTTGGCATCTTCATTAATATGTAATAACTGTGATTTATCTGTGGATGGTTTTACAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236712" ref_strand="+" ref_description="SGN-E236712 [cLEL-7-H8](-)">
      <seq>ccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="49683" stop="48567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49542" g_stop="49538" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="61" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="114" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49085" g_stop="48868" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="332" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="333" polyA_stop="348"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E236712" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49542" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>CCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E232387" ref_strand="+" ref_description="SGN-E232387 [cLEL-5-K1](-)">
      <seq>gggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattncttctaaaaaaacaaaaaaaaaaaacaaaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="49676" stop="48567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49376" g_stop="49326" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="104" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49085" g_stop="48868" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="322" r_length="218" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="323" polyA_stop="341"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E232387" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49376" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>GGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTNCTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E232463" ref_strand="+" ref_description="SGN-E232463 [cLEL-5-K1](-)">
      <seq>ggtctccaagtggtaatgtctatgttggaggtacccctggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggaatcttcattaatatgtaaaagctgaacttttcctgtggataattttccatctaaaaaaaaaaaaaaaaaaaacaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="49526" stop="48597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49226" g_stop="49197" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49085" g_stop="48868" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="248" r_length="218" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="249" polyA_stop="273"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E232463" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>248</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49226" e_stop="49197"/>
          <exon e_start="49085" e_stop="48868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>GGTCTCCAAGTGGTAATGTCTATGTTGGAG...............................................................................................................GTACCCCTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGAATCTTCATTAATATGTAAAAGCTGAACTTTTCCTGTGGATAATTTTCCATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289638" ref_strand="+" ref_description="SGN-E289638 [cLET-4-L23]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccacttgcttagccatatggccggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50659" stop="48569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48869" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="536" r_length="217" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E289638" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCT</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTTGCTTAGCCATATGGCCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725966" ref_strand="+" ref_description="SGN-E725966 [LA08DE08]">
      <seq>cagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttangttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50652" stop="48569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50352" g_stop="50209" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="203" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="259" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="312" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48869" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="529" r_length="217" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E725966" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50352" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCT</genome_strand>
        <mrna_strand>CAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTANGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298523" ref_strand="+" ref_description="SGN-E298523 [cLET-41-O8]">
      <seq>taaagccatctttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttacccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50631" stop="48572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50331" g_stop="50209" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="182" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="238" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="291" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48869" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="508" r_length="217" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E298523" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50331" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCT</genome_strand>
        <mrna_strand>TAAAGCCATCTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTACCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342555" ref_strand="+" ref_description="SGN-E342555 [cTOF-7-E3]">
      <seq>aagaagagaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattntactgtggataatattacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50688" stop="48570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50388" g_stop="50209" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="239" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="295" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="348" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48870" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="564" r_length="216" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E342555" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50388" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATC</genome_strand>
        <mrna_strand>AAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTNTACTGTGGATAATATTACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540539" ref_strand="+" ref_description="SGN-E540539 [TUS-60-N21]">
      <seq>gagaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50683" stop="48572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50383" g_stop="50209" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="234" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="290" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="343" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48870" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="559" r_length="216" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E540539" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50383" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATC</genome_strand>
        <mrna_strand>GAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548401" ref_strand="+" ref_description="SGN-E548401 [TUS-60-N21](-)">
      <seq>gagaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50683" stop="48572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50383" g_stop="50209" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="234" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="290" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="343" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48870" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="559" r_length="216" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E548401" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50383" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATC</genome_strand>
        <mrna_strand>GAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAAAAAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266044" ref_strand="+" ref_description="SGN-E266044 [cLEI-6-C13]">
      <seq>aaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactggggataatattacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50680" stop="48570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50380" g_stop="50209" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="231" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="287" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="340" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48870" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="556" r_length="216" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E266044" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50380" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATC</genome_strand>
        <mrna_strand>AAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGGGGATAATATTACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740887" ref_strand="+" ref_description="SGN-E740887 [LC23BC06]">
      <seq>cgtgtaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50659" stop="48572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50362" g_stop="50209" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="213" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="269" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="322" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48870" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="538" r_length="216" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E740887" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50362" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATC</genome_strand>
        <mrna_strand>CGTGTAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736823" ref_strand="+" ref_description="SGN-E736823 [LC07BG05]">
      <seq>ggtaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50660" stop="48572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50360" g_stop="50209" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="211" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="267" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="320" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48870" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="536" r_length="216" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E736823" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50360" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATC</genome_strand>
        <mrna_strand>GGTAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740604" ref_strand="+" ref_description="SGN-E740604 [LC22AF08]">
      <seq>ggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50660" stop="48572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50360" g_stop="50209" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="211" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="267" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="320" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48870" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="536" r_length="216" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E740604" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50360" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATC</genome_strand>
        <mrna_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342531" ref_strand="+" ref_description="SGN-E342531 [cTOF-8-J12]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggngaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactatttagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaatggctgtgattttactgtggataatattacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50659" stop="48570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48870" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="535" r_length="216" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E342531" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATC</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGNGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTTAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATGGCTGTGATTTTACTGTGGATAATATTACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290789" ref_strand="+" ref_description="SGN-E290789 [cLET-10-I13]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50659" stop="48570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48870" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="535" r_length="216" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E290789" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATC</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308856" ref_strand="+" ref_description="SGN-E308856 [cLEY-23-K13]">
      <seq>cagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50652" stop="48572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50352" g_stop="50209" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="203" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="259" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="312" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48870" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="528" r_length="216" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E308856" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50352" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATC</genome_strand>
        <mrna_strand>CAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283766" ref_strand="+" ref_description="SGN-E283766 [cLES-1-M3]">
      <seq>ttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50553" stop="48572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50253" g_stop="50209" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="104" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="160" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="213" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48870" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="429" r_length="216" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E283766" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50253" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATC</genome_strand>
        <mrna_strand>TTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345560" ref_strand="+" ref_description="SGN-E345560 [cTOF-18-F4]">
      <seq>gaagagaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50686" stop="48572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50386" g_stop="50209" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="237" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="293" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="346" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48871" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="561" r_length="215" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E345560" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50386" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACAT</genome_strand>
        <mrna_strand>GAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299356" ref_strand="+" ref_description="SGN-E299356 [cLET-43-C15]">
      <seq>aagagaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtgcaaaaaaaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50685" stop="48571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50385" g_stop="50209" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="236" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="292" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="345" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48871" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="560" r_length="215" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E299356" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50385" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACAT</genome_strand>
        <mrna_strand>AAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGCAAAAAAAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309301" ref_strand="+" ref_description="SGN-E309301 [cLEY-22-B6]">
      <seq>aaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50679" stop="48572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50379" g_stop="50209" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="230" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="286" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="339" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48871" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="554" r_length="215" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E309301" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50379" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACAT</genome_strand>
        <mrna_strand>AAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732113" ref_strand="+" ref_description="SGN-E732113 [LB01BC05]">
      <seq>ggctagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50660" stop="48572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50360" g_stop="50209" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="211" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="267" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="320" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48871" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="535" r_length="215" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E732113" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50360" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACAT</genome_strand>
        <mrna_strand>GGCTAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291610" ref_strand="+" ref_description="SGN-E291610 [cLET-6-B16]">
      <seq>cacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgaccaatatggagctaatgctgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaagaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgggattttacttgggataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50654" stop="48572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50354" g_stop="50209" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="205" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="261" r_length="56" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="314" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48871" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="529" r_length="215" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E291610" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50354" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACAT</genome_strand>
        <mrna_strand>CACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACCAATATGGAGCTAATGCTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAAGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGGGATTTTACTTGGGATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283767" ref_strand="+" ref_description="SGN-E283767 [cLES-1-M3](-)">
      <seq>gtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50551" stop="48572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50251" g_stop="50209" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="102" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="158" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="211" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48872" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="425" r_length="214" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E283767" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50251" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACA</genome_strand>
        <mrna_strand>GTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343489" ref_strand="+" ref_description="SGN-E343489 [cTOF-19-K3]">
      <seq>agaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatncttcattaatatgtaattgctgtgattntactgtggataatattacantctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50667" stop="48567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50367" g_stop="50209" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="218" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="274" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="327" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48873" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="541" r_length="214" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="547" polyA_stop="559"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E343489" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50367" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCAT-CTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTAC</genome_strand>
        <mrna_strand>AGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATNCTTCATTAATATGTAATTGCTGTGATTNTACTGTGGATAATATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281789" ref_strand="-" ref_description="SGN-E281789 [cLER-14-J11]">
      <seq>agtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50651" stop="48574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50351" g_stop="50209" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="311" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48874" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="523" r_length="212" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E281789" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281789" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="50351" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTA</genome_strand>
        <mrna_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278112" ref_strand="-" ref_description="SGN-E278112 [cLER-4-D17]">
      <seq>gctaagtggtgttaagaagcttaagactgccaaaccctatggaattaatgaaagcatggccttaaaaaatggggttgatgcctcaggcaggaagcccaaggaaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtcatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50548" stop="48574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50248" g_stop="50209" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.93"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="100" r_length="59" r_score="0.932"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="156" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="209" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48874" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="421" r_length="212" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E278112" ref_strand="-">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278112" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="50248" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCT-AGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTA</genome_strand>
        <mrna_strand>GCTAAGTGGTGTTAAGAAGCTTAAGACTGCCAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGAAAGCATGGCCTTAAAAAATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GAAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTCATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290833" ref_strand="+" ref_description="SGN-E290833 [cLET-10-I20]">
      <seq>tctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50615" stop="48577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50315" g_stop="50209" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="166" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="222" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="275" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48875" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="486" r_length="211" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E290833" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50315" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATT</genome_strand>
        <mrna_strand>TCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290282" ref_strand="+" ref_description="SGN-E290282 [cLET-5-F10]">
      <seq>caagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50658" stop="48576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50358" g_stop="50209" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="209" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="265" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="318" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48876" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="528" r_length="210" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E290282" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50358" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATAT</genome_strand>
        <mrna_strand>CAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732584" ref_strand="+" ref_description="SGN-E732584 [LB02CD01]">
      <seq>cgataaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataaaaaaaaaaacccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50681" stop="48572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50384" g_stop="50209" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="234" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="290" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="343" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48880" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="549" r_length="206" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="550" polyA_stop="560"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E732584" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50384" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATA</genome_strand>
        <mrna_strand>CGAT-AAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292082" ref_strand="+" ref_description="SGN-E292082 [cLET-1-E17]">
      <seq>tggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggntnaaanaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50661" stop="48572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50361" g_stop="50209" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="212" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="268" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="321" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48880" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="527" r_length="206" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="528" polyA_stop="551"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E292082" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50361" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATA</genome_strand>
        <mrna_strand>TGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGNTN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733882" ref_strand="+" ref_description="SGN-E733882 [LB11AG11]">
      <seq>caatcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50658" stop="48572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50358" g_stop="50209" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="209" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="265" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="318" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48880" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="524" r_length="206" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="525" polyA_stop="542"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E733882" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50358" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATA</genome_strand>
        <mrna_strand>CAATCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733973" ref_strand="+" ref_description="SGN-E733973 [LB11BG08]">
      <seq>caagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50658" stop="48572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50358" g_stop="50209" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="209" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="265" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="318" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48880" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="524" r_length="206" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="525" polyA_stop="542"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E733973" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50358" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATA</genome_strand>
        <mrna_strand>CAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292286" ref_strand="+" ref_description="SGN-E292286 [cLET-1-E17](-)">
      <seq>agaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttggcaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtacccctggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50610" stop="48572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50310" g_stop="50209" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="161" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="217" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="270" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48880" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="476" r_length="206" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="477" polyA_stop="499"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E292286" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50310" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATA</genome_strand>
        <mrna_strand>AGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGGCAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCCCTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E232651" ref_strand="+" ref_description="SGN-E232651 [cLEL-5-E23](-)">
      <seq>aagggtgtgtcccaatatgttacaaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaaagtggtgatgtctatgttgaaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcagaaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataaaaaaaacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="49678" stop="48572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49378" g_stop="49326" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="107" r_length="54" r_score="0.943"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49085" g_stop="48880" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="313" r_length="206" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="314" polyA_stop="332"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E232651" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>312</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49378" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCC-AAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATA</genome_strand>
        <mrna_strand>AAGGGTGTGTCCCAATATGTTACAAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAAGTGGTGATGTCTATGTTGAAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGAAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299193" ref_strand="+" ref_description="SGN-E299193 [cLET-42-P6]">
      <seq>taatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagctgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattctactgtggnaaaaaaaaaattccttggcatcttcattaatatttaattgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50649" stop="48557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50349" g_stop="50209" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="200" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="256" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="309" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48883" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="512" r_length="203" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="514" polyA_stop="524"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E299193" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50349" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGG</genome_strand>
        <mrna_strand>TAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGCTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTCTACTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290658" ref_strand="+" ref_description="SGN-E290658 [cLET-10-E21]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagcggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaagaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattggactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactaaatattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50659" stop="48587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48887" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="518" r_length="199" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E290658" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACT</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGCGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAAGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGGACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320712" ref_strand="+" ref_description="SGN-E320712 [cTOB-27-N13]">
      <seq>caagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50658" stop="48587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50358" g_stop="50209" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="209" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="265" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="318" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48887" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="517" r_length="199" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E320712" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50358" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACT</genome_strand>
        <mrna_strand>CAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293688" ref_strand="+" ref_description="SGN-E293688 [cLET-21-B6]">
      <seq>cacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50654" stop="48587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50354" g_stop="50209" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="205" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="261" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="314" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48887" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="513" r_length="199" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E293688" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50354" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACT</genome_strand>
        <mrna_strand>CACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285477" ref_strand="-" ref_description="SGN-E285477 [cLES-10-H23]">
      <seq>tctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcagtaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttgcaggtaccactggcttagccatatgggcggtgaccttgcttggcattcccgcagcaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50615" stop="48587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50315" g_stop="50209" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="166" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="222" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="275" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48887" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="474" r_length="199" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E285477" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285477" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="50315" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACT</genome_strand>
        <mrna_strand>TCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGTAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGCAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCCCGCAGCAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294069" ref_strand="-" ref_description="SGN-E294069 [cLET-13-M1]">
      <seq>ggaaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatgtacaacaagtatgaatggtctccaagtggtgatgtctatgttggaggtaccgctggcttagccatatggccggtgactctgcttggcattcttgcagaaggtgctctccttgtgtacaacacaagtgctttggcgcaatagatgttatctttgtattgtactattaagtttaagttgtataccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaaatgctgtgatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="49682" stop="48590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49382" g_stop="49326" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="110" r_length="53" r_score="0.943"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49085" g_stop="48890" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="306" r_length="196" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E294069" ref_strand="-">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294069" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="49382" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTT</genome_strand>
        <mrna_strand>GGAAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATGTACAACAAGTATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCGCTGGCTTAGCCATATGGCCGGTGACTCTGCTTGGCATTCTTGCAGAAGGTGCTCTCCTTGTGTACAACACAAGTGCTTTGGCGCAATAGATGTTATCTTTGTATTGTACTATTAAGTTTAAGTTGTATACCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAAATGCTGTGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283133" ref_strand="+" ref_description="SGN-E283133 [cLER-17-O9]">
      <seq>gccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgnnnaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50627" stop="48597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50327" g_stop="50209" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="178" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="234" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="287" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48898" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="475" r_length="188" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E283133" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50327" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCT</genome_strand>
        <mrna_strand>GCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297264" ref_strand="+" ref_description="SGN-E297264 [cLET-29-C24]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50659" stop="48608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48900" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="505" r_length="186" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E297264" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTG</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299198" ref_strand="+" ref_description="SGN-E299198 [cLET-43-A1]">
      <seq>aaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagctgtattccatgttatcttttcaaaatatttcttggcatcttcattatnaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50680" stop="48611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50380" g_stop="50209" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="231" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="287" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="340" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48901" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="525" r_length="185" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E299198" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50380" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATT</genome_strand>
        <mrna_strand>AAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGCTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTATNAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292547" ref_strand="+" ref_description="SGN-E292547 [cLET-16-E22]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50659" stop="48608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48901" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="504" r_length="185" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E292547" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATT</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297306" ref_strand="+" ref_description="SGN-E297306 [cLET-29-B14]">
      <seq>tgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttgcatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50637" stop="48601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50337" g_stop="50209" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="188" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="244" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="297" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48901" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="482" r_length="185" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E297306" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50337" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATT</genome_strand>
        <mrna_strand>TGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTGCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293707" ref_strand="+" ref_description="SGN-E293707 [cLET-21-H8]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50659" stop="48603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48903" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="502" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E293707" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAA</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299229" ref_strand="+" ref_description="SGN-E299229 [cLET-43-M5]">
      <seq>agtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50651" stop="48608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50351" g_stop="50209" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="311" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48903" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="494" r_length="183" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E299229" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50351" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAA</genome_strand>
        <mrna_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733583" ref_strand="+" ref_description="SGN-E733583 [LB10BF05]">
      <seq>gaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50681" stop="48603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50381" g_stop="50209" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="232" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="288" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="341" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48904" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="523" r_length="182" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="524" polyA_stop="537"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E733583" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50381" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTA</genome_strand>
        <mrna_strand>GAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735048" ref_strand="+" ref_description="SGN-E735048 [LB14BB09]">
      <seq>ggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50660" stop="48608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50360" g_stop="50209" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="211" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="267" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="320" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48904" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="502" r_length="182" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E735048" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50360" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTA</genome_strand>
        <mrna_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391393" ref_strand="+" ref_description="SGN-E391393 [TUS-48-H9]">
      <seq>caagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaaacttaacactgacaaaccctatggaattaatggaagcatggccttgaaagatggggatgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagaggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctcctagtctacgacacaagtgctttggagcaatagatgttatccttggattgtactattaagattaagttgtattccatgttatctttgaaaaatattacttggcatcttcattaatatgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50658" stop="48603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50358" g_stop="50209" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="209" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="265" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="318" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48904" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="500" r_length="182" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E391393" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50358" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTA</genome_strand>
        <mrna_strand>CAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAACTTAACACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAAAGATGGGGATGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGAGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTAGTCTACGACACAAGTGCTTTGGAGCAATAGATGTTATCCTTGGATTGTACTATTAAGATTAAGTTGTATTCCATGTTATCTTTGAAAAATATTACTTGGCATCTTCATTAATATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733412" ref_strand="+" ref_description="SGN-E733412 [LB04DF04]">
      <seq>caatcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50658" stop="48603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50358" g_stop="50209" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="209" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="265" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="318" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48904" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="500" r_length="182" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="501" polyA_stop="510"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E733412" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50358" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTA</genome_strand>
        <mrna_strand>CAATCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390935" ref_strand="+" ref_description="SGN-E390935 [TUS-46-H10](-)">
      <seq>caagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50658" stop="48603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50358" g_stop="50209" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="209" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="265" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="318" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48904" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="500" r_length="182" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E390935" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50358" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTA</genome_strand>
        <mrna_strand>CAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292602" ref_strand="+" ref_description="SGN-E292602 [cLET-16-N10]">
      <seq>aagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50657" stop="48608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50357" g_stop="50209" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="208" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="264" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="317" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48904" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="499" r_length="182" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E292602" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50357" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTA</genome_strand>
        <mrna_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300412" ref_strand="+" ref_description="SGN-E300412 [cLET-45-A12]">
      <seq>aagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattggactattaagtgtaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50657" stop="48603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50357" g_stop="50209" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="208" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="264" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="317" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48904" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="499" r_length="182" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E300412" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50357" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTA</genome_strand>
        <mrna_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGGACTATTAAGTGTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291981" ref_strand="+" ref_description="SGN-E291981 [cLET-7-M24]">
      <seq>agctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgtcgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccgtgcttggcattcttgcaggaggcgctctccttgtctacaacacaagtgctgtggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaaaaaaaaaaaaaacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50644" stop="48603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50344" g_stop="50209" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="195" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="251" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="304" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48904" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="486" r_length="182" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="487" polyA_stop="503"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E291981" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50344" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTA</genome_strand>
        <mrna_strand>AGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTCGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCGTGCTTGGCATTCTTGCAGGAGGCGCTCTCCTTGTCTACAACACAAGTGCTGTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396183" ref_strand="+" ref_description="SGN-E396183 [TUS-41-G9]">
      <seq>agtgaaaaggtttccatcacttacaaaatcttcttcttccttcaaaattgtggctagtggtgttaaaaaccttaagactgacaaaccctatggaattaatggaacgcatggccttgaaagatggggttgatgcctcaggcacgaagcccaagggaaagggtgtgtaccaatatgtagacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggagaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcctggcatcttcattaatatgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50600" stop="48603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50300" g_stop="50209" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="152" r_length="60" r_score="0.932"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="208" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="261" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48904" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="443" r_length="182" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E396183" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50300" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAA-GCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTA</genome_strand>
        <mrna_strand>AGTGAAAAGGTTTCCATCACTTACAAAATCTTCTTCTTCCTTCAAAATTGTGGCTAGTGGTGTTAAAAACCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAACGCATGGCCTTGAAAGATGGGGTTGATGCCTCAGGCACGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTAGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGAGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCCTGGCATCTTCATTAATATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294164" ref_strand="+" ref_description="SGN-E294164 [cLET-13-D22]">
      <seq>agaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaaagtgtattccatgttatcttttcaaaatatttcttggcatctttattaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50682" stop="48606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50382" g_stop="50209" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="233" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="289" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="342" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48906" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="522" r_length="180" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E294164" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50382" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATG</genome_strand>
        <mrna_strand>AGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAAGTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTTATTAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282058" ref_strand="+" ref_description="SGN-E282058 [cLES-2-F12]">
      <seq>gagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50645" stop="48606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50345" g_stop="50209" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="196" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="252" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="305" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48906" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="485" r_length="180" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E282058" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50345" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATG</genome_strand>
        <mrna_strand>GAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290234" ref_strand="+" ref_description="SGN-E290234 [cLET-5-M8]">
      <seq>agagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="49873" stop="48606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49573" g_stop="49538" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="92" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="145" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49085" g_stop="48906" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="325" r_length="180" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E290234" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49573" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATG</genome_strand>
        <mrna_strand>AGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286405" ref_strand="+" ref_description="SGN-E286405 [cLES-11-B18]">
      <seq>agaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50667" stop="48607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50367" g_stop="50209" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="218" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="274" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="327" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48907" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="506" r_length="179" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E286405" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50367" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATAT</genome_strand>
        <mrna_strand>AGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289637" ref_strand="+" ref_description="SGN-E289637 [cLET-4-L21]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50659" stop="48607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48907" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="498" r_length="179" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E289637" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATAT</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289971" ref_strand="+" ref_description="SGN-E289971 [cLET-9-F10]">
      <seq>cacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50654" stop="48607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50354" g_stop="50209" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="205" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="261" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="314" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48907" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="493" r_length="179" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E289971" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50354" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATAT</genome_strand>
        <mrna_strand>CACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289443" ref_strand="+" ref_description="SGN-E289443 [cLET-3-P13]">
      <seq>agtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaagcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50651" stop="48607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50351" g_stop="50209" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="311" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48907" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="490" r_length="179" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E289443" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50351" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATAT</genome_strand>
        <mrna_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAAGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281176" ref_strand="+" ref_description="SGN-E281176 [cLER-7-J10]">
      <seq>agtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50651" stop="48607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50351" g_stop="50209" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="311" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48907" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="490" r_length="179" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E281176" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50351" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATAT</genome_strand>
        <mrna_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279888" ref_strand="+" ref_description="SGN-E279888 [cLER-8-I21]">
      <seq>ctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50642" stop="48607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50342" g_stop="50209" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="193" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="249" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="302" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48907" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="481" r_length="179" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E279888" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50342" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATAT</genome_strand>
        <mrna_strand>CTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299064" ref_strand="+" ref_description="SGN-E299064 [cLET-42-G9]">
      <seq>ctgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgcattccatgttatcttttcaaaatatttcttggcatcttcattaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50523" stop="48607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50223" g_stop="50209" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="74" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="130" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="183" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48907" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="362" r_length="179" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E299064" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50223" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATAT</genome_strand>
        <mrna_strand>CTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGCATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733303" ref_strand="+" ref_description="SGN-E733303 [LB04CA11]">
      <seq>ccgttcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcnttanaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50643" stop="48608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50345" g_stop="50209" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="196" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="252" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="305" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48911" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="480" r_length="175" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="482" polyA_stop="503"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E733303" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50345" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTA</genome_strand>
        <mrna_strand>CCGTTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCNTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E615833" ref_strand="+" ref_description="SGN-E615833 [65636]">
      <seq>aaaaggtataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactttggagaaaacatcagtgaaagggcttccatcacttgctaggtcttcttctcccttcaaagttgtggctagtggtgtcaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatgggcttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacagatgagtggtctccaagtggtgatgtctatgttggaggtaccacgggcttagccatatgggccgtgaccttggttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcacagtagatgttatccttgtattgtactattttcaagttgtattccatgtaatcttttcaaaaatacttcaaaatatttcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50680" stop="48626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50380" g_stop="50209" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="230" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="286" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="339" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48914" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="509" r_length="170" r_score="0.884"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E615833" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E615833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50380" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTC-AAAATATTTCTTGGCATCTTCA</genome_strand>
        <mrna_strand>AAAAGGT-ATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTTTGGAGAAAACATCAGTGAAAGGGCTTCCATCACTTGCTAGGTCTTCTTCTCCCTTCAAAGTTGTGGCTAGTGGTGTCAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGCTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACAGATGAGTGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACGGGCTTAGCCATATGGGCCGTGACCTTGGTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCACAGTAGATGTTATCCTTGTATTGTACTATT---TTCAAGTTGTATTCCATGTAATCTTTTCAAAAATACTTCAAAATATTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291878" ref_strand="+" ref_description="SGN-E291878 [cLET-7-P17]">
      <seq>tggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcatgcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctaccacacggattaatggtctccaagtggtgatgtctatgttggaggtaccactggcttaaccatatgggcggtgaccttgcttggccttcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgcattggactattaagtttaagctgtatttcatgttatctttttaaaatatttcttggcatcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50661" stop="48615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50361" g_stop="50209" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="212" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="268" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="321" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48915" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="492" r_length="171" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E291878" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50361" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTC</genome_strand>
        <mrna_strand>TGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCATGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACCACACGGATTAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAACCATATGGGCGGTGACCTTGCTTGGCCTTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGCATTGGACTATTAAGTTTAAGCTGTATTTCATGTTATCTTTTTAAAATATTTCTTGGCATCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291462" ref_strand="+" ref_description="SGN-E291462 [cLET-2-D9]">
      <seq>aaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50680" stop="48616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50380" g_stop="50209" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="231" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="287" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="340" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48916" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="510" r_length="170" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E291462" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50380" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTT</genome_strand>
        <mrna_strand>AAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291496" ref_strand="+" ref_description="SGN-E291496 [cLET-2-N18]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagctgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgctggaggtaccactggcttagccatatgggcggcgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50659" stop="48616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48916" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="489" r_length="170" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E291496" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTT</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGCTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGCTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGCGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E471219" ref_strand="+" ref_description="SGN-E471219 [cSTB-23-O17]">
      <seq>ccaactttcactttggagaaaacatcagtgaaagggcttccatcacttgctagatcttcttcttccttcaaagttgtggctagtggtgtcaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatgggcttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacagatgagtggtctccaagtggtgatgtctatgttggaggtaccactggattagccatatgggccgtgaccttggttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcacagtagatgttatccttgtattgtactattttaagttgtattccatgtaatcttttcaaaaatacttcaaaatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50626" stop="48626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50326" g_stop="50209" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="177" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="233" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="286" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48916" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="451" r_length="165" r_score="0.888"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E471219" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E471219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50326" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTT</genome_strand>
        <mrna_strand>CCAACTTTCACTTTGGAGAAAACATCAGTGAAAGGGCTTCCATCACTTGCTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTCAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGCTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACAGATGAGTGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGATTAGCCATATGGGCCGTGACCTTGGTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCACAGTAGATGTTATCCTTGTATTGTACTA-T---TTTAAGTTGTATTCCATGTAATCTTTTCAAAA-ATACTTCAAAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468471" ref_strand="+" ref_description="SGN-E468471 [cSTB-4-J24]">
      <seq>agaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactttggagaaaacatcagtgaaagggcttccatcacttgctagatcttcttcttccttcaaagttgtggctagtggtgtcaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatgggcttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacagatgagtggtctccaagtggtgatgtctatgttggaggtaccactggattagccatatgggccgtgaccttggttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcacagtagatgttatccttgtattgtactattttaagttgtattccatgtaatcttttcaaaaatacttcaaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50667" stop="48626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50367" g_stop="50209" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="218" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="274" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="327" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48920" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="490" r_length="163" r_score="0.892"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E468471" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E468471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50367" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTC-AAAATATTTCTTGGCA</genome_strand>
        <mrna_strand>AGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTTTGGAGAAAACATCAGTGAAAGGGCTTCCATCACTTGCTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTCAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGCTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACAGATGAGTGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGATTAGCCATATGGGCCGTGACCTTGGTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCACAGTAGATGTTATCCTTGTATTGTACTA-T---TTTAAGTTGTATTCCATGTAATCTTTTCAAAAATACTTCAAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284536" ref_strand="-" ref_description="SGN-E284536 [cLES-3-B21]">
      <seq>aaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgttccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50607" stop="48621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50307" g_stop="50209" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="158" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="214" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="267" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48921" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="432" r_length="165" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E284536" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284536" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="50307" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGC</genome_strand>
        <mrna_strand>AAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTTCCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278078" ref_strand="+" ref_description="SGN-E278078 [cLER-4-A12]">
      <seq>agaaaatggcaagcacagctatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagcggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgctggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaagaagtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50667" stop="48623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50367" g_stop="50209" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="218" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="274" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="327" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48923" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="490" r_length="163" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E278078" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50367" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTG</genome_strand>
        <mrna_strand>AGAAAATGGCAAGCACAGCTATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGCGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGCTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAAGAAGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296925" ref_strand="+" ref_description="SGN-E296925 [cLET-26-M14]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaagcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatctttttcaaatatttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50659" stop="48624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48924" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="481" r_length="162" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E296925" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTT</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAAGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTTCAAATATTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283850" ref_strand="+" ref_description="SGN-E283850 [cLER-13-C15]">
      <seq>gagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50668" stop="48625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50368" g_stop="50209" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="219" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="275" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="328" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48925" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="489" r_length="161" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E283850" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50368" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCT</genome_strand>
        <mrna_strand>GAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297985" ref_strand="+" ref_description="SGN-E297985 [cLET-38-F14]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50659" stop="48625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48925" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="480" r_length="161" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E297985" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCT</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284778" ref_strand="+" ref_description="SGN-E284778 [cLES-3-N11]">
      <seq>agtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaataaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50651" stop="48630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50351" g_stop="50209" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="311" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48926" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="471" r_length="160" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E284778" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50351" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTC</genome_strand>
        <mrna_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294445" ref_strand="-" ref_description="SGN-E294445 [cLET-14-B14](-)">
      <seq>gcaagcacagtaatgagctcgtggagcctaaagccaactttcactctggagaaaatatcagagaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagtaggattccatgttatcttttcaaaaatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50659" stop="48628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48928" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="478" r_length="159" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E294445" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294445" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTC-AAAATATT</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCGTGGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGAGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTAGGATTCCATGTTATCTTTTCAAAAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294444" ref_strand="+" ref_description="SGN-E294444 [cLET-14-B14]">
      <seq>gcaagcacagtaatgagctcgtggagcctaaagccaactttcactctggagaaaatatcagagaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagtaggattccatgttatcttttcaaaaatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50659" stop="48628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48928" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="478" r_length="159" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E294444" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTC-AAAATATT</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCGTGGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGAGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTAGGATTCCATGTTATCTTTTCAAAAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291882" ref_strand="+" ref_description="SGN-E291882 [cLET-7-D20]">
      <seq>caaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgatcttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="49655" stop="48631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49355" g_stop="49326" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="83" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49085" g_stop="48931" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="238" r_length="155" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E291882" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49355" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAAT</genome_strand>
        <mrna_strand>CAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGATCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E403714" ref_strand="-" ref_description="SGN-E403714 [PPC-11-D7]">
      <seq>tcccaaagttggacatcaagtggccgaagaaaaaaggtataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactttggagaaaacatcagtgaaagggcttccatcacttgctagatcttcttcttccttcaaagttgtggctagtggtgtcaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatgggcttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacagatgagtggtctccaagtggtgatgtctatgttggaggtaccactggattagccatatgggccgtgaccttggttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcacagtagatgttatccttgtattgtactattttaagttgtattccatgtaatcttttcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50686" stop="48632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50385" g_stop="50209" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="202" r_length="176" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="261" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="317" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="370" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48932" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="520" r_length="150" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E403714" ref_strand="-">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E403714" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="50385" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAA</genome_strand>
        <mrna_strand>AAGAAAAAAGGT-ATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTTTGGAGAAAACATCAGTGAAAGGGCTTCCATCACTTGCTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTCAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGCTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACAGATGAGTGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGATTAGCCATATGGGCCGTGACCTTGGTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCACAGTAGATGTTATCCTTGTATTGTACTA-T---TTTAAGTTGTATTCCATGTAATCTTTTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E616468" ref_strand="+" ref_description="SGN-E616468 [66278]">
      <seq>ngaaaagaagaaaaaaggtataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactttggagaaaacatcagtgaaagggcttccatcacttgctaggtcttcttctcccttcaaagttgtggctagtggtgtcaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatgggcttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacagatgagtggtctccaagtggtgatgtctatgttggaggtaccacgggcttagccatatgggccgtgaccttggttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcacagtagatgttatccttgtattgtactattttaagttgtattccatgtaatcttttcaaaaatacttcaaaatatttccaggcatcttgattaatatgtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50690" stop="48626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50392" g_stop="50209" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="242" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="298" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="351" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48933" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="500" r_length="149" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="540" polyA_stop="552"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E616468" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E616468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50392" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACAAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAA</genome_strand>
        <mrna_strand>NGAAAAGAAGAAAAAAGGT-ATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTTTGGAGAAAACATCAGTGAAAGGGCTTCCATCACTTGCTAGGTCTTCTTCTCCCTTCAAAGTTGTGGCTAGTGGTGTCAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGCTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACAGATGAGTGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACGGGCTTAGCCATATGGGCCGTGACCTTGGTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCACAGTAGATGTTATCCTTGTATTGTACTA-T---TTTAAGTTGTATTCCATGTAATCTTTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E400587" ref_strand="+" ref_description="SGN-E400587 [PPC-1-F1]">
      <seq>aagaagaaaaaggtataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactttggagaaaacatcagtgaaagggcttccatcacttgctagatcttcttcttccttcaaagttgtggctagtggtgtcaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatgggcttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacagatgagtggtctccaagtggtgatgtctatgttggaggtaccactggattagccatatgggccgtgaccttggttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcacagtagatgttatccttgtattgtactattttaagttgtattccatgtaatcttttcaaaaatacttcaaaatatttccaggcatcttgattaatatgtaattgctgtgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50688" stop="48594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50388" g_stop="50209" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="237" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="293" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="346" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48933" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="495" r_length="149" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="545" polyA_stop="554"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E400587" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E400587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50388" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAA</genome_strand>
        <mrna_strand>AAGAAGA-AAAAGGT-ATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTTTGGAGAAAACATCAGTGAAAGGGCTTCCATCACTTGCTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTCAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGCTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACAGATGAGTGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGATTAGCCATATGGGCCGTGACCTTGGTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCACAGTAGATGTTATCCTTGTATTGTACTA-T---TTTAAGTTGTATTCCATGTAATCTTTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E613306" ref_strand="+" ref_description="SGN-E613306 [63078]">
      <seq>gaagaaaaaaggtataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactttggagaaaacatcagtgaaagggcttccatcacttgctaggtcttcttctcccttcaaagttgtggctagtggtgtcaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatgggcttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacagatgagtggtctccaagtggtgatgtctatgttggaggtaccacgggcttagccatatgggccgtgaccttggttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcacagtagatgttatccttgtattgtactattttaagttgtattccatgtaatcttttcaaaaatacttcaaaatatttccaggcatcttgattaatatgtaattgctgtgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50686" stop="48594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50386" g_stop="50209" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="236" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="292" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="345" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48933" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="494" r_length="149" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E613306" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E613306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50386" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAA</genome_strand>
        <mrna_strand>GAAGAAAAAAGGT-ATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTTTGGAGAAAACATCAGTGAAAGGGCTTCCATCACTTGCTAGGTCTTCTTCTCCCTTCAAAGTTGTGGCTAGTGGTGTCAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGCTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACAGATGAGTGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACGGGCTTAGCCATATGGGCCGTGACCTTGGTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCACAGTAGATGTTATCCTTGTATTGTACTA-T---TTTAAGTTGTATTCCATGTAATCTTTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466382" ref_strand="+" ref_description="SGN-E466382 [cPRO-24-E15]">
      <seq>aaaaaaggtataggagaaaatggcgagcacagtaatgagctcattgagcctaaagccaactttcactttggagaaaacatcagtgaaagggcttccatcacttgctaggtcttcttcttccttcaaagttgtggctagtggtgtcaagaagctcaagaccgacaaaccctatggaattaatggaagcatggccttgagagatgggcttgatgcctcacgcaggaagcccaagggaaagggtgtgtaccaatttgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacagatgattggtctgcaagtggtgatgtgtatgttagaggtaccactggcttacccatatgggccgtgaccttggttggcattcttgcacgaggtgctctccttgtctacgacaccagtgctttggcacaggagatgttatccttgtattgtactattttaaggtgaattccatgtaatcttttcaaaaatacttcaaaatatttcctggcatcttgattaatatgtaattgctgtgattttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50682" stop="48587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50382" g_stop="50209" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="232" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="288" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="341" r_length="53" r_score="0.906"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48933" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="490" r_length="149" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E466382" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E466382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50382" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAA</genome_strand>
        <mrna_strand>AAAAAAGGT-ATAGGAGAAAATGGCGAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTTTGGAGAAAACATCAGTGAAAGGGCTTCCATCACTTGCTAGGTCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTCAAGAAGCTCAAGACCGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGCTTGATGCCTCACGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATTTGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACAGATGATTGGTCTGCAAGTGGTGATGTGTATGTTAGAG...............................................................................................................GTACCACTGGCTTACCCATATGGGCCGTGACCTTGGTTGGCATTCTTGCACGAGGTGCTCTCCTTGTCTACGACACCAGTGCTTTGGCACAGGAGATGTTATCCTTGTATTGTACTA-T---TTTAAGGTGAATTCCATGTAATCTTTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E403490" ref_strand="+" ref_description="SGN-E403490 [PPC-10-D18]">
      <seq>gaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactttggagaaaacatcagtgaaagggcttccatcacttgctagatcttcttcttccttcaaagttgtggctagtggtgtcaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatgggcttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacagatgagtggtctccaagtggtgatgtctatgttggaggtaccactggattagccatatgggccgtgaccttggttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcacagtagatgttatccttgtattgtactattttaagttgtattccatgtaatcttttcaaaaatacttcaaaatatttccaggcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50666" stop="48626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50366" g_stop="50209" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="217" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="273" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="326" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48933" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="475" r_length="149" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="499" polyA_stop="514"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E403490" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E403490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50366" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAA</genome_strand>
        <mrna_strand>GAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTTTGGAGAAAACATCAGTGAAAGGGCTTCCATCACTTGCTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTCAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGCTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACAGATGAGTGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGATTAGCCATATGGGCCGTGACCTTGGTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCACAGTAGATGTTATCCTTGTATTGTACTA-T---TTTAAGTTGTATTCCATGTAATCTTTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367359" ref_strand="+" ref_description="SGN-E367359 [cLPT-7-O19]">
      <seq>aagcacagtaatgagctcattgagcctaaagccaactttcactttggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagaggtggcaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacagatgaatggtctccaagtggtgatgtttatgttggaggtaccactggcttagccatatgggctgtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcacaggagatgttatccttgtattgtactattttaagtttaagttgtattccatgttatcttttcaaagatacttcaaatatttcttggcatcttcattaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50657" stop="48607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50357" g_stop="50209" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="208" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="264" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="317" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48933" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="472" r_length="155" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E367359" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50357" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTA--TTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAA</genome_strand>
        <mrna_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTTTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGAGGTGGCAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACAGATGAATGGTCTCCAAGTGGTGATGTTTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCTGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCACAGGAGATGTTATCCTTGTATTGTACTATTTTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469212" ref_strand="+" ref_description="SGN-E469212 [cSTB-10-J6]">
      <seq>cacagtaatgagctcattgagcctaaagccaactttcactttggagaaaacatcagtgaaagggcttccatcacttgctagatcttcttcttccttcaaagttgtggctagtggtgtcaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatgggcttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacagatgagtggtctccaagtggtgatgtctatgttggaggtaccactggattagccatatgggccgtgaccttggttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcacagtagatgttatccttgtattgtactattttaagttgtattccatgtaatcttttcaaaaatacttcaaaatatttccaggcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50654" stop="48626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50354" g_stop="50209" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="205" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="261" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="314" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48933" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="463" r_length="149" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="487" polyA_stop="498"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E469212" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E469212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50354" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAA</genome_strand>
        <mrna_strand>CACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTTTGGAGAAAACATCAGTGAAAGGGCTTCCATCACTTGCTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTCAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGCTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACAGATGAGTGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGATTAGCCATATGGGCCGTGACCTTGGTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCACAGTAGATGTTATCCTTGTATTGTACTA-T---TTTAAGTTGTATTCCATGTAATCTTTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740955" ref_strand="+" ref_description="SGN-E740955 [LC23CE08]">
      <seq>cagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50652" stop="48630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50352" g_stop="50209" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="203" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="259" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="312" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48933" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="465" r_length="153" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="466" polyA_stop="478"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E740955" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50352" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAA</genome_strand>
        <mrna_strand>CAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E621483" ref_strand="+" ref_description="SGN-E621483 [75229]">
      <seq>ttcactttggagaaaacatcagtgaaagggcttccatcacttgctaggtcttcttctcccttcaaagttgtggctagtggtgtcaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatgggcttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacagatgagtggtctccaagtggtgatgtctatgttggaggtaccacgggcttagccatatgggccgtgaccttggttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcacagtagatgttatccttgtattgtactattttaagttgtattccatgtaatcttttcaaaaatacttcaaaatatttccaggcatcttgattaatatgtaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50620" stop="48626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50320" g_stop="50209" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="171" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="227" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="280" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48933" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="429" r_length="149" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E621483" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E621483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50320" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAA</genome_strand>
        <mrna_strand>TTCACTTTGGAGAAAACATCAGTGAAAGGGCTTCCATCACTTGCTAGGTCTTCTTCTCCCTTCAAAGTTGTGGCTAGTGGTGTCAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGCTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACAGATGAGTGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACGGGCTTAGCCATATGGGCCGTGACCTTGGTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCACAGTAGATGTTATCCTTGTATTGTACTA-T---TTTAAGTTGTATTCCATGTAATCTTTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E621151" ref_strand="+" ref_description="SGN-E621151 [71858]">
      <seq>tcactttggagacaacatcagtgaaaggcttccatcacttgctaggtcttcttctcccttcaaagttgtggctagtggtgtcagaagttaagatgacaaaccctatggaattatggaagcatgcgcttgagagatgggcttgatgcctcaggcaggaagccaaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacagatgagtggtctccaaagtggtgatgtctatgtttggcaggtaccacgggcttagccatatgggccgtgaccttggttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcacagtagatgttatccttgtattgtactatttcaagttgtatcccatgtaatcttttcaaaaatacttccaaaatatttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50619" stop="48667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50319" g_stop="50209" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.901"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="165" r_length="58" r_score="0.915"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="221" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="277" r_length="56" r_score="0.849"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.83"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48933" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="426" r_length="149" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E621151" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E621151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50319" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCC-AAGTGGTGATGTCTATG-TTGG-AGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAA</genome_strand>
        <mrna_strand>TCACTTTGGAGACAACATCAGTGAAA-GGCTTCCATCACTTGCTAGGTCTTCTTCTCCCTTCAAAGTTGTGGCTAGTGGTG-TCAGAAG-TTAAGA-TGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATT-ATGGAAGCATGCGCTTGAGAGATGGGCTTGATGCCTCAGGCAGGAAGCCAAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACAGATGAGTGGTCTCCAAAGTGGTGATGTCTATGTTTGGCAG...............................................................................................................GTACCACGGGCTTAGCCATATGGGCCGTGACCTTGGTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCACAGTAGATGTTATCCTTGTATTGTACTA-T---TTCAAGTTGTATCCCATGTAATCTTTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296296" ref_strand="-" ref_description="SGN-E296296 [cLET-19-I4](-)">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50659" stop="48634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48934" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="471" r_length="152" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E296296" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296296" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAA</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296434" ref_strand="+" ref_description="SGN-E296434 [cLET-19-I4]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50659" stop="48634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48934" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="471" r_length="152" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E296434" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAA</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291388" ref_strand="+" ref_description="SGN-E291388 [cLET-2-D22]">
      <seq>agaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggagaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaaggttaagatgtattccatgttatcttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50682" stop="48636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50382" g_stop="50209" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="233" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="289" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="342" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48936" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="492" r_length="150" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E291388" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50382" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTC</genome_strand>
        <mrna_strand>AGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGAGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGGTTAAGATGTATTCCATGTTATCTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284732" ref_strand="+" ref_description="SGN-E284732 [cLES-3-C21]">
      <seq>acagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgtaggaggaaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttgggcgcaatagatgttatccttgtattgcactattaagattaagttgtattccatgtaatcttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50653" stop="48636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50353" g_stop="50209" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="204" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="260" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="313" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48936" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="464" r_length="151" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E284732" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50353" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTT-GGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTC</genome_strand>
        <mrna_strand>ACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTAGGAG...............................................................................................................GAACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGGCGCAATAGATGTTATCCTTGTATTGCACTATTAAGATTAAGTTGTATTCCATGTAATCTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468475" ref_strand="+" ref_description="SGN-E468475 [cSTB-4-L8]">
      <seq>agaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactttggagaaaacatcagtgaaagggcttccatcacttgctagatcttcttcttccttcaaagttgtggctagtggtgtcaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatgggcttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacagatgagtggtctccaagtggtgatgtctatgttggaggtaccactggattagccatatgggccgtgaccttggttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcacagtagatgttatccttgtattgtactattttaagttgtattccatgtaatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50667" stop="48667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50367" g_stop="50209" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="218" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="274" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="327" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48938" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="471" r_length="144" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E468475" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E468475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50367" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTT</genome_strand>
        <mrna_strand>AGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTTTGGAGAAAACATCAGTGAAAGGGCTTCCATCACTTGCTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTCAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGCTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACAGATGAGTGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGATTAGCCATATGGGCCGTGACCTTGGTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCACAGTAGATGTTATCCTTGTATTGTACTA-T---TTTAAGTTGTATTCCATGTAATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288401" ref_strand="-" ref_description="SGN-E288401 [cLES-16-F19]">
      <seq>tgtatcagtaatgagctcattgagcctaaagccatctttcactctggagaaaatatcagtgaaagggcttccatcactaactagatcttcttcttccttcaaagttgtggctagtggtgttcaagagcttaagactggcaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatatacaacacgaatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50655" stop="48643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50356" g_stop="50209" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="208" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="264" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="317" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48943" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="460" r_length="143" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E288401" ref_strand="-">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288401" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="50356" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCA-CAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTA</genome_strand>
        <mrna_strand>TGTATCAGTAATGAGCTCATTGAGCCTAAAGCCATCTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTAACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTCAAGAGCTTAAGACTGGCAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATATACAACACGAATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295938" ref_strand="+" ref_description="SGN-E295938 [cLET-27-L15]">
      <seq>agtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttggattgtactattaagtttaagttgtattccatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50651" stop="48645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50351" g_stop="50209" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="311" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48945" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="452" r_length="141" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E295938" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50351" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGT</genome_strand>
        <mrna_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGGATTGTACTATTAAGTTTAAGTTGTATTCCATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292845" ref_strand="+" ref_description="SGN-E292845 [cLET-11-G16]">
      <seq>aatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgcactattaagtttaagttgtattccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50648" stop="48647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50348" g_stop="50209" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="199" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="255" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="308" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48947" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="447" r_length="139" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E292845" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50348" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCAT</genome_strand>
        <mrna_strand>AATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGCACTATTAAGTTTAAGTTGTATTCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E613804" ref_strand="+" ref_description="SGN-E613804 [63583]">
      <seq>gaagaaaaaaggtataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactttggagaaaacatcagtgaaagggcttccatcacttgctaggtcttcttctcccttcaaagttgtggctagtggtgtcaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatgggcttgatgcctcaggcaggaagcccataggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacagatgagtggtctccaagtggtgatgtctatgttggaggtaccacgggcttagccatatgggccgtgaccttggttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcacagtagatgttatccttgtattgtactattttaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50686" stop="48667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50386" g_stop="50209" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="236" r_length="59" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="292" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="345" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48956" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="471" r_length="126" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E613804" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E613804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50386" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTT</genome_strand>
        <mrna_strand>GAAGAAAAAAGGT-ATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTTTGGAGAAAACATCAGTGAAAGGGCTTCCATCACTTGCTAGGTCTTCTTCTCCCTTCAAAGTTGTGGCTAGTGGTGTCAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGCTTGATGCCTCAGGCAGGAAGCCCATA............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACAGATGAGTGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACGGGCTTAGCCATATGGGCCGTGACCTTGGTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCACAGTAGATGTTATCCTTGTATTGTACTA-T---TTTAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325507" ref_strand="+" ref_description="SGN-E325507 [cTOC-1-P22]">
      <seq>gcaagcatatatttgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50646" stop="48661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48961" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="444" r_length="125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E325507" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTT</genome_strand>
        <mrna_strand>GCAAGCATATATTTGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283806" ref_strand="+" ref_description="SGN-E283806 [cLES-1-J11]">
      <seq>caagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattggactattaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50658" stop="48664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50358" g_stop="50209" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="209" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="265" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="318" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48964" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="440" r_length="122" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E283806" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50358" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAG</genome_strand>
        <mrna_strand>CAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGGACTATTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396288" ref_strand="+" ref_description="SGN-E396288 [TUS-46-H10]">
      <seq>caagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttatccatatgggcggtgaccttgcttggcattcttgcaggaggtgatcaccttgtctacgacacaagtgctttggctcaatatatgttatcattgtattgtactattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50658" stop="48665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50358" g_stop="50209" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="209" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="265" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="318" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48965" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="439" r_length="121" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E396288" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50358" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAA</genome_strand>
        <mrna_strand>CAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTATCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGATCACCTTGTCTACGACACAAGTGCTTTGGCTCAATATATGTTATCATTGTATTGTACTATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326235" ref_strand="+" ref_description="SGN-E326235 [cTOC-16-H8]">
      <seq>aggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaaggtgtggctagtggagttaacaaacttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggatgatgcctcaagcaggaagccctagggaaagggtgtgtaccaatatgatgacaaatatggagctaatgttgatggataacagtcccatctactacaccgatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcgttcttgcatgaggtgctctccgtgtctacacactagagctttggcgccatagacgttatccttgtattggactatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50677" stop="48667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50377" g_stop="50209" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="228" r_length="59" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="285" r_length="57" r_score="0.946"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="338" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48967" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="456" r_length="118" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E326235" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50377" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGAT-ACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATT</genome_strand>
        <mrna_strand>AGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGGTGTGGCTAGTGGAGTTAACAAACTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGATGATGCCTCAAGCAGGAAGCCCTAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGATGACAAATATGGAGCTAATGTTGATGGATAACAG............................................................................TCCCATCTACTACACCGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCGTTCTTGCATGAGGTGCTCTCCGTGTCTAC-ACACTAGAGCTTTGGCGCCATAGACGTTATCCTTGTATTGGACTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290272" ref_strand="+" ref_description="SGN-E290272 [cLET-5-P1]">
      <seq>aaaatggcatgcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50665" stop="48667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50365" g_stop="50209" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="216" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="272" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="325" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48967" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="444" r_length="119" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E290272" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50365" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATT</genome_strand>
        <mrna_strand>AAAATGGCATGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286215" ref_strand="+" ref_description="SGN-E286215 [cLES-11-E12]">
      <seq>taatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50649" stop="48677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50349" g_stop="50209" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="200" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="256" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="309" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48977" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="418" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E286215" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50349" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTA</genome_strand>
        <mrna_strand>TAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E401518" ref_strand="+" ref_description="SGN-E401518 [PPC-4-O4]">
      <seq>gtgagagcaaaagaagaaaaaaagngtataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactttggagaaaacatcagtgaaagggcttccatcacttgctagatcttcttcttccttcaaagttgtggctagtggtgtcaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggcgttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacagatgagtggtctccaagtggtgatgtctatgttggaggtactactggcttagccatatgggccgtgaccttggttggtattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcacagtagatgttatcctgtggtgtactattttaagttgtattcgagctcgcatcatgtaatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50696" stop="48667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50398" g_stop="50209" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="250" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="306" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="359" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48980" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="465" r_length="106" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E401518" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E401518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50398" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGAGCACAAGAAG-AGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTT</genome_strand>
        <mrna_strand>GTGAGAGCAAAAGAAGAAAAAAAGNGTATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTTTGGAGAAAACATCAGTGAAAGGGCTTCCATCACTTGCTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTCAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGCGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACAGATGAGTGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACTACTGGCTTAGCCATATGGGCCGTGACCTTGGTTGGTATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCACAGTAGATGTTATCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281899" ref_strand="+" ref_description="SGN-E281899 [cLES-2-L11]">
      <seq>aggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50670" stop="48683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50370" g_stop="50209" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="221" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="277" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="330" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48983" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="433" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E281899" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50370" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATC</genome_strand>
        <mrna_strand>AGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280952" ref_strand="+" ref_description="SGN-E280952 [cLER-7-G23]">
      <seq>taatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50649" stop="48684"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50349" g_stop="50209" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="200" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="256" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="309" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48984" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="411" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E280952" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50349" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTAT</genome_strand>
        <mrna_strand>TAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279759" ref_strand="+" ref_description="SGN-E279759 [cLER-8-C19]">
      <seq>tgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaagcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50646" stop="48684"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50346" g_stop="50209" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="197" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="253" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="306" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48984" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="408" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E279759" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50346" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTAT</genome_strand>
        <mrna_strand>TGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAAGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279231" ref_strand="-" ref_description="SGN-E279231 [cLEL-4-I23](-)">
      <seq>gcacgaggtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggctcccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacacgtgctttggcgcaatagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50655" stop="48689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="208" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="264" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="317" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48989" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="414" r_length="97" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E279231" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279231" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGAT</genome_strand>
        <mrna_strand>GCACG-A-GGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTCCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACACGTGCTTTGGCGCAATAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336394" ref_strand="+" ref_description="SGN-E336394 [cTOE-4-C3]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50659" stop="48694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48994" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="411" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E336394" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAA</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E471451" ref_strand="+" ref_description="SGN-E471451 [cSTB-24-G13]">
      <seq>gaaaaaaggtataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactttggagaaaacatcagtgaaagggcttccatcacttgctaggtcttcttcttccttcaaagttgtggctagtggtgtcaagaagctcaagaccgacaaaccctatggaattaatggaagcatggccttgagagatgggcttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatttgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacagatgattggtctgcaagtggtgatgtgtatgttggaggtaccactggcttagccatatgggccgtgaccttggttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50683" stop="48696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50383" g_stop="50209" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="233" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="289" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="342" r_length="53" r_score="0.925"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48996" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="432" r_length="90" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E471451" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E471451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50383" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGC</genome_strand>
        <mrna_strand>GAAAAAAGGT-ATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTTTGGAGAAAACATCAGTGAAAGGGCTTCCATCACTTGCTAGGTCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTCAAGAAGCTCAAGACCGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGCTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATTTGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACAGATGATTGGTCTGCAAGTGGTGATGTGTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCCGTGACCTTGGTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295181" ref_strand="+" ref_description="SGN-E295181 [cLET-20-L21]">
      <seq>agaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50682" stop="48697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50382" g_stop="50209" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="233" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="289" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="342" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48997" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="431" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E295181" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50382" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCG</genome_strand>
        <mrna_strand>AGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289010" ref_strand="+" ref_description="SGN-E289010 [cLES-17-B10]">
      <seq>gagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcacgcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50668" stop="48697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50368" g_stop="50209" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="219" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="275" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="328" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48997" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="417" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E289010" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50368" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCG</genome_strand>
        <mrna_strand>GAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCACGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281073" ref_strand="+" ref_description="SGN-E281073 [cLER-7-G11]">
      <seq>agtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50651" stop="48697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50351" g_stop="50209" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="311" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48997" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="400" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E281073" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50351" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCG</genome_strand>
        <mrna_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278378" ref_strand="-" ref_description="SGN-E278378 [cLEL-2-B14](-)">
      <seq>gcacgaggctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagaccctcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50647" stop="48697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50350" g_stop="50209" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="201" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="257" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="310" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48997" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="399" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E278378" ref_strand="-">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278378" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="50350" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCG</genome_strand>
        <mrna_strand>GCACGAGGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGACCCTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278099" ref_strand="+" ref_description="SGN-E278099 [cLER-4-K14]">
      <seq>ctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50642" stop="48697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50342" g_stop="50209" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="193" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="249" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="302" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48997" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="391" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E278099" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50342" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCG</genome_strand>
        <mrna_strand>CTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284566" ref_strand="+" ref_description="SGN-E284566 [cLES-3-F18]">
      <seq>tcattgagcctaaagccaactttcactctggagaaaatatcaatgaaagggcttccatcacttactagatcttcttcttccttcaaagttgaggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaagcaggaagcccaagggaaagggtgtgtcccaatatgttgacaaatatggagctaatgttgatggatacagccccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggagaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50641" stop="48697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50341" g_stop="50209" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="192" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="248" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="301" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48997" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="390" r_length="89" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E284566" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50341" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCG</genome_strand>
        <mrna_strand>TCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAATGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGAGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAAGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTCCCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................CCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGAGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E409546" ref_strand="+" ref_description="SGN-E409546 [PPI-14-K2]">
      <seq>aagcacagtaatgagctcattgagcctaaagccaactttcactttggagaaaacatcagtgaaagggcttccatcacttgctagatcttcttcttccttcaaagttgtggctagtggtgtcaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggcgttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacagatgagtggtctccaagtggtgatgtctatgttggaggtactactggcttagccatatgggccgtgaccttggttggtattcttgcaggaggtgctctccttgtctacacacaagtgctttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50657" stop="48698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50357" g_stop="50209" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="208" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="264" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="317" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48998" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="404" r_length="87" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E409546" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E409546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50357" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGC</genome_strand>
        <mrna_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTTTGGAGAAAACATCAGTGAAAGGGCTTCCATCACTTGCTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTCAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGCGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACAGATGAGTGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACTACTGGCTTAGCCATATGGGCCGTGACCTTGGTTGGTATTCTTGCAGGAGGTGCTCTCCTTGTCTAC-ACACAAGTGCTTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294085" ref_strand="+" ref_description="SGN-E294085 [cLET-13-E10]">
      <seq>agaaaaggttataggagaaaatggcaagcacaggaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctattttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattctagcaggaggagctctccttgtctacaacacaagtgctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50682" stop="48700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50382" g_stop="50209" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="233" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="289" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="342" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="49000" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="428" r_length="86" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E294085" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50382" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="49000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTG</genome_strand>
        <mrna_strand>AGAAAAGGTTATAGGAGAAAATGGCAAGCACAGGAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATTTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTAGCAGGAGGAGCTCTCCTTGTCTACAACACAAGTGCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293269" ref_strand="+" ref_description="SGN-E293269 [cLET-18-I7]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50659" stop="48700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="49000" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="405" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E293269" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="49000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTG</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283962" ref_strand="+" ref_description="SGN-E283962 [cLER-13-N5]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50659" stop="48701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="49001" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="404" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E283962" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="49001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTT</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735796" ref_strand="+" ref_description="SGN-E735796 [LC03AD04]">
      <seq>cccgattaatagaaaaggtaataggagaaaatggcaagcacagtactgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcacgaggcgctctccttgtctacaacacaagtgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50691" stop="48702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50392" g_stop="50209" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="243" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="299" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="352" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="49002" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="436" r_length="84" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E735796" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50392" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="49002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACAAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTT</genome_strand>
        <mrna_strand>CCCGATTAATAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTACTGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCACGAGGCGCTCTCCTTGTCTACAACACAAGTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284981" ref_strand="+" ref_description="SGN-E284981 [cLER-19-K9]">
      <seq>agtaatgagctcttttagcctatagccaactttcactctggagaggaatatcagggaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggcctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50651" stop="48702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50351" g_stop="50209" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="203" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="259" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="312" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="49002" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="396" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E284981" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50351" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="49002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGA-AAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTT</genome_strand>
        <mrna_strand>AGTAATGAGCTCTTTTAGCCTATAGCCAACTTTCACTCTGGAGAGGAATATCAGGGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGCCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308569" ref_strand="+" ref_description="SGN-E308569 [cLEY-21-K7]">
      <seq>ctcgtgccgaattcggcacgaggacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagggaaagggctgccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggggaccttgcttggcattcttgcaggaggtgctcttcttgtctacaacacaagggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50658" stop="48703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50354" g_stop="50209" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="168" r_length="146" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="227" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="283" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="336" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="49003" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="419" r_length="83" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E308569" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50354" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="49003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCT</genome_strand>
        <mrna_strand>GACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGGGAAAGGGCTGCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGGGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTTCTTGTCTACAACACAAGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296928" ref_strand="+" ref_description="SGN-E296928 [cLET-26-O10]">
      <seq>aaaatatcagtgaaagggcgtccatcacttactagatcttcttcttccttcaaagttgtggcttgtggtgtcaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgacagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatgtgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctacaagtggtgatgactatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50608" stop="48703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50308" g_stop="50209" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="159" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="215" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="268" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="49003" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="351" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E296928" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50308" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="49003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCT</genome_strand>
        <mrna_strand>AAAATATCAGTGAAAGGGCGTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTTGTGGTGTCAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGACAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATGTGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTACAAGTGGTGATGACTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290957" ref_strand="+" ref_description="SGN-E290957 [cLET-8-I4]">
      <seq>ggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50660" stop="48710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50360" g_stop="50209" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="211" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="267" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="320" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="49010" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="396" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E290957" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50360" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="49010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACAC</genome_strand>
        <mrna_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293673" ref_strand="+" ref_description="SGN-E293673 [cLET-21-K9]">
      <seq>cacagaaatgagctccttgtttctaatttcactttcactctcgagaaactatcactgaaggggcttccatcacttactagatcttcttcttccttcaaagctgtggctagtgctgttaataatctcaagactgacaaaccctatcgtattaatggaagcatggccttaccagatggggttgatgcctcaagcaagaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggaactaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttacccatatgggcggtgaccttgcttggcattcttgcaggaggagctctccttgtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50623" stop="48716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50354" g_stop="50209" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.870"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.996" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="204" r_length="59" r_score="0.898"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="260" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="313" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="49016" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="383" r_length="70" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E293673" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50354" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="49016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTA</genome_strand>
        <mrna_strand>CACAGAAATGAGCTCCTTGTTTCTAATTTC-ACTTTCACTCTCGAGAAACTATCACTGAAGGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGCTGTGGCTAGTGCTGTTAATAATCTCAAGACTGACAAACCCTATC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATGGAAGCATGGCCTTACCAGATGGGGTTGATGCCTCAAGCAAGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAACTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTACCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGAGCTCTCCTTGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E216714" ref_strand="-" ref_description="SGN-E216714 [cLEL-1-C15](-)">
      <seq>ggcctctttctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagcggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50642" stop="48718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50342" g_stop="50209" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="143" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="311" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="49018" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="379" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E216714" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216714" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="50342" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="49018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTC</genome_strand>
        <mrna_strand>CTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGCGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337484" ref_strand="+" ref_description="SGN-E337484 [cTOE-11-J15]">
      <seq>cacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatattggcggtgaccttgcttggcattctttgcagaggtgctctcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50654" stop="48722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50354" g_stop="50209" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="205" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="261" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="314" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="49022" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="378" r_length="64" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E337484" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50354" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="49022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCT</genome_strand>
        <mrna_strand>CACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATTGGCGGTGACCTTGCTTGGCATTCTTTGCAGAGGTGCTCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284238" ref_strand="+" ref_description="SGN-E284238 [cLER-16-M4]">
      <seq>agaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggttgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50667" stop="48726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50367" g_stop="50209" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="218" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="274" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="327" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="49026" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="387" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E284238" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50367" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="49026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTC</genome_strand>
        <mrna_strand>AGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGTTGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284745" ref_strand="+" ref_description="SGN-E284745 [cLES-3-M23]">
      <seq>aagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgcggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtcttcaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50657" stop="48736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50357" g_stop="50209" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="208" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="264" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="317" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="49036" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="367" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E284745" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50357" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="49036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCA</genome_strand>
        <mrna_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGCGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTTCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293376" ref_strand="+" ref_description="SGN-E293376 [cLET-18-H1]">
      <seq>agaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggggaccttgcttggcattcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50682" stop="48738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50382" g_stop="50209" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="233" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="289" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="342" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="49038" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="390" r_length="48" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E293376" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50382" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="49038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTG</genome_strand>
        <mrna_strand>AGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGGGACCTTGCTTGGCATTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280187" ref_strand="-" ref_description="SGN-E280187 [cLEL-7-O20](-)">
      <seq>gcacgaggtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggctcccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggcgaccttgcttggcattcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50655" stop="48738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="208" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="264" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="317" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="49038" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="365" r_length="48" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E280187" ref_strand="-">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280187" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="49038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTG</genome_strand>
        <mrna_strand>GCACG-A-GGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTCCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGCGACCTTGCTTGGCATTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277670" ref_strand="-" ref_description="SGN-E277670 [cLEL-5-A21](-)">
      <seq>gcacgaggtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtcccaagtggnggatgtctatgttgggaggtaccactggcttagccatatggggcggtgaccttgcttggcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50655" stop="48741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="208" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="264" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="318" r_length="54" r_score="0.887"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.88"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="49041" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="364" r_length="46" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E277670" ref_strand="-">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277670" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="49041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGT-GATGTCTATGTT-GGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATAT-GGGCGGTGACCTTGCTTGGCATTC</genome_strand>
        <mrna_strand>GCACG-A-GGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTC-CCAAGTGGNGGATGTCTATGTTGGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGGCGGTGACCTTGCTTGGCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298979" ref_strand="+" ref_description="SGN-E298979 [cLET-42-O20]">
      <seq>agtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50651" stop="48741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50351" g_stop="50209" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="311" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="49041" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="356" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E298979" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50351" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="49041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTC</genome_strand>
        <mrna_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281246" ref_strand="-" ref_description="SGN-E281246 [cLEL-1-M9](-)">
      <seq>gcacgaggtaataggagaaaatggcatgcacagtaatgagctcattgagcctggggccaactttcactctggagaaaaccccagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50677" stop="48748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50382" g_stop="50209" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="233" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="289" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="342" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="49048" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="380" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E281246" ref_strand="-">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281246" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="50382" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="49048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTT</genome_strand>
        <mrna_strand>GCACGAGGTAATAGGAGAAAATGGCATGCACAGTAATGAGCTCATTGAGCCTGGGGCCAACTTTCACTCTGGAGAAAACCCCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277294" ref_strand="-" ref_description="SGN-E277294 [cLEL-3-H18](-)">
      <seq>gcacgagagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcaccgcaccgggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50675" stop="48748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50375" g_stop="50209" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="226" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="282" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="335" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="49048" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="373" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E277294" ref_strand="-">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277294" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="50375" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="49048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTG-AAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTT</genome_strand>
        <mrna_strand>GCACGA-GAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCACCGCACCGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281275" ref_strand="-" ref_description="SGN-E281275 [cLEL-1-E12](-)">
      <seq>gcacgagcagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50659" stop="48750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="49050" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="355" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E281275" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281275" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="49050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGC</genome_strand>
        <mrna_strand>GCACGAGCAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E569927" ref_strand="+" ref_description="SGN-E569927 [14430]">
      <seq>ggcaagcacagtaatgagctcattgagcctaaagccaactttcactttggagaaaacatcagtgaaagggcttccatcacttgctagatcttcttcttccttcaaagttgtggctagtggtgtcaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggcgttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacagatgagtggtctccaagtggtgatgtctatgttggaggtactactggcttagccatatgggccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50660" stop="48758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50360" g_stop="50209" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="211" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="267" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="320" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="49058" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="348" r_length="28" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E569927" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E569927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50360" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="49058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGT</genome_strand>
        <mrna_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTTTGGAGAAAACATCAGTGAAAGGGCTTCCATCACTTGCTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTCAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGCGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACAGATGAGTGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACTACTGGCTTAGCCATATGGGCCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228250" ref_strand="+" ref_description="SGN-E228250 [cLED-2-P11]">
      <seq>caagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50658" stop="48760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50358" g_stop="50209" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="209" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="265" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="318" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="49060" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="344" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E228250" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50358" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="49060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCG</genome_strand>
        <mrna_strand>CAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239515" ref_strand="+" ref_description="SGN-E239515 [cLED-23-L22]">
      <seq>gaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50666" stop="48761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50366" g_stop="50209" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="217" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="273" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="326" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="49061" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="351" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E239515" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50366" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="49061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGC</genome_strand>
        <mrna_strand>GAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E401378" ref_strand="+" ref_description="SGN-E401378 [PPC-4-A1]">
      <seq>ggagcaaaagaagaaaaaaggtataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactttggagaaaacatcagtgaaagggcttccatcacttgctaggtcttcttcttccttcaaagttgtggctagtggtgtcaagaagctcaagaccgacaaaccctatggaattaatggaagcatggccttgagagatgggcttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatttgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacagatgattggtctgcaagtggtgatgtgtatgttggaggtaccactggcttagccatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50695" stop="48765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50395" g_stop="50209" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="245" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="301" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="354" r_length="53" r_score="0.925"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="49065" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="375" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E401378" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E401378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50395" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="49065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGCACAAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATAT</genome_strand>
        <mrna_strand>GGAGCAAAAGAAGAAAAAAGGTA-TAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTTTGGAGAAAACATCAGTGAAAGGGCTTCCATCACTTGCTAGGTCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTCAAGAAGCTCAAGACCGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGCTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATTTGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACAGATGATTGGTCTGCAAGTGGTGATGTGTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338463" ref_strand="+" ref_description="SGN-E338463 [cTOE-15-D13]">
      <seq>gaaaatggcaagcacagtaatgagctcattgagccctaaagccaacctttcactctggagaaaatatcagtgaaagggcttccatcacttacctagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggtcgatgccctcaagcaggaagcccaacggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggataccagtcccatctaccacacggatgaatggtctccaagtggtgatgtctatgttggacgtaccactggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50666" stop="48888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50366" g_stop="50209" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="221" r_length="60" r_score="0.915"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="278" r_length="57" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="331" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="49074" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="343" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E338463" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50366" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="49074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGGCAAGCACAGTAATGAGCTCATTGAGC-CTAAAGCCAA-CTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTA-CTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATG-CCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATA-CAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCT</genome_strand>
        <mrna_strand>GAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCCTAAAGCCAACCTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACCTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTCGATGCCCTCAAGCAGGAAGCCCAAC............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACCAG............................................................................TCCCATCTACCACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAC...............................................................................................................GTACCACTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290219" ref_strand="+" ref_description="SGN-E290219 [cLET-5-I2]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50659" stop="48894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="49078" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="327" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E290219" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="49078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACT</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280138" ref_strand="-" ref_description="SGN-E280138 [cLEL-7-K17](-)">
      <seq>gcacgagagctcattgagcctaaagcctactttcactctggagaaaatatcaggggaagggcttccatcacttactagacctccttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagcggtgatgtctatgttggaggtaccact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50645" stop="48894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50355" g_stop="50209" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="311" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="49078" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="319" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E280138" ref_strand="-">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280138" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="50355" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="49078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACT</genome_strand>
        <mrna_strand>GCAC-G--A-GAGCTCATTGAGCCTAAAGCCTACTTTCACTCTGGAGAAAATATCAGGGGAAGGGCTTCCATCACTTACTAGACCTCCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGCGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289877" ref_strand="+" ref_description="SGN-E289877 [cLET-9-P8]">
      <seq>agtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50651" stop="48898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50351" g_stop="50209" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49198" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="310" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E289877" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>310</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50351" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGA</genome_strand>
        <mrna_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284095" ref_strand="+" ref_description="SGN-E284095 [cLER-13-B17]">
      <seq>agtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50651" stop="48900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50351" g_stop="50209" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49200" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="308" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E284095" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50351" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTG</genome_strand>
        <mrna_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291402" ref_strand="+" ref_description="SGN-E291402 [cLET-2-J4]">
      <seq>aagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagggaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50657" stop="48903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50357" g_stop="50209" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="208" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="264" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49203" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="311" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E291402" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>311</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50357" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATG</genome_strand>
        <mrna_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGGGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293163" ref_strand="+" ref_description="SGN-E293163 [cLET-12-D16]">
      <seq>tggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50613" stop="48905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50313" g_stop="50209" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="164" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="220" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49205" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="265" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E293163" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>265</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50313" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTA</genome_strand>
        <mrna_strand>TGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296555" ref_strand="+" ref_description="SGN-E296555 [cLET-19-J20]">
      <seq>taatgagctcattgagcctaaattcaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50649" stop="48913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50349" g_stop="50209" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="200" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="256" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49213" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="293" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E296555" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>293</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50349" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGT</genome_strand>
        <mrna_strand>TAATGAGCTCATTGAGCCTAAATTCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296407" ref_strand="+" ref_description="SGN-E296407 [cLET-19-H2]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50659" stop="48918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49218" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="298" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E296407" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAA</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468468" ref_strand="+" ref_description="SGN-E468468 [cSTB-4-J12]">
      <seq>agaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactttggagaaaacatcagtgaaagggcttccatcacttgctagatcttcttcttccttcaaagttgtggctagtggtgtcaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatgggcttgatgcctcatgcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacagatgagtggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50667" stop="48923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50367" g_stop="50209" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="218" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="274" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49223" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="301" r_length="27" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E468468" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E468468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50367" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTC</genome_strand>
        <mrna_strand>AGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTTTGGAGAAAACATCAGTGAAAGGGCTTCCATCACTTGCTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTCAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGCTTGATGCCTCATGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACAGATGAGTGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277787" ref_strand="-" ref_description="SGN-E277787 [cLEL-5-A19](-)">
      <seq>gcacgaggaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaaggggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50670" stop="48926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50375" g_stop="50209" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="224" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="281" r_length="57" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49226" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="305" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E277787" ref_strand="-">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277787" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="50375" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAA-GGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATG</genome_strand>
        <mrna_strand>GCACGAGGA-AAA-TGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289648" ref_strand="+" ref_description="SGN-E289648 [cLET-4-P9]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50659" stop="48926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49226" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="290" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E289648" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>290</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATG</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291582" ref_strand="+" ref_description="SGN-E291582 [cLET-6-O20]">
      <seq>cacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaagcacgaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctaccacacggatgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50654" stop="49026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50354" g_stop="50209" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="205" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="261" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49226" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="285" r_length="24" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E291582" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>285</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50354" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATG</genome_strand>
        <mrna_strand>CACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAAGCACGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACCACACGGATGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290237" ref_strand="+" ref_description="SGN-E290237 [cLET-5-O4]">
      <seq>agaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgaaagatggggttgatgcctcaagcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50682" stop="48927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50382" g_stop="50209" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="233" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="289" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49227" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="312" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E290237" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>312</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50382" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAAT</genome_strand>
        <mrna_strand>AGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAAAGATGGGGTTGATGCCTCAAGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282342" ref_strand="+" ref_description="SGN-E282342 [cLER-18-M9]">
      <seq>acagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50653" stop="48930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50353" g_stop="50209" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="204" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="260" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49230" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="280" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E282342" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>280</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50353" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATG</genome_strand>
        <mrna_strand>ACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E463984" ref_strand="+" ref_description="SGN-E463984 [cPRO-16-H11]">
      <seq>gaaaaaaggtataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactttggagaaaacatcagtgaaagggcttccatcacttgctaggtcttcttcttccttcaaagttgtggctagtggtgtcaagaagctcaagaccgacaaaccctatggaattaatggaagcatggccttgagagatgggcttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatttgttgacaaatatggagctaatggtgatggatacagtcccatctaccaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50683" stop="49026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50383" g_stop="50209" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="233" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="289" r_length="56" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49236" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="303" r_length="14" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E463984" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E463984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50383" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACA</genome_strand>
        <mrna_strand>GAAAAAAGGT-ATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTTTGGAGAAAACATCAGTGAAAGGGCTTCCATCACTTGCTAGGTCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTCAAGAAGCTCAAGACCGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGCTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATTTGTTGACAAATATGGAGCTAATGGTGATGGATACAG............................................................................TCCCATCTACCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468480" ref_strand="+" ref_description="SGN-E468480 [cSTB-4-L20]">
      <seq>tgagaaaatggcaggcacagtaatgagctcattgagcctaaagccaactttcactttggagaaaacatcagtgaaagggcttccatcacttgctagatcttcttcttccttcaaagatgtggctagtggtgtcaagaagcttaagactgacaaaccctatggaattaatggaagcatggcctttgaaagatgggcttgatgccctaggcaagaagcccaaaggaaagggtgtgttccaatatgttgacaaatatggagctaatgttgatggatacagtccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50668" stop="49026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50369" g_stop="50209" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="221" r_length="60" r_score="0.864"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.84"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="277" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49245" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="282" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E468480" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>281</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E468480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50369" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCC-TTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCA</genome_strand>
        <mrna_strand>TGAGAAAATGGCAGGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTTTGGAGAAAACATCAGTGAAAGGGCTTCCATCACTTGCTAGATCTTCTTCTTCCTTCAAAGATGTGGCTAGTGGTGTCAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTTGAAAGATGGGCTTGATGCCCTAGGCAAGAAGCCCAAA............................................................................................................................................................GGAAAGGGTGTGTTCCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278368" ref_strand="-" ref_description="SGN-E278368 [cLEL-2-N1](-)">
      <seq>gcacgagaaatggcaagttcagtaatgagctcattgagcctaaagggaactttgactctggagaaaatatccgtgaaacggctttcatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50670" stop="49027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50372" g_stop="50209" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="222" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49327" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="277" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E278368" ref_strand="-">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>278</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278368" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="50372" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACA</genome_strand>
        <mrna_strand>GCACGAGA-AATGGCAAGTTCAGTAATGAGCTCATTGAGCCTAAAGGGAACTTTGACTCTGGAGAAAATATCCGTGAAACGGCTTTCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295977" ref_strand="+" ref_description="SGN-E295977 [cLET-27-A4]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagctgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50659" stop="49027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49327" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="265" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E295977" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>265</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACA</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGCTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E404746" ref_strand="+" ref_description="SGN-E404746 [PPC-15-K9]">
      <seq>gaagaagaaaaaaggtataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactttggagaaaacatcagtgaaagggcttccatcacttgctagatcttcttcttccttcaaagttgtggctagtggtgtcaagaagcttaagactgacaaaccctatggaattaatggaaacatggccttgagagatgggcttgatgcctcaggcaggaagcccaaaggaaagggtgtggaccaatatgttgacaaatatggaactaatggtgatggatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50688" stop="49028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50389" g_stop="50209" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="239" r_length="59" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.980" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49328" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="293" r_length="54" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E404746" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>294</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E404746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50389" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATAC</genome_strand>
        <mrna_strand>GAAGAAGAAAAAAGGT-ATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTTTGGAGAAAACATCAGTGAAAGGGCTTCCATCACTTGCTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTCAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAACATGGCCTTGAGAGATGGGCTTGATGCCTCAGGCAGGAAGCCCAAA............................................................................................................................................................GGAAAGGGTGTGGACCAATATGTTGACAAATATGGAACTAATGGTGATGGATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281570" ref_strand="-" ref_description="SGN-E281570 [cLEL-1-J12](-)">
      <seq>gcacgagcagtaatgagctcattgttcctaaagccaactttcactctggagagaatatcagtgaaagggcttcactaacttactagatcttcttattccttcaaaggtgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaatggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50659" stop="49029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49329" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="263" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E281570" ref_strand="-">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>263</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281570" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATA</genome_strand>
        <mrna_strand>GCACGAGCAGTAATGAGCTCATTGTTCCTAAAGCCAACTTTCACTCTGGAGAGAATATCAGTGAAAGGGCTTCACTAACTTACTAGATCTTCTTATTCCTTCAAAGGTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAT............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294778" ref_strand="+" ref_description="SGN-E294778 [cLET-17-F9]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50659" stop="49029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50359" g_stop="50209" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49329" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="263" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E294778" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>263</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50359" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATA</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289094" ref_strand="+" ref_description="SGN-E289094 [cLES-18-G22]">
      <seq>gagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50645" stop="49054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50345" g_stop="50209" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="196" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49354" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="224" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E289094" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>224</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50345" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACA</genome_strand>
        <mrna_strand>GAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E403631" ref_strand="+" ref_description="SGN-E403631 [PPC-11-A18]">
      <seq>tagcaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactttgtagaaaactcagtgaaagggcttccatcacttgctagatcttcttcttccttcaaagttgtggctaatggtgtcaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggcattaatgcctcaagcaggaaacccaagggaaagggtgtgtaccaatatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50667" stop="49060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50368" g_stop="50209" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="218" r_length="59" r_score="0.915"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49359" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="241" r_length="23" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E403631" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>242</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E403631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50368" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGT</genome_strand>
        <mrna_strand>TAGCAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTTTGTAGAAAA-CTCAGTGAAAGGGCTTCCATCACTTGCTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAATGGTGTCAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGCATTAATGCCTCAAGCAGGAAACCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290262" ref_strand="+" ref_description="SGN-E290262 [cLET-5-L3]">
      <seq>gagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50645" stop="49280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50345" g_stop="50209" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49580" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="154" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E290262" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>154</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50345" e_stop="50209"/>
          <exon e_start="49596" e_stop="49580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATG</genome_strand>
        <mrna_strand>GAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293842" ref_strand="+" ref_description="SGN-E293842 [cLET-37-G10]">
      <seq>agtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50651" stop="49900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50351" g_stop="50209" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E293842" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>143</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50351" e_stop="50209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG</genome_strand>
        <mrna_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286051" ref_strand="+" ref_description="SGN-E286051 [cLES-13-K13]">
      <seq>gagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50645" stop="49900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50345" g_stop="50209" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E286051" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>137</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50345" e_stop="50209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG</genome_strand>
        <mrna_strand>GAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379596" ref_strand="+" ref_description="SGN-E379596 [TUS-3-N18](-)">
      <seq>aaatggtttcctttctctggcttcctattctttcttctttgtgttggtgggtggtttaggaggtgaaggggagcagcgtggttgagaccgagactatcaggtggctaagtttccttgtggtggtcttgattcttcatcaaggtggcaaagatagtttggctctaaaaatagatacggtactggccttctgtgatgaaatgtgcttgaaggacagagcttctatccaagaagacggcaatccacatcacaaagagtttggcttgattcaaccaatgagcggaaggagattgtccaaagctgtacacactccatgatgtgcgtgccaggtggatttcatgctggagttactgtaaatagggttggataaaaaacatttttgcgagagtgatctgcattccagccccctctgaagcacaggagtcagctgcatttcaaatgattacccaattacagactatggcagaccacacccattacatttaatgatggcaaagaaacagcaacaccaatatttttgaatcctattaatggctaccataccatagtactgtattagtttcattactttccagaagcatatattatgtgtgtctgtgaaactgaatttgttgtcttagaatattagttggttgcaacccgtatcagtgctttgaacgaaaatcaaggccaaatacattcggtgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="53661" stop="52080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53361" g_stop="53221" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53220" i_stop="53125" i_length="96">
            <donor d_prob="0.527" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53124" g_stop="52940" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="326" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52939" i_stop="52737" i_length="203">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.896" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52736" g_stop="52380" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="685" r_length="359" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E379596" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53361" e_stop="53221"/>
          <exon e_start="53124" e_stop="52940"/>
          <exon e_start="52736" e_stop="52380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGTTTCCTTTCTCTTGCTTCCTATTCTTTCTTCTTTGTGTTGGTGGGTGGTTTAGGAGGTGAAGGGGAGCAGCGTGGTTGAGACCGAGACTATCAGGTGGCTAAGTTTCCTTGTGGTGGTCTTGATTCTTCATCAAGGTTTGGTAGTTTCTTGGAGTCTTGAACTGCTGTATCATGAACTTGAACTAAATTACTGTAGGCCAATGTGCTCATGTTTATTTTAATGCCTTGTAGGTGGCAAAGATAGTTTGGCTCTAAAAATAGATACGGTACTGGCCTTCTGTGATGAAATGTGCTTGAAGGACAGAGCTTCTATCCAAGAAGACGGCAATCCACATCACAAAGAGTTTGGCTTGATTCAACCAATGAGCGGAAGGAGATTGTCCAAAGCTGTACACACTCCATGATGTGCGTGCCAGGCATGTTTTGGCATCAGAACTTGCTTAAGTTTTATCTCCTCTTTTATCATTGTTTGTCTTGATCCACTCCATATATATTATGATGTTTGTGCTCTTGGTCTGGCAGTATGTCTGATAATTTGTTCCTTTGTTGAACGATCCTTGGAAATGCTTGTGTTTTTCATTCCCGATTCAACTAATCCTTGGAGTTCATTTTCTCATAGGTGGATTTCATGCTGGAGTTACTGTAAATAGGGTTGGAT-TTGTACATTTTTGCGAGAGTGATCTGCATTCCAGCCCCCTCTGAAGCACAGGAGTCAGCTGCATTTCAAATGATTACCCAATTACAGACTATGGCAGACCACACCCATTACATTTAATGATGGCAAAGAAACAGCAACACCAATATTTTTGAATCCTATTAATGGCTACCATACCATAGTACTGTATTAGTTTCATTACTTTCCAGAAGCAACTGTTATGTGTGTCTTTG-AGCTGAATTTGTTGTCTTAGAATATTAGTTGGTTGCAACCCGTATCAGTGCTTTGAACATTTATCAAGGCCAAATACATACGGTGCCT</genome_strand>
        <mrna_strand>AAATGGTTTCCTTTCTCTGGCTTCCTATTCTTTCTTCTTTGTGTTGGTGGGTGGTTTAGGAGGTGAAGGGGAGCAGCGTGGTTGAGACCGAGACTATCAGGTGGCTAAGTTTCCTTGTGGTGGTCTTGATTCTTCATCAAG................................................................................................GTGGCAAAGATAGTTTGGCTCTAAAAATAGATACGGTACTGGCCTTCTGTGATGAAATGTGCTTGAAGGACAGAGCTTCTATCCAAGAAGACGGCAATCCACATCACAAAGAGTTTGGCTTGATTCAACCAATGAGCGGAAGGAGATTGTCCAAAGCTGTACACACTCCATGATGTGCGTGCCAG...........................................................................................................................................................................................................GTGGATTTCATGCTGGAGTTACTGTAAATAGGGTTGGATAAAAAACATTTTTGCGAGAGTGATCTGCATTCCAGCCCCCTCTGAAGCACAGGAGTCAGCTGCATTTCAAATGATTACCCAATTACAGACTATGGCAGACCACACCCATTACATTTAATGATGGCAAAGAAACAGCAACACCAATATTTTTGAATCCTATTAATGGCTACCATACCATAGTACTGTATTAGTTTCATTACTTTCCAGAAGCATATATTATGTGTGTCTGTGAAACTGAATTTGTTGTCTTAGAATATTAGTTGGTTGCAACCCGTATCAGTGCTTTGAACGAAAATCAAGGCCAAATACATTCGGTGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379660" ref_strand="+" ref_description="SGN-E379660 [TUS-3-N18]">
      <seq>ttagttgcctctgtatcttcttttttttccttggtaaagatatttattaaaaatggtatcaagatggcacagaaaagactacatgacctaaactacaccactcgctccaaacatactacatattttcccctaataagtttaaaaaacccacttccatcacctccaacggaaagaggaattttatccatcaaagaaaaccaaaaatccagcaagtgtctagtaaatggagcaaagaaagagcatccccataacttaaccatcctatcaagagtacaactattagtacaaacatacaaattcttgatgcatttgtttctgactctgggtatctgcagcctccgtatctccttttagacccattttattccaagctgacgtgatgtgtagtggaagtttcctaacagattcaaccttttaggagattcatcatagctagatggttttcatgatgctgctctacctacctgtacatttcctttaatgcatgctttcaatgatgtcaaaactacagcaattgctccatcctaggtggggggggggggggggggggaccccaaaaaaggggccctttccctggctcccaattttttcttcttgggggggggggggggtttagaagggaaaggggaccaccggggtaaaaaccaaaatacaggggggaaaaattccctgggggggggctggattcttcacaaggggggaaaaaaaagttgggttcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="54218" stop="53056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53918" g_stop="53221" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="697" r_length="697" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53220" i_stop="53125" i_length="96">
            <donor d_prob="0.527" d_score="0.64"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53124" g_stop="53096" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="726" r_length="29" r_score="0.724"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E379660" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53918" e_stop="53221"/>
          <exon e_start="53124" e_stop="53096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTTGCCTCTGTATCTTCTTTTTTTTCCTTGGTAAAGATATTTATTAAAAATGGTATCAAGATGGCACAGAAAAGACTACATGACCTAAACTACACCACTCGCTCCAAACATACTACATATTTTCCCCTAATAAGTTTAAAAAACCCACTTCCATCACCTCCAACGGAAAGAGGAATTTTATCCATCAAAGAAAACCAAAAATCCAGCAAGTGTCTAGTAAATGGAGCAAAGAAAGAGCATCCCCATAACTTAACCATCCTATCAAGAGTACAACTATTAGTACAAACATACAAATTCTTGATGCATTTGTTTCTGACTCTGGGTATCTGCAGCCTCCGTATCTCCTTTTAGACCCATTTTATTCCAAGCTGACGTGATGTGTAGTGGAAGTTTCCTAACAGATTCAACCTTTTAGGAGATTCATCATAGCTAGATGGTTTTCATGATGCTGCTCTACCTACCTGTACATTTCCTTTAATGCATGCTTTCAATGATGTCAAAACTACAGCAATTGCTCCATCCTAGGTGGGGGGGGGGGGGGGGGGGGAGCTCTAAAATGGTTTCCTTTCTCTTGCTTCCTATTCTTTCTTCTTTGTGTTGGTGGGTGGTTTAGGAGGTGAAGGGGAGCAGCGTGGTTGAGACCGAGACTATCAGGTGGCTAAGTTTCCTTGTGGTGGTCTTGATTCTTCATCAAGGTTTGGTAGTTTCTTGGAGTCTTGAACTGCTGTATCATGAACTTGAACTAAATTACTGTAGGCCAATGTGCTCATGTTTATTTTAATGCCTTGTAGGTGGCAAAGATAGTTTGGCTCTAAAAATA</genome_strand>
        <mrna_strand>TTAGTTGCCTCTGTATCTTCTTTTTTTTCCTTGGTAAAGATATTTATTAAAAATGGTATCAAGATGGCACAGAAAAGACTACATGACCTAAACTACACCACTCGCTCCAAACATACTACATATTTTCCCCTAATAAGTTTAAAAAACCCACTTCCATCACCTCCAACGGAAAGAGGAATTTTATCCATCAAAGAAAACCAAAAATCCAGCAAGTGTCTAGTAAATGGAGCAAAGAAAGAGCATCCCCATAACTTAACCATCCTATCAAGAGTACAACTATTAGTACAAACATACAAATTCTTGATGCATTTGTTTCTGACTCTGGGTATCTGCAGCCTCCGTATCTCCTTTTAGACCCATTTTATTCCAAGCTGACGTGATGTGTAGTGGAAGTTTCCTAACAGATTCAACCTTTTAGGAGATTCATCATAGCTAGATGGTTTTCATGATGCTGCTCTACCTACCTGTACATTTCCTTTAATGCATGCTTTCAATGATGTCAAAACTACAGCAATTGCTCCATCCTAGGTGGGGGGGGGGGGGGGGGGGGACCCCAAAAAAGGGGCCCTTTCCCTGGCTCCCAATTTTTTCTTCTTGGGGGGGGGGGGGGGTTTAGAAGGGAAAGGGGACCACCGGGGTAAAAACC-AAAATACAGGGGGGAAAAATTCCCTGGGGGGGGGCTGGATTCTTCACAAGG................................................................................................GGGGAAAAAAAAGTTGGGTTCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209394" ref_strand="+" ref_description="SGN-E209394 [cLEC-53-O22]">
      <seq>ttaggcgcctatggatcttctttttttaacttggcaaagatatttattaaaaacggaatcaaaatggcacagaaaagactacatgacctaaactacaccactcgctccaaacatactacatattttcccctagtaagtttaaaaaacccacttccatcacctccaacggaaagaggaattttatccatcaaagaaaaccaaaaatccatcaagagtctagtaaagggagcaaagaaagagcatccccataacttaaccatcctatcaagagtacaactattagtacaaacatacaaatgcttgaagcatttgttactgactctgggtatctgcagcctccgtatctccttttagacccattttattccaagctgacgtgatgcgtactggaagtttcctaacaagatcaaccttttaggagactcatcatagctagatggctttcatgatgctgctctacctacctgaacatttcctttaatgcatgctttcaatgatgtcaaaactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="54218" stop="53110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53918" g_stop="53410" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E209394" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53918" e_stop="53410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTTGCCTCTGTATCTTCTTTTTTTTCCTTGGTAAAGATATTTATTAAAAATGGTATCAAGATGGCACAGAAAAGACTACATGACCTAAACTACACCACTCGCTCCAAACATACTACATATTTTCCCCTAATAAGTTTAAAAAACCCACTTCCATCACCTCCAACGGAAAGAGGAATTTTATCCATCAAAGAAAACCAAAAATCCAGCAAGTGTCTAGTAAATGGAGCAAAGAAAGAGCATCCCCATAACTTAACCATCCTATCAAGAGTACAACTATTAGTACAAACATACAAATTCTTGATGCATTTGTTTCTGACTCTGGGTATCTGCAGCCTCCGTATCTCCTTTTAGACCCATTTTATTCCAAGCTGACGTGATGTGTAGTGGAAGTTTCCTAACAGATTCAACCTTTTAGGAGATTCATCATAGCTAGATGGTTTTCATGATGCTGCTCTACCTACCTGTACATTTCCTTTAATGCATGCTTTCAATGATGTCAAAACTAC</genome_strand>
        <mrna_strand>TTAGGCGCCTATGGATCTTCTTTTTTTAACTTGGCAAAGATATTTATTAAAAACGGAATCAAAATGGCACAGAAAAGACTACATGACCTAAACTACACCACTCGCTCCAAACATACTACATATTTTCCCCTAGTAAGTTTAAAAAACCCACTTCCATCACCTCCAACGGAAAGAGGAATTTTATCCATCAAAGAAAACCAAAAATCCATCAAGAGTCTAGTAAAGGGAGCAAAGAAAGAGCATCCCCATAACTTAACCATCCTATCAAGAGTACAACTATTAGTACAAACATACAAATGCTTGAAGCATTTGTTACTGACTCTGGGTATCTGCAGCCTCCGTATCTCCTTTTAGACCCATTTTATTCCAAGCTGACGTGATGCGTACTGGAAGTTTCCTAACAAGATCAACCTTTTAGGAGACTCATCATAGCTAGATGGCTTTCATGATGCTGCTCTACCTACCTGAACATTTCCTTTAATGCATGCTTTCAATGATGTCAAAACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E411183" ref_strand="+" ref_description="SGN-E411183 [STM-14-C2]">
      <seq>aagaaatgacagagaagaggtgaagaagaagaatcaagatttgtttgcaatacactctgttttccctcttttttctaaccagtggacggttgtgttttaactgattttcttaatggtcattgtaatccagttaaagatggaaactttgtgattgttcaagtcaaaaaagtgcgagtcttgtgtctatatttattggggattgcttttttggaaacgtacatgtgaagcaaattagtgttttttttgttttttgttttttgtctttttggtttcttatctcatctaccaactgccactctccatctattactgcgtgaagatggaatcttctggatcttgtctttacttgtttttgctacttgggtgtttggatttgacgaatttatgatctgggttttgttttatatggctcaaaaggggttctttagtgagattagcagataatgactgttattcatgatatgatgatttcacaggtttggtcaaatgagttgttctcatatcaaaatgatgggtaccaatagcaatttttggaaatttggggtttgggtgttgtagttctgttcagttaggtgtgtatatttagtttagtaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="71197" stop="72386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71492" g_stop="72086" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E411183" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E411183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71492" e_stop="72086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAATGATAGAGAAGAGGTGAAGAAGAAGAAGAATCAAGATTTGTTTGCAATACACTCTGTTTTCCCT-GTTTTTCTAACCACTAGACGGTTGTGTTTTAACTGATTTTCTTAATGGTCATTGTAACCCAGTTAAAGATGGAAACTTTGTGATTGTTCAAGTCAAAAAAGTGCGAGTCTTGTGTCTATATTTATTGGGGATTGCTTTTTTGGAAACGTACATGTGAAGCAAATTACTG---TGTTT-TTTTTTGTTTTTTGTCTTTTTGGTTTCTTATCTCATCTAACAACTGCCACTCTCCATTTATTACTGCGTGAAGATGGAATCTTCTGGATCTTGTCTTTACTTGTTTTTGCTACTTGGGTGTTTGGATTTGACGAATTTATGATCTGGGTTTTGTTTTATATGACACAAAAGGGGGTTCTTTAGTGAGATTAGCAGATAATGACTGTTATTCATGATATGGTGATTTCACAGGTTTGGTCAAATGAGTTGTTCTCATATCAAAAGGATGGGTACCAATAGCAATTTTTGGTAATTTGGGGTTTGGGTGTTGTAGTTCTGTTCAGTTAGGTGTGTAAATTTAGTTTAGTAATG</genome_strand>
        <mrna_strand>AAGAAATGACAGAGAAGAGGT---GAAGAAGAAGAATCAAGATTTGTTTGCAATACACTCTGTTTTCCCTCTTTTTTCTAACCAGTGGACGGTTGTGTTTTAACTGATTTTCTTAATGGTCATTGTAATCCAGTTAAAGATGGAAACTTTGTGATTGTTCAAGTCAAAAAAGTGCGAGTCTTGTGTCTATATTTATTGGGGATTGCTTTTTTGGAAACGTACATGTGAAGCAAATTAGTGTTTTTTTTGTTTTTTGTTTTTTGTCTTTTTGGTTTCTTATCTCATCTACCAACTGCCACTCTCCATCTATTACTGCGTGAAGATGGAATCTTCTGGATCTTGTCTTTACTTGTTTTTGCTACTTGGGTGTTTGGATTTGACGAATTTATGATCTGGGTTTTGTTTTATATGGCTCAAAA-GGGGTTCTTTAGTGAGATTAGCAGATAATGACTGTTATTCATGATATGATGATTTCACAGGTTTGGTCAAATGAGTTGTTCTCATATCAAAATGATGGGTACCAATAGCAATTTTTGGAAATTTGGGGTTTGGGTGTTGTAGTTCTGTTCAGTTAGGTGTGTATATTTAGTTTAGTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468059" ref_strand="+" ref_description="SGN-E468059 [cSTB-2-K22]">
      <seq>aagaaatgacagagaagaggtgaagaagaagaatcaagatttgtttgcaatacactctgttttccctcttttttctaaccagtggacggttgtgttttaactgattttcttaatggtcattgtaatccagttaaagatggaaactttgtgattgttcaagtcaaaaaagtgcgagtcttgtgtctatatttattggggattgcttttttggaaacgtacatgtgaagcaaattagtgttttttttgttttttgttttttgtctttttggtttcttatctcatctaccaactgccactctccatctattactgcgtgaagatggaatcttctggatcttgtctttacttgtttttgctacttgggtgtttggatttgacgaatttatgatctgggttttgttttatatggctcaaaaggggttctttagtgagattagcagataatgactgttattcatgatatgatgatttcacaggtttggtcaaatgagttgttctcatatcaaaatgatgggtaccaatagcaatttttggaaatttggggtttgggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="71197" stop="72342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71492" g_stop="72042" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E468059" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E468059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71492" e_stop="72042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAATGATAGAGAAGAGGTGAAGAAGAAGAAGAATCAAGATTTGTTTGCAATACACTCTGTTTTCCCT-GTTTTTCTAACCACTAGACGGTTGTGTTTTAACTGATTTTCTTAATGGTCATTGTAACCCAGTTAAAGATGGAAACTTTGTGATTGTTCAAGTCAAAAAAGTGCGAGTCTTGTGTCTATATTTATTGGGGATTGCTTTTTTGGAAACGTACATGTGAAGCAAATTACTG---TGTTT-TTTTTTGTTTTTTGTCTTTTTGGTTTCTTATCTCATCTAACAACTGCCACTCTCCATTTATTACTGCGTGAAGATGGAATCTTCTGGATCTTGTCTTTACTTGTTTTTGCTACTTGGGTGTTTGGATTTGACGAATTTATGATCTGGGTTTTGTTTTATATGACACAAAAGGGGGTTCTTTAGTGAGATTAGCAGATAATGACTGTTATTCATGATATGGTGATTTCACAGGTTTGGTCAAATGAGTTGTTCTCATATCAAAAGGATGGGTACCAATAGCAATTTTTGGTAATTTGGGGTTTGGGTG</genome_strand>
        <mrna_strand>AAGAAATGACAGAGAAGAGGT---GAAGAAGAAGAATCAAGATTTGTTTGCAATACACTCTGTTTTCCCTCTTTTTTCTAACCAGTGGACGGTTGTGTTTTAACTGATTTTCTTAATGGTCATTGTAATCCAGTTAAAGATGGAAACTTTGTGATTGTTCAAGTCAAAAAAGTGCGAGTCTTGTGTCTATATTTATTGGGGATTGCTTTTTTGGAAACGTACATGTGAAGCAAATTAGTGTTTTTTTTGTTTTTTGTTTTTTGTCTTTTTGGTTTCTTATCTCATCTACCAACTGCCACTCTCCATCTATTACTGCGTGAAGATGGAATCTTCTGGATCTTGTCTTTACTTGTTTTTGCTACTTGGGTGTTTGGATTTGACGAATTTATGATCTGGGTTTTGTTTTATATGGCTCAAAA-GGGGTTCTTTAGTGAGATTAGCAGATAATGACTGTTATTCATGATATGATGATTTCACAGGTTTGGTCAAATGAGTTGTTCTCATATCAAAATGATGGGTACCAATAGCAATTTTTGGAAATTTGGGGTTTGGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E411185" ref_strand="+" ref_description="SGN-E411185 [STM-14-C4]">
      <seq>aagaaatgacagagaagaggtgaagaagaagaatcaagatttgtttgcaatacactctgttttccctcttttttctaaccagtggacggttgtgttttaactgattttcttaatggtcattgtaatccagttaaagatggaaactttgtgattgttcaagtcaaaaaagtgcgagtcttgtgtctatatttattggggattgcttttttggaaacgtacatgtgaagcaaattagtgttttttttgttttttgttttttgtctttttggtttcttatctcatctaccaactgccactctccatctattactgcgtgaagatggaatcttctggatcttgtctttacttgtttttgctacttgggtgtttggatttgacgaatttatgatctgggttttgttttatatggctcaaaaggggttctttagtgagattagcagataatgactgttattcatgatatgatgatttcacaggtttggtcaaatgagttgttctcatatcaaaatgatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="71197" stop="72305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71492" g_stop="72005" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E411185" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E411185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71492" e_stop="72005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAATGATAGAGAAGAGGTGAAGAAGAAGAAGAATCAAGATTTGTTTGCAATACACTCTGTTTTCCCT-GTTTTTCTAACCACTAGACGGTTGTGTTTTAACTGATTTTCTTAATGGTCATTGTAACCCAGTTAAAGATGGAAACTTTGTGATTGTTCAAGTCAAAAAAGTGCGAGTCTTGTGTCTATATTTATTGGGGATTGCTTTTTTGGAAACGTACATGTGAAGCAAATTACTG---TGTTT-TTTTTTGTTTTTTGTCTTTTTGGTTTCTTATCTCATCTAACAACTGCCACTCTCCATTTATTACTGCGTGAAGATGGAATCTTCTGGATCTTGTCTTTACTTGTTTTTGCTACTTGGGTGTTTGGATTTGACGAATTTATGATCTGGGTTTTGTTTTATATGACACAAAAGGGGGTTCTTTAGTGAGATTAGCAGATAATGACTGTTATTCATGATATGGTGATTTCACAGGTTTGGTCAAATGAGTTGTTCTCATATCAAAAGGATGGG</genome_strand>
        <mrna_strand>AAGAAATGACAGAGAAGAGGT---GAAGAAGAAGAATCAAGATTTGTTTGCAATACACTCTGTTTTCCCTCTTTTTTCTAACCAGTGGACGGTTGTGTTTTAACTGATTTTCTTAATGGTCATTGTAATCCAGTTAAAGATGGAAACTTTGTGATTGTTCAAGTCAAAAAAGTGCGAGTCTTGTGTCTATATTTATTGGGGATTGCTTTTTTGGAAACGTACATGTGAAGCAAATTAGTGTTTTTTTTGTTTTTTGTTTTTTGTCTTTTTGGTTTCTTATCTCATCTACCAACTGCCACTCTCCATCTATTACTGCGTGAAGATGGAATCTTCTGGATCTTGTCTTTACTTGTTTTTGCTACTTGGGTGTTTGGATTTGACGAATTTATGATCTGGGTTTTGTTTTATATGGCTCAAAA-GGGGTTCTTTAGTGAGATTAGCAGATAATGACTGTTATTCATGATATGATGATTTCACAGGTTTGGTCAAATGAGTTGTTCTCATATCAAAATGATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E591412" ref_strand="+" ref_description="SGN-E591412 [45123]">
      <seq>tgaaacgtttactgaggatggcttctccacagattatgagtcatcagttcctgtggatgaacctgaaaaggttgaaaaggttcacgcttgcaaaacattcagtgacgctgcttctacttctacttcatcagttgtaaccaaacagatagaactcccagctaagcctgtagttagagaagatgcaagttcaataattgagatgaagcggatattagatagtgcggatcattatgaagcactaggggtttctcggcataagaaaattgacactttactgttgaaaaaagaatatcgtaaaaaggcaatgcttgtgcacccggacaaaaacatgggaagtccacttgccagtgaatcatttaagaaacttcaatgtggatatgaggttctttctgatgctgtcaagaagcgagactatgatgagcaactcagaaaggaagaatctaagagtgtaatgcaaaaatcacctagcacgtccaaccaggaatcctccaactactgctcagaagagtcgaggcgtatccactgcacaaaatgtggcaactcacacatttggatctgcaccaacaggacaaaggtcaaggcaagatggtgccaggattgttgtcaatatcaccaaagccaaaagatgggggatggatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="74039" stop="76443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74338" g_stop="74647" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74648" i_stop="75008" i_length="361">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75009" g_stop="75089" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="382" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75090" i_stop="75214" i_length="125">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75215" g_stop="75313" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="481" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75314" i_stop="75894" i_length="581">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75895" g_stop="76008" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="595" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76009" i_stop="76101" i_length="93">
            <donor d_prob="0.201" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76102" g_stop="76143" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="640" r_length="45" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E591412" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E591412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74338" e_stop="74647"/>
          <exon e_start="75009" e_stop="75089"/>
          <exon e_start="75215" e_stop="75313"/>
          <exon e_start="75895" e_stop="76008"/>
          <exon e_start="76102" e_stop="76143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAACATTTACTGAGGATGACTTCTCCACAGATTATGAGTCATCAGTTCCTCTGGATGAACCTGAAAAGGTTGAAAAAGTTGAAAAGGTTCACGCTTGCAAAACATTCAGCGACGCTGCTTCTACTTCTACTTCATCAGTTGTAACCAAACAGATAGAACCCCCAGCTAAGCCAGTAGTTAGAGAAGATGCAAGTTCAATAATTGAGATGAAGCGGATATTAGATAGTGCGGATCATTATGAAGCACTAGGGGTTTCTCGGCATAAGAAAATTGACACTTTACTGTTGAAAAAAGAATATCGTAAAAAGGTGTGCCACTTTCTTATCATGCCTATGCATTATATATCATGTGACAGGCTTTAAAGCCAAGTGATGGGTTTGAGAGACATCTACCGGAGTTTCATTCATTTTCAATTTACCCTAACAAATTAGAACGTGTCAAATTGATGTTGATTACTCATCCATCTTTTTGATATCCTTACGTGTCAGATCAAATTGATGTTGATTACTCATCCGTCTTTTGATTAGTTTGATGGGTTTGAGTTAGGCGTCAAAGTGTCCATTTCTTTGACGCAAGATAACAAATTTCATGCCTGATCCGATGATATATTTACTTTCCGTCTAGACGAAGTTCAGATTGATGCTAATTTTACATACATGAAATGCGCAGGCAATGCTTGTGCACCCGGACAAAAACATGGGAAGTTCACTTGCCAGTGAATCATTTAAGAAACTTCAATGTGGATATGAGGTGATCACTATTTTAATAGTTAAATTATCTGTTATGCTGTTATAATACTATTGTTGGCTTGCTTCCTATTTGTTTGAGATGCAAACATGCTGCTATGGTTTTCTAATACTGTCACTTGCCTTTAGGTTCTTTCTGATGCTGTCAAGAAGCGAGACTATGATGAGCAACTCAGAAAGGAAGAATCTAAGAGTGTACTGCAAAAATCACCTAGCACGTCCAACCAGGTCTGTTCAAGTGTCTGACTGAACTTCATTTATCTCCAGTAAACCTGTCAGAATTCAACATCTTATCCTGCATACAAAATTATCCAAGCGGGAAAAGTTTCAATGAGAGCTAGTTGTATCTCTTTAACTGGGAAAGACTAGATTCAGTGTCTGCCCTGTCCTTCACTTGAACTGTCTTAGCCCTATTTCTTGCAATGATGACACCAAATTAAATTATGTAATACCAATAAGATCCATGTCAAAGCATGATAAGCTTTCAAGGTGTAACGACAATTTCGGGTGAGCATGCAGAAATTGTATGGTATCCTGGAATTTTCAGAAGAAAGAATTTCTTTTGGAATGAGAAGTTCAATGGCACAATCTAAGACCTGTTCAGCTTTATGATCTACGGGAAACTCATGCAAATAGTTATTGAATATTGATGGATGTAAAAAATAAAATAAAAATATCGGATGCCTTTCTTGCAAGCCACCAGTTCCATGTCAATTTCTTTGAGGTCATAAATAAGATGCCAAAGTTGATCTTCCGATCTTAAAAGGGAAGGCTTAATATTTACAAATGGCTTATCTGGTATGGTGCAGGAATCCTCCAACTACTGCTCAGAAGAGTCAAGGCGTATCCACTGCACAAAATGTGGCAACTCACACATTTGGATCTGCACCAATAGGACAAAGGTCAAGGCAAGATGGTGCCAGGTTGTGCAATCATTAAATTGTCTACTATGGTTGCTAACTTGCTATTCCTCTCTTTCACTTGTTCAAATTTTAATGAAAGCTGCTGGTGTACAGGATTGTTGTCAATATCACC-AAGCC-AAAGAT-GGGGATGGATGG</genome_strand>
        <mrna_strand>TGAAACGTTTACTGAGGATGGCTTCTCCACAGATTATGAGTCATCAGTTCCTGTGGATGAACCTGAAAA----G-----GTTGAAAAGGTTCACGCTTGCAAAACATTCAGTGACGCTGCTTCTACTTCTACTTCATCAGTTGTAACCAAACAGATAGAACTCCCAGCTAAGCCTGTAGTTAGAGAAGATGCAAGTTCAATAATTGAGATGAAGCGGATATTAGATAGTGCGGATCATTATGAAGCACTAGGGGTTTCTCGGCATAAGAAAATTGACACTTTACTGTTGAAAAAAGAATATCGTAAAAAG.........................................................................................................................................................................................................................................................................................................................................................................GCAATGCTTGTGCACCCGGACAAAAACATGGGAAGTCCACTTGCCAGTGAATCATTTAAGAAACTTCAATGTGGATATGAG.............................................................................................................................GTTCTTTCTGATGCTGTCAAGAAGCGAGACTATGATGAGCAACTCAGAAAGGAAGAATCTAAGAGTGTAATGCAAAAATCACCTAGCACGTCCAACCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCCTCCAACTACTGCTCAGAAGAGTCGAGGCGTATCCACTGCACAAAATGTGGCAACTCACACATTTGGATCTGCACCAACAGGACAAAGGTCAAGGCAAGATGGTGCCAG.............................................................................................GATTGTTGTCAATATCACCAAAGCCAAAAGATGGGGGATGGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E408036" ref_strand="+" ref_description="SGN-E408036 [PPI-9-B2]">
      <seq>gatgacttctccacagattatgagtcatcagttcctgtggatgaacctgaaaaggttgaaaaggttgaaaaggttcacgcttgcaaaacattctgcgacgctgcatctacttctacttcatcagttgtaaccaaacagatagaacccccagctaagccagtagttagagaagatgcaagttcaataattgagatgaagcggatattagatagtgcggatcattatgaagcactaggggtttctcggcataagaaaattgacactttactgttgaaaaaagaatatcgtaaaaaggcaatgcttgtgcacccggacaaaaacatgggaagtccacttgccagtgaatcatttaagaaacttcaatgtggatatgaggttctttctgatgctgtcaagaagcgagactatgatgagcaactcagaaaggaagaatctaagagtgtaatgcaaaaatcacctagcacgtccaaccaggaatcctccaactactgctcagaagagtcgaggcgtatccactgcacaaaatgtggcaactcacacatttggatctgcaccaataggacaaaggtcaaggcaagatggtgccaggattgttgtcaatatcaccaagccaaagatggggatggatgggtagagtacaaaggatcattggtttttaatagaccacanaaggcggagatacctcgtgctttcgtttgtgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="74054" stop="77381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74354" g_stop="74647" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74648" i_stop="75008" i_length="361">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75009" g_stop="75089" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="375" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75090" i_stop="75214" i_length="125">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75215" g_stop="75313" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="474" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75314" i_stop="75894" i_length="581">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75895" g_stop="76008" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="588" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76009" i_stop="76101" i_length="93">
            <donor d_prob="0.201" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76102" g_stop="76185" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="672" r_length="84" r_score="0.952"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76186" i_stop="77050" i_length="865">
            <donor d_prob="0.983" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77051" g_stop="77081" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="673" r_stop="703" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E408036" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E408036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74354" e_stop="74647"/>
          <exon e_start="75009" e_stop="75089"/>
          <exon e_start="75215" e_stop="75313"/>
          <exon e_start="75895" e_stop="76008"/>
          <exon e_start="76102" e_stop="76185"/>
          <exon e_start="77051" e_stop="77081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGACTTCTCCACAGATTATGAGTCATCAGTTCCTCTGGATGAACCTGAAAAGGTTGAAAAAGTTGAAAAGGTTCACGCTTGCAAAACATTCAGCGACGCTGCTTCTACTTCTACTTCATCAGTTGTAACCAAACAGATAGAACCCCCAGCTAAGCCAGTAGTTAGAGAAGATGCAAGTTCAATAATTGAGATGAAGCGGATATTAGATAGTGCGGATCATTATGAAGCACTAGGGGTTTCTCGGCATAAGAAAATTGACACTTTACTGTTGAAAAAAGAATATCGTAAAAAGGTGTGCCACTTTCTTATCATGCCTATGCATTATATATCATGTGACAGGCTTTAAAGCCAAGTGATGGGTTTGAGAGACATCTACCGGAGTTTCATTCATTTTCAATTTACCCTAACAAATTAGAACGTGTCAAATTGATGTTGATTACTCATCCATCTTTTTGATATCCTTACGTGTCAGATCAAATTGATGTTGATTACTCATCCGTCTTTTGATTAGTTTGATGGGTTTGAGTTAGGCGTCAAAGTGTCCATTTCTTTGACGCAAGATAACAAATTTCATGCCTGATCCGATGATATATTTACTTTCCGTCTAGACGAAGTTCAGATTGATGCTAATTTTACATACATGAAATGCGCAGGCAATGCTTGTGCACCCGGACAAAAACATGGGAAGTTCACTTGCCAGTGAATCATTTAAGAAACTTCAATGTGGATATGAGGTGATCACTATTTTAATAGTTAAATTATCTGTTATGCTGTTATAATACTATTGTTGGCTTGCTTCCTATTTGTTTGAGATGCAAACATGCTGCTATGGTTTTCTAATACTGTCACTTGCCTTTAGGTTCTTTCTGATGCTGTCAAGAAGCGAGACTATGATGAGCAACTCAGAAAGGAAGAATCTAAGAGTGTACTGCAAAAATCACCTAGCACGTCCAACCAGGTCTGTTCAAGTGTCTGACTGAACTTCATTTATCTCCAGTAAACCTGTCAGAATTCAACATCTTATCCTGCATACAAAATTATCCAAGCGGGAAAAGTTTCAATGAGAGCTAGTTGTATCTCTTTAACTGGGAAAGACTAGATTCAGTGTCTGCCCTGTCCTTCACTTGAACTGTCTTAGCCCTATTTCTTGCAATGATGACACCAAATTAAATTATGTAATACCAATAAGATCCATGTCAAAGCATGATAAGCTTTCAAGGTGTAACGACAATTTCGGGTGAGCATGCAGAAATTGTATGGTATCCTGGAATTTTCAGAAGAAAGAATTTCTTTTGGAATGAGAAGTTCAATGGCACAATCTAAGACCTGTTCAGCTTTATGATCTACGGGAAACTCATGCAAATAGTTATTGAATATTGATGGATGTAAAAAATAAAATAAAAATATCGGATGCCTTTCTTGCAAGCCACCAGTTCCATGTCAATTTCTTTGAGGTCATAAATAAGATGCCAAAGTTGATCTTCCGATCTTAAAAGGGAAGGCTTAATATTTACAAATGGCTTATCTGGTATGGTGCAGGAATCCTCCAACTACTGCTCAGAAGAGTCAAGGCGTATCCACTGCACAAAATGTGGCAACTCACACATTTGGATCTGCACCAATAGGACAAAGGTCAAGGCAAGATGGTGCCAGGTTGTGCAATCATTAAATTGTCTACTATGGTTGCTAACTTGCTATTCCTCTCTTTCACTTGTTCAAATTTTAATGAAAGCTGCTGGTGTACAGGATTGTTGTCAATATCACCAAGCCAAAGATGGGGATGGATGGGTAGAATACAAAGGATCATTGGTTTTCAATCGACCACAAAAGGTATCTAAATTTCATAGTAATTTATATTATCTTGAAAGATTCATGCGAAGTAGTGTCCAATTTGGTTCATTTACCAGTTCGATAGATAAAAGTGTCATTTAGGAACAGATTATCATTTCCTGAAAATCTTGGAATTAGAGTATTTTTTATTCTGGGTTCTTAAAGCAAGACAAACATTTTAATGCCATGTTATACTTGTGAGTTGGGTCACAAATTCGAGTCCTGCGCCATGCAAACTAAGTTCGGCATTTAAGTGGGAAGGGCAGAGGATTGGGTCCATTATCTCTGAACTTTGAAAGTGTTGCCGTCAAGTTTTGGCCCCAAACATATATTATAGTCACAAAAAAAGCTGCACGTTATACTAGATCATTACTGTCAAGTTCGATTTTCAATAGATATTGTAGGAAGCAATTTATCAAAAAATATAAATACTTAGATCAATTCAAAATATTTGGACTCTTGTACTTAATGGTTTACCTTGGCTGCATTACCAAGCTTCAAATTGTTGATGGTGCAATGAAGCAAGTCCATCATCTGTCTCTAGGATTTTCCTCTGGTTTGGTCAAATCTTAACATGGTTTATGTGATCAAGTTAATGGTATATAGGGTGGTTCTCCACTTTTTAACTGTATGAGTTACTGTATTTATGTGCTTAGAGGGTACAATCAAATATTAATACTCTGGCCAATTAGTGTGGCACTACTAGTCAAATGTCAACTTCAAAGAGTTGAAATCAGCATCTAGCTGCACATGAACAGTGGTTTCCCTTCCTTTCAGCTGTAGTTTAGTTGATCATGCTTTCTCTTGATGTGCGTCCATAAGATGCTCATTCTTCATAATGTTTGTAAATATACTTGTCATTCAGGCGGAGATACCTCGTGCTTTCGTTTGTGCTG</genome_strand>
        <mrna_strand>GATGACTTCTCCACAGATTATGAGTCATCAGTTCCTGTGGATGAACCTGAAAAGGTTGAAAAGGTTGAAAAGGTTCACGCTTGCAAAACATTCTGCGACGCTGCATCTACTTCTACTTCATCAGTTGTAACCAAACAGATAGAACCCCCAGCTAAGCCAGTAGTTAGAGAAGATGCAAGTTCAATAATTGAGATGAAGCGGATATTAGATAGTGCGGATCATTATGAAGCACTAGGGGTTTCTCGGCATAAGAAAATTGACACTTTACTGTTGAAAAAAGAATATCGTAAAAAG.........................................................................................................................................................................................................................................................................................................................................................................GCAATGCTTGTGCACCCGGACAAAAACATGGGAAGTCCACTTGCCAGTGAATCATTTAAGAAACTTCAATGTGGATATGAG.............................................................................................................................GTTCTTTCTGATGCTGTCAAGAAGCGAGACTATGATGAGCAACTCAGAAAGGAAGAATCTAAGAGTGTAATGCAAAAATCACCTAGCACGTCCAACCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCCTCCAACTACTGCTCAGAAGAGTCGAGGCGTATCCACTGCACAAAATGTGGCAACTCACACATTTGGATCTGCACCAATAGGACAAAGGTCAAGGCAAGATGGTGCCAG.............................................................................................GATTGTTGTCAATATCACCAAGCCAAAGATGGGGATGGATGGGTAGAGTACAAAGGATCATTGGTTTTTAATAGACCACANAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGATACCTCGTGCTTTCGTTTGTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E421525" ref_strand="+" ref_description="SGN-E421525 [STM-33-E1]">
      <seq>gatgacttctccacagattatgagtcatcagttcctgtggatgaacctgaaaaggttgaaaaggttgaaaaggttcacgcttgcaaaacattctgcgacgctgcatctacttctacttcatcagttgtaaccaaacagatagaacccccagctaagccagtagttagagaagatgcaagttcaataattgagatgaagcggatattagatagtgcggatcattatgaagcactaggggtttctcggcataagaaaattgacactttactgttgaaaaaagaatatcgtaaaaaggcaatgcttgtgcacccggacaaaaacatgggaagtccacttgccagtgaatcatttaagaaacttcaatgtggatatgaggttctttctgatgctgtcaagaagcgagactatgatgagcaactcagaaaggaagaatctaagagtgtaatgcaaaaatcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="74054" stop="75597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74354" g_stop="74647" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74648" i_stop="75008" i_length="361">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75009" g_stop="75089" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="375" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75090" i_stop="75214" i_length="125">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75215" g_stop="75297" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="458" r_length="83" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E421525" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E421525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74354" e_stop="74647"/>
          <exon e_start="75009" e_stop="75089"/>
          <exon e_start="75215" e_stop="75297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGACTTCTCCACAGATTATGAGTCATCAGTTCCTCTGGATGAACCTGAAAAGGTTGAAAAAGTTGAAAAGGTTCACGCTTGCAAAACATTCAGCGACGCTGCTTCTACTTCTACTTCATCAGTTGTAACCAAACAGATAGAACCCCCAGCTAAGCCAGTAGTTAGAGAAGATGCAAGTTCAATAATTGAGATGAAGCGGATATTAGATAGTGCGGATCATTATGAAGCACTAGGGGTTTCTCGGCATAAGAAAATTGACACTTTACTGTTGAAAAAAGAATATCGTAAAAAGGTGTGCCACTTTCTTATCATGCCTATGCATTATATATCATGTGACAGGCTTTAAAGCCAAGTGATGGGTTTGAGAGACATCTACCGGAGTTTCATTCATTTTCAATTTACCCTAACAAATTAGAACGTGTCAAATTGATGTTGATTACTCATCCATCTTTTTGATATCCTTACGTGTCAGATCAAATTGATGTTGATTACTCATCCGTCTTTTGATTAGTTTGATGGGTTTGAGTTAGGCGTCAAAGTGTCCATTTCTTTGACGCAAGATAACAAATTTCATGCCTGATCCGATGATATATTTACTTTCCGTCTAGACGAAGTTCAGATTGATGCTAATTTTACATACATGAAATGCGCAGGCAATGCTTGTGCACCCGGACAAAAACATGGGAAGTTCACTTGCCAGTGAATCATTTAAGAAACTTCAATGTGGATATGAGGTGATCACTATTTTAATAGTTAAATTATCTGTTATGCTGTTATAATACTATTGTTGGCTTGCTTCCTATTTGTTTGAGATGCAAACATGCTGCTATGGTTTTCTAATACTGTCACTTGCCTTTAGGTTCTTTCTGATGCTGTCAAGAAGCGAGACTATGATGAGCAACTCAGAAAGGAAGAATCTAAGAGTGTACTGCAAAAATCACC</genome_strand>
        <mrna_strand>GATGACTTCTCCACAGATTATGAGTCATCAGTTCCTGTGGATGAACCTGAAAAGGTTGAAAAGGTTGAAAAGGTTCACGCTTGCAAAACATTCTGCGACGCTGCATCTACTTCTACTTCATCAGTTGTAACCAAACAGATAGAACCCCCAGCTAAGCCAGTAGTTAGAGAAGATGCAAGTTCAATAATTGAGATGAAGCGGATATTAGATAGTGCGGATCATTATGAAGCACTAGGGGTTTCTCGGCATAAGAAAATTGACACTTTACTGTTGAAAAAAGAATATCGTAAAAAG.........................................................................................................................................................................................................................................................................................................................................................................GCAATGCTTGTGCACCCGGACAAAAACATGGGAAGTCCACTTGCCAGTGAATCATTTAAGAAACTTCAATGTGGATATGAG.............................................................................................................................GTTCTTTCTGATGCTGTCAAGAAGCGAGACTATGATGAGCAACTCAGAAAGGAAGAATCTAAGAGTGTAATGCAAAAATCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E584676" ref_strand="+" ref_description="SGN-E584676 [10503]">
      <seq>aaaacattcagtgacgctgcttctacttctacttcatcagttgtaaccaaacagatagaactcccagctaagcctgtagttagagaagatgcaagttcaataattgagatgaagcggatattagatagtgcggatcattatgaagcactaggggtttctcggcataagaaaattgacactttactgttgaaaaaagaatatcgtaaaaaggcaatgcttgtgcacccggacaaaaacatgggaagtccacttgccagtgaatcatttaagaaacttcaatgtggatatgaggttctttctgatgctgtcaagaagcgagactatgatgagcaactcagaaaggaagaatctaagagtgtaatgcaaaaatcacctagcacgtccaaccaggaatcctccaactactgctcagaagagtcgaggcgtatccactgcacaaaatgtggcaactcacacatttggatctgcaccaataggacaaaggtcaaggcaagatggtgccaggattgttgtcaatatcaccaagccaaagatggggatggatgggtagagtacaaaggatcattggtttttaatagaccacaaaaggcggagataccctcgtgctttcgtttgtgctgaaggcaagatatttgatgtgtcagaatgggccatatgtcagggcatggttgtagaccaataccatagacgagttccatgtgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="74138" stop="77435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74438" g_stop="74647" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74648" i_stop="75008" i_length="361">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75009" g_stop="75089" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="291" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75090" i_stop="75214" i_length="125">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75215" g_stop="75313" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="390" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75314" i_stop="75894" i_length="581">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75895" g_stop="76008" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="504" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76009" i_stop="76101" i_length="93">
            <donor d_prob="0.201" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76102" g_stop="76185" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="588" r_length="84" r_score="0.964"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76186" i_stop="77050" i_length="865">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77051" g_stop="77122" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="661" r_length="73" r_score="0.958"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="77123" i_stop="77202" i_length="80">
            <donor d_prob="0.745" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="77203" g_stop="77250" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="704" r_length="43" r_score="0.896"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E584676" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E584676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74438" e_stop="74647"/>
          <exon e_start="75009" e_stop="75089"/>
          <exon e_start="75215" e_stop="75313"/>
          <exon e_start="75895" e_stop="76008"/>
          <exon e_start="76102" e_stop="76185"/>
          <exon e_start="77051" e_stop="77122"/>
          <exon e_start="77203" e_stop="77250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACATTCAGCGACGCTGCTTCTACTTCTACTTCATCAGTTGTAACCAAACAGATAGAACCCCCAGCTAAGCCAGTAGTTAGAGAAGATGCAAGTTCAATAATTGAGATGAAGCGGATATTAGATAGTGCGGATCATTATGAAGCACTAGGGGTTTCTCGGCATAAGAAAATTGACACTTTACTGTTGAAAAAAGAATATCGTAAAAAGGTGTGCCACTTTCTTATCATGCCTATGCATTATATATCATGTGACAGGCTTTAAAGCCAAGTGATGGGTTTGAGAGACATCTACCGGAGTTTCATTCATTTTCAATTTACCCTAACAAATTAGAACGTGTCAAATTGATGTTGATTACTCATCCATCTTTTTGATATCCTTACGTGTCAGATCAAATTGATGTTGATTACTCATCCGTCTTTTGATTAGTTTGATGGGTTTGAGTTAGGCGTCAAAGTGTCCATTTCTTTGACGCAAGATAACAAATTTCATGCCTGATCCGATGATATATTTACTTTCCGTCTAGACGAAGTTCAGATTGATGCTAATTTTACATACATGAAATGCGCAGGCAATGCTTGTGCACCCGGACAAAAACATGGGAAGTTCACTTGCCAGTGAATCATTTAAGAAACTTCAATGTGGATATGAGGTGATCACTATTTTAATAGTTAAATTATCTGTTATGCTGTTATAATACTATTGTTGGCTTGCTTCCTATTTGTTTGAGATGCAAACATGCTGCTATGGTTTTCTAATACTGTCACTTGCCTTTAGGTTCTTTCTGATGCTGTCAAGAAGCGAGACTATGATGAGCAACTCAGAAAGGAAGAATCTAAGAGTGTACTGCAAAAATCACCTAGCACGTCCAACCAGGTCTGTTCAAGTGTCTGACTGAACTTCATTTATCTCCAGTAAACCTGTCAGAATTCAACATCTTATCCTGCATACAAAATTATCCAAGCGGGAAAAGTTTCAATGAGAGCTAGTTGTATCTCTTTAACTGGGAAAGACTAGATTCAGTGTCTGCCCTGTCCTTCACTTGAACTGTCTTAGCCCTATTTCTTGCAATGATGACACCAAATTAAATTATGTAATACCAATAAGATCCATGTCAAAGCATGATAAGCTTTCAAGGTGTAACGACAATTTCGGGTGAGCATGCAGAAATTGTATGGTATCCTGGAATTTTCAGAAGAAAGAATTTCTTTTGGAATGAGAAGTTCAATGGCACAATCTAAGACCTGTTCAGCTTTATGATCTACGGGAAACTCATGCAAATAGTTATTGAATATTGATGGATGTAAAAAATAAAATAAAAATATCGGATGCCTTTCTTGCAAGCCACCAGTTCCATGTCAATTTCTTTGAGGTCATAAATAAGATGCCAAAGTTGATCTTCCGATCTTAAAAGGGAAGGCTTAATATTTACAAATGGCTTATCTGGTATGGTGCAGGAATCCTCCAACTACTGCTCAGAAGAGTCAAGGCGTATCCACTGCACAAAATGTGGCAACTCACACATTTGGATCTGCACCAATAGGACAAAGGTCAAGGCAAGATGGTGCCAGGTTGTGCAATCATTAAATTGTCTACTATGGTTGCTAACTTGCTATTCCTCTCTTTCACTTGTTCAAATTTTAATGAAAGCTGCTGGTGTACAGGATTGTTGTCAATATCACCAAGCCAAAGATGGGGATGGATGGGTAGAATACAAAGGATCATTGGTTTTCAATCGACCACAAAAGGTATCTAAATTTCATAGTAATTTATATTATCTTGAAAGATTCATGCGAAGTAGTGTCCAATTTGGTTCATTTACCAGTTCGATAGATAAAAGTGTCATTTAGGAACAGATTATCATTTCCTGAAAATCTTGGAATTAGAGTATTTTTTATTCTGGGTTCTTAAAGCAAGACAAACATTTTAATGCCATGTTATACTTGTGAGTTGGGTCACAAATTCGAGTCCTGCGCCATGCAAACTAAGTTCGGCATTTAAGTGGGAAGGGCAGAGGATTGGGTCCATTATCTCTGAACTTTGAAAGTGTTGCCGTCAAGTTTTGGCCCCAAACATATATTATAGTCACAAAAAAAGCTGCACGTTATACTAGATCATTACTGTCAAGTTCGATTTTCAATAGATATTGTAGGAAGCAATTTATCAAAAAATATAAATACTTAGATCAATTCAAAATATTTGGACTCTTGTACTTAATGGTTTACCTTGGCTGCATTACCAAGCTTCAAATTGTTGATGGTGCAATGAAGCAAGTCCATCATCTGTCTCTAGGATTTTCCTCTGGTTTGGTCAAATCTTAACATGGTTTATGTGATCAAGTTAATGGTATATAGGGTGGTTCTCCACTTTTTAACTGTATGAGTTACTGTATTTATGTGCTTAGAGGGTACAATCAAATATTAATACTCTGGCCAATTAGTGTGGCACTACTAGTCAAATGTCAACTTCAAAGAGTTGAAATCAGCATCTAGCTGCACATGAACAGTGGTTTCCCTTCCTTTCAGCTGTAGTTTAGTTGATCATGCTTTCTCTTGATGTGCGTCCATAAGATGCTCATTCTTCATAATGTTTGTAAATATACTTGTCATTCAGGCGGAGATA-CCTCGTGCTTTCGTTTGTGCTGAAGGCAAGATATTTGATGTGTCGGAATGGGCCATATGTCAGGTCAGTATTCTGTCATTATGAAAAAGATGGAAATATGGCCTTTGCTGCTAGTTTTTGTATTACGAATCTCCTCTGTGCAGGGCATGGCTTGTAGACCAAATACACATAGACCGAGTTTCCATGTGAAC</genome_strand>
        <mrna_strand>AAAACATTCAGTGACGCTGCTTCTACTTCTACTTCATCAGTTGTAACCAAACAGATAGAACTCCCAGCTAAGCCTGTAGTTAGAGAAGATGCAAGTTCAATAATTGAGATGAAGCGGATATTAGATAGTGCGGATCATTATGAAGCACTAGGGGTTTCTCGGCATAAGAAAATTGACACTTTACTGTTGAAAAAAGAATATCGTAAAAAG.........................................................................................................................................................................................................................................................................................................................................................................GCAATGCTTGTGCACCCGGACAAAAACATGGGAAGTCCACTTGCCAGTGAATCATTTAAGAAACTTCAATGTGGATATGAG.............................................................................................................................GTTCTTTCTGATGCTGTCAAGAAGCGAGACTATGATGAGCAACTCAGAAAGGAAGAATCTAAGAGTGTAATGCAAAAATCACCTAGCACGTCCAACCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCCTCCAACTACTGCTCAGAAGAGTCGAGGCGTATCCACTGCACAAAATGTGGCAACTCACACATTTGGATCTGCACCAATAGGACAAAGGTCAAGGCAAGATGGTGCCAG.............................................................................................GATTGTTGTCAATATCACCAAGCCAAAGATGGGGATGGATGGGTAGAGTACAAAGGATCATTGGTTTTTAATAGACCACAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGATACCCTCGTGCTTTCGTTTGTGCTGAAGGCAAGATATTTGATGTGTCAGAATGGGCCATATGTCAG................................................................................GGCATGG-TTGTAGACC-AATAC-CATAGA-CGAG-TTCCATGTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E583193" ref_strand="+" ref_description="SGN-E583193 [9014]">
      <seq>aaaacattcagtgacgctgcttctacttctacttcatcagttgtaaccaaacagatagaactcccagctaagcctgtagttagagaagatgcaagttcaataattgagatgaagcggatattagatagtgcggatcattatgaagcactaggggtttctcggcataagaaaattgacactttactgttgaaaacagaatatcgtaaaaaggcaatgcttgtgcacccggacaaaaacatgggaagtccacttgccagtgaatcatttaagaaacttcaatgtggatatgaggttctttctgatgctgtcaagaagcgagactatgatgagcaactcagaaaggaagaatctaagagttgtaatgcaaaaatcacctagcacgtccaagcaggaatctccaactactgctcagaagagtcgaggcgtattcactgcacaaaatgtggcaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="74138" stop="76256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74438" g_stop="74647" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74648" i_stop="75008" i_length="361">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75009" g_stop="75089" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="291" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75090" i_stop="75214" i_length="125">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75215" g_stop="75313" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="391" r_length="100" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75314" i_stop="75894" i_length="581">
            <donor d_prob="0.952" d_score="0.92"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75895" g_stop="75956" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="452" r_length="61" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E583193" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E583193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74438" e_stop="74647"/>
          <exon e_start="75009" e_stop="75089"/>
          <exon e_start="75215" e_stop="75313"/>
          <exon e_start="75895" e_stop="75956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACATTCAGCGACGCTGCTTCTACTTCTACTTCATCAGTTGTAACCAAACAGATAGAACCCCCAGCTAAGCCAGTAGTTAGAGAAGATGCAAGTTCAATAATTGAGATGAAGCGGATATTAGATAGTGCGGATCATTATGAAGCACTAGGGGTTTCTCGGCATAAGAAAATTGACACTTTACTGTTGAAAAAAGAATATCGTAAAAAGGTGTGCCACTTTCTTATCATGCCTATGCATTATATATCATGTGACAGGCTTTAAAGCCAAGTGATGGGTTTGAGAGACATCTACCGGAGTTTCATTCATTTTCAATTTACCCTAACAAATTAGAACGTGTCAAATTGATGTTGATTACTCATCCATCTTTTTGATATCCTTACGTGTCAGATCAAATTGATGTTGATTACTCATCCGTCTTTTGATTAGTTTGATGGGTTTGAGTTAGGCGTCAAAGTGTCCATTTCTTTGACGCAAGATAACAAATTTCATGCCTGATCCGATGATATATTTACTTTCCGTCTAGACGAAGTTCAGATTGATGCTAATTTTACATACATGAAATGCGCAGGCAATGCTTGTGCACCCGGACAAAAACATGGGAAGTTCACTTGCCAGTGAATCATTTAAGAAACTTCAATGTGGATATGAGGTGATCACTATTTTAATAGTTAAATTATCTGTTATGCTGTTATAATACTATTGTTGGCTTGCTTCCTATTTGTTTGAGATGCAAACATGCTGCTATGGTTTTCTAATACTGTCACTTGCCTTTAGGTTCTTTCTGATGCTGTCAAGAAGCGAGACTATGATGAGCAACTCAGAAAGGAAGAATCTAAGAG-TGTACTGCAAAAATCACCTAGCACGTCCAACCAGGTCTGTTCAAGTGTCTGACTGAACTTCATTTATCTCCAGTAAACCTGTCAGAATTCAACATCTTATCCTGCATACAAAATTATCCAAGCGGGAAAAGTTTCAATGAGAGCTAGTTGTATCTCTTTAACTGGGAAAGACTAGATTCAGTGTCTGCCCTGTCCTTCACTTGAACTGTCTTAGCCCTATTTCTTGCAATGATGACACCAAATTAAATTATGTAATACCAATAAGATCCATGTCAAAGCATGATAAGCTTTCAAGGTGTAACGACAATTTCGGGTGAGCATGCAGAAATTGTATGGTATCCTGGAATTTTCAGAAGAAAGAATTTCTTTTGGAATGAGAAGTTCAATGGCACAATCTAAGACCTGTTCAGCTTTATGATCTACGGGAAACTCATGCAAATAGTTATTGAATATTGATGGATGTAAAAAATAAAATAAAAATATCGGATGCCTTTCTTGCAAGCCACCAGTTCCATGTCAATTTCTTTGAGGTCATAAATAAGATGCCAAAGTTGATCTTCCGATCTTAAAAGGGAAGGCTTAATATTTACAAATGGCTTATCTGGTATGGTGCAGGAATCCTCCAACTACTGCTCAGAAGAGTCAAGGCGTATCCACTGCACAAAATGTGGCAACTC</genome_strand>
        <mrna_strand>AAAACATTCAGTGACGCTGCTTCTACTTCTACTTCATCAGTTGTAACCAAACAGATAGAACTCCCAGCTAAGCCTGTAGTTAGAGAAGATGCAAGTTCAATAATTGAGATGAAGCGGATATTAGATAGTGCGGATCATTATGAAGCACTAGGGGTTTCTCGGCATAAGAAAATTGACACTTTACTGTTGAAAACAGAATATCGTAAAAAG.........................................................................................................................................................................................................................................................................................................................................................................GCAATGCTTGTGCACCCGGACAAAAACATGGGAAGTCCACTTGCCAGTGAATCATTTAAGAAACTTCAATGTGGATATGAG.............................................................................................................................GTTCTTTCTGATGCTGTCAAGAAGCGAGACTATGATGAGCAACTCAGAAAGGAAGAATCTAAGAGTTGTAATGCAAAAATCACCTAGCACGTCCAAGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAT-CTCCAACTACTGCTCAGAAGAGTCGAGGCGTATTCACTGCACAAAATGTGGCAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E485373" ref_strand="+" ref_description="SGN-E485373 [cSTE-17-P9]">
      <seq>ctcgtgctttcgtttgtgctgaaggcaagatatttgatgtgtcagaatgggccatatgtcagggcatggcttgtagacccaatacccatagaccgagtttccatgtgaacatggttggattagagaaatcatcccagagatccaattcaagtaggtacccgtgggattttgatgctgagatgacagatgaagatgaagaatttgagctgtggctccagcaagctctagcatctggacttttttgtgagacgccaaagcggagaaaaacttggagtcctttcaagttgaatcagatgaaaggaaagaagcaatggagaaggtcttcatgagttacatgcacatcataattggttacgatgctcagatgccatttttgtgatgattcaacatccactgccccctaaaatcaggacaaaatgaaaaacgaggataaaaagacatgatgtgatatcttaaggtttcatatgcatcaacatggagatgaccaagcttctcatcaggggagagctcatctgttggcttggctaaacaagtataaatgtgctggttagctgattcatttgtatatatcatcctaattatccggcttgcgtacacaccacccctttcagactatgtgggattacactagatatgttgtatcctaattatccggcagcatttatctattgcaatgctcagttttgagctagatcatttgaatttgatangangaacaaaactgagcaaatctttgtacatctgatgatcctgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="76761" stop="78193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77061" g_stop="77122" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77123" i_stop="77202" i_length="80">
            <donor d_prob="0.745" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77203" g_stop="77893" g_length="691"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="755" r_length="693" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E485373" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E485373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77061" e_stop="77122"/>
          <exon e_start="77203" e_stop="77893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGTGCTTTCGTTTGTGCTGAAGGCAAGATATTTGATGTGTCGGAATGGGCCATATGTCAGGTCAGTATTCTGTCATTATGAAAAAGATGGAAATATGGCCTTTGCTGCTAGTTTTTGTATTACGAATCTCCTCTGTGCAGGGCATGGCTTGTAGACCAAATACACATAGACCGAGTTTCCATGTGAACATGGTTGGATTAGAGAAATCATCCCAGAGATCCAATTCAAGTAGGTACCCCTGGGATTTTGATGCTGAGATGACAGATGAAGATGAAGAATTCGAGCTGTGGCTCCAGCAAGCTCTAGCATCTGGACTTTTTTGTGAGACGCCAAAGCGGAGAAAAACTTGGAGTCCTTTCAAGTTGAATCAGATGAAAGGAAAGAAGCAATGGAGAAGGTCTTCATGAGTTACATG--CATCATAATCGGTTACGATGCTCAGATGCCATTTTTGTGATGATTCAACATCCACTGCCCCCTAAAATCAGGACAAAATGAAAAACGAGGATAAAAAGACATGATGTGATATCTTAAGGTTTCATATGCATCAACATGGAGATGACCAAACTTCTCATCAGGGGAGAGCTCATCTGTTGGTTTGGCTAAACAAGTATAAATGTGCTGGTTAGCTGATCCATTTGTATATATCATCCTAATTATCCGGCTTGCTTACA-ACCACCCTTTCCAGACTATGTGGGATTACACTAAGATATGTTGTATCCTAATTATCCAGCAGCATTTATCTATTGCAACGCCAAGTTTTGAGTTAGATCCTTTGAATTGATTAGGAGGAACAAAACTGAGCAAATCTTTGTACATCTGATGATCCTGCC</genome_strand>
        <mrna_strand>CTCGTGCTTTCGTTTGTGCTGAAGGCAAGATATTTGATGTGTCAGAATGGGCCATATGTCAG................................................................................GGCATGGCTTGTAGACCCAATACCCATAGACCGAGTTTCCATGTGAACATGGTTGGATTAGAGAAATCATCCCAGAGATCCAATTCAAGTAGGTACCCGTGGGATTTTGATGCTGAGATGACAGATGAAGATGAAGAATTTGAGCTGTGGCTCCAGCAAGCTCTAGCATCTGGACTTTTTTGTGAGACGCCAAAGCGGAGAAAAACTTGGAGTCCTTTCAAGTTGAATCAGATGAAAGGAAAGAAGCAATGGAGAAGGTCTTCATGAGTTACATGCACATCATAATTGGTTACGATGCTCAGATGCCATTTTTGTGATGATTCAACATCCACTGCCCCCTAAAATCAGGACAAAATGAAAAACGAGGATAAAAAGACATGATGTGATATCTTAAGGTTTCATATGCATCAACATGGAGATGACCAAGCTTCTCATCAGGGGAGAGCTCATCTGTTGGCTTGGCTAAACAAGTATAAATGTGCTGGTTAGCTGATTCATTTGTATATATCATCCTAATTATCCGGCTTGCGTACACACCACCCCTTTCAGACTATGTGGGATTACACT-AGATATGTTGTATCCTAATTATCCGGCAGCATTTATCTATTGCAATGCTCAGTTTTGAGCTAGATCATTTGAATTTGATANGANGAACAAAACTGAGCAAATCTTTGTACATCTGATGATCCTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468060" ref_strand="+" ref_description="SGN-E468060 [cSTB-2-K22]">
      <seq>ttttttttttcgtgtttaaatatgtggaatgcagcgggatcaacagtatgaattgtcctacaactgcattgcacagaagagtacaatttttttctctgaaatttattgcacctcaagtagtccaagtccaggcaggatcatcagatgtacaaagatttgctcagttttgttcctcctaatcaattcaaaggatctagctcaaaactgagcattgcaatagataaatgctgccggataattaggatacaacatatctagtgtaatcccacatagtctggaaagggtggtgtgtacgcaagccggataattaggatgatatatacaaatggatcagcaaaccagcacatttatacttgtttagccaagccaacagatgagctctcccctgatgagaagcttggtcatctccatgttgatgcatatgaaaccttaagatatcacatcatgtctttttatcctcgtttttcattttgtcctgattttagggggcagtggatgttgaatcatcacaaaaatggcacctgagcatcgtaaccaattatgatgcatgtaactcatgaagaccttctccattgcttctttcctttcatctgattcaacttgaaaggactccaagtttttctccgctttggcgtctcacaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="78316" stop="77079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78023" g_stop="77379" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E468060" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E468060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78023" e_stop="77379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTAGATCTCGTGTTTAAATATGTGGAATG-AGCAGGATCAACAGTATGAATTGTCCTACAACTGCATTGCACAGAAGAGTACAATTTTTTTTCTCTGAAATTTATTACACCTCAAGTAGTCCAAGTCCAGGCAGGATCATCAGATGTACAAAGATTTGCTCAGTTTTGTTCCTCCTAATCAATTCAAAGGATCTAACTCAAAACTTGGCGTTGCAATAGATAAATGCTGCTGGATAATTAGGATACAACATATCTTAGTGTAATCCCACATAGTCTGGAAAGGGTGGT-TGTAAGCAAGCCGGATAATTAGGATGATATATACAAATGGATCAGCTAACCAGCACATTTATACTTGTTTAGCCAAACCAACAGATGAGCTCTCCCCTGATGAGAAGTTTGGTCATCTCCATGTTGATGCATATGAAACCTTAAGATATCACATCATGTCTTTTTATCCTCGTTTTTCATTTTGTCCTGATTTTAGGGGGCAGTGGATGTTGAATCATCACAAAAATGGCATCTGAGCATCGTAACCGATTATGATGCATGTAACTCATGAAGACCTTCTCCATTGCTTCTTTCCTTTCATCTGATTCAACTTGAAAGGACTCCAAGTTTTTCTCCGCTTTGGCGTCTCACAAAAA</genome_strand>
        <mrna_strand>TTTTTTTTTTCGTGTTTAAATATGTGGAATGCAGCGGGATCAACAGTATGAATTGTCCTACAACTGCATTGCACAGAAGAGTACAATTTTT-TTCTCTGAAATTTATTGCACCTCAAGTAGTCCAAGTCCAGGCAGGATCATCAGATGTACAAAGATTTGCTCAGTTTTGTTCCTCCTAATCAATTCAAAGGATCTAGCTCAAAACTGAGCATTGCAATAGATAAATGCTGCCGGATAATTAGGATACAACATATC-TAGTGTAATCCCACATAGTCTGGAAAGGGTGGTGTGTACGCAAGCCGGATAATTAGGATGATATATACAAATGGATCAGCAAACCAGCACATTTATACTTGTTTAGCCAAGCCAACAGATGAGCTCTCCCCTGATGAGAAGCTTGGTCATCTCCATGTTGATGCATATGAAACCTTAAGATATCACATCATGTCTTTTTATCCTCGTTTTTCATTTTGTCCTGATTTTAGGGGGCAGTGGATGTTGAATCATCACAAAAATGGCACCTGAGCATCGTAACCAATTATGATGCATGTAACTCATGAAGACCTTCTCCATTGCTTCTTTCCTTTCATCTGATTCAACTTGAAAGGACTCCAAGTTTTTCTCCGCTTTGGCGTCTCACAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E570224" ref_strand="+" ref_description="SGN-E570224 [14774]">
      <seq>gtattatatagcgcctggcgtttctctgaaatttattgcacctcaagtagtccaagtccaggcaggatcatcagatgtacaaagatttgctcagttttgttcctcctaatcaattcaaaggatctagctcaaaactgagcattgcgatagataaatgctgccggataattaggatacaacatatctagtgtaatcccacatagtctggaaagggtggtgtgtacgcaagccggataattaggatgatatatacaacatggatcagcaaaccagccacatttatacttgtttagccaagccaacagatgagctctcccctgatgagaagcttggtcatctccatgttgatgcatatgaaaccgttaagatatcacatcagtgtctttttatcctcgtttgttcattttgtcctgattttagggggcagtggatgttgaatcatcacgaaaaatggcacctgagcatcgtaaccaattatgatgcatgtaactcatgaagaccttctccattgcttctttcctttcatctgattccaacttgaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="78233" stop="77118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77933" g_stop="77416" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="545" r_length="525" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E570224" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E570224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77933" e_stop="77416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTGAAATTTATTACACCTCAAGTAGTCCAAGTCCAGGCAGGATCATCAGATGTACAAAGATTTGCTCAGTTTTGTTCCTCCTAATCAATTCAAAGGATCTAACTCAAAACTTGGCGTTGCAATAGATAAATGCTGCTGGATAATTAGGATACAACATATCTTAGTGTAATCCCACATAGTCTGGAAAGGGTGGT-TGTAAGCAAGCCGGATAATTAGGATGATATATACAA-ATGGATCAGCTAACCAG-CACATTTATACTTGTTTAGCCAAACCAACAGATGAGCTCTCCCCTGATGAGAAGTTTGGTCATCTCCATGTTGATGCATATGAAACC-TTAAGATATCACATCA-TGTCTTTTTATCCTCGTTT-TTCATTTTGTCCTGATTTTAGGGGGCAGTGGATGTTGAATCATCAC-AAAAATGGCATCTGAGCATCGTAACCGATTATGATGCATGTAACTCATGAAGACCTTCTCCATTGCTTCTTTCCTTTCATCTGATT-CAACTTGAAAGG</genome_strand>
        <mrna_strand>TTTCTCTGAAATTTATTGCACCTCAAGTAGTCCAAGTCCAGGCAGGATCATCAGATGTACAAAGATTTGCTCAGTTTTGTTCCTCCTAATCAATTCAAAGGATCTAGCTCAAAACTGAGCATTGCGATAGATAAATGCTGCCGGATAATTAGGATACAACATATC-TAGTGTAATCCCACATAGTCTGGAAAGGGTGGTGTGTACGCAAGCCGGATAATTAGGATGATATATACAACATGGATCAGCAAACCAGCCACATTTATACTTGTTTAGCCAAGCCAACAGATGAGCTCTCCCCTGATGAGAAGCTTGGTCATCTCCATGTTGATGCATATGAAACCGTTAAGATATCACATCAGTGTCTTTTTATCCTCGTTTGTTCATTTTGTCCTGATTTTAGGGGGCAGTGGATGTTGAATCATCACGAAAAATGGCACCTGAGCATCGTAACCAATTATGATGCATGTAACTCATGAAGACCTTCTCCATTGCTTCTTTCCTTTCATCTGATTCCAACTTGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E421526" ref_strand="+" ref_description="SGN-E421526 [STM-33-E1]">
      <seq>ctcgtgtttaaatatgtggaatgcagcgggatcaacagtatgaattgtctttcaactgcattggacagattagtacagtttttttctctgaacagcattgcacctcaagtagtccaagtccaggcaggatcatcagatgtacaaagatttgctcagttttgttcctcctaattaattcaaatgatctagctcaaaactgagcattgcaatagataaatgctgccggataattaggatacaacatatctagtgtaatcccacatagtctggaaagggtggtgtgtacgcaagccagataattaggatgatatatacaaatggatcagctaaccagcacatttatacttgtttagccaagccaacagatgagctctcccctgatgagaagcttggtcatctccatgttgatgcatatgaaaccttaagatatcacatcatgtctttttatcctcgtttttcaatttgtcctgattttagggggcagtggatgttgaatcatcacaaaaatggcatctgagcatcgtaaccaattatgatgtgcatgtaactcatgaagaccttctccattgcttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="78315" stop="77142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78015" g_stop="77442" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E421526" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E421526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78015" e_stop="77442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGTGTTTAAATATGTGGAATG-AGCAGGATCAACAGTATGAATTGTCCTACAACTGCATTGCACAGAAGAGTACAATTTTTTTTCTCTGAAATTTATTACACCTCAAGTAGTCCAAGTCCAGGCAGGATCATCAGATGTACAAAGATTTGCTCAGTTTTGTTCCTCCTAATCAATTCAAAGGATCTAACTCAAAACTTGGCGTTGCAATAGATAAATGCTGCTGGATAATTAGGATACAACATATCTTAGTGTAATCCCACATAGTCTGGAAAGGGTGGT-TGTAAGCAAGCCGGATAATTAGGATGATATATACAAATGGATCAGCTAACCAGCACATTTATACTTGTTTAGCCAAACCAACAGATGAGCTCTCCCCTGATGAGAAGTTTGGTCATCTCCATGTTGATGCATATGAAACCTTAAGATATCACATCATGTCTTTTTATCCTCGTTTTTCATTTTGTCCTGATTTTAGGGGGCAGTGGATGTTGAATCATCACAAAAATGGCATCTGAGCATCGTAACCGATTATGA--TGCATGTAACTCATGAAGACCTTCTCCATTGCTTCTTT</genome_strand>
        <mrna_strand>CTCGTGTTTAAATATGTGGAATGCAGCGGGATCAACAGTATGAATTGTCTTTCAACTGCATTGGACAGATTAGTAC-AGTTTTTTTCTCTGAACAGCATTGCACCTCAAGTAGTCCAAGTCCAGGCAGGATCATCAGATGTACAAAGATTTGCTCAGTTTTGTTCCTCCTAATTAATTCAAATGATCTAGCTCAAAACTGAGCATTGCAATAGATAAATGCTGCCGGATAATTAGGATACAACATATC-TAGTGTAATCCCACATAGTCTGGAAAGGGTGGTGTGTACGCAAGCCAGATAATTAGGATGATATATACAAATGGATCAGCTAACCAGCACATTTATACTTGTTTAGCCAAGCCAACAGATGAGCTCTCCCCTGATGAGAAGCTTGGTCATCTCCATGTTGATGCATATGAAACCTTAAGATATCACATCATGTCTTTTTATCCTCGTTTTTCAATTTGTCCTGATTTTAGGGGGCAGTGGATGTTGAATCATCACAAAAATGGCATCTGAGCATCGTAACCAATTATGATGTGCATGTAACTCATGAAGACCTTCTCCATTGCTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E557281" ref_strand="-" ref_description="SGN-E557281 [16055]">
      <seq>ttggtggatgaattcgacatccactgcccccctaaaatcaggacaaaatgaaaaacgaggatacaaagacatgatgtgatatcttaaggtttcatatgcatcaacatggagatgaccaagctcctcatcaggggagagctcatctgttggcttgactaaacaagtataaatgtgctggttagctgatccatttgtatatatcatcctaattatccggcttgcgtacacaccaccctttctagactatgtgggattacactagatatgttgtatcctaattatccggcagcatttatctattgcaatgctcagttttgagctagatcctttgaattgattaggaggaacaaaactgagcaaatctttgtacatctgaagatcctgcctggacttggactacttgaggtgcaataaatttcagagaaaaaaattgtactcttctgtgcaatgcagttgtaggacaatttatactgttgatcccgctgcattccacatatttaaacacgagatctatattctttccttctgatacctttatgtgaagttaatagatttggacatagcgagagtttagtacattaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="77209" stop="78382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77509" g_stop="78082" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="581" polyA_stop="599"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E557281" ref_strand="-">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E557281" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="77509" e_stop="78082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGTGATG-ATTCAACATCCACTG-CCCCCTAAAATCAGGACAAAATGAAAAACGAGGATAAAAAGACATGATGTGATATCTTAAGGTTTCATATGCATCAACATGGAGATGACCAAACTTCTCATCAGGGGAGAGCTCATCTGTTGGTTTGGCTAAACAAGTATAAATGTGCTGGTTAGCTGATCCATTTGTATATATCATCCTAATTATCCGGCTTGCTTACA-ACCACCCTTTCCAGACTATGTGGGATTACACTAAGATATGTTGTATCCTAATTATCCAGCAGCATTTATCTATTGCAACGCCAAGTTTTGAGTTAGATCCTTTGAATTGATTAGGAGGAACAAAACTGAGCAAATCTTTGTACATCTGATGATCCTGCCTGGACTTGGACTACTTGAGGTGTAATAAATTTCAGAGAAAAAAAATTGTACTCTTCTGTGCAATGCAGTTGTAGGACAATTCATACTGTTGATCCTGCT-CATTCCACATATTTAAACACGAGATCTACATTCTTTCCTTCTAATACCTTTATGTGAAGTTAGTGGATTTGGACACAGCGAGAGTTTAGT</genome_strand>
        <mrna_strand>TTGGTG-GATGAATTCGACATCCACTGCCCCCCTAAAATCAGGACAAAATGAAAAACGAGGATACAAAGACATGATGTGATATCTTAAGGTTTCATATGCATCAACATGGAGATGACCAAGCTCCTCATCAGGGGAGAGCTCATCTGTTGGCTTGACTAAACAAGTATAAATGTGCTGGTTAGCTGATCCATTTGTATATATCATCCTAATTATCCGGCTTGCGTACACACCACCCTTTCTAGACTATGTGGGATTACACT-AGATATGTTGTATCCTAATTATCCGGCAGCATTTATCTATTGCAATGCTCAGTTTTGAGCTAGATCCTTTGAATTGATTAGGAGGAACAAAACTGAGCAAATCTTTGTACATCTGAAGATCCTGCCTGGACTTGGACTACTTGAGGTGCAATAAATTTCAGAG-AAAAAAATTGTACTCTTCTGTGCAATGCAGTTGTAGGACAATTTATACTGTTGATCCCGCTGCATTCCACATATTTAAACACGAGATCTATATTCTTTCCTTCTGATACCTTTATGTGAAGTTAATAGATTTGGACATAGCGAGAGTTTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561566" ref_strand="-" ref_description="SGN-E561566 [16873]">
      <seq>acatgatgtgatatcttaaggtttcatatgcatcaacatggagatgaccaagctcctcatcaggggagagctcatctgttggcttgactaaaccaagtataaatgtgctggttagctgatccatttgtatatatcatcctaattatccggcttgcgtacacaccaccctttctagactatgtgggattacactagatatgttgtatcctaattatccggcagcatttatctattgcaatgctcagttttgagctagatcctttgaattgattaggaggaacaaaactgagcaaatctttgtacatctgaagatcctgcctggacttggactacttgaggtgcaataaatttcagagaaaaaaattgtactcttctgtgcaatgcagttgtaggacaatttatactgttgatcccgctgcattccacatatttaaacaccgagatctatattctttccttctgatacctttatgtgaagttaatagatttggacatagcgagagtttagtacattaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="77276" stop="78382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77576" g_stop="78082" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="515" polyA_stop="528"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E561566" ref_strand="-">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561566" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="77576" e_stop="78082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATGATGTGATATCTTAAGGTTTCATATGCATCAACATGGAGATGACCAAACTTCTCATCAGGGGAGAGCTCATCTGTTGGTTTGGCTAAA-CAAGTATAAATGTGCTGGTTAGCTGATCCATTTGTATATATCATCCTAATTATCCGGCTTGCTTACA-ACCACCCTTTCCAGACTATGTGGGATTACACTAAGATATGTTGTATCCTAATTATCCAGCAGCATTTATCTATTGCAACGCCAAGTTTTGAGTTAGATCCTTTGAATTGATTAGGAGGAACAAAACTGAGCAAATCTTTGTACATCTGATGATCCTGCCTGGACTTGGACTACTTGAGGTGTAATAAATTTCAGAGAAAAAAAATTGTACTCTTCTGTGCAATGCAGTTGTAGGACAATTCATACTGTTGATCCTGCT-CATTCCACATATTTAAACA-CGAGATCTACATTCTTTCCTTCTAATACCTTTATGTGAAGTTAGTGGATTTGGACACAGCGAGAGTTTAGT</genome_strand>
        <mrna_strand>ACATGATGTGATATCTTAAGGTTTCATATGCATCAACATGGAGATGACCAAGCTCCTCATCAGGGGAGAGCTCATCTGTTGGCTTGACTAAACCAAGTATAAATGTGCTGGTTAGCTGATCCATTTGTATATATCATCCTAATTATCCGGCTTGCGTACACACCACCCTTTCTAGACTATGTGGGATTACACT-AGATATGTTGTATCCTAATTATCCGGCAGCATTTATCTATTGCAATGCTCAGTTTTGAGCTAGATCCTTTGAATTGATTAGGAGGAACAAAACTGAGCAAATCTTTGTACATCTGAAGATCCTGCCTGGACTTGGACTACTTGAGGTGCAATAAATTTCAGAG-AAAAAAATTGTACTCTTCTGTGCAATGCAGTTGTAGGACAATTTATACTGTTGATCCCGCTGCATTCCACATATTTAAACACCGAGATCTATATTCTTTCCTTCTGATACCTTTATGTGAAGTTAATAGATTTGGACATAGCGAGAGTTTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E593813" ref_strand="+" ref_description="SGN-E593813 [37051]">
      <seq>aaatgtgctggtttgctgatccatttgtatatatcatcctaattatccggcttgcgtacacaccaccctttccagactatgtgggattacactagatatgttgtatcctaattatccggcagcatttatctattgcaatgctcagttttgagctagatcctttgaattgattaggaggaacaaaactgagcaaatctttgtacatctgatgatcctgcctggacttggactacttgaggtgcaataaatttcagagaaaaaaattgtactcttctgtgcaatgcagttgtaggacaattcatactgttgatcccgctgcattccacatatttaaacacgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="77375" stop="78316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77675" g_stop="78023" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E593813" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E593813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77675" e_stop="78023"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGTGCTGGTTAGCTGATCCATTTGTATATATCATCCTAATTATCCGGCTTGCTTACA-ACCACCCTTTCCAGACTATGTGGGATTACACTAAGATATGTTGTATCCTAATTATCCAGCAGCATTTATCTATTGCAACGCCAAGTTTTGAGTTAGATCCTTTGAATTGATTAGGAGGAACAAAACTGAGCAAATCTTTGTACATCTGATGATCCTGCCTGGACTTGGACTACTTGAGGTGTAATAAATTTCAGAGAAAAAAAATTGTACTCTTCTGTGCAATGCAGTTGTAGGACAATTCATACTGTTGATCCTGCT-CATTCCACATATTTAAACACGAGATCTACAT</genome_strand>
        <mrna_strand>AAATGTGCTGGTTTGCTGATCCATTTGTATATATCATCCTAATTATCCGGCTTGCGTACACACCACCCTTTCCAGACTATGTGGGATTACACT-AGATATGTTGTATCCTAATTATCCGGCAGCATTTATCTATTGCAATGCTCAGTTTTGAGCTAGATCCTTTGAATTGATTAGGAGGAACAAAACTGAGCAAATCTTTGTACATCTGATGATCCTGCCTGGACTTGGACTACTTGAGGTGCAATAAATTTCAGAG-AAAAAAATTGTACTCTTCTGTGCAATGCAGTTGTAGGACAATTCATACTGTTGATCCCGCTGCATTCCACATATTTAAACACGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E744458" ref_strand="+" ref_description="SGN-E744458 [GI|399613]">
      <seq>aaccacccttccagacctatgtgggattacactagatatgttgtatcctaattatccagcagcatttatctattgcaacgccaagttttgagttagatcctttgaattgattaggaggaacaaaactgagcaaatctttgtacatctgatgatcctgcctggacttggactacttgaggtgtaataaatttcagagaaaaaaaattgtactcttctgtgcaatgcagttgtaggacaattcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="77434" stop="78277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77734" g_stop="77977" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E744458" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>244</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77734" e_stop="77977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCACCCTTTCCAGA-CTATGTGGGATTACACTAAGATATGTTGTATCCTAATTATCCAGCAGCATTTATCTATTGCAACGCCAAGTTTTGAGTTAGATCCTTTGAATTGATTAGGAGGAACAAAACTGAGCAAATCTTTGTACATCTGATGATCCTGCCTGGACTTGGACTACTTGAGGTGTAATAAATTTCAGAGAAAAAAAATTGTACTCTTCTGTGCAATGCAGTTGTAGGACAATTCAT</genome_strand>
        <mrna_strand>AACCACCC-TTCCAGACCTATGTGGGATTACACT-AGATATGTTGTATCCTAATTATCCAGCAGCATTTATCTATTGCAACGCCAAGTTTTGAGTTAGATCCTTTGAATTGATTAGGAGGAACAAAACTGAGCAAATCTTTGTACATCTGATGATCCTGCCTGGACTTGGACTACTTGAGGTGTAATAAATTTCAGAGAAAAAAAATTGTACTCTTCTGTGCAATGCAGTTGTAGGACAATTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E411184" ref_strand="+" ref_description="SGN-E411184 [STM-14-C2]">
      <seq>atatgtggaatgctgcgggatcaacagtatgaattgtcctacaactgcattgcacagaagagtacaatttttttctctgaaatttattgcacctcaagtagtccaagtccaggagggatcatcagatgtacaaagatttgctcagttttgttcctcctaatcaattcaaaggatctag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="78291" stop="77528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78004" g_stop="77827" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E411184" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>178</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E411184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78004" e_stop="77827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGTGGAATG-AGCAGGATCAACAGTATGAATTGTCCTACAACTGCATTGCACAGAAGAGTACAATTTTTTTTCTCTGAAATTTATTACACCTCAAGTAGTCCAAGTCCAGGCAGGATCATCAGATGTACAAAGATTTGCTCAGTTTTGTTCCTCCTAATCAATTCAAAGGATCTAA</genome_strand>
        <mrna_strand>ATATGTGGAATGCTGCGGGATCAACAGTATGAATTGTCCTACAACTGCATTGCACAGAAGAGTACAA-TTTTTTTCTCTGAAATTTATTGCACCTCAAGTAGTCCAAGTCCAGGAGGGATCATCAGATGTACAAAGATTTGCTCAGTTTTGTTCCTCCTAATCAATTCAAAGGATCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E411645" ref_strand="-" ref_description="SGN-E411645 [STM-15-C21]">
      <seq>gagctgtttcaatgttgaaacctggcggtttctttgcatttgagacaaatggtgatgaacagagcaaattcctagtccactacattgagactaagaagcaaggtaacttctctaaagtgaagatggtatcagattttgccggcatccagagatttgtaacaggatttagaggaagatgaactgtaacgttagccaaagaaattatacgagggaacgaatgtggaagagtcaagggtttggaggctacagattctgttctcttgggtttgaacaattcagttttgatctttgatctttggacttatattatctcagattgtctctgatcttgtgcaaagaatcttttacagtctctagtaggcaaacttcagtgtactctgaacaaagtgattaaaggctagtgcaagtttgataccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="79519" stop="78001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79219" g_stop="79176" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79175" i_stop="78684" i_length="492">
            <donor d_prob="0.995" d_score="0.95"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78683" g_stop="78336" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="387" r_length="343" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="417" polyA_stop="431"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E411645" ref_strand="-">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E411645" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="79219" e_stop="79176"/>
          <exon e_start="78683" e_stop="78336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTGTTTCAATGTTGAGACCTGGCGGTTTCTTTGCGTTTGAGGTAACTATCCATTTTCTGGATCAAGCGTTTTACACTTTCCCGTTTGACTTGTTATTCGATAGTGGCAAGCTCTGGCACCTCATTGGCTCACAATGACTAATCTTACAAGATGAATATGAACTTCTCAATCATATATAATCTCTTACTTCTTTTACCTTGAGGGAGTCCTTGATTTATTCATGAGTGTGTACATTTTTCTAAGATTCTCCACTAGTTTTGCAAGGGTTTAACTGTTTTAAGTCACATAAATATTGCAAGAACAACTAACCTGGAATGATAGATAGTAGATGTTTTTAAGATTATCCCCAAATATTAATGGAGATACAGAATACTAATTCATTTCTCAAAAACAGAATGTTTGCTTATTGACTGTAAAAGAGACATTTAAAGCAGAACCTGATAGGCATGTTTAGTTTTGTACTCTCCTAGCCTCATTGCAAAAAATGTCCATTTTAATTTGCTTATTAATGCCCTTTCATCATGTTGCTGCAGACAAATGGTGATGAACAGAGCAAATTCCTAGTCCACTACATCGAGACTAAGAAGCAAGGTAACTTCTCTAAAGTGAAGATGGTATCAGATTTTGCCGGCATCAAGAGATTTATAACAGGATTTAGAGGAAGATGATCTGTGACATTAGCCAAAGAAATCATACAAGGGAATGAATGTGGAAGAACCAGGGGTTTGGGGGCTACAGATTCTGTTCTCTTGGGTTTGAACAATTCAGTTTTGCTCTTTGGACTTTACAGAAAGATATATTATCTCAGATTGTCTCTGATCTTGTGCAAAGAGTCATTTACTACTCTCTAGTAGGCAAACTTCAGTGTAAAGTGATTAAAG</genome_strand>
        <mrna_strand>GAGCTGTTTCAATGTTGAAACCTGGCGGTTTCTTTGCATTTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAATGGTGATGAACAGAGCAAATTCCTAGTCCACTACATTGAGACTAAGAAGCAAGGTAACTTCTCTAAAGTGAAGATGGTATCAGATTTTGCCGGCATCCAGAGATTTGTAACAGGATTTAGAGGAAGATGAACTGTAACGTTAGCCAAAGAAATTATACGAGGGAACGAATGTGGAAGAGTCAAGGGTTTGGAGGCTACAGATTCTGTTCTCTTGGGTTTGAACAATTCAGTTTTGATCTTTGATCTTT---G-GACTTATATTATCTCAGATTGTCTCTGATCTTGTGCAAAGAATCTTTTAC-AGTCTCTAGTAGGCAAACTTCAGTGTACTCTGAACAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310618" ref_strand="+" ref_description="SGN-E310618 [cLEZ-19-I9]">
      <seq>agctgattgtggaccttgtcgatgatgctattaaggagaatggggaattgagggaaggattgtgggctgatttggggactggaagtggtgcacttgctattgggattgcaaggattttgggtacttctggtagagttgttgctactgatttaagccctgttgctactgcagttgcatcttataatgtgcagaggtatgatttggaggaaaaagtgcatgtaaagcaaggatcttggtttgaacctttgagagataatgaaggagaatttgtgggactggtcagtaatccaccatatattccaagcaaagatattggtggactacaagctgaagttggcagacatgaacctagactggcgttagacggtggagcaagtggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="80609" stop="78947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80309" g_stop="80104" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80103" i_stop="79422" i_length="682">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.772" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79421" g_stop="79247" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="381" r_length="175" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E310618" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80309" e_stop="80104"/>
          <exon e_start="79421" e_stop="79247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGATTGTGGACCTTGTCGATGATGCTATTAAGGAGAATGGGGAATTGAGGGAAGGATTGTGGGCTGATTTGGGGACTGGAAGTGGTGCACTTGCTATTGGGATTGCAAGGATTTTGGGTACTTCTGGTAGAGTTGTTGCTACTGATTTAAGCCCTGTTGCTACTGCAGTTGCATCTTATAATGTGCAGAGGTATGATTTGGAGGTTAGTATATTTTGCAATTTGCTTGTTGCTCCTAGTATGGTTTGAAATGAGCTTAAATGAAAGCAGGATTATATAGTCGACCCCAACTTGTTTGGGACCGAGGCGTAGTTGTTGCTCTTAGTATGGTTTAAATGAGCCTTAAATGAAGGCAGGGATTCATATATTGGACCCCAACTTGTTTTGGACTGAGGCGTAGTTGTTGTTGCTCTTAGTATGGTTTGAAATGAGCTTAAATGAAAACGGGGATTCATATAGCTGACCCCAACTTGTTTGGGACTGAGGCATGGTCGTTACTTGTTGCTCTTAGTATGGTTTGATGAGCTTAAAAGAAGGCAGTGATTCATAGAGCTGAACCCAACTTGTTTGGGACTGAGGCATAGTTGTGGTTACTTGTTGCCCTTAGTAAGGTTCCTCTTTGAGATTTTACTTCTGTGTCACTGTATTTTCATAGTTGATTGTCTCAAGCTAGTTGATCTTTAAAGCTAACTGCTATAGTTGTAGAATTGACTAGTTTAGCAAAAGCTTTGATTCTTAAATATTTTTGGCTGAAGAAAAATGGGAACTTGATCAGAAATCAGAATTTTATACATTGTTATAGAATTAGTGAAATAGAGTTTAATCATTGATTAAACTTTCAGGGCTGCAAATTTTGAATAGAGCATTGTCTTGAATTTTGTGCTAGGAAAAAGTGCATGTAAAGCAAGGATCTTGGTTTGAACCTTTGAGAGATAATGAAGGAGAATTTGTGGGACTGGTCAGTAATCCACCATATATTCCAAGCAAAGATATTGGTGGACTACAAGCTGAAGTTGGCAGACATGAACCTAGACTGGCGTTAGACGGTGGAGCAAGTGGTA</genome_strand>
        <mrna_strand>AGCTGATTGTGGACCTTGTCGATGATGCTATTAAGGAGAATGGGGAATTGAGGGAAGGATTGTGGGCTGATTTGGGGACTGGAAGTGGTGCACTTGCTATTGGGATTGCAAGGATTTTGGGTACTTCTGGTAGAGTTGTTGCTACTGATTTAAGCCCTGTTGCTACTGCAGTTGCATCTTATAATGTGCAGAGGTATGATTTGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAGTGCATGTAAAGCAAGGATCTTGGTTTGAACCTTTGAGAGATAATGAAGGAGAATTTGTGGGACTGGTCAGTAATCCACCATATATTCCAAGCAAAGATATTGGTGGACTACAAGCTGAAGTTGGCAGACATGAACCTAGACTGGCGTTAGACGGTGGAGCAAGTGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E611146" ref_strand="+" ref_description="SGN-E611146 [60893]">
      <seq>cttcattcgacccatttcatgttgctctgtttcatctccagctacctcactgaaacttcaaaaaccgctatttttaaggccacccaccttcaaaacaaccatatcagacctcaaaaaatggcacctttgggctaaatccctaacttcttctgtgggttccactttcttggaactggacaatggtccagactccgaattgttgctcagagagctaaattggcttgttgaagatgcaattcaaacacccaaatcgttcttgcaacaacccaaaaaaaattacaatgataatagctctgtttcaattcgggcgtctttggaagaactttatatgttgtggaaacaaagggtagaagaaagaaggccatttcagtatgtggttggttgtgaacattggagggatttggttttgagtgttcaagatggggttttgattccaaggccagagactgagctgattgtggaccttgtggatgatgctattaaggagaatgaggagttgagggaaggattgtgggctgatttggggactggaagtggtgcacttgctattgggattgcaaggattttgggtagttctggtagagttgttgctactgatttaagccctgttgctactgcagttgcatcttataatgtgcagaggtatgaattggaggaaaaagtgcatgtaaagcaaagatcttggtttgagcctttgagagatgatgaaggacaatttgtgggactggtcagtaatccaccgtatatccaagcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="81058" stop="79019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80758" g_stop="80104" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80103" i_stop="79422" i_length="682">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.772" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79421" g_stop="79319" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="757" r_length="102" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E611146" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E611146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80758" e_stop="80104"/>
          <exon e_start="79421" e_stop="79319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATTCGACCAATTTCATGTTGCTCTGTTTCATCTCCAGCAACCTCAGTGAAACCTCAAAAACCTATATTTTTAAGGCCACCCACCTTCAAAACAACCATATCAGACCTTCAAAAATGGCATCATTGGGCTAAATCCCTAATTTCTTCTGTGGGTTCCACTTTCTTGGAACTGGACAATGGTCCAGACTCCGAATTGTTGCTCAGGGAGCTAAATTGGCTTGTTGAAGATGCAATTGAAACACCAAAATCTTTCTTGCAACAACCCCACAAAAATTACAATGATAATAGCTCAGTTGCAGTTCGGGCGTCTTTGGAACAACTGTATATGTTGTGGAAACGAAGGGTAGAAGAAAGAATGCCATTTCAGTATGTGGTTGGCTGTGAACATTGGAGGGATTTGGTTTTGAGTGTTCAAGAAGGGGTTTTGATTCCAAGGCCAGAGACTGAGCTGATTGTGGACCTTGTCGATGATGCTATTAAGGAGAATGGGGAATTGAGGGAAGGATTGTGGGCTGATTTGGGGACTGGAAGTGGTGCACTTGCTATTGGGATTGCAAGGATTTTGGGTACTTCTGGTAGAGTTGTTGCTACTGATTTAAGCCCTGTTGCTACTGCAGTTGCATCTTATAATGTGCAGAGGTATGATTTGGAGGTTAGTATATTTTGCAATTTGCTTGTTGCTCCTAGTATGGTTTGAAATGAGCTTAAATGAAAGCAGGATTATATAGTCGACCCCAACTTGTTTGGGACCGAGGCGTAGTTGTTGCTCTTAGTATGGTTTAAATGAGCCTTAAATGAAGGCAGGGATTCATATATTGGACCCCAACTTGTTTTGGACTGAGGCGTAGTTGTTGTTGCTCTTAGTATGGTTTGAAATGAGCTTAAATGAAAACGGGGATTCATATAGCTGACCCCAACTTGTTTGGGACTGAGGCATGGTCGTTACTTGTTGCTCTTAGTATGGTTTGATGAGCTTAAAAGAAGGCAGTGATTCATAGAGCTGAACCCAACTTGTTTGGGACTGAGGCATAGTTGTGGTTACTTGTTGCCCTTAGTAAGGTTCCTCTTTGAGATTTTACTTCTGTGTCACTGTATTTTCATAGTTGATTGTCTCAAGCTAGTTGATCTTTAAAGCTAACTGCTATAGTTGTAGAATTGACTAGTTTAGCAAAAGCTTTGATTCTTAAATATTTTTGGCTGAAGAAAAATGGGAACTTGATCAGAAATCAGAATTTTATACATTGTTATAGAATTAGTGAAATAGAGTTTAATCATTGATTAAACTTTCAGGGCTGCAAATTTTGAATAGAGCATTGTCTTGAATTTTGTGCTAGGAAAAAGTGCATGTAAAGCAAGGATCTTGGTTTGAACCTTTGAGAGATAATGAAGGAGAATTTGTGGGACTGGTCAGTAATCCACCATATATTCCAAGCAAAG</genome_strand>
        <mrna_strand>CTTCATTCGACCCATTTCATGTTGCTCTGTTTCATCTCCAGCTACCTCACTGAAACTTCAAAAACCGCTATTTTTAAGGCCACCCACCTTCAAAACAACCATATCAGACCTCAAAAAATGGCACCTTTGGGCTAAATCCCTAACTTCTTCTGTGGGTTCCACTTTCTTGGAACTGGACAATGGTCCAGACTCCGAATTGTTGCTCAGAGAGCTAAATTGGCTTGTTGAAGATGCAATTCAAACACCCAAATCGTTCTTGCAACAACCCAAAAAAAATTACAATGATAATAGCTCTGTTTCAATTCGGGCGTCTTTGGAAGAACTTTATATGTTGTGGAAACAAAGGGTAGAAGAAAGAAGGCCATTTCAGTATGTGGTTGGTTGTGAACATTGGAGGGATTTGGTTTTGAGTGTTCAAGATGGGGTTTTGATTCCAAGGCCAGAGACTGAGCTGATTGTGGACCTTGTGGATGATGCTATTAAGGAGAATGAGGAGTTGAGGGAAGGATTGTGGGCTGATTTGGGGACTGGAAGTGGTGCACTTGCTATTGGGATTGCAAGGATTTTGGGTAGTTCTGGTAGAGTTGTTGCTACTGATTTAAGCCCTGTTGCTACTGCAGTTGCATCTTATAATGTGCAGAGGTATGAATTGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAGTGCATGTAAAGCAAAGATCTTGGTTTGAGCCTTTGAGAGATGATGAAGGACAATTTGTGGGACTGGTCAGTAATCCACCGTATA-TCCAAGCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314777" ref_strand="+" ref_description="SGN-E314777 [cTOA-20-B21]">
      <seq>aatgaagttgagcttcattcgaccaatttcatgttgctctgtttcatctccagcaacctcagtgaaacctcaaaaacctatatttttaaggccacccaccttcaaaacaaccatatcagaccttcaaaaatggcatcattgggctaaatccctaatttcttctgtgggttccactttcttggaactggacaatggtccagactccgaattgttgctcagggagctaaattggcttgttgaagatgcaattgaaacaccaaaatctttcttgcaacaaccccacaaaaattacaatgataatagctcagttgcagttcgggcgtctttggaacaactgtatatgttgtggaaacgaagggtagaagaaagaatgccatttcagtatgtggttggctgtgaacattggagggatttggttttgagtgttcaagaaggggttttgattccaaggccagagactgagctgattgtggaccttgtcgatgatgctattaaggagaatggggaattgagggaaggattgtgggctgatttggggactggaagtggtgcacttgctattgggattgcaaggattttgggtacttctggtagagttgttgctactgatttaagccctgttgctactgcagttgcatcttataatgtgcagaggaaaaagtgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="81070" stop="79805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80770" g_stop="80117" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="654" r_length="654" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E314777" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80770" e_stop="80117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGAAGTTGAGCTTCATTCGACCAATTTCATGTTGCTCTGTTTCATCTCCAGCAACCTCAGTGAAACCTCAAAAACCTATATTTTTAAGGCCACCCACCTTCAAAACAACCATATCAGACCTTCAAAAATGGCATCATTGGGCTAAATCCCTAATTTCTTCTGTGGGTTCCACTTTCTTGGAACTGGACAATGGTCCAGACTCCGAATTGTTGCTCAGGGAGCTAAATTGGCTTGTTGAAGATGCAATTGAAACACCAAAATCTTTCTTGCAACAACCCCACAAAAATTACAATGATAATAGCTCAGTTGCAGTTCGGGCGTCTTTGGAACAACTGTATATGTTGTGGAAACGAAGGGTAGAAGAAAGAATGCCATTTCAGTATGTGGTTGGCTGTGAACATTGGAGGGATTTGGTTTTGAGTGTTCAAGAAGGGGTTTTGATTCCAAGGCCAGAGACTGAGCTGATTGTGGACCTTGTCGATGATGCTATTAAGGAGAATGGGGAATTGAGGGAAGGATTGTGGGCTGATTTGGGGACTGGAAGTGGTGCACTTGCTATTGGGATTGCAAGGATTTTGGGTACTTCTGGTAGAGTTGTTGCTACTGATTTAAGCCCTGTTGCTACTGCAGTTGCATCTTATAATGTGCAGAG</genome_strand>
        <mrna_strand>AATGAAGTTGAGCTTCATTCGACCAATTTCATGTTGCTCTGTTTCATCTCCAGCAACCTCAGTGAAACCTCAAAAACCTATATTTTTAAGGCCACCCACCTTCAAAACAACCATATCAGACCTTCAAAAATGGCATCATTGGGCTAAATCCCTAATTTCTTCTGTGGGTTCCACTTTCTTGGAACTGGACAATGGTCCAGACTCCGAATTGTTGCTCAGGGAGCTAAATTGGCTTGTTGAAGATGCAATTGAAACACCAAAATCTTTCTTGCAACAACCCCACAAAAATTACAATGATAATAGCTCAGTTGCAGTTCGGGCGTCTTTGGAACAACTGTATATGTTGTGGAAACGAAGGGTAGAAGAAAGAATGCCATTTCAGTATGTGGTTGGCTGTGAACATTGGAGGGATTTGGTTTTGAGTGTTCAAGAAGGGGTTTTGATTCCAAGGCCAGAGACTGAGCTGATTGTGGACCTTGTCGATGATGCTATTAAGGAGAATGGGGAATTGAGGGAAGGATTGTGGGCTGATTTGGGGACTGGAAGTGGTGCACTTGCTATTGGGATTGCAAGGATTTTGGGTACTTCTGGTAGAGTTGTTGCTACTGATTTAAGCCCTGTTGCTACTGCAGTTGCATCTTATAATGTGCAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E411644" ref_strand="+" ref_description="SGN-E411644 [STM-15-C21]">
      <seq>gcgatttgcgagagattttgaagaaatgaggctaagcttcattcgacccatttcatgttgctctgtttcatctccagctacctcactgaaacttcaaaaaccgctctttttaaggccacccaccttcaaagcaaccatatcagacctcaaaaaatggcacctttgggctaaatccctaacttcttctgtgggttccactttcttggaactggacaatggtccagactccgaattgttgctcagagagctaaattggcttgttgaagatgcaattcaaacacccaaatcgttcttgcaacaaccccaaaaaaattacaatgataatagctctgtttcaattcgggcgtctttggaagaactatatatgttgtggaaacaaagggtagaagaaagaaggccatttcagtatgtggttggttgtgaacattggagggatttggttttgagtgttcaagaaggggttttgattccaaggccagagactgagctgattgtggaccttgtggatgatgctattaaggagaatgaggagttgagggaaggattgtgggctgatttggggactggaagtggtgcacttgctattgggattgcaaggattttgggtagttctggtagagttgttgctactgatttaagccctgttgctactgcagttgcatcttataatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="81094" stop="79824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80794" g_stop="80124" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="671" r_length="671" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E411644" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E411644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80794" e_stop="80124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACCTGCCTGTG-TGTCGAAGAAAATGAAGTTGAGCTTCATTCGACCAATTTCATGTTGCTCTGTTTCATCTCCAGCAACCTCAGTGAAACCTCAAAAACCTATATTTTTAAGGCCACCCACCTTCAAAACAACCATATCAGACCTTCAAAAATGGCATCATTGGGCTAAATCCCTAATTTCTTCTGTGGGTTCCACTTTCTTGGAACTGGACAATGGTCCAGACTCCGAATTGTTGCTCAGGGAGCTAAATTGGCTTGTTGAAGATGCAATTGAAACACCAAAATCTTTCTTGCAACAACCCCACAAAAATTACAATGATAATAGCTCAGTTGCAGTTCGGGCGTCTTTGGAACAACTGTATATGTTGTGGAAACGAAGGGTAGAAGAAAGAATGCCATTTCAGTATGTGGTTGGCTGTGAACATTGGAGGGATTTGGTTTTGAGTGTTCAAGAAGGGGTTTTGATTCCAAGGCCAGAGACTGAGCTGATTGTGGACCTTGTCGATGATGCTATTAAGGAGAATGGGGAATTGAGGGAAGGATTGTGGGCTGATTTGGGGACTGGAAGTGGTGCACTTGCTATTGGGATTGCAAGGATTTTGGGTACTTCTGGTAGAGTTGTTGCTACTGATTTAAGCCCTGTTGCTACTGCAGTTGCATCTTATAATG</genome_strand>
        <mrna_strand>GCGATTTGCGAGAGATTTTGAAG-AAATGAGGCTAAGCTTCATTCGACCCATTTCATGTTGCTCTGTTTCATCTCCAGCTACCTCACTGAAACTTCAAAAACCGCTCTTTTTAAGGCCACCCACCTTCAAAGCAACCATATCAGACCTCAAAAAATGGCACCTTTGGGCTAAATCCCTAACTTCTTCTGTGGGTTCCACTTTCTTGGAACTGGACAATGGTCCAGACTCCGAATTGTTGCTCAGAGAGCTAAATTGGCTTGTTGAAGATGCAATTCAAACACCCAAATCGTTCTTGCAACAACCCCAAAAAAATTACAATGATAATAGCTCTGTTTCAATTCGGGCGTCTTTGGAAGAACTATATATGTTGTGGAAACAAAGGGTAGAAGAAAGAAGGCCATTTCAGTATGTGGTTGGTTGTGAACATTGGAGGGATTTGGTTTTGAGTGTTCAAGAAGGGGTTTTGATTCCAAGGCCAGAGACTGAGCTGATTGTGGACCTTGTGGATGATGCTATTAAGGAGAATGAGGAGTTGAGGGAAGGATTGTGGGCTGATTTGGGGACTGGAAGTGGTGCACTTGCTATTGGGATTGCAAGGATTTTGGGTAGTTCTGGTAGAGTTGTTGCTACTGATTTAAGCCCTGTTGCTACTGCAGTTGCATCTTATAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476681" ref_strand="+" ref_description="SGN-E476681 [cSTB-45-L11]">
      <seq>gcgatttgcgagagattttgaagaaatgaggctaagcttcattcgacccatttcatgttgctctgtttcatctccagctacctcactgaaacttcaaaaaccgctctttttaaggccacccaccttcaaagcaaccatatcagacctcaaaaaatggcacctttgggctaaatccctaacttcttctgtgggttccactttcttggaactggacaatggtccagactccgaattgttgctcagagagctaaattggcttgttgaagatgcaattcaaacacccaaatcgttcttgcaacaaccccaaaaaaattacaatgataatagctctgtttcaattcgggcgtctttggaagaactatatatgttgtggaaacaaagggtagaagaaagaaggccatttcagtatgtggttggttgtgaacattggagggatttggttttgagtgttcaagaaggggttttgattccaaggccagagactgagctgattgtggaccttgtggatgatgctattaaggagaatgaggagttgagggaaggattgtgggctgatttggggactggaagtggtgcacttgctattgggattgcaaggattttgggtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="81094" stop="79887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80794" g_stop="80186" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="609" r_length="609" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E476681" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E476681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80794" e_stop="80186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACCTGCCTGTG-TGTCGAAGAAAATGAAGTTGAGCTTCATTCGACCAATTTCATGTTGCTCTGTTTCATCTCCAGCAACCTCAGTGAAACCTCAAAAACCTATATTTTTAAGGCCACCCACCTTCAAAACAACCATATCAGACCTTCAAAAATGGCATCATTGGGCTAAATCCCTAATTTCTTCTGTGGGTTCCACTTTCTTGGAACTGGACAATGGTCCAGACTCCGAATTGTTGCTCAGGGAGCTAAATTGGCTTGTTGAAGATGCAATTGAAACACCAAAATCTTTCTTGCAACAACCCCACAAAAATTACAATGATAATAGCTCAGTTGCAGTTCGGGCGTCTTTGGAACAACTGTATATGTTGTGGAAACGAAGGGTAGAAGAAAGAATGCCATTTCAGTATGTGGTTGGCTGTGAACATTGGAGGGATTTGGTTTTGAGTGTTCAAGAAGGGGTTTTGATTCCAAGGCCAGAGACTGAGCTGATTGTGGACCTTGTCGATGATGCTATTAAGGAGAATGGGGAATTGAGGGAAGGATTGTGGGCTGATTTGGGGACTGGAAGTGGTGCACTTGCTATTGGGATTGCAAGGATTTTGGGTAC</genome_strand>
        <mrna_strand>GCGATTTGCGAGAGATTTTGAAG-AAATGAGGCTAAGCTTCATTCGACCCATTTCATGTTGCTCTGTTTCATCTCCAGCTACCTCACTGAAACTTCAAAAACCGCTCTTTTTAAGGCCACCCACCTTCAAAGCAACCATATCAGACCTCAAAAAATGGCACCTTTGGGCTAAATCCCTAACTTCTTCTGTGGGTTCCACTTTCTTGGAACTGGACAATGGTCCAGACTCCGAATTGTTGCTCAGAGAGCTAAATTGGCTTGTTGAAGATGCAATTCAAACACCCAAATCGTTCTTGCAACAACCCCAAAAAAATTACAATGATAATAGCTCTGTTTCAATTCGGGCGTCTTTGGAAGAACTATATATGTTGTGGAAACAAAGGGTAGAAGAAAGAAGGCCATTTCAGTATGTGGTTGGTTGTGAACATTGGAGGGATTTGGTTTTGAGTGTTCAAGAAGGGGTTTTGATTCCAAGGCCAGAGACTGAGCTGATTGTGGACCTTGTGGATGATGCTATTAAGGAGAATGAGGAGTTGAGGGAAGGATTGTGGGCTGATTTGGGGACTGGAAGTGGTGCACTTGCTATTGGGATTGCAAGGATTTTGGGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476542" ref_strand="+" ref_description="SGN-E476542 [cSTB-45-A10]">
      <seq>gcgatttgcgagagattttgaagaaatgaggctaagcttcattcgacccattgcatgttgctctgtttcatctccagctacctcactgaaacttcaaaaaccgctctttttaaggccacccaccttcaaagcaaccatatcagacctcaaaaaatggcacctttgggctaaatccctaacttcttctgtgggttccactttcttggaactggacaatggtccagactccgaattgttgctcagagagctaaattggcttgttgaagatgcaattcaaacacccaaatcgttcttgcaacaaccccaaaaaaattacaatgataatagctctgtttcaattcgggcgtctttggaagaactatatatgttgtggaaacaaagggtagaagaaagaaggccatttcagtatgtggttggttgtgaacattggagggatttggttttgagtgttcaagaaggggttttgattccaaggccagagactgagctgattgtggaccttgtggatgatgctattaaggagaatgaggagttgagggaaggattgtgggctgatttggggactggaagtggtgcacttgctattgggattgcaaggattttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="81094" stop="79889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80794" g_stop="80189" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="606" r_length="606" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E476542" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E476542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80794" e_stop="80189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACCTGCCTGTG-TGTCGAAGAAAATGAAGTTGAGCTTCATTCGACCAATTTCATGTTGCTCTGTTTCATCTCCAGCAACCTCAGTGAAACCTCAAAAACCTATATTTTTAAGGCCACCCACCTTCAAAACAACCATATCAGACCTTCAAAAATGGCATCATTGGGCTAAATCCCTAATTTCTTCTGTGGGTTCCACTTTCTTGGAACTGGACAATGGTCCAGACTCCGAATTGTTGCTCAGGGAGCTAAATTGGCTTGTTGAAGATGCAATTGAAACACCAAAATCTTTCTTGCAACAACCCCACAAAAATTACAATGATAATAGCTCAGTTGCAGTTCGGGCGTCTTTGGAACAACTGTATATGTTGTGGAAACGAAGGGTAGAAGAAAGAATGCCATTTCAGTATGTGGTTGGCTGTGAACATTGGAGGGATTTGGTTTTGAGTGTTCAAGAAGGGGTTTTGATTCCAAGGCCAGAGACTGAGCTGATTGTGGACCTTGTCGATGATGCTATTAAGGAGAATGGGGAATTGAGGGAAGGATTGTGGGCTGATTTGGGGACTGGAAGTGGTGCACTTGCTATTGGGATTGCAAGGATTTTGGG</genome_strand>
        <mrna_strand>GCGATTTGCGAGAGATTTTGAAG-AAATGAGGCTAAGCTTCATTCGACCCATTGCATGTTGCTCTGTTTCATCTCCAGCTACCTCACTGAAACTTCAAAAACCGCTCTTTTTAAGGCCACCCACCTTCAAAGCAACCATATCAGACCTCAAAAAATGGCACCTTTGGGCTAAATCCCTAACTTCTTCTGTGGGTTCCACTTTCTTGGAACTGGACAATGGTCCAGACTCCGAATTGTTGCTCAGAGAGCTAAATTGGCTTGTTGAAGATGCAATTCAAACACCCAAATCGTTCTTGCAACAACCCCAAAAAAATTACAATGATAATAGCTCTGTTTCAATTCGGGCGTCTTTGGAAGAACTATATATGTTGTGGAAACAAAGGGTAGAAGAAAGAAGGCCATTTCAGTATGTGGTTGGTTGTGAACATTGGAGGGATTTGGTTTTGAGTGTTCAAGAAGGGGTTTTGATTCCAAGGCCAGAGACTGAGCTGATTGTGGACCTTGTGGATGATGCTATTAAGGAGAATGAGGAGTTGAGGGAAGGATTGTGGGCTGATTTGGGGACTGGAAGTGGTGCACTTGCTATTGGGATTGCAAGGATTTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469327" ref_strand="+" ref_description="SGN-E469327 [cSTB-11-A18]">
      <seq>gcgatttgcgagagattttgaagaaatgaggctaagcttcattcgacccatttcatgttgctctgtttcatctccagctacctcactgaaacttcaaaaaccgctctttttaaggccacccaccttcaaagcaaccatatcagacctcaaaaaatggcacctttgggctaaatccctaacttcttctgtgggttccactttcttggaactggacaatggtccagactccgaattgttgctcagagagctaaattggcttgttgaagatgcaattcaaacacccaaatcgttcttgcaacaaccccaaaaaaattacaatgataatagctctgtttcaattcgggcgtctttggaagaactatatatgttgtggaaacaaagggtagaagaaagaaggccatttcagtatgtggttggttgtgaacattggagggatttggttttgagtgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="81094" stop="80043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80794" g_stop="80343" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E469327" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E469327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80794" e_stop="80343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACCTGCCTGTG-TGTCGAAGAAAATGAAGTTGAGCTTCATTCGACCAATTTCATGTTGCTCTGTTTCATCTCCAGCAACCTCAGTGAAACCTCAAAAACCTATATTTTTAAGGCCACCCACCTTCAAAACAACCATATCAGACCTTCAAAAATGGCATCATTGGGCTAAATCCCTAATTTCTTCTGTGGGTTCCACTTTCTTGGAACTGGACAATGGTCCAGACTCCGAATTGTTGCTCAGGGAGCTAAATTGGCTTGTTGAAGATGCAATTGAAACACCAAAATCTTTCTTGCAACAACCCCACAAAAATTACAATGATAATAGCTCAGTTGCAGTTCGGGCGTCTTTGGAACAACTGTATATGTTGTGGAAACGAAGGGTAGAAGAAAGAATGCCATTTCAGTATGTGGTTGGCTGTGAACATTGGAGGGATTTGGTTTTGAGTGTTC</genome_strand>
        <mrna_strand>GCGATTTGCGAGAGATTTTGAAG-AAATGAGGCTAAGCTTCATTCGACCCATTTCATGTTGCTCTGTTTCATCTCCAGCTACCTCACTGAAACTTCAAAAACCGCTCTTTTTAAGGCCACCCACCTTCAAAGCAACCATATCAGACCTCAAAAAATGGCACCTTTGGGCTAAATCCCTAACTTCTTCTGTGGGTTCCACTTTCTTGGAACTGGACAATGGTCCAGACTCCGAATTGTTGCTCAGAGAGCTAAATTGGCTTGTTGAAGATGCAATTCAAACACCCAAATCGTTCTTGCAACAACCCCAAAAAAATTACAATGATAATAGCTCTGTTTCAATTCGGGCGTCTTTGGAAGAACTATATATGTTGTGGAAACAAAGGGTAGAAGAAAGAAGGCCATTTCAGTATGTGGTTGGTTGTGAACATTGGAGGGATTTGGTTTTGAGTGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337635" ref_strand="+" ref_description="SGN-E337635 [cTOE-11-H12]">
      <seq>ccgctactcctgctcagttctggccagtgatcagtgctcgctcccgagttacccctgttaagagtgcaccacctggacttagcctcctcttcttccgctctctctgctaacttgcgcatctcacctacccgattgtctcctctccgacgatctcttgcattgacctctccgtccgttgctggaaagccacttttctgctcccacccgcatcagaggaactcagtgttgagtacaaatttctcgagatctcagttcagaaccaaatcatcaatggctgagacagtgtctggggaaagtaaagcggaagtgaaagtgtaccgattccgatgaggaacttgctgtggctctagcgaagtacactgctgatttatcggagaaattttgtaaggagagagatgtttttactgtggttgtttccggtggttcacttatcaagtctctcaggaaattggtggagccaccatatattgattcaatagactggtccaaatggcacgttttctgggtggatgagagagtggttccaaaggatcatcctgacagcaattatttgcttgcttatgatggttttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="80713" stop="83957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81013" g_stop="81073" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81074" i_stop="83075" i_length="2002">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.782" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83076" g_stop="83454" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="444" r_length="382" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83455" i_stop="83527" i_length="73">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83528" g_stop="83657" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="574" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E337635" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81013" e_stop="81073"/>
          <exon e_start="83076" e_stop="83454"/>
          <exon e_start="83528" e_stop="83657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCTACTCCTGCTCAGTTCTGGCCAGTGATCAGTGCTCGCTCCCGAGTTA-CGCTGTTAAGGTCAGCGTCCCAACTCTCATCTGAAAATATTTATTTTCATGGTAATTTGATAATGGAATCTGACGCTATAAACAATTTTTCAATGACTTGGTTGGAAGGTTGTTTTTTAAGACTTATAATTTGCTAATTAGAGGCTACTTCTCCTGTAACTTGTAAGCTTTGAGGAAGAATTTAGTGACGTCTACATTTGTAACATTCCTCTGTAGTATTAATCATGTATCTTACTTATTCTTCGAATGTTCATATGAAGCTACGAAGTTGCTATGCACATATATTATAGTACATGAAAAATGATCCTCCAACTGCACTTAAGAAAAGGAAAGAAAGGGCCGTGTTTTTGTAATGAATATGTGCATAGAGTCAAAGGATGAATGTATCTGATTCTAAGTTGTCTGCTACTGTGAATGGGCGTGATTGTGAAGTAGTTAGCCAAGTTTGGTTGCCACATTGGATTTTCCACTAGCCAAGTTTGGGTTTTGCTCAAGAATGCTTGCTTTGCAAAAGAAAATAAACTGTTAGCTTAGCTTGTTTGGTGTTAAAACTATAATAATGCCTTTTTTTTTTTTTGGTTCCTTGTATCTGTTAAAAAAAGGGAGATGTACTTAAAACATAAAAAAGTGAGCAAAAGTGATTGAATTTTGAAAATGTACCCTATTTATTAAATTTGGTTAAACCGAAAATCGAACCAAAATAAACCAAACCGAAATTGTAATAACCGAACCGAACTTATTTCAGTTTGGTTTGGTTTCACATTTTTGCCAAACTGAAAATAAAATAACCGAACTGACCGAACGCCCACTCCTAACCCTCGATTATTAATGATGAAACAATAGTTTATTTGGAGAAATCAAAGAAGAAGACTAGGAAACTGCCAAGTGGAGATGTGCACTAGTGGCTTATGTGATGGAAGACCTCCCAGGGTATAACTTCGTGAACAAATATATCAGTAAGAACGGGGAAACATTGCTCAACCTGATCTATATCGGTATGAAGATGGGTACTATATTATCAAATTTCCAAACATGGAGAATATGCAGGAGGTATTGTATACTAGACCTCATACTATAAATAAAAGGTTATTTTAAACAATGATCTGCTGATTTTACTTTCACTAAGGAGTATACTTAAATACCACATGGTTTAATTTTCCCAATTTGCCTATGAACTGCTGGAGTTGCAACTCTTTCAGACGCATTGCTAGTGCTATTGGAAAACCTATATATGTTGATGAGTGTACCACCAAACAAACTAGAATATCATATGCAAGGACGTTGATTGAGACAAATTTAACCAAACCTCTCTCAGAGGAAATTACAGTGCATGAGCCTAATGGAAGACAGTGTGTACAAAAAGTATGGTTTGATTGGAAGCCCAGTTCTGCAATTCTTGCTTGAAAATAGGTCATGACTGTTACACCTATCCTCAAATGAGACAATATTATGAAGATGTACCTCAGATTGTAAAGTCATAATTTTAGCAACCAAAAAGAAGGAAAGGCCTCAGAAATTGGTACAAAAATGGCAACCAAGAGGTCAACCAGTGGAGGTAACAGAGCCATTACCTAGTGTAGTACCTAGAAACTCAACTAGAATTATAAACAATGGGACTATAGCAAAAGAGACTACATCGGGAAGTCATAAATCAATCTATTCATCCTCAAAGGGGAGTTCTCTTAAGGTAAAACATGAAGATAAATGGAAAGGTATAAAATCATTTTTAAAATTATATATATGATGTCGGGTTGGTTTGTTCTTGGTTTGACATTTTAAAGTTAAACCGACCCAACGCAAAACGGTCAATTTTTTTTCTTCAATACCAAGCCAAGTCAAACCAAATTGCTAATGGTTTTCTTTTCTCGATTTACGAATTGGTGCAGTGTTCGATTCAATTTTGTTCACCCCTTGCTGTGACAACATCAAGAAAATATATACCATGCAATAATATTTTTTTTCATCGGAAACTTACACTAATACATTTATAATATAGTTTTATTACATGGCAGAGTGCA-CA-CTGGACTTAGCCTCCTCTTCTTCCGCTCTCTCTGCTAACTTGCGCATCTCACCTACCCGATTGTCTCCTCTCCGACGATCTCTTGCATTGACCTCTCCGTCCGTTGCTGGAAAGCCACTTTTCTGCTCCCACCCGCATCAGAGGAACTCAGTGTTGAGTACAAATTTCTCGAGATCTCAGTTCAGAACCAAATCATCAATGGCTGAGACAGTGTCTGGGGAAAGTAAAGCGGAAGTGAAAGTGTA-CGATTCCGATGAGGAACTTGCTGTGGCTCTAGCGAAGTACACTGCTGATTTATCGGAGAAATTTTGTAAGGAGAGAGATGTTTTTACTGTGGTTGTTTCCGGTGGTTCACTTATCAAGTCTCTCAGGTATGATTGATTAATTCTCTTTGTTTCTTCTATGAATTGGGGAATTTTTTTGGGTTGCTAATGTTTATTGCAGGAAATTGGTGGAGCCACCATATATTGATTCAATAGACTGGTCCAAATGGCACGTTTTCTGGGTGGATGAGAGAGTGGTTCCAAAGGATCATCCTGACAGCAATTATTTGCTTGCTTATGATGGTTTTCTA</genome_strand>
        <mrna_strand>CCGCTACTCCTGCTCAGTTCTGGCCAGTGATCAGTGCTCGCTCCCGAGTTACCCCTGTTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCACCACCTGGACTTAGCCTCCTCTTCTTCCGCTCTCTCTGCTAACTTGCGCATCTCACCTACCCGATTGTCTCCTCTCCGACGATCTCTTGCATTGACCTCTCCGTCCGTTGCTGGAAAGCCACTTTTCTGCTCCCACCCGCATCAGAGGAACTCAGTGTTGAGTACAAATTTCTCGAGATCTCAGTTCAGAACCAAATCATCAATGGCTGAGACAGTGTCTGGGGAAAGTAAAGCGGAAGTGAAAGTGTACCGATTCCGATGAGGAACTTGCTGTGGCTCTAGCGAAGTACACTGCTGATTTATCGGAGAAATTTTGTAAGGAGAGAGATGTTTTTACTGTGGTTGTTTCCGGTGGTTCACTTATCAAGTCTCTCAG.........................................................................GAAATTGGTGGAGCCACCATATATTGATTCAATAGACTGGTCCAAATGGCACGTTTTCTGGGTGGATGAGAGAGTGGTTCCAAAGGATCATCCTGACAGCAATTATTTGCTTGCTTATGATGGTTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719996" ref_strand="+" ref_description="SGN-E719996 [FC09CA11]">
      <seq>gaacttacactaatccatttataatatagttttattacatggcagagtgcacactggacttagcctcctcttcttccgctctctctgctaacttgcgcatctcacctacccgattgtctcctctccgacgatctcttgcattgacctctccgtccgttgctggaaagccacttttctgctcccacccgcatcagaggaactcagtgttgagtacaaatttctcgagatctcagttcaaaaccaaatcatcaatggctgagacagtgtctggggaaagtaaagcggaagtgaaagtgtacgattccgatgaggaacttgctgtggctctagcgaagtacactgctgatttatcggagaaattttgtaaggagagagatgtttttactgtggttgtttccggtggttcacttatcaagtctctcaggaaattggtggagccaccatatattgattcaatagactggtccaaatggcacgttttctgggtggatgagagagtggttccaaaggatcatcctgacagcaattatttgcttgcttatgatggttttctatccaagatacctattcctgctggtaatgtgcatgccataaatgatgcattatcagcagaggctgcggcagatgattacgagacttgtctaaggcacttagtcaagagcaagatacttgacatctctgaagagagtgggtttccaaaatttgatgtaatgctattgggtatgggtccagacggacatgtagcttccttgtttcccgggcatcctcttgtccatgagaaagcgaagtgggtcaccttcatcaaggattctccaaaacctccaccgaacaggattacatttacattccctgtaataaactcatctgcaaatattgcacttgctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="82732" stop="85957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83031" g_stop="83454" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83455" i_stop="83527" i_length="73">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83528" g_stop="83663" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="560" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83664" i_stop="85331" i_length="1668">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85332" g_stop="85657" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="886" r_length="326" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E719996" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>886</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83031" e_stop="83454"/>
          <exon e_start="83528" e_stop="83663"/>
          <exon e_start="85332" e_stop="85657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTACACTAATACATTTATAATATAGTTTTATTACATGGCAGAGTGCACACTGGACTTAGCCTCCTCTTCTTCCGCTCTCTCTGCTAACTTGCGCATCTCACCTACCCGATTGTCTCCTCTCCGACGATCTCTTGCATTGACCTCTCCGTCCGTTGCTGGAAAGCCACTTTTCTGCTCCCACCCGCATCAGAGGAACTCAGTGTTGAGTACAAATTTCTCGAGATCTCAGTTCAGAACCAAATCATCAATGGCTGAGACAGTGTCTGGGGAAAGTAAAGCGGAAGTGAAAGTGTACGATTCCGATGAGGAACTTGCTGTGGCTCTAGCGAAGTACACTGCTGATTTATCGGAGAAATTTTGTAAGGAGAGAGATGTTTTTACTGTGGTTGTTTCCGGTGGTTCACTTATCAAGTCTCTCAGGTATGATTGATTAATTCTCTTTGTTTCTTCTATGAATTGGGGAATTTTTTTGGGTTGCTAATGTTTATTGCAGGAAATTGGTGGAGCCACCATATATTGATTCAATAGACTGGTCCAAATGGCACGTTTTCTGGGTGGATGAGAGAGTGGTTCCAAAGGATCATCCTGACAGCAATTATTTGCTTGCTTATGATGGTTTTCTATCCAAGGTATATTTGCAGCCCTTCCTACAACATATTGATTTTATTTACTGCTGCCACAGTGTGTACTGTGTAGTTTCTTCATTAGCTTTCTACCCATTATATTTCACCTCTCCTCTGTGTATTTGTTGTTTTACCCCAACTTTTCTGATCTTTTGCTTGTTTGCCCAGTCAAAATGTGGGACGCAGTAGGTTTCTTGTACTAGTGATTTCTTCTCATCTGTTCAGTTAGATACCCCAAAGTACTAGTAGACATGCCCAGACAGCAGGTTATAAAAAAAAGTTAATCTTTTAAGTTTATCTTTTTTTTCTAGTTACGAGCAATGCTGATGGTCTCAATCTCCTTAACAAATAAGTTATAGGGGGTGGGGGGATGTGAACAGAGATTAAAGTGCACAGTATTGATGGAGAATACATCTAGAGGTATTCAGATTCTCATTCAACTCTGGATGAAATATTTGGGAAAATCAATTGAGAAAGTAATTATGTGAGGGCGTTAGGGCAGCGGTAACAAGGAATGCAAGTCATGCATACTATAAACATATCTTTTTCCGCAGTCCTTGAGATTAAGAAGTTAAGTAAGATAAGCCTGCTAATATATGGACGGAAGAAACAATCTCTACCTATATATATATATACATATTTGGGGGTGGTTTGGTTATATGTGACAAAGTCAAGCAATCTGTTTACATGATCATATCTATCATGGACCCAACTGTGCGAAGAAGCTGTATGTTAAATAAGTTTTAGATTACATTTTCTTAAGATATGTGATGATGTTACGCAATTCATGTAAAAACAAGAAACTAAAAAGAAAATCTTTGCACTGTATTGGAATAAACAGCTTCAAATTCACTTTTTTTTTTAGAAAACATTAAATTTTGCTTTGGTTAACAAAATTCTGATATAAAATTACTTCTTATAGAATCTGTCAGCCCCTGAAGCCCTCCTTAAACAACAACTGAGGTCCTTCTATTATTTTGTGTGTGTGGGGGGGGGGGGGGGGGTTATATTAAAATGATGGAGCATTAGCAAAATACTTCAAACATTTACCATGGTAGAGATTACTTAATGAGAAAGGATTTGGAAATTTTTGGGGCTAGAAGAGTTAAGCGGGGTTGAGGTTTAGAGGATCAACTGAAAAGTAATTATAACTTAAGCACAATTGTCAATTGAGCATGTTGGGAAACTTAAAGAGCAAAGAGTGTCCAACTCAATACCATGTGGAGCTGCCGATAAGATCAGTTGGACATTTTATGTTGACTTCGGTGAATTCCTTTTAATATAAGGATGAATAAGTGGGTTTGAATTACACCCTCAATGTTAACCTACTTACTTTCAGTTAAGTCTCTTCATTATCTCTAACAAGTTGGGTTGCCTTTACTTCTTGATTCTTACTTGGCAGTCTGACCAGCTCTTAAGCACAGACTATTTAAATAAAGATGGTTGTGAACTAAATTTATCCAATTTGTATCAGAAAAGATGTTTAGTGATGCATAGCTGCAAGGGCATCTTTTTGGATTTCAAATTGCTCATAGTACTGGCTTCACATGTGAACTGCCTACATTGTTTGATCTTATTATGAATGATGATAATTCTTACTTCATCATTATTCTCAGTTGACATCTTTAATTCTTTCTACCAAACTTCTAACCTCATCTTTACTTCTCTTGGCAGATACCTATTCCTGCTGGTAATGTGCATGCCATAAATGATGCATTATCAGCAGAGGCTGCGGCAGATGATTACGAGACTTGTCTAAGGCACTTAGTCAAGAGCAAGATACTTGACATCTCTGAAGAGAGTGGGTTTCCAAAATTTGATGTAATGCTATTGGGTATGGGTCCAGACGGACATGTAGCTTCCTTGTTTCCCGGGCATCCTCTTGTCCATGAGAAAGCGAAGTGGGTCACCTTCATCAAGGATTCTCCAAAACCTCCACCGAACAGGATTACATTTACATTCCCTGTAATAAACTCATCTGCAAATATTGCACTTGCTAT</genome_strand>
        <mrna_strand>GAACTTACACTAATCCATTTATAATATAGTTTTATTACATGGCAGAGTGCACACTGGACTTAGCCTCCTCTTCTTCCGCTCTCTCTGCTAACTTGCGCATCTCACCTACCCGATTGTCTCCTCTCCGACGATCTCTTGCATTGACCTCTCCGTCCGTTGCTGGAAAGCCACTTTTCTGCTCCCACCCGCATCAGAGGAACTCAGTGTTGAGTACAAATTTCTCGAGATCTCAGTTCAAAACCAAATCATCAATGGCTGAGACAGTGTCTGGGGAAAGTAAAGCGGAAGTGAAAGTGTACGATTCCGATGAGGAACTTGCTGTGGCTCTAGCGAAGTACACTGCTGATTTATCGGAGAAATTTTGTAAGGAGAGAGATGTTTTTACTGTGGTTGTTTCCGGTGGTTCACTTATCAAGTCTCTCAG.........................................................................GAAATTGGTGGAGCCACCATATATTGATTCAATAGACTGGTCCAAATGGCACGTTTTCTGGGTGGATGAGAGAGTGGTTCCAAAGGATCATCCTGACAGCAATTATTTGCTTGCTTATGATGGTTTTCTATCCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCTATTCCTGCTGGTAATGTGCATGCCATAAATGATGCATTATCAGCAGAGGCTGCGGCAGATGATTACGAGACTTGTCTAAGGCACTTAGTCAAGAGCAAGATACTTGACATCTCTGAAGAGAGTGGGTTTCCAAAATTTGATGTAATGCTATTGGGTATGGGTCCAGACGGACATGTAGCTTCCTTGTTTCCCGGGCATCCTCTTGTCCATGAGAAAGCGAAGTGGGTCACCTTCATCAAGGATTCTCCAAAACCTCCACCGAACAGGATTACATTTACATTCCCTGTAATAAACTCATCTGCAAATATTGCACTTGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449039" ref_strand="+" ref_description="SGN-E449039 [cSTS-5-M17]">
      <seq>agcaattgttggacgcaaggccaatggacaagtctcttcattcttatttaacatggcagagtgcgcactgaacttagcttcctctcctcccgctctctctgctaacttgcgcatctcacctaccagattctctcctctccgacgaacccttccgttgacctctccgtccgttgctggaaagccacttttctgctcccacctgcatcggagaaactcagtgttgagtacaaattcctcgagatctcagttcagaacaaaatcatcaatggctgagaaagtgaccgggaaaagtaaagcggaagtgaaagtgtacgattccgaggaggaacttgctgtggctctagcgaagtacactgcggatttatcggagaaattttgtaaggagagagatgcttttactgtggttgtttccggtggttcacttatcaagtctctcaggaaattggtggagccaccatatattgattcaatagactggtccaaatggcacgttttctgggtggatgagagagtggttccaaaggatcatcctgacagcaattatttgcttgcttatgatggttttctatccaagatacctattcctgctggtcatgtgtatgccataaatgatgcattatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="82760" stop="85678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83060" g_stop="83454" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="438" r_length="395" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83455" i_stop="83527" i_length="73">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83528" g_stop="83663" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="574" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83664" i_stop="85331" i_length="1668">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85332" g_stop="85378" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="621" r_length="47" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E449039" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83060" e_stop="83454"/>
          <exon e_start="83528" e_stop="83663"/>
          <exon e_start="85332" e_stop="85378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTACATGGCAGAGTGCACACTGGACTTAGCCTCCTCTTCTTCCGCTCTCTCTGCTAACTTGCGCATCTCACCTACCCGATTGTCTCCTCTCCGACGATCTCTTGCATTGACCTCTCCGTCCGTTGCTGGAAAGCCACTTTTCTGCTCCCACCCGCATCAGAGGAACTCAGTGTTGAGTACAAATTTCTCGAGATCTCAGTTCAGAACCAAATCATCAATGGCTGAGACAGTGTCTGGGGAAAGTAAAGCGGAAGTGAAAGTGTACGATTCCGATGAGGAACTTGCTGTGGCTCTAGCGAAGTACACTGCTGATTTATCGGAGAAATTTTGTAAGGAGAGAGATGTTTTTACTGTGGTTGTTTCCGGTGGTTCACTTATCAAGTCTCTCAGGTATGATTGATTAATTCTCTTTGTTTCTTCTATGAATTGGGGAATTTTTTTGGGTTGCTAATGTTTATTGCAGGAAATTGGTGGAGCCACCATATATTGATTCAATAGACTGGTCCAAATGGCACGTTTTCTGGGTGGATGAGAGAGTGGTTCCAAAGGATCATCCTGACAGCAATTATTTGCTTGCTTATGATGGTTTTCTATCCAAGGTATATTTGCAGCCCTTCCTACAACATATTGATTTTATTTACTGCTGCCACAGTGTGTACTGTGTAGTTTCTTCATTAGCTTTCTACCCATTATATTTCACCTCTCCTCTGTGTATTTGTTGTTTTACCCCAACTTTTCTGATCTTTTGCTTGTTTGCCCAGTCAAAATGTGGGACGCAGTAGGTTTCTTGTACTAGTGATTTCTTCTCATCTGTTCAGTTAGATACCCCAAAGTACTAGTAGACATGCCCAGACAGCAGGTTATAAAAAAAAGTTAATCTTTTAAGTTTATCTTTTTTTTCTAGTTACGAGCAATGCTGATGGTCTCAATCTCCTTAACAAATAAGTTATAGGGGGTGGGGGGATGTGAACAGAGATTAAAGTGCACAGTATTGATGGAGAATACATCTAGAGGTATTCAGATTCTCATTCAACTCTGGATGAAATATTTGGGAAAATCAATTGAGAAAGTAATTATGTGAGGGCGTTAGGGCAGCGGTAACAAGGAATGCAAGTCATGCATACTATAAACATATCTTTTTCCGCAGTCCTTGAGATTAAGAAGTTAAGTAAGATAAGCCTGCTAATATATGGACGGAAGAAACAATCTCTACCTATATATATATATACATATTTGGGGGTGGTTTGGTTATATGTGACAAAGTCAAGCAATCTGTTTACATGATCATATCTATCATGGACCCAACTGTGCGAAGAAGCTGTATGTTAAATAAGTTTTAGATTACATTTTCTTAAGATATGTGATGATGTTACGCAATTCATGTAAAAACAAGAAACTAAAAAGAAAATCTTTGCACTGTATTGGAATAAACAGCTTCAAATTCACTTTTTTTTTTAGAAAACATTAAATTTTGCTTTGGTTAACAAAATTCTGATATAAAATTACTTCTTATAGAATCTGTCAGCCCCTGAAGCCCTCCTTAAACAACAACTGAGGTCCTTCTATTATTTTGTGTGTGTGGGGGGGGGGGGGGGGGTTATATTAAAATGATGGAGCATTAGCAAAATACTTCAAACATTTACCATGGTAGAGATTACTTAATGAGAAAGGATTTGGAAATTTTTGGGGCTAGAAGAGTTAAGCGGGGTTGAGGTTTAGAGGATCAACTGAAAAGTAATTATAACTTAAGCACAATTGTCAATTGAGCATGTTGGGAAACTTAAAGAGCAAAGAGTGTCCAACTCAATACCATGTGGAGCTGCCGATAAGATCAGTTGGACATTTTATGTTGACTTCGGTGAATTCCTTTTAATATAAGGATGAATAAGTGGGTTTGAATTACACCCTCAATGTTAACCTACTTACTTTCAGTTAAGTCTCTTCATTATCTCTAACAAGTTGGGTTGCCTTTACTTCTTGATTCTTACTTGGCAGTCTGACCAGCTCTTAAGCACAGACTATTTAAATAAAGATGGTTGTGAACTAAATTTATCCAATTTGTATCAGAAAAGATGTTTAGTGATGCATAGCTGCAAGGGCATCTTTTTGGATTTCAAATTGCTCATAGTACTGGCTTCACATGTGAACTGCCTACATTGTTTGATCTTATTATGAATGATGATAATTCTTACTTCATCATTATTCTCAGTTGACATCTTTAATTCTTTCTACCAAACTTCTAACCTCATCTTTACTTCTCTTGGCAGATACCTATTCCTGCTGGTAATGTGCATGCCATAAATGATGCATTATC</genome_strand>
        <mrna_strand>TTATTTAACATGGCAGAGTGCGCACTGAACTTAGCTTCCTCTCCTCCCGCTCTCTCTGCTAACTTGCGCATCTCACCTACCAGATTCTCTCCTCTCCGACGAACCCTTCCGTTGACCTCTCCGTCCGTTGCTGGAAAGCCACTTTTCTGCTCCCACCTGCATCGGAGAAACTCAGTGTTGAGTACAAATTCCTCGAGATCTCAGTTCAGAACAAAATCATCAATGGCTGAGAAAGTGACCGGGAAAAGTAAAGCGGAAGTGAAAGTGTACGATTCCGAGGAGGAACTTGCTGTGGCTCTAGCGAAGTACACTGCGGATTTATCGGAGAAATTTTGTAAGGAGAGAGATGCTTTTACTGTGGTTGTTTCCGGTGGTTCACTTATCAAGTCTCTCAG.........................................................................GAAATTGGTGGAGCCACCATATATTGATTCAATAGACTGGTCCAAATGGCACGTTTTCTGGGTGGATGAGAGAGTGGTTCCAAAGGATCATCCTGACAGCAATTATTTGCTTGCTTATGATGGTTTTCTATCCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCTATTCCTGCTGGTCATGTGTATGCCATAAATGATGCATTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448165" ref_strand="+" ref_description="SGN-E448165 [cSTS-1-N10]">
      <seq>caattgttggacgcaaggccaatggacaagtctcttcattcttatttaacatggcagagtgcgcactgaacttagcttcctctcctcccgctctctctgctaacttgcgcatctcacctaccagattctctcctctccgacgaacccttccgttgacctctccgtccgttgctggaaagccacttttctgctcccacctgcatcggagaaactcagtgttgagtacaaattcctcgagatctcagttcagaacaaaatcatcaatggctgagaaagtgaccgggaaaagtaaagcggaagtgaaagtgtacgattccgaggaggaacttgctgtggctctagcgaagtacactgcggatttatcggagaaattttgtaaggagagagatgcttttactgtggttgtttccggtggttcacttatcaagtctctcaggaaattggtggagccaccatatattgattcaatagactggtccaaatggcacgttttctgggtggatgagagagtggttccaaaagatcatcctgacagcaattatttgcttgcttatgatggttttctatccaagatacctattcctgctggtcatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="82760" stop="85655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83060" g_stop="83454" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="436" r_length="395" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83455" i_stop="83527" i_length="73">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83528" g_stop="83663" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="572" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83664" i_stop="85331" i_length="1668">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85332" g_stop="85355" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="596" r_length="24" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E448165" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83060" e_stop="83454"/>
          <exon e_start="83528" e_stop="83663"/>
          <exon e_start="85332" e_stop="85355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTACATGGCAGAGTGCACACTGGACTTAGCCTCCTCTTCTTCCGCTCTCTCTGCTAACTTGCGCATCTCACCTACCCGATTGTCTCCTCTCCGACGATCTCTTGCATTGACCTCTCCGTCCGTTGCTGGAAAGCCACTTTTCTGCTCCCACCCGCATCAGAGGAACTCAGTGTTGAGTACAAATTTCTCGAGATCTCAGTTCAGAACCAAATCATCAATGGCTGAGACAGTGTCTGGGGAAAGTAAAGCGGAAGTGAAAGTGTACGATTCCGATGAGGAACTTGCTGTGGCTCTAGCGAAGTACACTGCTGATTTATCGGAGAAATTTTGTAAGGAGAGAGATGTTTTTACTGTGGTTGTTTCCGGTGGTTCACTTATCAAGTCTCTCAGGTATGATTGATTAATTCTCTTTGTTTCTTCTATGAATTGGGGAATTTTTTTGGGTTGCTAATGTTTATTGCAGGAAATTGGTGGAGCCACCATATATTGATTCAATAGACTGGTCCAAATGGCACGTTTTCTGGGTGGATGAGAGAGTGGTTCCAAAGGATCATCCTGACAGCAATTATTTGCTTGCTTATGATGGTTTTCTATCCAAGGTATATTTGCAGCCCTTCCTACAACATATTGATTTTATTTACTGCTGCCACAGTGTGTACTGTGTAGTTTCTTCATTAGCTTTCTACCCATTATATTTCACCTCTCCTCTGTGTATTTGTTGTTTTACCCCAACTTTTCTGATCTTTTGCTTGTTTGCCCAGTCAAAATGTGGGACGCAGTAGGTTTCTTGTACTAGTGATTTCTTCTCATCTGTTCAGTTAGATACCCCAAAGTACTAGTAGACATGCCCAGACAGCAGGTTATAAAAAAAAGTTAATCTTTTAAGTTTATCTTTTTTTTCTAGTTACGAGCAATGCTGATGGTCTCAATCTCCTTAACAAATAAGTTATAGGGGGTGGGGGGATGTGAACAGAGATTAAAGTGCACAGTATTGATGGAGAATACATCTAGAGGTATTCAGATTCTCATTCAACTCTGGATGAAATATTTGGGAAAATCAATTGAGAAAGTAATTATGTGAGGGCGTTAGGGCAGCGGTAACAAGGAATGCAAGTCATGCATACTATAAACATATCTTTTTCCGCAGTCCTTGAGATTAAGAAGTTAAGTAAGATAAGCCTGCTAATATATGGACGGAAGAAACAATCTCTACCTATATATATATATACATATTTGGGGGTGGTTTGGTTATATGTGACAAAGTCAAGCAATCTGTTTACATGATCATATCTATCATGGACCCAACTGTGCGAAGAAGCTGTATGTTAAATAAGTTTTAGATTACATTTTCTTAAGATATGTGATGATGTTACGCAATTCATGTAAAAACAAGAAACTAAAAAGAAAATCTTTGCACTGTATTGGAATAAACAGCTTCAAATTCACTTTTTTTTTTAGAAAACATTAAATTTTGCTTTGGTTAACAAAATTCTGATATAAAATTACTTCTTATAGAATCTGTCAGCCCCTGAAGCCCTCCTTAAACAACAACTGAGGTCCTTCTATTATTTTGTGTGTGTGGGGGGGGGGGGGGGGGTTATATTAAAATGATGGAGCATTAGCAAAATACTTCAAACATTTACCATGGTAGAGATTACTTAATGAGAAAGGATTTGGAAATTTTTGGGGCTAGAAGAGTTAAGCGGGGTTGAGGTTTAGAGGATCAACTGAAAAGTAATTATAACTTAAGCACAATTGTCAATTGAGCATGTTGGGAAACTTAAAGAGCAAAGAGTGTCCAACTCAATACCATGTGGAGCTGCCGATAAGATCAGTTGGACATTTTATGTTGACTTCGGTGAATTCCTTTTAATATAAGGATGAATAAGTGGGTTTGAATTACACCCTCAATGTTAACCTACTTACTTTCAGTTAAGTCTCTTCATTATCTCTAACAAGTTGGGTTGCCTTTACTTCTTGATTCTTACTTGGCAGTCTGACCAGCTCTTAAGCACAGACTATTTAAATAAAGATGGTTGTGAACTAAATTTATCCAATTTGTATCAGAAAAGATGTTTAGTGATGCATAGCTGCAAGGGCATCTTTTTGGATTTCAAATTGCTCATAGTACTGGCTTCACATGTGAACTGCCTACATTGTTTGATCTTATTATGAATGATGATAATTCTTACTTCATCATTATTCTCAGTTGACATCTTTAATTCTTTCTACCAAACTTCTAACCTCATCTTTACTTCTCTTGGCAGATACCTATTCCTGCTGGTAATGTG</genome_strand>
        <mrna_strand>TTATTTAACATGGCAGAGTGCGCACTGAACTTAGCTTCCTCTCCTCCCGCTCTCTCTGCTAACTTGCGCATCTCACCTACCAGATTCTCTCCTCTCCGACGAACCCTTCCGTTGACCTCTCCGTCCGTTGCTGGAAAGCCACTTTTCTGCTCCCACCTGCATCGGAGAAACTCAGTGTTGAGTACAAATTCCTCGAGATCTCAGTTCAGAACAAAATCATCAATGGCTGAGAAAGTGACCGGGAAAAGTAAAGCGGAAGTGAAAGTGTACGATTCCGAGGAGGAACTTGCTGTGGCTCTAGCGAAGTACACTGCGGATTTATCGGAGAAATTTTGTAAGGAGAGAGATGCTTTTACTGTGGTTGTTTCCGGTGGTTCACTTATCAAGTCTCTCAG.........................................................................GAAATTGGTGGAGCCACCATATATTGATTCAATAGACTGGTCCAAATGGCACGTTTTCTGGGTGGATGAGAGAGTGGTTCCAAAAGATCATCCTGACAGCAATTATTTGCTTGCTTATGATGGTTTTCTATCCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCTATTCCTGCTGGTCATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448016" ref_strand="+" ref_description="SGN-E448016 [cSTS-1-B13]">
      <seq>gttggacgcaaggccaatggacaagtctcttcattcttatttaacatggcagagtgcgcactgaacttagcttcctctcctcccgctctctctgctaacttgcgcatctcacctaccagattctctcctctccgacgaacccttccgttgacctctccgtccggtgctggaaagccacttttctgctcccacctgcatcggagaaactcagtgttgagtacaaattcctcgagatctcagttcagaacaaaatcatcaatggctgagaaagtgaccgggaaaagtaaagcggaagtgaaagtgtacgattccgaggaggaacttgctgtggctctagcgaagtacactgcggatttatcggagaaattttgtaaggagagagatgcttttactgtggttgtttccggtggttcacttatcaagtctctcaggaaattggtggagccaccatatattgattcaatagactggtccaaatggcacgttttctgggtggatgagagagtggttccaaaggatcatcctgacagcaattatttgcttgcttatgatggttttctatccaagatacctattcctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="82760" stop="83976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83060" g_stop="83454" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="431" r_length="395" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83455" i_stop="83527" i_length="73">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83528" g_stop="83663" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="567" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E448016" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83060" e_stop="83454"/>
          <exon e_start="83528" e_stop="83663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTACATGGCAGAGTGCACACTGGACTTAGCCTCCTCTTCTTCCGCTCTCTCTGCTAACTTGCGCATCTCACCTACCCGATTGTCTCCTCTCCGACGATCTCTTGCATTGACCTCTCCGTCCGTTGCTGGAAAGCCACTTTTCTGCTCCCACCCGCATCAGAGGAACTCAGTGTTGAGTACAAATTTCTCGAGATCTCAGTTCAGAACCAAATCATCAATGGCTGAGACAGTGTCTGGGGAAAGTAAAGCGGAAGTGAAAGTGTACGATTCCGATGAGGAACTTGCTGTGGCTCTAGCGAAGTACACTGCTGATTTATCGGAGAAATTTTGTAAGGAGAGAGATGTTTTTACTGTGGTTGTTTCCGGTGGTTCACTTATCAAGTCTCTCAGGTATGATTGATTAATTCTCTTTGTTTCTTCTATGAATTGGGGAATTTTTTTGGGTTGCTAATGTTTATTGCAGGAAATTGGTGGAGCCACCATATATTGATTCAATAGACTGGTCCAAATGGCACGTTTTCTGGGTGGATGAGAGAGTGGTTCCAAAGGATCATCCTGACAGCAATTATTTGCTTGCTTATGATGGTTTTCTATCCAAG</genome_strand>
        <mrna_strand>TTATTTAACATGGCAGAGTGCGCACTGAACTTAGCTTCCTCTCCTCCCGCTCTCTCTGCTAACTTGCGCATCTCACCTACCAGATTCTCTCCTCTCCGACGAACCCTTCCGTTGACCTCTCCGTCCGGTGCTGGAAAGCCACTTTTCTGCTCCCACCTGCATCGGAGAAACTCAGTGTTGAGTACAAATTCCTCGAGATCTCAGTTCAGAACAAAATCATCAATGGCTGAGAAAGTGACCGGGAAAAGTAAAGCGGAAGTGAAAGTGTACGATTCCGAGGAGGAACTTGCTGTGGCTCTAGCGAAGTACACTGCGGATTTATCGGAGAAATTTTGTAAGGAGAGAGATGCTTTTACTGTGGTTGTTTCCGGTGGTTCACTTATCAAGTCTCTCAG.........................................................................GAAATTGGTGGAGCCACCATATATTGATTCAATAGACTGGTCCAAATGGCACGTTTTCTGGGTGGATGAGAGAGTGGTTCCAAAGGATCATCCTGACAGCAATTATTTGCTTGCTTATGATGGTTTTCTATCCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437770" ref_strand="+" ref_description="SGN-E437770 [cSTA-5-A1]">
      <seq>aattgttggacgccaaggccaatggacaagtctcttcattcttatttaacatggcagagtgcgcacctgaacttagcttcctctcctcccgctctctctgctaacttgcgcatctcacctaccagattctctcctctccgacgaacccttccgttgacctctccgtccgttgctggaaagccacttttctgctcccacctgcatcggagaaactcagtgttgagtacaaattcctcgagatctcagttcagaacaaaatcatcaatggctgagaaagtgaccgggaaaagtaaagcggaagtgaaagtgtacgattccgaggaggaacttgctgtggctctagcgaagtacactgcggatttatcggagaaattttgtaaggagagagatgcttttactgtggttgtttccggtggttcacttatcaagtctctcaggaaattggtggagccaccatatattgattcaatagactggtccaaatggcacgttttctgggtggatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="82760" stop="83897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83060" g_stop="83454" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="437" r_length="396" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83455" i_stop="83527" i_length="73">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83528" g_stop="83597" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="507" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E437770" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E437770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83060" e_stop="83454"/>
          <exon e_start="83528" e_stop="83597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTACATGGCAGAGTGCACA-CTGGACTTAGCCTCCTCTTCTTCCGCTCTCTCTGCTAACTTGCGCATCTCACCTACCCGATTGTCTCCTCTCCGACGATCTCTTGCATTGACCTCTCCGTCCGTTGCTGGAAAGCCACTTTTCTGCTCCCACCCGCATCAGAGGAACTCAGTGTTGAGTACAAATTTCTCGAGATCTCAGTTCAGAACCAAATCATCAATGGCTGAGACAGTGTCTGGGGAAAGTAAAGCGGAAGTGAAAGTGTACGATTCCGATGAGGAACTTGCTGTGGCTCTAGCGAAGTACACTGCTGATTTATCGGAGAAATTTTGTAAGGAGAGAGATGTTTTTACTGTGGTTGTTTCCGGTGGTTCACTTATCAAGTCTCTCAGGTATGATTGATTAATTCTCTTTGTTTCTTCTATGAATTGGGGAATTTTTTTGGGTTGCTAATGTTTATTGCAGGAAATTGGTGGAGCCACCATATATTGATTCAATAGACTGGTCCAAATGGCACGTTTTCTGGGTGGATGAG</genome_strand>
        <mrna_strand>TTATTTAACATGGCAGAGTGCGCACCTGAACTTAGCTTCCTCTCCTCCCGCTCTCTCTGCTAACTTGCGCATCTCACCTACCAGATTCTCTCCTCTCCGACGAACCCTTCCGTTGACCTCTCCGTCCGTTGCTGGAAAGCCACTTTTCTGCTCCCACCTGCATCGGAGAAACTCAGTGTTGAGTACAAATTCCTCGAGATCTCAGTTCAGAACAAAATCATCAATGGCTGAGAAAGTGACCGGGAAAAGTAAAGCGGAAGTGAAAGTGTACGATTCCGAGGAGGAACTTGCTGTGGCTCTAGCGAAGTACACTGCGGATTTATCGGAGAAATTTTGTAAGGAGAGAGATGCTTTTACTGTGGTTGTTTCCGGTGGTTCACTTATCAAGTCTCTCAG.........................................................................GAAATTGGTGGAGCCACCATATATTGATTCAATAGACTGGTCCAAATGGCACGTTTTCTGGGTGGATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E568693" ref_strand="+" ref_description="SGN-E568693 [13016]">
      <seq>aagtctcttcattcttatttaacatggcagagtgcgcactgaacttagcttcctctcctcccggctctctctgctaacttggcgcatctcacctaccagattctctcctctccggacgaacccttccgttgacctctccgtccgttgctggaaagccacttttctgctcccacctgcatcggagaaactcagtgttgagtacaaattcctcgagatctcagttcagaacaaaatcatcaatggctgagaaagtgaccggggaaaagtaaagcggaagtgaaagtgtacgattccgaggaggaacttgctgtggctctagcgaagtacactgcggatttatcggagaaattttgtaaggagagagatgcttttactgtggttgtttccggtgngttcacttatcaagtctctcagggaaattggtggagccaccatatattgattcaatcagactggtccacatggcacgttttctgggtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="82760" stop="83893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83060" g_stop="83454" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="414" r_length="400" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83455" i_stop="83527" i_length="73">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83528" g_stop="83593" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="482" r_length="68" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E568693" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E568693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83060" e_stop="83454"/>
          <exon e_start="83528" e_stop="83593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTACATGGCAGAGTGCACACTGGACTTAGCCTCCTCTTCTTCC-GCTCTCTCTGCTAACTT-GCGCATCTCACCTACCCGATTGTCTCCTCTCC-GACGATCTCTTGCATTGACCTCTCCGTCCGTTGCTGGAAAGCCACTTTTCTGCTCCCACCCGCATCAGAGGAACTCAGTGTTGAGTACAAATTTCTCGAGATCTCAGTTCAGAACCAAATCATCAATGGCTGAGACAGTGTCTGGGG-AAAGTAAAGCGGAAGTGAAAGTGTACGATTCCGATGAGGAACTTGCTGTGGCTCTAGCGAAGTACACTGCTGATTTATCGGAGAAATTTTGTAAGGAGAGAGATGTTTTTACTGTGGTTGTTTCCGGTG-GTTCACTTATCAAGTCTCTCAGGTATGATTGATTAATTCTCTTTGTTTCTTCTATGAATTGGGGAATTTTTTTGGGTTGCTAATGTTTATTGCAG-GAAATTGGTGGAGCCACCATATATTGATTCAAT-AGACTGGTCCAAATGGCACGTTTTCTGGGTGGA</genome_strand>
        <mrna_strand>TTATTTAACATGGCAGAGTGCGCACTGAACTTAGCTTCCTCTCCTCCCGGCTCTCTCTGCTAACTTGGCGCATCTCACCTACCAGATTCTCTCCTCTCCGGACGAACCCTTCCGTTGACCTCTCCGTCCGTTGCTGGAAAGCCACTTTTCTGCTCCCACCTGCATCGGAGAAACTCAGTGTTGAGTACAAATTCCTCGAGATCTCAGTTCAGAACAAAATCATCAATGGCTGAGAAAGTGACCGGGGAAAAGTAAAGCGGAAGTGAAAGTGTACGATTCCGAGGAGGAACTTGCTGTGGCTCTAGCGAAGTACACTGCGGATTTATCGGAGAAATTTTGTAAGGAGAGAGATGCTTTTACTGTGGTTGTTTCCGGTGNGTTCACTTATCAAGTCTCTCAG.........................................................................GGAAATTGGTGGAGCCACCATATATTGATTCAATCAGACTGGTCCACATGGCACGTTTTCTGGGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336589" ref_strand="+" ref_description="SGN-E336589 [cTOE-4-I4]">
      <seq>ttttattacatggcagagtgcacactggacttagcctcctcttcttccgctctctctgctaacttgcgcatctcacctacccgattgtctcctctccgacgatctcttgcattgacctctccgtccgggctggaaagccacttttctgctcccacccgcatcagaggaactcagtgttgagtacaaatttctcgagatctcagttcagaaccaaatcatcaatggctgagacagtgtctggggaaagtaaagcggaagtgaaagtgtacgattccgatgaggaacttgctgtggctctagcgaactacactgctgatttatcggagaaattttgtaaggagagagatgttgttactgtggttgtctccggtggttcacttatcaagtctcttatgaaattgggggagccaccatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="82760" stop="83757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83060" g_stop="83454" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83455" i_stop="83527" i_length="73">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83528" g_stop="83550" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="417" r_length="23" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E336589" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83060" e_stop="83454"/>
          <exon e_start="83528" e_stop="83550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTACATGGCAGAGTGCACACTGGACTTAGCCTCCTCTTCTTCCGCTCTCTCTGCTAACTTGCGCATCTCACCTACCCGATTGTCTCCTCTCCGACGATCTCTTGCATTGACCTCTCCGTCCGTTGCTGGAAAGCCACTTTTCTGCTCCCACCCGCATCAGAGGAACTCAGTGTTGAGTACAAATTTCTCGAGATCTCAGTTCAGAACCAAATCATCAATGGCTGAGACAGTGTCTGGGGAAAGTAAAGCGGAAGTGAAAGTGTACGATTCCGATGAGGAACTTGCTGTGGCTCTAGCGAAGTACACTGCTGATTTATCGGAGAAATTTTGTAAGGAGAGAGATGTTTTTACTGTGGTTGTTTCCGGTGGTTCACTTATCAAGTCTCTCAGGTATGATTGATTAATTCTCTTTGTTTCTTCTATGAATTGGGGAATTTTTTTGGGTTGCTAATGTTTATTGCAGGAAATTGGTGGAGCCACCATATA</genome_strand>
        <mrna_strand>TTTTATTACATGGCAGAGTGCACACTGGACTTAGCCTCCTCTTCTTCCGCTCTCTCTGCTAACTTGCGCATCTCACCTACCCGATTGTCTCCTCTCCGACGATCTCTTGCATTGACCTCTCCGTCCG-GGCTGGAAAGCCACTTTTCTGCTCCCACCCGCATCAGAGGAACTCAGTGTTGAGTACAAATTTCTCGAGATCTCAGTTCAGAACCAAATCATCAATGGCTGAGACAGTGTCTGGGGAAAGTAAAGCGGAAGTGAAAGTGTACGATTCCGATGAGGAACTTGCTGTGGCTCTAGCGAACTACACTGCTGATTTATCGGAGAAATTTTGTAAGGAGAGAGATGTTGTTACTGTGGTTGTCTCCGGTGGTTCACTTATCAAGTCTCTTAT.........................................................................GAAATTGGGGGAGCCACCATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451893" ref_strand="+" ref_description="SGN-E451893 [cSTS-15-A9]">
      <seq>gctctctctgctaacttgcgcatctcacctaccagattctctcctctccgacgaacccttccgttgacctctccgtccgttgctggaaagccacttttctgctcccacctgcatcggagaaactcagtgttgagtacaaattcctcgagatctcagttcagaacaaaatcatcaatggctgagaaagtgaccgggaaaagtaaagcggaagtgaaagtgtacgattccgaggaggaacttgctgtggctctagcgaagtacactgcggatttatcggagaaattttgtaaggagagagatgcttttactgtggttgtttccggtggttcacttatcaagtctctcaggaaattggtggagccaccatatattgattcaatagactggtccaaatggcacgttttctgggtggatgagagagtggttccaaaggatcatcctgacagcaattatttgcttgcttatgatggttttctatccaagatacctattcctgctggtcatgtgtatgccataaatgatgcattatcagcagaggctgcggcagatgattacgagacttgtctaaggcacttagttaagagcaagattcttgacatctctaaagagagtggatttccaaaatttgatgtaatgctgttgggtatgggtccagacggacatgtagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="82808" stop="85816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83108" g_stop="83454" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83455" i_stop="83527" i_length="73">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83528" g_stop="83663" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="483" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83664" i_stop="85331" i_length="1668">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85332" g_stop="85516" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="668" r_length="185" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E451893" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E451893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83108" e_stop="83454"/>
          <exon e_start="83528" e_stop="83663"/>
          <exon e_start="85332" e_stop="85516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTCTCTGCTAACTTGCGCATCTCACCTACCCGATTGTCTCCTCTCCGACGATCTCTTGCATTGACCTCTCCGTCCGTTGCTGGAAAGCCACTTTTCTGCTCCCACCCGCATCAGAGGAACTCAGTGTTGAGTACAAATTTCTCGAGATCTCAGTTCAGAACCAAATCATCAATGGCTGAGACAGTGTCTGGGGAAAGTAAAGCGGAAGTGAAAGTGTACGATTCCGATGAGGAACTTGCTGTGGCTCTAGCGAAGTACACTGCTGATTTATCGGAGAAATTTTGTAAGGAGAGAGATGTTTTTACTGTGGTTGTTTCCGGTGGTTCACTTATCAAGTCTCTCAGGTATGATTGATTAATTCTCTTTGTTTCTTCTATGAATTGGGGAATTTTTTTGGGTTGCTAATGTTTATTGCAGGAAATTGGTGGAGCCACCATATATTGATTCAATAGACTGGTCCAAATGGCACGTTTTCTGGGTGGATGAGAGAGTGGTTCCAAAGGATCATCCTGACAGCAATTATTTGCTTGCTTATGATGGTTTTCTATCCAAGGTATATTTGCAGCCCTTCCTACAACATATTGATTTTATTTACTGCTGCCACAGTGTGTACTGTGTAGTTTCTTCATTAGCTTTCTACCCATTATATTTCACCTCTCCTCTGTGTATTTGTTGTTTTACCCCAACTTTTCTGATCTTTTGCTTGTTTGCCCAGTCAAAATGTGGGACGCAGTAGGTTTCTTGTACTAGTGATTTCTTCTCATCTGTTCAGTTAGATACCCCAAAGTACTAGTAGACATGCCCAGACAGCAGGTTATAAAAAAAAGTTAATCTTTTAAGTTTATCTTTTTTTTCTAGTTACGAGCAATGCTGATGGTCTCAATCTCCTTAACAAATAAGTTATAGGGGGTGGGGGGATGTGAACAGAGATTAAAGTGCACAGTATTGATGGAGAATACATCTAGAGGTATTCAGATTCTCATTCAACTCTGGATGAAATATTTGGGAAAATCAATTGAGAAAGTAATTATGTGAGGGCGTTAGGGCAGCGGTAACAAGGAATGCAAGTCATGCATACTATAAACATATCTTTTTCCGCAGTCCTTGAGATTAAGAAGTTAAGTAAGATAAGCCTGCTAATATATGGACGGAAGAAACAATCTCTACCTATATATATATATACATATTTGGGGGTGGTTTGGTTATATGTGACAAAGTCAAGCAATCTGTTTACATGATCATATCTATCATGGACCCAACTGTGCGAAGAAGCTGTATGTTAAATAAGTTTTAGATTACATTTTCTTAAGATATGTGATGATGTTACGCAATTCATGTAAAAACAAGAAACTAAAAAGAAAATCTTTGCACTGTATTGGAATAAACAGCTTCAAATTCACTTTTTTTTTTAGAAAACATTAAATTTTGCTTTGGTTAACAAAATTCTGATATAAAATTACTTCTTATAGAATCTGTCAGCCCCTGAAGCCCTCCTTAAACAACAACTGAGGTCCTTCTATTATTTTGTGTGTGTGGGGGGGGGGGGGGGGGTTATATTAAAATGATGGAGCATTAGCAAAATACTTCAAACATTTACCATGGTAGAGATTACTTAATGAGAAAGGATTTGGAAATTTTTGGGGCTAGAAGAGTTAAGCGGGGTTGAGGTTTAGAGGATCAACTGAAAAGTAATTATAACTTAAGCACAATTGTCAATTGAGCATGTTGGGAAACTTAAAGAGCAAAGAGTGTCCAACTCAATACCATGTGGAGCTGCCGATAAGATCAGTTGGACATTTTATGTTGACTTCGGTGAATTCCTTTTAATATAAGGATGAATAAGTGGGTTTGAATTACACCCTCAATGTTAACCTACTTACTTTCAGTTAAGTCTCTTCATTATCTCTAACAAGTTGGGTTGCCTTTACTTCTTGATTCTTACTTGGCAGTCTGACCAGCTCTTAAGCACAGACTATTTAAATAAAGATGGTTGTGAACTAAATTTATCCAATTTGTATCAGAAAAGATGTTTAGTGATGCATAGCTGCAAGGGCATCTTTTTGGATTTCAAATTGCTCATAGTACTGGCTTCACATGTGAACTGCCTACATTGTTTGATCTTATTATGAATGATGATAATTCTTACTTCATCATTATTCTCAGTTGACATCTTTAATTCTTTCTACCAAACTTCTAACCTCATCTTTACTTCTCTTGGCAGATACCTATTCCTGCTGGTAATGTGCATGCCATAAATGATGCATTATCAGCAGAGGCTGCGGCAGATGATTACGAGACTTGTCTAAGGCACTTAGTCAAGAGCAAGATACTTGACATCTCTGAAGAGAGTGGGTTTCCAAAATTTGATGTAATGCTATTGGGTATGGGTCCAGACGGACATGTAGC</genome_strand>
        <mrna_strand>GCTCTCTCTGCTAACTTGCGCATCTCACCTACCAGATTCTCTCCTCTCCGACGAACCCTTCCGTTGACCTCTCCGTCCGTTGCTGGAAAGCCACTTTTCTGCTCCCACCTGCATCGGAGAAACTCAGTGTTGAGTACAAATTCCTCGAGATCTCAGTTCAGAACAAAATCATCAATGGCTGAGAAAGTGACCGGGAAAAGTAAAGCGGAAGTGAAAGTGTACGATTCCGAGGAGGAACTTGCTGTGGCTCTAGCGAAGTACACTGCGGATTTATCGGAGAAATTTTGTAAGGAGAGAGATGCTTTTACTGTGGTTGTTTCCGGTGGTTCACTTATCAAGTCTCTCAG.........................................................................GAAATTGGTGGAGCCACCATATATTGATTCAATAGACTGGTCCAAATGGCACGTTTTCTGGGTGGATGAGAGAGTGGTTCCAAAGGATCATCCTGACAGCAATTATTTGCTTGCTTATGATGGTTTTCTATCCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCTATTCCTGCTGGTCATGTGTATGCCATAAATGATGCATTATCAGCAGAGGCTGCGGCAGATGATTACGAGACTTGTCTAAGGCACTTAGTTAAGAGCAAGATTCTTGACATCTCTAAAGAGAGTGGATTTCCAAAATTTGATGTAATGCTGTTGGGTATGGGTCCAGACGGACATGTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555321" ref_strand="+" ref_description="SGN-E555321 [cTSC-1-J13]">
      <seq>atttaataataccatggcagtgagcctggcctcctcttctcccattctctcaagcatctcacctacccgattctctcctatccgccgatctattctgttgacctctttctctgttgctggaaagccacttttttgctctcaccctcatcggacaagctcaaattcctggagatctcagtgtcgtacaaaagcatcaatggctgagagtgttaccgggaaaagtaaagcggaagtgaaactgtacgattccgaggaggaacttgctacggctctagccaagtacactgccgatttatcggagaaattttgcaaagagagagatgcttttactgtggttgtttctggtggttcacttatcaagtctctcaggaaattggtggagccaccatatattaattcaatagactggtccaaatggcacattttctgggtggatgagagagtggttccaaaggatcatcctgacagcaattatttgcttgcttataatggttttctatccaagatacctattccggctggtcatgtgtatgccataaatgatgcattatcagcagaggctgcggcagatgattacgagacttgtctaaggcacttagttaagagcaagattgtagacatctctaaagagagtggatttccaaaatttgatgtaatgcttttgggtatgggtccagacggacatatagcttccttgtttccggggcatcctcttgtccatgagaaagaaaagtgggtcaccttcatcaaggactctccaaaacctccaccgaacagaattacatttacattccctgtaataaactcatctgcaaatattgcacttgctatagtaggtgctgggaaggcagatgtagtgcagaaatcactaggcgatgataaaagttctgatctgctgcctgtgcagatggtttcacccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="82827" stop="86046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83127" g_stop="83454" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="369" r_length="316" r_score="0.841"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83455" i_stop="83527" i_length="73">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83528" g_stop="83663" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="505" r_length="136" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83664" i_stop="85331" i_length="1668">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85332" g_stop="85746" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="920" r_length="415" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E555321" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>879</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83127" e_stop="83454"/>
          <exon e_start="83528" e_stop="83663"/>
          <exon e_start="85332" e_stop="85746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATCTCACCTACCCGATTGTCTCCTCTCCGACGATCTCTTGCATTGACCTCTCCGTCCGTTGCTGGAAAGCCACTTTTCTGCTCCCACCCGCATCAGAGGAACTCAGTGTTGAGTACAAATTTCTCGAGATCTCAGTTCAGAACCAAATCATCAATGGCTGAGACAGTGTCTGGGGAAAGTAAAGCGGAAGTGAAAGTGTACGATTCCGATGAGGAACTTGCTGTGGCTCTAGCGAAGTACACTGCTGATTTATCGGAGAAATTTTGTAAGGAGAGAGATGTTTTTACTGTGGTTGTTTCCGGTGGTTCACTTATCAAGTCTCTCAGGTATGATTGATTAATTCTCTTTGTTTCTTCTATGAATTGGGGAATTTTTTTGGGTTGCTAATGTTTATTGCAGGAAATTGGTGGAGCCACCATATATTGATTCAATAGACTGGTCCAAATGGCACGTTTTCTGGGTGGATGAGAGAGTGGTTCCAAAGGATCATCCTGACAGCAATTATTTGCTTGCTTATGATGGTTTTCTATCCAAGGTATATTTGCAGCCCTTCCTACAACATATTGATTTTATTTACTGCTGCCACAGTGTGTACTGTGTAGTTTCTTCATTAGCTTTCTACCCATTATATTTCACCTCTCCTCTGTGTATTTGTTGTTTTACCCCAACTTTTCTGATCTTTTGCTTGTTTGCCCAGTCAAAATGTGGGACGCAGTAGGTTTCTTGTACTAGTGATTTCTTCTCATCTGTTCAGTTAGATACCCCAAAGTACTAGTAGACATGCCCAGACAGCAGGTTATAAAAAAAAGTTAATCTTTTAAGTTTATCTTTTTTTTCTAGTTACGAGCAATGCTGATGGTCTCAATCTCCTTAACAAATAAGTTATAGGGGGTGGGGGGATGTGAACAGAGATTAAAGTGCACAGTATTGATGGAGAATACATCTAGAGGTATTCAGATTCTCATTCAACTCTGGATGAAATATTTGGGAAAATCAATTGAGAAAGTAATTATGTGAGGGCGTTAGGGCAGCGGTAACAAGGAATGCAAGTCATGCATACTATAAACATATCTTTTTCCGCAGTCCTTGAGATTAAGAAGTTAAGTAAGATAAGCCTGCTAATATATGGACGGAAGAAACAATCTCTACCTATATATATATATACATATTTGGGGGTGGTTTGGTTATATGTGACAAAGTCAAGCAATCTGTTTACATGATCATATCTATCATGGACCCAACTGTGCGAAGAAGCTGTATGTTAAATAAGTTTTAGATTACATTTTCTTAAGATATGTGATGATGTTACGCAATTCATGTAAAAACAAGAAACTAAAAAGAAAATCTTTGCACTGTATTGGAATAAACAGCTTCAAATTCACTTTTTTTTTTAGAAAACATTAAATTTTGCTTTGGTTAACAAAATTCTGATATAAAATTACTTCTTATAGAATCTGTCAGCCCCTGAAGCCCTCCTTAAACAACAACTGAGGTCCTTCTATTATTTTGTGTGTGTGGGGGGGGGGGGGGGGGTTATATTAAAATGATGGAGCATTAGCAAAATACTTCAAACATTTACCATGGTAGAGATTACTTAATGAGAAAGGATTTGGAAATTTTTGGGGCTAGAAGAGTTAAGCGGGGTTGAGGTTTAGAGGATCAACTGAAAAGTAATTATAACTTAAGCACAATTGTCAATTGAGCATGTTGGGAAACTTAAAGAGCAAAGAGTGTCCAACTCAATACCATGTGGAGCTGCCGATAAGATCAGTTGGACATTTTATGTTGACTTCGGTGAATTCCTTTTAATATAAGGATGAATAAGTGGGTTTGAATTACACCCTCAATGTTAACCTACTTACTTTCAGTTAAGTCTCTTCATTATCTCTAACAAGTTGGGTTGCCTTTACTTCTTGATTCTTACTTGGCAGTCTGACCAGCTCTTAAGCACAGACTATTTAAATAAAGATGGTTGTGAACTAAATTTATCCAATTTGTATCAGAAAAGATGTTTAGTGATGCATAGCTGCAAGGGCATCTTTTTGGATTTCAAATTGCTCATAGTACTGGCTTCACATGTGAACTGCCTACATTGTTTGATCTTATTATGAATGATGATAATTCTTACTTCATCATTATTCTCAGTTGACATCTTTAATTCTTTCTACCAAACTTCTAACCTCATCTTTACTTCTCTTGGCAGATACCTATTCCTGCTGGTAATGTGCATGCCATAAATGATGCATTATCAGCAGAGGCTGCGGCAGATGATTACGAGACTTGTCTAAGGCACTTAGTCAAGAGCAAGATACTTGACATCTCTGAAGAGAGTGGGTTTCCAAAATTTGATGTAATGCTATTGGGTATGGGTCCAGACGGACATGTAGCTTCCTTGTTTCCCGGGCATCCTCTTGTCCATGAGAAAGCGAAGTGGGTCACCTTCATCAAGGATTCTCCAAAACCTCCACCGAACAGGATTACATTTACATTCCCTGTAATAAACTCATCTGCAAATATTGCACTTGCTATAGTAGGTGCTGGTAAGGCAGATGTAGTGCATAAATCGCTAGGTGATGATAAAAGTTCTGATTTGCTGCCTGTGCAGATGGTTTCACCTG</genome_strand>
        <mrna_strand>GCATCTCACCTACCCGATTCTCTCCTATCCGCCGATCTATTCTGTTGACCTCTTTCTCTGTTGCTGGAAAGCCACTTTTTTGCTCTCACCCTCATC---GG-A--CA-AGCT-----CAAATTCCTGGAGATCTCAGTGTCGTACAAAAGCATCAATGGCTGAGAGTGTTACCGGGAAAAGTAAAGCGGAAGTGAAACTGTACGATTCCGAGGAGGAACTTGCTACGGCTCTAGCCAAGTACACTGCCGATTTATCGGAGAAATTTTGCAAAGAGAGAGATGCTTTTACTGTGGTTGTTTCTGGTGGTTCACTTATCAAGTCTCTCAG.........................................................................GAAATTGGTGGAGCCACCATATATTAATTCAATAGACTGGTCCAAATGGCACATTTTCTGGGTGGATGAGAGAGTGGTTCCAAAGGATCATCCTGACAGCAATTATTTGCTTGCTTATAATGGTTTTCTATCCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCTATTCCGGCTGGTCATGTGTATGCCATAAATGATGCATTATCAGCAGAGGCTGCGGCAGATGATTACGAGACTTGTCTAAGGCACTTAGTTAAGAGCAAGATTGTAGACATCTCTAAAGAGAGTGGATTTCCAAAATTTGATGTAATGCTTTTGGGTATGGGTCCAGACGGACATATAGCTTCCTTGTTTCCGGGGCATCCTCTTGTCCATGAGAAAGAAAAGTGGGTCACCTTCATCAAGGACTCTCCAAAACCTCCACCGAACAGAATTACATTTACATTCCCTGTAATAAACTCATCTGCAAATATTGCACTTGCTATAGTAGGTGCTGGGAAGGCAGATGTAGTGCAGAAATCACTAGGCGATGATAAAAGTTCTGATCTGCTGCCTGTGCAGATGGTTTCACCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475972" ref_strand="+" ref_description="SGN-E475972 [cSTB-42-L16]">
      <seq>cgattctctcctatccgcctacctattctgttgacctcttcgtttgttgctggaaagccacttttttgctctcacccgcattggagaaactcagtgttgagtacaaattcctggagatctcagtgccgtacaaaagcatcaatggctgagagagtgagcgcgaaagtggaagtgtacgattccgaggaggaacttgctgtggctctagcgaagtacactgccgatttatcggagaaattttgcaaagagagagatgcttttactgtggttgtttccggtggttcacttatcaagtctctcaggaaattggtggagccaccatatattgattcaatagactggtccaaatggcacgttttctgggtggatgagagagtggttccaaaggatcatcctgacagcaattatttgcttgcttatgatggttttctatccaagatacctattcctgctggtcatgtgtatgccataaatgatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="82871" stop="85673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83141" g_stop="83454" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.857"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83455" i_stop="83527" i_length="73">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83528" g_stop="83663" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="438" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83664" i_stop="85331" i_length="1668">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85332" g_stop="85373" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="480" r_length="42" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E475972" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.025" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E475972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83141" e_stop="83454"/>
          <exon e_start="83528" e_stop="83663"/>
          <exon e_start="85332" e_stop="85373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTGTCTCCTCTCCGACGATCTCTTGCATTGACCTCTCCGTCCGTTGCTGGAAAGCCACTTTTCTGCTCCCACCCGCATCAGAGGAACTCAGTGTTGAGTACAAATTTCTCGAGATCTCAGTTCAGAACCAAATCATCAATGGCTGAGACAGTGTCTGGGGAAAGTAAAGCGGAAGTGAAAGTGTACGATTCCGATGAGGAACTTGCTGTGGCTCTAGCGAAGTACACTGCTGATTTATCGGAGAAATTTTGTAAGGAGAGAGATGTTTTTACTGTGGTTGTTTCCGGTGGTTCACTTATCAAGTCTCTCAGGTATGATTGATTAATTCTCTTTGTTTCTTCTATGAATTGGGGAATTTTTTTGGGTTGCTAATGTTTATTGCAGGAAATTGGTGGAGCCACCATATATTGATTCAATAGACTGGTCCAAATGGCACGTTTTCTGGGTGGATGAGAGAGTGGTTCCAAAGGATCATCCTGACAGCAATTATTTGCTTGCTTATGATGGTTTTCTATCCAAGGTATATTTGCAGCCCTTCCTACAACATATTGATTTTATTTACTGCTGCCACAGTGTGTACTGTGTAGTTTCTTCATTAGCTTTCTACCCATTATATTTCACCTCTCCTCTGTGTATTTGTTGTTTTACCCCAACTTTTCTGATCTTTTGCTTGTTTGCCCAGTCAAAATGTGGGACGCAGTAGGTTTCTTGTACTAGTGATTTCTTCTCATCTGTTCAGTTAGATACCCCAAAGTACTAGTAGACATGCCCAGACAGCAGGTTATAAAAAAAAGTTAATCTTTTAAGTTTATCTTTTTTTTCTAGTTACGAGCAATGCTGATGGTCTCAATCTCCTTAACAAATAAGTTATAGGGGGTGGGGGGATGTGAACAGAGATTAAAGTGCACAGTATTGATGGAGAATACATCTAGAGGTATTCAGATTCTCATTCAACTCTGGATGAAATATTTGGGAAAATCAATTGAGAAAGTAATTATGTGAGGGCGTTAGGGCAGCGGTAACAAGGAATGCAAGTCATGCATACTATAAACATATCTTTTTCCGCAGTCCTTGAGATTAAGAAGTTAAGTAAGATAAGCCTGCTAATATATGGACGGAAGAAACAATCTCTACCTATATATATATATACATATTTGGGGGTGGTTTGGTTATATGTGACAAAGTCAAGCAATCTGTTTACATGATCATATCTATCATGGACCCAACTGTGCGAAGAAGCTGTATGTTAAATAAGTTTTAGATTACATTTTCTTAAGATATGTGATGATGTTACGCAATTCATGTAAAAACAAGAAACTAAAAAGAAAATCTTTGCACTGTATTGGAATAAACAGCTTCAAATTCACTTTTTTTTTTAGAAAACATTAAATTTTGCTTTGGTTAACAAAATTCTGATATAAAATTACTTCTTATAGAATCTGTCAGCCCCTGAAGCCCTCCTTAAACAACAACTGAGGTCCTTCTATTATTTTGTGTGTGTGGGGGGGGGGGGGGGGGTTATATTAAAATGATGGAGCATTAGCAAAATACTTCAAACATTTACCATGGTAGAGATTACTTAATGAGAAAGGATTTGGAAATTTTTGGGGCTAGAAGAGTTAAGCGGGGTTGAGGTTTAGAGGATCAACTGAAAAGTAATTATAACTTAAGCACAATTGTCAATTGAGCATGTTGGGAAACTTAAAGAGCAAAGAGTGTCCAACTCAATACCATGTGGAGCTGCCGATAAGATCAGTTGGACATTTTATGTTGACTTCGGTGAATTCCTTTTAATATAAGGATGAATAAGTGGGTTTGAATTACACCCTCAATGTTAACCTACTTACTTTCAGTTAAGTCTCTTCATTATCTCTAACAAGTTGGGTTGCCTTTACTTCTTGATTCTTACTTGGCAGTCTGACCAGCTCTTAAGCACAGACTATTTAAATAAAGATGGTTGTGAACTAAATTTATCCAATTTGTATCAGAAAAGATGTTTAGTGATGCATAGCTGCAAGGGCATCTTTTTGGATTTCAAATTGCTCATAGTACTGGCTTCACATGTGAACTGCCTACATTGTTTGATCTTATTATGAATGATGATAATTCTTACTTCATCATTATTCTCAGTTGACATCTTTAATTCTTTCTACCAAACTTCTAACCTCATCTTTACTTCTCTTGGCAGATACCTATTCCTGCTGGTAATGTGCATGCCATAAATGATGCA</genome_strand>
        <mrna_strand>CGATTCTCTCCTATCCGCCTACCTATTCTGTTGACCTCTTCGTTTGTTGCTGGAAAGCCACTTTTTTGCTCTCACCCGCATTGGAGAAACTCAGTGTTGAGTACAAATTCCTGGAGATCTCAGTGCCGTACAAAAGCATCAATGGCTGAG--AGAG--T---G--AG---CGCGAAAGTGGAAGTGTACGATTCCGAGGAGGAACTTGCTGTGGCTCTAGCGAAGTACACTGCCGATTTATCGGAGAAATTTTGCAAAGAGAGAGATGCTTTTACTGTGGTTGTTTCCGGTGGTTCACTTATCAAGTCTCTCAG.........................................................................GAAATTGGTGGAGCCACCATATATTGATTCAATAGACTGGTCCAAATGGCACGTTTTCTGGGTGGATGAGAGAGTGGTTCCAAAGGATCATCCTGACAGCAATTATTTGCTTGCTTATGATGGTTTTCTATCCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCTATTCCTGCTGGTCATGTGTATGCCATAAATGATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228042" ref_strand="+" ref_description="SGN-E228042 [cLED-2-C20]">
      <seq>gaaagccacttttctgctcccacccgcatcagaggaactcagtgttgagtacaaatttctcgagatctcagttcagaaccaaatcatcaatggctgagacagtgtctggggaaagtaaagcggaagtgaaagtgtacgattccgatgaggaacttgctgtggctctagcgaagtacactgctgatttatcggagaaattttgtaaggagagagatgtttttactgtggttgtttccggtggttcacttatcaagtctctcaggaaattggtggagccaccatatattgattcaatagactggtccaaatggcacgttttctgggtggatgagagagtggttccaaaggatcatcctgacagcaattatttgcttgcttatgatggttttctatccaagatacctattcctgctggtaatgtgcatgccataaatgatgcattatcagcagaggctgcggcagatgattacgagacttgtctaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="82893" stop="85717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83193" g_stop="83454" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83455" i_stop="83527" i_length="73">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83528" g_stop="83663" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="398" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83664" i_stop="85331" i_length="1668">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85332" g_stop="85417" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="484" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E228042" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83193" e_stop="83454"/>
          <exon e_start="83528" e_stop="83663"/>
          <exon e_start="85332" e_stop="85417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGCCACTTTTCTGCTCCCACCCGCATCAGAGGAACTCAGTGTTGAGTACAAATTTCTCGAGATCTCAGTTCAGAACCAAATCATCAATGGCTGAGACAGTGTCTGGGGAAAGTAAAGCGGAAGTGAAAGTGTACGATTCCGATGAGGAACTTGCTGTGGCTCTAGCGAAGTACACTGCTGATTTATCGGAGAAATTTTGTAAGGAGAGAGATGTTTTTACTGTGGTTGTTTCCGGTGGTTCACTTATCAAGTCTCTCAGGTATGATTGATTAATTCTCTTTGTTTCTTCTATGAATTGGGGAATTTTTTTGGGTTGCTAATGTTTATTGCAGGAAATTGGTGGAGCCACCATATATTGATTCAATAGACTGGTCCAAATGGCACGTTTTCTGGGTGGATGAGAGAGTGGTTCCAAAGGATCATCCTGACAGCAATTATTTGCTTGCTTATGATGGTTTTCTATCCAAGGTATATTTGCAGCCCTTCCTACAACATATTGATTTTATTTACTGCTGCCACAGTGTGTACTGTGTAGTTTCTTCATTAGCTTTCTACCCATTATATTTCACCTCTCCTCTGTGTATTTGTTGTTTTACCCCAACTTTTCTGATCTTTTGCTTGTTTGCCCAGTCAAAATGTGGGACGCAGTAGGTTTCTTGTACTAGTGATTTCTTCTCATCTGTTCAGTTAGATACCCCAAAGTACTAGTAGACATGCCCAGACAGCAGGTTATAAAAAAAAGTTAATCTTTTAAGTTTATCTTTTTTTTCTAGTTACGAGCAATGCTGATGGTCTCAATCTCCTTAACAAATAAGTTATAGGGGGTGGGGGGATGTGAACAGAGATTAAAGTGCACAGTATTGATGGAGAATACATCTAGAGGTATTCAGATTCTCATTCAACTCTGGATGAAATATTTGGGAAAATCAATTGAGAAAGTAATTATGTGAGGGCGTTAGGGCAGCGGTAACAAGGAATGCAAGTCATGCATACTATAAACATATCTTTTTCCGCAGTCCTTGAGATTAAGAAGTTAAGTAAGATAAGCCTGCTAATATATGGACGGAAGAAACAATCTCTACCTATATATATATATACATATTTGGGGGTGGTTTGGTTATATGTGACAAAGTCAAGCAATCTGTTTACATGATCATATCTATCATGGACCCAACTGTGCGAAGAAGCTGTATGTTAAATAAGTTTTAGATTACATTTTCTTAAGATATGTGATGATGTTACGCAATTCATGTAAAAACAAGAAACTAAAAAGAAAATCTTTGCACTGTATTGGAATAAACAGCTTCAAATTCACTTTTTTTTTTAGAAAACATTAAATTTTGCTTTGGTTAACAAAATTCTGATATAAAATTACTTCTTATAGAATCTGTCAGCCCCTGAAGCCCTCCTTAAACAACAACTGAGGTCCTTCTATTATTTTGTGTGTGTGGGGGGGGGGGGGGGGGTTATATTAAAATGATGGAGCATTAGCAAAATACTTCAAACATTTACCATGGTAGAGATTACTTAATGAGAAAGGATTTGGAAATTTTTGGGGCTAGAAGAGTTAAGCGGGGTTGAGGTTTAGAGGATCAACTGAAAAGTAATTATAACTTAAGCACAATTGTCAATTGAGCATGTTGGGAAACTTAAAGAGCAAAGAGTGTCCAACTCAATACCATGTGGAGCTGCCGATAAGATCAGTTGGACATTTTATGTTGACTTCGGTGAATTCCTTTTAATATAAGGATGAATAAGTGGGTTTGAATTACACCCTCAATGTTAACCTACTTACTTTCAGTTAAGTCTCTTCATTATCTCTAACAAGTTGGGTTGCCTTTACTTCTTGATTCTTACTTGGCAGTCTGACCAGCTCTTAAGCACAGACTATTTAAATAAAGATGGTTGTGAACTAAATTTATCCAATTTGTATCAGAAAAGATGTTTAGTGATGCATAGCTGCAAGGGCATCTTTTTGGATTTCAAATTGCTCATAGTACTGGCTTCACATGTGAACTGCCTACATTGTTTGATCTTATTATGAATGATGATAATTCTTACTTCATCATTATTCTCAGTTGACATCTTTAATTCTTTCTACCAAACTTCTAACCTCATCTTTACTTCTCTTGGCAGATACCTATTCCTGCTGGTAATGTGCATGCCATAAATGATGCATTATCAGCAGAGGCTGCGGCAGATGATTACGAGACTTGTCTAAG</genome_strand>
        <mrna_strand>GAAAGCCACTTTTCTGCTCCCACCCGCATCAGAGGAACTCAGTGTTGAGTACAAATTTCTCGAGATCTCAGTTCAGAACCAAATCATCAATGGCTGAGACAGTGTCTGGGGAAAGTAAAGCGGAAGTGAAAGTGTACGATTCCGATGAGGAACTTGCTGTGGCTCTAGCGAAGTACACTGCTGATTTATCGGAGAAATTTTGTAAGGAGAGAGATGTTTTTACTGTGGTTGTTTCCGGTGGTTCACTTATCAAGTCTCTCAG.........................................................................GAAATTGGTGGAGCCACCATATATTGATTCAATAGACTGGTCCAAATGGCACGTTTTCTGGGTGGATGAGAGAGTGGTTCCAAAGGATCATCCTGACAGCAATTATTTGCTTGCTTATGATGGTTTTCTATCCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCTATTCCTGCTGGTAATGTGCATGCCATAAATGATGCATTATCAGCAGAGGCTGCGGCAGATGATTACGAGACTTGTCTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E582036" ref_strand="+" ref_description="SGN-E582036 [7669]">
      <seq>caaaatcatcaatggctgagaaagtgaccgggaaaagtaaagcggaagtgaaagtgtacgattccgaggaggaacttgctgtggctctagcgaagtacactgcggatttatcggagaaattttgtaaggagagagatgcttttactgtggttgtttccggtggttcacttatcaagtctctcaggaaattggtggagccaccatatattgattcaatagactggtccaaatggcacgttttctgggtggatgagagagtggttccaaaggatcatcctgacagcaattatttgcttgcttatgatggttttctatccaagatacctattcctgctggtcatgtgtatgccataaatgatgcattatcagcagaggctgcggcagatgattacgagacttgtctaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="82973" stop="85717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83271" g_stop="83454" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83455" i_stop="83527" i_length="73">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83528" g_stop="83663" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="320" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83664" i_stop="85331" i_length="1668">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85332" g_stop="85417" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="406" r_length="86" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E582036" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E582036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83271" e_stop="83454"/>
          <exon e_start="83528" e_stop="83663"/>
          <exon e_start="85332" e_stop="85417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATCATCAATGGCTGAGACAGTGTCTGGGGAAAGTAAAGCGGAAGTGAAAGTGTACGATTCCGATGAGGAACTTGCTGTGGCTCTAGCGAAGTACACTGCTGATTTATCGGAGAAATTTTGTAAGGAGAGAGATGTTTTTACTGTGGTTGTTTCCGGTGGTTCACTTATCAAGTCTCTCAGGTATGATTGATTAATTCTCTTTGTTTCTTCTATGAATTGGGGAATTTTTTTGGGTTGCTAATGTTTATTGCAGGAAATTGGTGGAGCCACCATATATTGATTCAATAGACTGGTCCAAATGGCACGTTTTCTGGGTGGATGAGAGAGTGGTTCCAAAGGATCATCCTGACAGCAATTATTTGCTTGCTTATGATGGTTTTCTATCCAAGGTATATTTGCAGCCCTTCCTACAACATATTGATTTTATTTACTGCTGCCACAGTGTGTACTGTGTAGTTTCTTCATTAGCTTTCTACCCATTATATTTCACCTCTCCTCTGTGTATTTGTTGTTTTACCCCAACTTTTCTGATCTTTTGCTTGTTTGCCCAGTCAAAATGTGGGACGCAGTAGGTTTCTTGTACTAGTGATTTCTTCTCATCTGTTCAGTTAGATACCCCAAAGTACTAGTAGACATGCCCAGACAGCAGGTTATAAAAAAAAGTTAATCTTTTAAGTTTATCTTTTTTTTCTAGTTACGAGCAATGCTGATGGTCTCAATCTCCTTAACAAATAAGTTATAGGGGGTGGGGGGATGTGAACAGAGATTAAAGTGCACAGTATTGATGGAGAATACATCTAGAGGTATTCAGATTCTCATTCAACTCTGGATGAAATATTTGGGAAAATCAATTGAGAAAGTAATTATGTGAGGGCGTTAGGGCAGCGGTAACAAGGAATGCAAGTCATGCATACTATAAACATATCTTTTTCCGCAGTCCTTGAGATTAAGAAGTTAAGTAAGATAAGCCTGCTAATATATGGACGGAAGAAACAATCTCTACCTATATATATATATACATATTTGGGGGTGGTTTGGTTATATGTGACAAAGTCAAGCAATCTGTTTACATGATCATATCTATCATGGACCCAACTGTGCGAAGAAGCTGTATGTTAAATAAGTTTTAGATTACATTTTCTTAAGATATGTGATGATGTTACGCAATTCATGTAAAAACAAGAAACTAAAAAGAAAATCTTTGCACTGTATTGGAATAAACAGCTTCAAATTCACTTTTTTTTTTAGAAAACATTAAATTTTGCTTTGGTTAACAAAATTCTGATATAAAATTACTTCTTATAGAATCTGTCAGCCCCTGAAGCCCTCCTTAAACAACAACTGAGGTCCTTCTATTATTTTGTGTGTGTGGGGGGGGGGGGGGGGGTTATATTAAAATGATGGAGCATTAGCAAAATACTTCAAACATTTACCATGGTAGAGATTACTTAATGAGAAAGGATTTGGAAATTTTTGGGGCTAGAAGAGTTAAGCGGGGTTGAGGTTTAGAGGATCAACTGAAAAGTAATTATAACTTAAGCACAATTGTCAATTGAGCATGTTGGGAAACTTAAAGAGCAAAGAGTGTCCAACTCAATACCATGTGGAGCTGCCGATAAGATCAGTTGGACATTTTATGTTGACTTCGGTGAATTCCTTTTAATATAAGGATGAATAAGTGGGTTTGAATTACACCCTCAATGTTAACCTACTTACTTTCAGTTAAGTCTCTTCATTATCTCTAACAAGTTGGGTTGCCTTTACTTCTTGATTCTTACTTGGCAGTCTGACCAGCTCTTAAGCACAGACTATTTAAATAAAGATGGTTGTGAACTAAATTTATCCAATTTGTATCAGAAAAGATGTTTAGTGATGCATAGCTGCAAGGGCATCTTTTTGGATTTCAAATTGCTCATAGTACTGGCTTCACATGTGAACTGCCTACATTGTTTGATCTTATTATGAATGATGATAATTCTTACTTCATCATTATTCTCAGTTGACATCTTTAATTCTTTCTACCAAACTTCTAACCTCATCTTTACTTCTCTTGGCAGATACCTATTCCTGCTGGTAATGTGCATGCCATAAATGATGCATTATCAGCAGAGGCTGCGGCAGATGATTACGAGACTTGTCTAAG</genome_strand>
        <mrna_strand>CAAAATCATCAATGGCTGAGAAAGTGACCGGGAAAAGTAAAGCGGAAGTGAAAGTGTACGATTCCGAGGAGGAACTTGCTGTGGCTCTAGCGAAGTACACTGCGGATTTATCGGAGAAATTTTGTAAGGAGAGAGATGCTTTTACTGTGGTTGTTTCCGGTGGTTCACTTATCAAGTCTCTCAG.........................................................................GAAATTGGTGGAGCCACCATATATTGATTCAATAGACTGGTCCAAATGGCACGTTTTCTGGGTGGATGAGAGAGTGGTTCCAAAGGATCATCCTGACAGCAATTATTTGCTTGCTTATGATGGTTTTCTATCCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCTATTCCTGCTGGTCATGTGTATGCCATAAATGATGCATTATCAGCAGAGGCTGCGGCAGATGATTACGAGACTTGTCTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700857" ref_strand="+" ref_description="SGN-E700857 [FA14BD12]">
      <seq>atccttgagagtgttaccgggaaaagtaaagcggaagtgaaactgcacgattccgaggaggaacttgctacggctctagccaagtacactgccgatttatcggagaaattttgcaaagagagagatgcttttactgtggttgtttctggtggttcacttatcaagtctctcaggaaattggtggagccaccatatattaattcaatagactggtccaaatggcacattttctgggtggatgagagagtggttccaaaggatcatcctgacagcaattatttgcttgcttataatggttttctatccaagatacctattccggctggtcatgtgtatgccataaatgatgcattatcagcagaggctgcggcagatgattacgagacttgtctaaggcacttagttaagagcaagattgtagacatctctaaagagagtggatttccaaaatttgatgtaatgcttttgggtatgggtccagacggacatatagcttccttgtttccggggcatcctcttgtccatgagaaagaaaagtgggtcaccttcatcaaggactctccaaaacctccaccgaacagaattacatttacattccctgtaataaactcatctgcaaatattgcacttgctatagtaggtgctgggaaggcagatgtagtgcagaaatcactaggcgatgataaaagttctgatctgctgcctgtgcagatggtttcacccgaaggagaattggtttggtatttagatatggatgcagcttcgaagctgtaaggatgaagacgtgtgagttgcgtattagtgtctcactcctgtctggattttattattctaatacattctgaagaagggttgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="82990" stop="86163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83282" g_stop="83454" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.884"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83455" i_stop="83527" i_length="73">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83528" g_stop="83663" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="309" r_length="136" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83664" i_stop="85331" i_length="1668">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85332" g_stop="85884" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="859" r_length="550" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E700857" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83282" e_stop="83454"/>
          <exon e_start="83528" e_stop="83663"/>
          <exon e_start="85332" e_stop="85884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTGAGACAGTGTCTGGGGAAAGTAAAGCGGAAGTGAAAGTGTACGATTCCGATGAGGAACTTGCTGTGGCTCTAGCGAAGTACACTGCTGATTTATCGGAGAAATTTTGTAAGGAGAGAGATGTTTTTACTGTGGTTGTTTCCGGTGGTTCACTTATCAAGTCTCTCAGGTATGATTGATTAATTCTCTTTGTTTCTTCTATGAATTGGGGAATTTTTTTGGGTTGCTAATGTTTATTGCAGGAAATTGGTGGAGCCACCATATATTGATTCAATAGACTGGTCCAAATGGCACGTTTTCTGGGTGGATGAGAGAGTGGTTCCAAAGGATCATCCTGACAGCAATTATTTGCTTGCTTATGATGGTTTTCTATCCAAGGTATATTTGCAGCCCTTCCTACAACATATTGATTTTATTTACTGCTGCCACAGTGTGTACTGTGTAGTTTCTTCATTAGCTTTCTACCCATTATATTTCACCTCTCCTCTGTGTATTTGTTGTTTTACCCCAACTTTTCTGATCTTTTGCTTGTTTGCCCAGTCAAAATGTGGGACGCAGTAGGTTTCTTGTACTAGTGATTTCTTCTCATCTGTTCAGTTAGATACCCCAAAGTACTAGTAGACATGCCCAGACAGCAGGTTATAAAAAAAAGTTAATCTTTTAAGTTTATCTTTTTTTTCTAGTTACGAGCAATGCTGATGGTCTCAATCTCCTTAACAAATAAGTTATAGGGGGTGGGGGGATGTGAACAGAGATTAAAGTGCACAGTATTGATGGAGAATACATCTAGAGGTATTCAGATTCTCATTCAACTCTGGATGAAATATTTGGGAAAATCAATTGAGAAAGTAATTATGTGAGGGCGTTAGGGCAGCGGTAACAAGGAATGCAAGTCATGCATACTATAAACATATCTTTTTCCGCAGTCCTTGAGATTAAGAAGTTAAGTAAGATAAGCCTGCTAATATATGGACGGAAGAAACAATCTCTACCTATATATATATATACATATTTGGGGGTGGTTTGGTTATATGTGACAAAGTCAAGCAATCTGTTTACATGATCATATCTATCATGGACCCAACTGTGCGAAGAAGCTGTATGTTAAATAAGTTTTAGATTACATTTTCTTAAGATATGTGATGATGTTACGCAATTCATGTAAAAACAAGAAACTAAAAAGAAAATCTTTGCACTGTATTGGAATAAACAGCTTCAAATTCACTTTTTTTTTTAGAAAACATTAAATTTTGCTTTGGTTAACAAAATTCTGATATAAAATTACTTCTTATAGAATCTGTCAGCCCCTGAAGCCCTCCTTAAACAACAACTGAGGTCCTTCTATTATTTTGTGTGTGTGGGGGGGGGGGGGGGGGTTATATTAAAATGATGGAGCATTAGCAAAATACTTCAAACATTTACCATGGTAGAGATTACTTAATGAGAAAGGATTTGGAAATTTTTGGGGCTAGAAGAGTTAAGCGGGGTTGAGGTTTAGAGGATCAACTGAAAAGTAATTATAACTTAAGCACAATTGTCAATTGAGCATGTTGGGAAACTTAAAGAGCAAAGAGTGTCCAACTCAATACCATGTGGAGCTGCCGATAAGATCAGTTGGACATTTTATGTTGACTTCGGTGAATTCCTTTTAATATAAGGATGAATAAGTGGGTTTGAATTACACCCTCAATGTTAACCTACTTACTTTCAGTTAAGTCTCTTCATTATCTCTAACAAGTTGGGTTGCCTTTACTTCTTGATTCTTACTTGGCAGTCTGACCAGCTCTTAAGCACAGACTATTTAAATAAAGATGGTTGTGAACTAAATTTATCCAATTTGTATCAGAAAAGATGTTTAGTGATGCATAGCTGCAAGGGCATCTTTTTGGATTTCAAATTGCTCATAGTACTGGCTTCACATGTGAACTGCCTACATTGTTTGATCTTATTATGAATGATGATAATTCTTACTTCATCATTATTCTCAGTTGACATCTTTAATTCTTTCTACCAAACTTCTAACCTCATCTTTACTTCTCTTGGCAGATACCTATTCCTGCTGGTAATGTGCATGCCATAAATGATGCATTATCAGCAGAGGCTGCGGCAGATGATTACGAGACTTGTCTAAGGCACTTAGTCAAGAGCAAGATACTTGACATCTCTGAAGAGAGTGGGTTTCCAAAATTTGATGTAATGCTATTGGGTATGGGTCCAGACGGACATGTAGCTTCCTTGTTTCCCGGGCATCCTCTTGTCCATGAGAAAGCGAAGTGGGTCACCTTCATCAAGGATTCTCCAAAACCTCCACCGAACAGGATTACATTTACATTCCCTGTAATAAACTCATCTGCAAATATTGCACTTGCTATAGTAGGTGCTGGTAAGGCAGATGTAGTGCATAAATCGCTAGGTGATGATAAAAGTTCTGATTTGCTGCCTGTGCAGATGGTTTCACCTGAAGGAGAATTAGTTTGGTTTTTAGACAAGGATGCAGCTTCGAAGCTGTAAGGATGAGGATATGTGAGCTGCGTATTTGTGCTTCACTCCTCTGTGTATTTTATTATTCTAATAATACATTCTGAAGAAGGGTTGTCTG</genome_strand>
        <mrna_strand>ATCCTTGAGAGTGTTACCGGGAAAAGTAAAGCGGAAGTGAAACTGCACGATTCCGAGGAGGAACTTGCTACGGCTCTAGCCAAGTACACTGCCGATTTATCGGAGAAATTTTGCAAAGAGAGAGATGCTTTTACTGTGGTTGTTTCTGGTGGTTCACTTATCAAGTCTCTCAG.........................................................................GAAATTGGTGGAGCCACCATATATTAATTCAATAGACTGGTCCAAATGGCACATTTTCTGGGTGGATGAGAGAGTGGTTCCAAAGGATCATCCTGACAGCAATTATTTGCTTGCTTATAATGGTTTTCTATCCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCTATTCCGGCTGGTCATGTGTATGCCATAAATGATGCATTATCAGCAGAGGCTGCGGCAGATGATTACGAGACTTGTCTAAGGCACTTAGTTAAGAGCAAGATTGTAGACATCTCTAAAGAGAGTGGATTTCCAAAATTTGATGTAATGCTTTTGGGTATGGGTCCAGACGGACATATAGCTTCCTTGTTTCCGGGGCATCCTCTTGTCCATGAGAAAGAAAAGTGGGTCACCTTCATCAAGGACTCTCCAAAACCTCCACCGAACAGAATTACATTTACATTCCCTGTAATAAACTCATCTGCAAATATTGCACTTGCTATAGTAGGTGCTGGGAAGGCAGATGTAGTGCAGAAATCACTAGGCGATGATAAAAGTTCTGATCTGCTGCCTGTGCAGATGGTTTCACCCGAAGGAGAATTGGTTTGGTATTTAGATATGGATGCAGCTTCGAAGCTGTAAGGATGAAGACGTGTGAGTTGCGTATTAGTGTCTCACTCCTGTCTGGATTTTATTATTC---TAATACATTCTGAAGAAGGGTTGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560662" ref_strand="+" ref_description="SGN-E560662 [20350]">
      <seq>aagtgaaagtgtacgattccgaggaggaacttgctgtggctctagcgaagtacactgcggatttatcggagaaattttgtaaggagagagatgcttttactgtggttgtttccggtggttcacttatcaagtctctcaggaaattggtggagccaccatatattgattcaatagactggtccaaatggcacgttttctgggtggatgagagagtggttccaaaggatcatcctgacagcaattatttgcttgcttatgatggttttctatccaagatacctattcctgctggtcatgtgtatgccataaatgatgcattatcagcagaggctgccggcagatgattacgagacttgtctaaggcacttagttaagagcaagattcttgacatctctaaagagagtggatttccaaaatttgatgtaatgctgttgggtatgggtccagacggacatgtagcttccttgtttcccgggcatcctcttgtccatgagaaagagaagtgggtcaccttcatcaaagactctccaaaacctccaccgaacaggattacatttacattccctgtaataaactcatctgcaaatattgcacttgctatagtaggtgctgggaaggcagatgtagtgcataaatcgctaggtgatgataaaagttctgatttgctgcctgtgcagaatggtttcacccgaagggagaattagtttggtttttagataaggatgcagcttcgaaggctgtaaggatgcaacatgtgtgggttgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="83016" stop="86118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83316" g_stop="83454" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83455" i_stop="83527" i_length="73">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83528" g_stop="83663" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="275" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83664" i_stop="85331" i_length="1668">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85332" g_stop="85808" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="755" r_length="480" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E560662" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E560662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83316" e_stop="83454"/>
          <exon e_start="83528" e_stop="83663"/>
          <exon e_start="85332" e_stop="85808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTGAAAGTGTACGATTCCGATGAGGAACTTGCTGTGGCTCTAGCGAAGTACACTGCTGATTTATCGGAGAAATTTTGTAAGGAGAGAGATGTTTTTACTGTGGTTGTTTCCGGTGGTTCACTTATCAAGTCTCTCAGGTATGATTGATTAATTCTCTTTGTTTCTTCTATGAATTGGGGAATTTTTTTGGGTTGCTAATGTTTATTGCAGGAAATTGGTGGAGCCACCATATATTGATTCAATAGACTGGTCCAAATGGCACGTTTTCTGGGTGGATGAGAGAGTGGTTCCAAAGGATCATCCTGACAGCAATTATTTGCTTGCTTATGATGGTTTTCTATCCAAGGTATATTTGCAGCCCTTCCTACAACATATTGATTTTATTTACTGCTGCCACAGTGTGTACTGTGTAGTTTCTTCATTAGCTTTCTACCCATTATATTTCACCTCTCCTCTGTGTATTTGTTGTTTTACCCCAACTTTTCTGATCTTTTGCTTGTTTGCCCAGTCAAAATGTGGGACGCAGTAGGTTTCTTGTACTAGTGATTTCTTCTCATCTGTTCAGTTAGATACCCCAAAGTACTAGTAGACATGCCCAGACAGCAGGTTATAAAAAAAAGTTAATCTTTTAAGTTTATCTTTTTTTTCTAGTTACGAGCAATGCTGATGGTCTCAATCTCCTTAACAAATAAGTTATAGGGGGTGGGGGGATGTGAACAGAGATTAAAGTGCACAGTATTGATGGAGAATACATCTAGAGGTATTCAGATTCTCATTCAACTCTGGATGAAATATTTGGGAAAATCAATTGAGAAAGTAATTATGTGAGGGCGTTAGGGCAGCGGTAACAAGGAATGCAAGTCATGCATACTATAAACATATCTTTTTCCGCAGTCCTTGAGATTAAGAAGTTAAGTAAGATAAGCCTGCTAATATATGGACGGAAGAAACAATCTCTACCTATATATATATATACATATTTGGGGGTGGTTTGGTTATATGTGACAAAGTCAAGCAATCTGTTTACATGATCATATCTATCATGGACCCAACTGTGCGAAGAAGCTGTATGTTAAATAAGTTTTAGATTACATTTTCTTAAGATATGTGATGATGTTACGCAATTCATGTAAAAACAAGAAACTAAAAAGAAAATCTTTGCACTGTATTGGAATAAACAGCTTCAAATTCACTTTTTTTTTTAGAAAACATTAAATTTTGCTTTGGTTAACAAAATTCTGATATAAAATTACTTCTTATAGAATCTGTCAGCCCCTGAAGCCCTCCTTAAACAACAACTGAGGTCCTTCTATTATTTTGTGTGTGTGGGGGGGGGGGGGGGGGTTATATTAAAATGATGGAGCATTAGCAAAATACTTCAAACATTTACCATGGTAGAGATTACTTAATGAGAAAGGATTTGGAAATTTTTGGGGCTAGAAGAGTTAAGCGGGGTTGAGGTTTAGAGGATCAACTGAAAAGTAATTATAACTTAAGCACAATTGTCAATTGAGCATGTTGGGAAACTTAAAGAGCAAAGAGTGTCCAACTCAATACCATGTGGAGCTGCCGATAAGATCAGTTGGACATTTTATGTTGACTTCGGTGAATTCCTTTTAATATAAGGATGAATAAGTGGGTTTGAATTACACCCTCAATGTTAACCTACTTACTTTCAGTTAAGTCTCTTCATTATCTCTAACAAGTTGGGTTGCCTTTACTTCTTGATTCTTACTTGGCAGTCTGACCAGCTCTTAAGCACAGACTATTTAAATAAAGATGGTTGTGAACTAAATTTATCCAATTTGTATCAGAAAAGATGTTTAGTGATGCATAGCTGCAAGGGCATCTTTTTGGATTTCAAATTGCTCATAGTACTGGCTTCACATGTGAACTGCCTACATTGTTTGATCTTATTATGAATGATGATAATTCTTACTTCATCATTATTCTCAGTTGACATCTTTAATTCTTTCTACCAAACTTCTAACCTCATCTTTACTTCTCTTGGCAGATACCTATTCCTGCTGGTAATGTGCATGCCATAAATGATGCATTATCAGCAGAGGCTG-CGGCAGATGATTACGAGACTTGTCTAAGGCACTTAGTCAAGAGCAAGATACTTGACATCTCTGAAGAGAGTGGGTTTCCAAAATTTGATGTAATGCTATTGGGTATGGGTCCAGACGGACATGTAGCTTCCTTGTTTCCCGGGCATCCTCTTGTCCATGAGAAAGCGAAGTGGGTCACCTTCATCAAGGATTCTCCAAAACCTCCACCGAACAGGATTACATTTACATTCCCTGTAATAAACTCATCTGCAAATATTGCACTTGCTATAGTAGGTGCTGGTAAGGCAGATGTAGTGCATAAATCGCTAGGTGATGATAAAAGTTCTGATTTGCTGCCTGTGCAG-ATGGTTTCACCTGAA-GGAGAATTAGTTTGGTTTTTAGACAAGGATGCAGCTTCGAA-GCTGTAAGGATGAGGATAT</genome_strand>
        <mrna_strand>AAGTGAAAGTGTACGATTCCGAGGAGGAACTTGCTGTGGCTCTAGCGAAGTACACTGCGGATTTATCGGAGAAATTTTGTAAGGAGAGAGATGCTTTTACTGTGGTTGTTTCCGGTGGTTCACTTATCAAGTCTCTCAG.........................................................................GAAATTGGTGGAGCCACCATATATTGATTCAATAGACTGGTCCAAATGGCACGTTTTCTGGGTGGATGAGAGAGTGGTTCCAAAGGATCATCCTGACAGCAATTATTTGCTTGCTTATGATGGTTTTCTATCCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCTATTCCTGCTGGTCATGTGTATGCCATAAATGATGCATTATCAGCAGAGGCTGCCGGCAGATGATTACGAGACTTGTCTAAGGCACTTAGTTAAGAGCAAGATTCTTGACATCTCTAAAGAGAGTGGATTTCCAAAATTTGATGTAATGCTGTTGGGTATGGGTCCAGACGGACATGTAGCTTCCTTGTTTCCCGGGCATCCTCTTGTCCATGAGAAAGAGAAGTGGGTCACCTTCATCAAAGACTCTCCAAAACCTCCACCGAACAGGATTACATTTACATTCCCTGTAATAAACTCATCTGCAAATATTGCACTTGCTATAGTAGGTGCTGGGAAGGCAGATGTAGTGCATAAATCGCTAGGTGATGATAAAAGTTCTGATTTGCTGCCTGTGCAGAATGGTTTCACCCGAAGGGAGAATTAGTTTGGTTTTTAGATAAGGATGCAGCTTCGAAGGCTGTAAGGATG-CAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707284" ref_strand="+" ref_description="SGN-E707284 [FA32CC09]">
      <seq>actgtacgattccgaggaggaacttgctacggctctagccaagtacactgccgatttatcggagaaattttgcaaagagagagatgcttttactgtggttgtttctggtggttcacttatcaagtctctcaggaaattggtggagccaccatatattaattcaatagactggtccaaatggcacattttctgggtggatgagagagtggttccaaaggatcatcctgacagcaattatttgcttgcttataatggttttctatccaagatacctattccggctggtcatgtgtatgccataaatgatgcattatcagcagaggctgcggcagatgattacgagacttgtctaaggcacttagttaagagcaagattgtagacatctctaaagagagtggatttccaaaatttgatgtaatgcttttgggtatgggtccagacggacatatagcttccttgtttccggggcatcctcttgtccatgagaaagaaaagtgggtcaccttcatcaaggactctccaaaacctccaccgaacagaattacatttacattccctgtaataaactcatctgcaaatattgcacttgctatagtaggtgctgggaaggcagatgtagtgcagaaatcactaggcgatgataaaagttctgatctgctgcctgtgcagatggtttcacccgaaggagaattggtttggtatttagatatggatgcagcttcgaagctgtaaggatgaagacgtgtgagttgcgtattagtgtctcactcctgtctgtattttattattctaatacattctgaagaaaggttgtttttcccagtgttgtctgtctgtaaaatgttgaggattcatacactttttggcagttttttcctcacttgtttctgtaaagatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="83023" stop="86229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83323" g_stop="83454" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83455" i_stop="83527" i_length="73">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83528" g_stop="83663" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="268" r_length="136" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83664" i_stop="85331" i_length="1668">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85332" g_stop="85883" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="817" r_length="549" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E707284" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83323" e_stop="83454"/>
          <exon e_start="83528" e_stop="83663"/>
          <exon e_start="85332" e_stop="85883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGTACGATTCCGATGAGGAACTTGCTGTGGCTCTAGCGAAGTACACTGCTGATTTATCGGAGAAATTTTGTAAGGAGAGAGATGTTTTTACTGTGGTTGTTTCCGGTGGTTCACTTATCAAGTCTCTCAGGTATGATTGATTAATTCTCTTTGTTTCTTCTATGAATTGGGGAATTTTTTTGGGTTGCTAATGTTTATTGCAGGAAATTGGTGGAGCCACCATATATTGATTCAATAGACTGGTCCAAATGGCACGTTTTCTGGGTGGATGAGAGAGTGGTTCCAAAGGATCATCCTGACAGCAATTATTTGCTTGCTTATGATGGTTTTCTATCCAAGGTATATTTGCAGCCCTTCCTACAACATATTGATTTTATTTACTGCTGCCACAGTGTGTACTGTGTAGTTTCTTCATTAGCTTTCTACCCATTATATTTCACCTCTCCTCTGTGTATTTGTTGTTTTACCCCAACTTTTCTGATCTTTTGCTTGTTTGCCCAGTCAAAATGTGGGACGCAGTAGGTTTCTTGTACTAGTGATTTCTTCTCATCTGTTCAGTTAGATACCCCAAAGTACTAGTAGACATGCCCAGACAGCAGGTTATAAAAAAAAGTTAATCTTTTAAGTTTATCTTTTTTTTCTAGTTACGAGCAATGCTGATGGTCTCAATCTCCTTAACAAATAAGTTATAGGGGGTGGGGGGATGTGAACAGAGATTAAAGTGCACAGTATTGATGGAGAATACATCTAGAGGTATTCAGATTCTCATTCAACTCTGGATGAAATATTTGGGAAAATCAATTGAGAAAGTAATTATGTGAGGGCGTTAGGGCAGCGGTAACAAGGAATGCAAGTCATGCATACTATAAACATATCTTTTTCCGCAGTCCTTGAGATTAAGAAGTTAAGTAAGATAAGCCTGCTAATATATGGACGGAAGAAACAATCTCTACCTATATATATATATACATATTTGGGGGTGGTTTGGTTATATGTGACAAAGTCAAGCAATCTGTTTACATGATCATATCTATCATGGACCCAACTGTGCGAAGAAGCTGTATGTTAAATAAGTTTTAGATTACATTTTCTTAAGATATGTGATGATGTTACGCAATTCATGTAAAAACAAGAAACTAAAAAGAAAATCTTTGCACTGTATTGGAATAAACAGCTTCAAATTCACTTTTTTTTTTAGAAAACATTAAATTTTGCTTTGGTTAACAAAATTCTGATATAAAATTACTTCTTATAGAATCTGTCAGCCCCTGAAGCCCTCCTTAAACAACAACTGAGGTCCTTCTATTATTTTGTGTGTGTGGGGGGGGGGGGGGGGGTTATATTAAAATGATGGAGCATTAGCAAAATACTTCAAACATTTACCATGGTAGAGATTACTTAATGAGAAAGGATTTGGAAATTTTTGGGGCTAGAAGAGTTAAGCGGGGTTGAGGTTTAGAGGATCAACTGAAAAGTAATTATAACTTAAGCACAATTGTCAATTGAGCATGTTGGGAAACTTAAAGAGCAAAGAGTGTCCAACTCAATACCATGTGGAGCTGCCGATAAGATCAGTTGGACATTTTATGTTGACTTCGGTGAATTCCTTTTAATATAAGGATGAATAAGTGGGTTTGAATTACACCCTCAATGTTAACCTACTTACTTTCAGTTAAGTCTCTTCATTATCTCTAACAAGTTGGGTTGCCTTTACTTCTTGATTCTTACTTGGCAGTCTGACCAGCTCTTAAGCACAGACTATTTAAATAAAGATGGTTGTGAACTAAATTTATCCAATTTGTATCAGAAAAGATGTTTAGTGATGCATAGCTGCAAGGGCATCTTTTTGGATTTCAAATTGCTCATAGTACTGGCTTCACATGTGAACTGCCTACATTGTTTGATCTTATTATGAATGATGATAATTCTTACTTCATCATTATTCTCAGTTGACATCTTTAATTCTTTCTACCAAACTTCTAACCTCATCTTTACTTCTCTTGGCAGATACCTATTCCTGCTGGTAATGTGCATGCCATAAATGATGCATTATCAGCAGAGGCTGCGGCAGATGATTACGAGACTTGTCTAAGGCACTTAGTCAAGAGCAAGATACTTGACATCTCTGAAGAGAGTGGGTTTCCAAAATTTGATGTAATGCTATTGGGTATGGGTCCAGACGGACATGTAGCTTCCTTGTTTCCCGGGCATCCTCTTGTCCATGAGAAAGCGAAGTGGGTCACCTTCATCAAGGATTCTCCAAAACCTCCACCGAACAGGATTACATTTACATTCCCTGTAATAAACTCATCTGCAAATATTGCACTTGCTATAGTAGGTGCTGGTAAGGCAGATGTAGTGCATAAATCGCTAGGTGATGATAAAAGTTCTGATTTGCTGCCTGTGCAGATGGTTTCACCTGAAGGAGAATTAGTTTGGTTTTTAGACAAGGATGCAGCTTCGAAGCTGTAAGGATGAGGATATGTGAGCTGCGTATTTGTGCTTCACTCCTCTGTGTATTTTATTATTCTAATAATACATTCTGAAGAAGGGTTGTCT</genome_strand>
        <mrna_strand>ACTGTACGATTCCGAGGAGGAACTTGCTACGGCTCTAGCCAAGTACACTGCCGATTTATCGGAGAAATTTTGCAAAGAGAGAGATGCTTTTACTGTGGTTGTTTCTGGTGGTTCACTTATCAAGTCTCTCAG.........................................................................GAAATTGGTGGAGCCACCATATATTAATTCAATAGACTGGTCCAAATGGCACATTTTCTGGGTGGATGAGAGAGTGGTTCCAAAGGATCATCCTGACAGCAATTATTTGCTTGCTTATAATGGTTTTCTATCCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCTATTCCGGCTGGTCATGTGTATGCCATAAATGATGCATTATCAGCAGAGGCTGCGGCAGATGATTACGAGACTTGTCTAAGGCACTTAGTTAAGAGCAAGATTGTAGACATCTCTAAAGAGAGTGGATTTCCAAAATTTGATGTAATGCTTTTGGGTATGGGTCCAGACGGACATATAGCTTCCTTGTTTCCGGGGCATCCTCTTGTCCATGAGAAAGAAAAGTGGGTCACCTTCATCAAGGACTCTCCAAAACCTCCACCGAACAGAATTACATTTACATTCCCTGTAATAAACTCATCTGCAAATATTGCACTTGCTATAGTAGGTGCTGGGAAGGCAGATGTAGTGCAGAAATCACTAGGCGATGATAAAAGTTCTGATCTGCTGCCTGTGCAGATGGTTTCACCCGAAGGAGAATTGGTTTGGTATTTAGATATGGATGCAGCTTCGAAGCTGTAAGGATGAAGACGTGTGAGTTGCGTATTAGTGTCTCACTCCTGTCTGTATTTTATTATTC---TAATACATTCTGAAGAAAGGTTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707372" ref_strand="+" ref_description="SGN-E707372 [FA32DC08]">
      <seq>actgtacgattcctatgaggaacttgctacggctctagccaagtacactgccgatttatcggagaaattttgcaaagagagagatgcttttactgtggttgtttctggtggttcacttatcaagtctctcaggaaattggtggagccaccatatattaattcaatagactggtccaaatggcacattttctgggtggatgagagagtggttccaaaggatcatcctgacagcaattatttgcttgcttataatggttttctatccaagatacctattccggctggtcatgtgtatgccataaatgatgcattatcagcagaggctgcggcagatgattacgagacttgtctaaggcacttagttaagagcaagattgtacacatctctaaagagagtggatttccaaaatttgatgtaatgcttttgggtatgggtccagacggacatatagcttccttgtttccggggcatcctcttgtccatgagaaagaaaagtgggtcaccttcatcaaggactctccaaaacctccaccgaacagaattacatttacattccctgtaataaactcatctgcaaatattgcacttgctacagtaggtgctgggaaggcagatgtactgcagaaatcactaggcgatgataaaagttctgatctgctgcctgtgcacatggtttcaccccaaggagacttggtttggtatttagatatggatgcagcttcgaagctgtaaggatgaagacctgtgagttgcgtattagtgtctcactcctgtctgtattttattattccaatacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="83023" stop="86161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83323" g_stop="83454" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83455" i_stop="83527" i_length="73">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83528" g_stop="83663" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="268" r_length="136" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83664" i_stop="85331" i_length="1668">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85332" g_stop="85859" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="796" r_length="528" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E707372" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83323" e_stop="83454"/>
          <exon e_start="83528" e_stop="83663"/>
          <exon e_start="85332" e_stop="85859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGTACGATTCCGATGAGGAACTTGCTGTGGCTCTAGCGAAGTACACTGCTGATTTATCGGAGAAATTTTGTAAGGAGAGAGATGTTTTTACTGTGGTTGTTTCCGGTGGTTCACTTATCAAGTCTCTCAGGTATGATTGATTAATTCTCTTTGTTTCTTCTATGAATTGGGGAATTTTTTTGGGTTGCTAATGTTTATTGCAGGAAATTGGTGGAGCCACCATATATTGATTCAATAGACTGGTCCAAATGGCACGTTTTCTGGGTGGATGAGAGAGTGGTTCCAAAGGATCATCCTGACAGCAATTATTTGCTTGCTTATGATGGTTTTCTATCCAAGGTATATTTGCAGCCCTTCCTACAACATATTGATTTTATTTACTGCTGCCACAGTGTGTACTGTGTAGTTTCTTCATTAGCTTTCTACCCATTATATTTCACCTCTCCTCTGTGTATTTGTTGTTTTACCCCAACTTTTCTGATCTTTTGCTTGTTTGCCCAGTCAAAATGTGGGACGCAGTAGGTTTCTTGTACTAGTGATTTCTTCTCATCTGTTCAGTTAGATACCCCAAAGTACTAGTAGACATGCCCAGACAGCAGGTTATAAAAAAAAGTTAATCTTTTAAGTTTATCTTTTTTTTCTAGTTACGAGCAATGCTGATGGTCTCAATCTCCTTAACAAATAAGTTATAGGGGGTGGGGGGATGTGAACAGAGATTAAAGTGCACAGTATTGATGGAGAATACATCTAGAGGTATTCAGATTCTCATTCAACTCTGGATGAAATATTTGGGAAAATCAATTGAGAAAGTAATTATGTGAGGGCGTTAGGGCAGCGGTAACAAGGAATGCAAGTCATGCATACTATAAACATATCTTTTTCCGCAGTCCTTGAGATTAAGAAGTTAAGTAAGATAAGCCTGCTAATATATGGACGGAAGAAACAATCTCTACCTATATATATATATACATATTTGGGGGTGGTTTGGTTATATGTGACAAAGTCAAGCAATCTGTTTACATGATCATATCTATCATGGACCCAACTGTGCGAAGAAGCTGTATGTTAAATAAGTTTTAGATTACATTTTCTTAAGATATGTGATGATGTTACGCAATTCATGTAAAAACAAGAAACTAAAAAGAAAATCTTTGCACTGTATTGGAATAAACAGCTTCAAATTCACTTTTTTTTTTAGAAAACATTAAATTTTGCTTTGGTTAACAAAATTCTGATATAAAATTACTTCTTATAGAATCTGTCAGCCCCTGAAGCCCTCCTTAAACAACAACTGAGGTCCTTCTATTATTTTGTGTGTGTGGGGGGGGGGGGGGGGGTTATATTAAAATGATGGAGCATTAGCAAAATACTTCAAACATTTACCATGGTAGAGATTACTTAATGAGAAAGGATTTGGAAATTTTTGGGGCTAGAAGAGTTAAGCGGGGTTGAGGTTTAGAGGATCAACTGAAAAGTAATTATAACTTAAGCACAATTGTCAATTGAGCATGTTGGGAAACTTAAAGAGCAAAGAGTGTCCAACTCAATACCATGTGGAGCTGCCGATAAGATCAGTTGGACATTTTATGTTGACTTCGGTGAATTCCTTTTAATATAAGGATGAATAAGTGGGTTTGAATTACACCCTCAATGTTAACCTACTTACTTTCAGTTAAGTCTCTTCATTATCTCTAACAAGTTGGGTTGCCTTTACTTCTTGATTCTTACTTGGCAGTCTGACCAGCTCTTAAGCACAGACTATTTAAATAAAGATGGTTGTGAACTAAATTTATCCAATTTGTATCAGAAAAGATGTTTAGTGATGCATAGCTGCAAGGGCATCTTTTTGGATTTCAAATTGCTCATAGTACTGGCTTCACATGTGAACTGCCTACATTGTTTGATCTTATTATGAATGATGATAATTCTTACTTCATCATTATTCTCAGTTGACATCTTTAATTCTTTCTACCAAACTTCTAACCTCATCTTTACTTCTCTTGGCAGATACCTATTCCTGCTGGTAATGTGCATGCCATAAATGATGCATTATCAGCAGAGGCTGCGGCAGATGATTACGAGACTTGTCTAAGGCACTTAGTCAAGAGCAAGATACTTGACATCTCTGAAGAGAGTGGGTTTCCAAAATTTGATGTAATGCTATTGGGTATGGGTCCAGACGGACATGTAGCTTCCTTGTTTCCCGGGCATCCTCTTGTCCATGAGAAAGCGAAGTGGGTCACCTTCATCAAGGATTCTCCAAAACCTCCACCGAACAGGATTACATTTACATTCCCTGTAATAAACTCATCTGCAAATATTGCACTTGCTATAGTAGGTGCTGGTAAGGCAGATGTAGTGCATAAATCGCTAGGTGATGATAAAAGTTCTGATTTGCTGCCTGTGCAGATGGTTTCACCTGAAGGAGAATTAGTTTGGTTTTTAGACAAGGATGCAGCTTCGAAGCTGTAAGGATGAGGATATGTGAGCTGCGTATTTGTGCTTCACTCCTCTGTGTATTTTATTATTCTAATA</genome_strand>
        <mrna_strand>ACTGTACGATTCCTATGAGGAACTTGCTACGGCTCTAGCCAAGTACACTGCCGATTTATCGGAGAAATTTTGCAAAGAGAGAGATGCTTTTACTGTGGTTGTTTCTGGTGGTTCACTTATCAAGTCTCTCAG.........................................................................GAAATTGGTGGAGCCACCATATATTAATTCAATAGACTGGTCCAAATGGCACATTTTCTGGGTGGATGAGAGAGTGGTTCCAAAGGATCATCCTGACAGCAATTATTTGCTTGCTTATAATGGTTTTCTATCCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCTATTCCGGCTGGTCATGTGTATGCCATAAATGATGCATTATCAGCAGAGGCTGCGGCAGATGATTACGAGACTTGTCTAAGGCACTTAGTTAAGAGCAAGATTGTACACATCTCTAAAGAGAGTGGATTTCCAAAATTTGATGTAATGCTTTTGGGTATGGGTCCAGACGGACATATAGCTTCCTTGTTTCCGGGGCATCCTCTTGTCCATGAGAAAGAAAAGTGGGTCACCTTCATCAAGGACTCTCCAAAACCTCCACCGAACAGAATTACATTTACATTCCCTGTAATAAACTCATCTGCAAATATTGCACTTGCTACAGTAGGTGCTGGGAAGGCAGATGTACTGCAGAAATCACTAGGCGATGATAAAAGTTCTGATCTGCTGCCTGTGCACATGGTTTCACCCCAAGGAGACTTGGTTTGGTATTTAGATATGGATGCAGCTTCGAAGCTGTAAGGATGAAGACCTGTGAGTTGCGTATTAGTGTCTCACTCCTGTCTGTATTTTATTATTCCAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206801" ref_strand="+" ref_description="SGN-E206801 [cLEC-33-A9]">
      <seq>gaggaacttgctacggctctagccaagtacactgccgatttatcggagaaattttgcaaagagagagatgcttttactgtggttgtttctggtggctcacttatcaaggctctcaagaaattggtggagccaccatatattaattcaatagactggtccaaatggcacattttctgggtggatgagagagtggttccaaaggatcattctgacagcaattattagcttgcttataatggttttctatgcaagatacctattcccgctggtcatgtgtatgccataaatgatgcattatcagcagaggctgcggcagatgattaccagacttgtctaaggcacttagttaagagcaagattgctgacatctctaaagagagtggatttccaaaatttgatgcaatgcttttgggtgtgggtccagacggacatatagcttgcttgtttccggggcatcctcttgtccatgagaaagaaaagtgggtcaccttcatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="83039" stop="85875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83339" g_stop="83454" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83455" i_stop="83527" i_length="73">
            <donor d_prob="0.996" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83528" g_stop="83663" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="252" r_length="136" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83664" i_stop="85331" i_length="1668">
            <donor d_prob="0.994" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85332" g_stop="85575" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="496" r_length="244" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E206801" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83339" e_stop="83454"/>
          <exon e_start="83528" e_stop="83663"/>
          <exon e_start="85332" e_stop="85575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAACTTGCTGTGGCTCTAGCGAAGTACACTGCTGATTTATCGGAGAAATTTTGTAAGGAGAGAGATGTTTTTACTGTGGTTGTTTCCGGTGGTTCACTTATCAAGTCTCTCAGGTATGATTGATTAATTCTCTTTGTTTCTTCTATGAATTGGGGAATTTTTTTGGGTTGCTAATGTTTATTGCAGGAAATTGGTGGAGCCACCATATATTGATTCAATAGACTGGTCCAAATGGCACGTTTTCTGGGTGGATGAGAGAGTGGTTCCAAAGGATCATCCTGACAGCAATTATTTGCTTGCTTATGATGGTTTTCTATCCAAGGTATATTTGCAGCCCTTCCTACAACATATTGATTTTATTTACTGCTGCCACAGTGTGTACTGTGTAGTTTCTTCATTAGCTTTCTACCCATTATATTTCACCTCTCCTCTGTGTATTTGTTGTTTTACCCCAACTTTTCTGATCTTTTGCTTGTTTGCCCAGTCAAAATGTGGGACGCAGTAGGTTTCTTGTACTAGTGATTTCTTCTCATCTGTTCAGTTAGATACCCCAAAGTACTAGTAGACATGCCCAGACAGCAGGTTATAAAAAAAAGTTAATCTTTTAAGTTTATCTTTTTTTTCTAGTTACGAGCAATGCTGATGGTCTCAATCTCCTTAACAAATAAGTTATAGGGGGTGGGGGGATGTGAACAGAGATTAAAGTGCACAGTATTGATGGAGAATACATCTAGAGGTATTCAGATTCTCATTCAACTCTGGATGAAATATTTGGGAAAATCAATTGAGAAAGTAATTATGTGAGGGCGTTAGGGCAGCGGTAACAAGGAATGCAAGTCATGCATACTATAAACATATCTTTTTCCGCAGTCCTTGAGATTAAGAAGTTAAGTAAGATAAGCCTGCTAATATATGGACGGAAGAAACAATCTCTACCTATATATATATATACATATTTGGGGGTGGTTTGGTTATATGTGACAAAGTCAAGCAATCTGTTTACATGATCATATCTATCATGGACCCAACTGTGCGAAGAAGCTGTATGTTAAATAAGTTTTAGATTACATTTTCTTAAGATATGTGATGATGTTACGCAATTCATGTAAAAACAAGAAACTAAAAAGAAAATCTTTGCACTGTATTGGAATAAACAGCTTCAAATTCACTTTTTTTTTTAGAAAACATTAAATTTTGCTTTGGTTAACAAAATTCTGATATAAAATTACTTCTTATAGAATCTGTCAGCCCCTGAAGCCCTCCTTAAACAACAACTGAGGTCCTTCTATTATTTTGTGTGTGTGGGGGGGGGGGGGGGGGTTATATTAAAATGATGGAGCATTAGCAAAATACTTCAAACATTTACCATGGTAGAGATTACTTAATGAGAAAGGATTTGGAAATTTTTGGGGCTAGAAGAGTTAAGCGGGGTTGAGGTTTAGAGGATCAACTGAAAAGTAATTATAACTTAAGCACAATTGTCAATTGAGCATGTTGGGAAACTTAAAGAGCAAAGAGTGTCCAACTCAATACCATGTGGAGCTGCCGATAAGATCAGTTGGACATTTTATGTTGACTTCGGTGAATTCCTTTTAATATAAGGATGAATAAGTGGGTTTGAATTACACCCTCAATGTTAACCTACTTACTTTCAGTTAAGTCTCTTCATTATCTCTAACAAGTTGGGTTGCCTTTACTTCTTGATTCTTACTTGGCAGTCTGACCAGCTCTTAAGCACAGACTATTTAAATAAAGATGGTTGTGAACTAAATTTATCCAATTTGTATCAGAAAAGATGTTTAGTGATGCATAGCTGCAAGGGCATCTTTTTGGATTTCAAATTGCTCATAGTACTGGCTTCACATGTGAACTGCCTACATTGTTTGATCTTATTATGAATGATGATAATTCTTACTTCATCATTATTCTCAGTTGACATCTTTAATTCTTTCTACCAAACTTCTAACCTCATCTTTACTTCTCTTGGCAGATACCTATTCCTGCTGGTAATGTGCATGCCATAAATGATGCATTATCAGCAGAGGCTGCGGCAGATGATTACGAGACTTGTCTAAGGCACTTAGTCAAGAGCAAGATACTTGACATCTCTGAAGAGAGTGGGTTTCCAAAATTTGATGTAATGCTATTGGGTATGGGTCCAGACGGACATGTAGCTTCCTTGTTTCCCGGGCATCCTCTTGTCCATGAGAAAGCGAAGTGGGTCACCTTCATCA</genome_strand>
        <mrna_strand>GAGGAACTTGCTACGGCTCTAGCCAAGTACACTGCCGATTTATCGGAGAAATTTTGCAAAGAGAGAGATGCTTTTACTGTGGTTGTTTCTGGTGGCTCACTTATCAAGGCTCTCAA.........................................................................GAAATTGGTGGAGCCACCATATATTAATTCAATAGACTGGTCCAAATGGCACATTTTCTGGGTGGATGAGAGAGTGGTTCCAAAGGATCATTCTGACAGCAATTATTAGCTTGCTTATAATGGTTTTCTATGCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCTATTCCCGCTGGTCATGTGTATGCCATAAATGATGCATTATCAGCAGAGGCTGCGGCAGATGATTACCAGACTTGTCTAAGGCACTTAGTTAAGAGCAAGATTGCTGACATCTCTAAAGAGAGTGGATTTCCAAAATTTGATGCAATGCTTTTGGGTGTGGGTCCAGACGGACATATAGCTTGCTTGTTTCCGGGGCATCCTCTTGTCCATGAGAAAGAAAAGTGGGTCACCTTCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240097" ref_strand="+" ref_description="SGN-E240097 [cLED-32-E8]">
      <seq>gtggagccaccatatattgattcaatagactggtccaaatggcacgttttctgggtggatgagagagtggttccaaaggatcatcctgacagcaattatttgcttgcttatgatggttttctatccaagatacctattcctgctggtaatgtgcatgccataaatgatgcattatcagcagaggctgcggcagatgattacgagacttgtctaaggcacttagtcaagagcaagatacttgacatctctgaagagagtgggtttccaaaatttgatgtaatgctattgggtatgggtccagacggacatgtagcttccttgtttcccgggcatcctcttgtccatgagaaagcgaagtgggtcaccttcatcaaggattctccaaaacctccaccgaacaggattacatttacattccctgtaataaactcatctgcaaatattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="83235" stop="85947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83535" g_stop="83663" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83664" i_stop="85331" i_length="1668">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85332" g_stop="85647" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="445" r_length="316" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E240097" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83535" e_stop="83663"/>
          <exon e_start="85332" e_stop="85647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGAGCCACCATATATTGATTCAATAGACTGGTCCAAATGGCACGTTTTCTGGGTGGATGAGAGAGTGGTTCCAAAGGATCATCCTGACAGCAATTATTTGCTTGCTTATGATGGTTTTCTATCCAAGGTATATTTGCAGCCCTTCCTACAACATATTGATTTTATTTACTGCTGCCACAGTGTGTACTGTGTAGTTTCTTCATTAGCTTTCTACCCATTATATTTCACCTCTCCTCTGTGTATTTGTTGTTTTACCCCAACTTTTCTGATCTTTTGCTTGTTTGCCCAGTCAAAATGTGGGACGCAGTAGGTTTCTTGTACTAGTGATTTCTTCTCATCTGTTCAGTTAGATACCCCAAAGTACTAGTAGACATGCCCAGACAGCAGGTTATAAAAAAAAGTTAATCTTTTAAGTTTATCTTTTTTTTCTAGTTACGAGCAATGCTGATGGTCTCAATCTCCTTAACAAATAAGTTATAGGGGGTGGGGGGATGTGAACAGAGATTAAAGTGCACAGTATTGATGGAGAATACATCTAGAGGTATTCAGATTCTCATTCAACTCTGGATGAAATATTTGGGAAAATCAATTGAGAAAGTAATTATGTGAGGGCGTTAGGGCAGCGGTAACAAGGAATGCAAGTCATGCATACTATAAACATATCTTTTTCCGCAGTCCTTGAGATTAAGAAGTTAAGTAAGATAAGCCTGCTAATATATGGACGGAAGAAACAATCTCTACCTATATATATATATACATATTTGGGGGTGGTTTGGTTATATGTGACAAAGTCAAGCAATCTGTTTACATGATCATATCTATCATGGACCCAACTGTGCGAAGAAGCTGTATGTTAAATAAGTTTTAGATTACATTTTCTTAAGATATGTGATGATGTTACGCAATTCATGTAAAAACAAGAAACTAAAAAGAAAATCTTTGCACTGTATTGGAATAAACAGCTTCAAATTCACTTTTTTTTTTAGAAAACATTAAATTTTGCTTTGGTTAACAAAATTCTGATATAAAATTACTTCTTATAGAATCTGTCAGCCCCTGAAGCCCTCCTTAAACAACAACTGAGGTCCTTCTATTATTTTGTGTGTGTGGGGGGGGGGGGGGGGGTTATATTAAAATGATGGAGCATTAGCAAAATACTTCAAACATTTACCATGGTAGAGATTACTTAATGAGAAAGGATTTGGAAATTTTTGGGGCTAGAAGAGTTAAGCGGGGTTGAGGTTTAGAGGATCAACTGAAAAGTAATTATAACTTAAGCACAATTGTCAATTGAGCATGTTGGGAAACTTAAAGAGCAAAGAGTGTCCAACTCAATACCATGTGGAGCTGCCGATAAGATCAGTTGGACATTTTATGTTGACTTCGGTGAATTCCTTTTAATATAAGGATGAATAAGTGGGTTTGAATTACACCCTCAATGTTAACCTACTTACTTTCAGTTAAGTCTCTTCATTATCTCTAACAAGTTGGGTTGCCTTTACTTCTTGATTCTTACTTGGCAGTCTGACCAGCTCTTAAGCACAGACTATTTAAATAAAGATGGTTGTGAACTAAATTTATCCAATTTGTATCAGAAAAGATGTTTAGTGATGCATAGCTGCAAGGGCATCTTTTTGGATTTCAAATTGCTCATAGTACTGGCTTCACATGTGAACTGCCTACATTGTTTGATCTTATTATGAATGATGATAATTCTTACTTCATCATTATTCTCAGTTGACATCTTTAATTCTTTCTACCAAACTTCTAACCTCATCTTTACTTCTCTTGGCAGATACCTATTCCTGCTGGTAATGTGCATGCCATAAATGATGCATTATCAGCAGAGGCTGCGGCAGATGATTACGAGACTTGTCTAAGGCACTTAGTCAAGAGCAAGATACTTGACATCTCTGAAGAGAGTGGGTTTCCAAAATTTGATGTAATGCTATTGGGTATGGGTCCAGACGGACATGTAGCTTCCTTGTTTCCCGGGCATCCTCTTGTCCATGAGAAAGCGAAGTGGGTCACCTTCATCAAGGATTCTCCAAAACCTCCACCGAACAGGATTACATTTACATTCCCTGTAATAAACTCATCTGCAAATATTG</genome_strand>
        <mrna_strand>GTGGAGCCACCATATATTGATTCAATAGACTGGTCCAAATGGCACGTTTTCTGGGTGGATGAGAGAGTGGTTCCAAAGGATCATCCTGACAGCAATTATTTGCTTGCTTATGATGGTTTTCTATCCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCTATTCCTGCTGGTAATGTGCATGCCATAAATGATGCATTATCAGCAGAGGCTGCGGCAGATGATTACGAGACTTGTCTAAGGCACTTAGTCAAGAGCAAGATACTTGACATCTCTGAAGAGAGTGGGTTTCCAAAATTTGATGTAATGCTATTGGGTATGGGTCCAGACGGACATGTAGCTTCCTTGTTTCCCGGGCATCCTCTTGTCCATGAGAAAGCGAAGTGGGTCACCTTCATCAAGGATTCTCCAAAACCTCCACCGAACAGGATTACATTTACATTCCCTGTAATAAACTCATCTGCAAATATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231867" ref_strand="+" ref_description="SGN-E231867 [cLED-7-O10]">
      <seq>tgacagcaattatttgcttgcttataatggttttctatccaagatacctattccggctggtcatgtgtatgccataaatgatgcattatcagcagaggctgcggcagatgattacgagacttgtctaaggcacttagttaagagcaagattgtagacatctctaaagagagtggatttccaaaatttgatgtaatgcttttgggtatgggtccagacggacatatagcttccttgtttccggggcatcctcttgtccatgagaaagaaaagtgggtcaccttcatcaaggactctccaaaacctccaccgaacagaattacatttacattccctgtaataaactcatctgcaaatattgcacttgctatagtaggtgctgggaaggcagatgtagtgcagaaatcactaggcgatgataaaagttctgatctgctgcctgtgcagatggtttcacccgaaggagaattggtttggtatttagatatggatgcagcttcgaagctgtaaggatgaagacgtgtgagttgcgtattagtgtctcactcctgtctgtattttattattctaatacattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="83321" stop="86163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83621" g_stop="83663" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83664" i_stop="85331" i_length="1668">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85332" g_stop="85868" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="577" r_length="534" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E231867" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83621" e_stop="83663"/>
          <exon e_start="85332" e_stop="85868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACAGCAATTATTTGCTTGCTTATGATGGTTTTCTATCCAAGGTATATTTGCAGCCCTTCCTACAACATATTGATTTTATTTACTGCTGCCACAGTGTGTACTGTGTAGTTTCTTCATTAGCTTTCTACCCATTATATTTCACCTCTCCTCTGTGTATTTGTTGTTTTACCCCAACTTTTCTGATCTTTTGCTTGTTTGCCCAGTCAAAATGTGGGACGCAGTAGGTTTCTTGTACTAGTGATTTCTTCTCATCTGTTCAGTTAGATACCCCAAAGTACTAGTAGACATGCCCAGACAGCAGGTTATAAAAAAAAGTTAATCTTTTAAGTTTATCTTTTTTTTCTAGTTACGAGCAATGCTGATGGTCTCAATCTCCTTAACAAATAAGTTATAGGGGGTGGGGGGATGTGAACAGAGATTAAAGTGCACAGTATTGATGGAGAATACATCTAGAGGTATTCAGATTCTCATTCAACTCTGGATGAAATATTTGGGAAAATCAATTGAGAAAGTAATTATGTGAGGGCGTTAGGGCAGCGGTAACAAGGAATGCAAGTCATGCATACTATAAACATATCTTTTTCCGCAGTCCTTGAGATTAAGAAGTTAAGTAAGATAAGCCTGCTAATATATGGACGGAAGAAACAATCTCTACCTATATATATATATACATATTTGGGGGTGGTTTGGTTATATGTGACAAAGTCAAGCAATCTGTTTACATGATCATATCTATCATGGACCCAACTGTGCGAAGAAGCTGTATGTTAAATAAGTTTTAGATTACATTTTCTTAAGATATGTGATGATGTTACGCAATTCATGTAAAAACAAGAAACTAAAAAGAAAATCTTTGCACTGTATTGGAATAAACAGCTTCAAATTCACTTTTTTTTTTAGAAAACATTAAATTTTGCTTTGGTTAACAAAATTCTGATATAAAATTACTTCTTATAGAATCTGTCAGCCCCTGAAGCCCTCCTTAAACAACAACTGAGGTCCTTCTATTATTTTGTGTGTGTGGGGGGGGGGGGGGGGGTTATATTAAAATGATGGAGCATTAGCAAAATACTTCAAACATTTACCATGGTAGAGATTACTTAATGAGAAAGGATTTGGAAATTTTTGGGGCTAGAAGAGTTAAGCGGGGTTGAGGTTTAGAGGATCAACTGAAAAGTAATTATAACTTAAGCACAATTGTCAATTGAGCATGTTGGGAAACTTAAAGAGCAAAGAGTGTCCAACTCAATACCATGTGGAGCTGCCGATAAGATCAGTTGGACATTTTATGTTGACTTCGGTGAATTCCTTTTAATATAAGGATGAATAAGTGGGTTTGAATTACACCCTCAATGTTAACCTACTTACTTTCAGTTAAGTCTCTTCATTATCTCTAACAAGTTGGGTTGCCTTTACTTCTTGATTCTTACTTGGCAGTCTGACCAGCTCTTAAGCACAGACTATTTAAATAAAGATGGTTGTGAACTAAATTTATCCAATTTGTATCAGAAAAGATGTTTAGTGATGCATAGCTGCAAGGGCATCTTTTTGGATTTCAAATTGCTCATAGTACTGGCTTCACATGTGAACTGCCTACATTGTTTGATCTTATTATGAATGATGATAATTCTTACTTCATCATTATTCTCAGTTGACATCTTTAATTCTTTCTACCAAACTTCTAACCTCATCTTTACTTCTCTTGGCAGATACCTATTCCTGCTGGTAATGTGCATGCCATAAATGATGCATTATCAGCAGAGGCTGCGGCAGATGATTACGAGACTTGTCTAAGGCACTTAGTCAAGAGCAAGATACTTGACATCTCTGAAGAGAGTGGGTTTCCAAAATTTGATGTAATGCTATTGGGTATGGGTCCAGACGGACATGTAGCTTCCTTGTTTCCCGGGCATCCTCTTGTCCATGAGAAAGCGAAGTGGGTCACCTTCATCAAGGATTCTCCAAAACCTCCACCGAACAGGATTACATTTACATTCCCTGTAATAAACTCATCTGCAAATATTGCACTTGCTATAGTAGGTGCTGGTAAGGCAGATGTAGTGCATAAATCGCTAGGTGATGATAAAAGTTCTGATTTGCTGCCTGTGCAGATGGTTTCACCTGAAGGAGAATTAGTTTGGTTTTTAGACAAGGATGCAGCTTCGAAGCTGTAAGGATGAGGATATGTGAGCTGCGTATTTGTGCTTCACTCCTCTGTGTATTTTATTATTCTAATAATACATTCT</genome_strand>
        <mrna_strand>TGACAGCAATTATTTGCTTGCTTATAATGGTTTTCTATCCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCTATTCCGGCTGGTCATGTGTATGCCATAAATGATGCATTATCAGCAGAGGCTGCGGCAGATGATTACGAGACTTGTCTAAGGCACTTAGTTAAGAGCAAGATTGTAGACATCTCTAAAGAGAGTGGATTTCCAAAATTTGATGTAATGCTTTTGGGTATGGGTCCAGACGGACATATAGCTTCCTTGTTTCCGGGGCATCCTCTTGTCCATGAGAAAGAAAAGTGGGTCACCTTCATCAAGGACTCTCCAAAACCTCCACCGAACAGAATTACATTTACATTCCCTGTAATAAACTCATCTGCAAATATTGCACTTGCTATAGTAGGTGCTGGGAAGGCAGATGTAGTGCAGAAATCACTAGGCGATGATAAAAGTTCTGATCTGCTGCCTGTGCAGATGGTTTCACCCGAAGGAGAATTGGTTTGGTATTTAGATATGGATGCAGCTTCGAAGCTGTAAGGATGAAGACGTGTGAGTTGCGTATTAGTGTCTCACTCCTGTCTGTATTTTATTATTC---TAATACATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237988" ref_strand="+" ref_description="SGN-E237988 [cLED-18-J21]">
      <seq>tgacagcaattatttgcttgcttataatggttttctatccaagatacctattccggctggtcatgtgtatgccataaatgatgcattatcagcagaggctgcggcagatgattacgagacttgtctaaggcacttagttaagagcaagattgtagacatctctaaagagagtggatttccaaaatttgatgtaatgcttttgggtatgggtccagacggacatatagcttccttgtttccggggcatcctcttgtccatgagaaagaaaagtgggtcaccttcatcaaggactctccaaaacctccaccgaacagaattacatttacattccctgtaataaactcatctgcaaatattgcacttgctatagtaggtgctgggaaggcagatgtagtgcagaaatcactaggcgatgataaaagttctgatctgctgcctgtgcagatggtttcacccgaaggagaattggtttggtatttagatatggatgcagcttcgaagctgtaaggatgaagacgtgtgagttgcgtattagtgactcactcctgtctgtattttattattcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="83321" stop="86156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83621" g_stop="83663" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83664" i_stop="85331" i_length="1668">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85332" g_stop="85856" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="568" r_length="525" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E237988" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83621" e_stop="83663"/>
          <exon e_start="85332" e_stop="85856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACAGCAATTATTTGCTTGCTTATGATGGTTTTCTATCCAAGGTATATTTGCAGCCCTTCCTACAACATATTGATTTTATTTACTGCTGCCACAGTGTGTACTGTGTAGTTTCTTCATTAGCTTTCTACCCATTATATTTCACCTCTCCTCTGTGTATTTGTTGTTTTACCCCAACTTTTCTGATCTTTTGCTTGTTTGCCCAGTCAAAATGTGGGACGCAGTAGGTTTCTTGTACTAGTGATTTCTTCTCATCTGTTCAGTTAGATACCCCAAAGTACTAGTAGACATGCCCAGACAGCAGGTTATAAAAAAAAGTTAATCTTTTAAGTTTATCTTTTTTTTCTAGTTACGAGCAATGCTGATGGTCTCAATCTCCTTAACAAATAAGTTATAGGGGGTGGGGGGATGTGAACAGAGATTAAAGTGCACAGTATTGATGGAGAATACATCTAGAGGTATTCAGATTCTCATTCAACTCTGGATGAAATATTTGGGAAAATCAATTGAGAAAGTAATTATGTGAGGGCGTTAGGGCAGCGGTAACAAGGAATGCAAGTCATGCATACTATAAACATATCTTTTTCCGCAGTCCTTGAGATTAAGAAGTTAAGTAAGATAAGCCTGCTAATATATGGACGGAAGAAACAATCTCTACCTATATATATATATACATATTTGGGGGTGGTTTGGTTATATGTGACAAAGTCAAGCAATCTGTTTACATGATCATATCTATCATGGACCCAACTGTGCGAAGAAGCTGTATGTTAAATAAGTTTTAGATTACATTTTCTTAAGATATGTGATGATGTTACGCAATTCATGTAAAAACAAGAAACTAAAAAGAAAATCTTTGCACTGTATTGGAATAAACAGCTTCAAATTCACTTTTTTTTTTAGAAAACATTAAATTTTGCTTTGGTTAACAAAATTCTGATATAAAATTACTTCTTATAGAATCTGTCAGCCCCTGAAGCCCTCCTTAAACAACAACTGAGGTCCTTCTATTATTTTGTGTGTGTGGGGGGGGGGGGGGGGGTTATATTAAAATGATGGAGCATTAGCAAAATACTTCAAACATTTACCATGGTAGAGATTACTTAATGAGAAAGGATTTGGAAATTTTTGGGGCTAGAAGAGTTAAGCGGGGTTGAGGTTTAGAGGATCAACTGAAAAGTAATTATAACTTAAGCACAATTGTCAATTGAGCATGTTGGGAAACTTAAAGAGCAAAGAGTGTCCAACTCAATACCATGTGGAGCTGCCGATAAGATCAGTTGGACATTTTATGTTGACTTCGGTGAATTCCTTTTAATATAAGGATGAATAAGTGGGTTTGAATTACACCCTCAATGTTAACCTACTTACTTTCAGTTAAGTCTCTTCATTATCTCTAACAAGTTGGGTTGCCTTTACTTCTTGATTCTTACTTGGCAGTCTGACCAGCTCTTAAGCACAGACTATTTAAATAAAGATGGTTGTGAACTAAATTTATCCAATTTGTATCAGAAAAGATGTTTAGTGATGCATAGCTGCAAGGGCATCTTTTTGGATTTCAAATTGCTCATAGTACTGGCTTCACATGTGAACTGCCTACATTGTTTGATCTTATTATGAATGATGATAATTCTTACTTCATCATTATTCTCAGTTGACATCTTTAATTCTTTCTACCAAACTTCTAACCTCATCTTTACTTCTCTTGGCAGATACCTATTCCTGCTGGTAATGTGCATGCCATAAATGATGCATTATCAGCAGAGGCTGCGGCAGATGATTACGAGACTTGTCTAAGGCACTTAGTCAAGAGCAAGATACTTGACATCTCTGAAGAGAGTGGGTTTCCAAAATTTGATGTAATGCTATTGGGTATGGGTCCAGACGGACATGTAGCTTCCTTGTTTCCCGGGCATCCTCTTGTCCATGAGAAAGCGAAGTGGGTCACCTTCATCAAGGATTCTCCAAAACCTCCACCGAACAGGATTACATTTACATTCCCTGTAATAAACTCATCTGCAAATATTGCACTTGCTATAGTAGGTGCTGGTAAGGCAGATGTAGTGCATAAATCGCTAGGTGATGATAAAAGTTCTGATTTGCTGCCTGTGCAGATGGTTTCACCTGAAGGAGAATTAGTTTGGTTTTTAGACAAGGATGCAGCTTCGAAGCTGTAAGGATGAGGATATGTGAGCTGCGTATTTGTGCTTCACTCCTCTGTGTATTTTATTATTCTA</genome_strand>
        <mrna_strand>TGACAGCAATTATTTGCTTGCTTATAATGGTTTTCTATCCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCTATTCCGGCTGGTCATGTGTATGCCATAAATGATGCATTATCAGCAGAGGCTGCGGCAGATGATTACGAGACTTGTCTAAGGCACTTAGTTAAGAGCAAGATTGTAGACATCTCTAAAGAGAGTGGATTTCCAAAATTTGATGTAATGCTTTTGGGTATGGGTCCAGACGGACATATAGCTTCCTTGTTTCCGGGGCATCCTCTTGTCCATGAGAAAGAAAAGTGGGTCACCTTCATCAAGGACTCTCCAAAACCTCCACCGAACAGAATTACATTTACATTCCCTGTAATAAACTCATCTGCAAATATTGCACTTGCTATAGTAGGTGCTGGGAAGGCAGATGTAGTGCAGAAATCACTAGGCGATGATAAAAGTTCTGATCTGCTGCCTGTGCAGATGGTTTCACCCGAAGGAGAATTGGTTTGGTATTTAGATATGGATGCAGCTTCGAAGCTGTAAGGATGAAGACGTGTGAGTTGCGTATTAGTGACTCACTCCTGTCTGTATTTTATTATTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233401" ref_strand="+" ref_description="SGN-E233401 [cLED-9-D9]">
      <seq>tgacagcaattatttgcttgcttataatggttttctatccaagatacctattccggctggtcatgtgtatgccataaatgatgcattatcagcagaggctgcggcagatgattacgagacttgtctaaggcacttagttaagagcaagattgtagacatctctaaagagagtggatttccaaaatttgatgtaatgcttttgggtatgggtccagacggacatatagcttccttgtttccggggcatcctcttgtccatgagaaagaaaagtgggtcaccttcatcaaggactctccaaaacctccaccgaacagaattacatttacattccctgtaataaactcatctgcaaatattgcacttgctatagtaggtgctgggaaggcagatgtagtgcagaaatcactaggcgatgataaaagttctgatctgctgcctgtgcagatggtttcacccgaaggagaattggtttggtatttagatatggatgcagcttcgaagctgtaaggatgaagacgtgtgagttgcgtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="83321" stop="86122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83621" g_stop="83663" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83664" i_stop="85331" i_length="1668">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85332" g_stop="85822" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="534" r_length="491" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E233401" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83621" e_stop="83663"/>
          <exon e_start="85332" e_stop="85822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACAGCAATTATTTGCTTGCTTATGATGGTTTTCTATCCAAGGTATATTTGCAGCCCTTCCTACAACATATTGATTTTATTTACTGCTGCCACAGTGTGTACTGTGTAGTTTCTTCATTAGCTTTCTACCCATTATATTTCACCTCTCCTCTGTGTATTTGTTGTTTTACCCCAACTTTTCTGATCTTTTGCTTGTTTGCCCAGTCAAAATGTGGGACGCAGTAGGTTTCTTGTACTAGTGATTTCTTCTCATCTGTTCAGTTAGATACCCCAAAGTACTAGTAGACATGCCCAGACAGCAGGTTATAAAAAAAAGTTAATCTTTTAAGTTTATCTTTTTTTTCTAGTTACGAGCAATGCTGATGGTCTCAATCTCCTTAACAAATAAGTTATAGGGGGTGGGGGGATGTGAACAGAGATTAAAGTGCACAGTATTGATGGAGAATACATCTAGAGGTATTCAGATTCTCATTCAACTCTGGATGAAATATTTGGGAAAATCAATTGAGAAAGTAATTATGTGAGGGCGTTAGGGCAGCGGTAACAAGGAATGCAAGTCATGCATACTATAAACATATCTTTTTCCGCAGTCCTTGAGATTAAGAAGTTAAGTAAGATAAGCCTGCTAATATATGGACGGAAGAAACAATCTCTACCTATATATATATATACATATTTGGGGGTGGTTTGGTTATATGTGACAAAGTCAAGCAATCTGTTTACATGATCATATCTATCATGGACCCAACTGTGCGAAGAAGCTGTATGTTAAATAAGTTTTAGATTACATTTTCTTAAGATATGTGATGATGTTACGCAATTCATGTAAAAACAAGAAACTAAAAAGAAAATCTTTGCACTGTATTGGAATAAACAGCTTCAAATTCACTTTTTTTTTTAGAAAACATTAAATTTTGCTTTGGTTAACAAAATTCTGATATAAAATTACTTCTTATAGAATCTGTCAGCCCCTGAAGCCCTCCTTAAACAACAACTGAGGTCCTTCTATTATTTTGTGTGTGTGGGGGGGGGGGGGGGGGTTATATTAAAATGATGGAGCATTAGCAAAATACTTCAAACATTTACCATGGTAGAGATTACTTAATGAGAAAGGATTTGGAAATTTTTGGGGCTAGAAGAGTTAAGCGGGGTTGAGGTTTAGAGGATCAACTGAAAAGTAATTATAACTTAAGCACAATTGTCAATTGAGCATGTTGGGAAACTTAAAGAGCAAAGAGTGTCCAACTCAATACCATGTGGAGCTGCCGATAAGATCAGTTGGACATTTTATGTTGACTTCGGTGAATTCCTTTTAATATAAGGATGAATAAGTGGGTTTGAATTACACCCTCAATGTTAACCTACTTACTTTCAGTTAAGTCTCTTCATTATCTCTAACAAGTTGGGTTGCCTTTACTTCTTGATTCTTACTTGGCAGTCTGACCAGCTCTTAAGCACAGACTATTTAAATAAAGATGGTTGTGAACTAAATTTATCCAATTTGTATCAGAAAAGATGTTTAGTGATGCATAGCTGCAAGGGCATCTTTTTGGATTTCAAATTGCTCATAGTACTGGCTTCACATGTGAACTGCCTACATTGTTTGATCTTATTATGAATGATGATAATTCTTACTTCATCATTATTCTCAGTTGACATCTTTAATTCTTTCTACCAAACTTCTAACCTCATCTTTACTTCTCTTGGCAGATACCTATTCCTGCTGGTAATGTGCATGCCATAAATGATGCATTATCAGCAGAGGCTGCGGCAGATGATTACGAGACTTGTCTAAGGCACTTAGTCAAGAGCAAGATACTTGACATCTCTGAAGAGAGTGGGTTTCCAAAATTTGATGTAATGCTATTGGGTATGGGTCCAGACGGACATGTAGCTTCCTTGTTTCCCGGGCATCCTCTTGTCCATGAGAAAGCGAAGTGGGTCACCTTCATCAAGGATTCTCCAAAACCTCCACCGAACAGGATTACATTTACATTCCCTGTAATAAACTCATCTGCAAATATTGCACTTGCTATAGTAGGTGCTGGTAAGGCAGATGTAGTGCATAAATCGCTAGGTGATGATAAAAGTTCTGATTTGCTGCCTGTGCAGATGGTTTCACCTGAAGGAGAATTAGTTTGGTTTTTAGACAAGGATGCAGCTTCGAAGCTGTAAGGATGAGGATATGTGAGCTGCGTATT</genome_strand>
        <mrna_strand>TGACAGCAATTATTTGCTTGCTTATAATGGTTTTCTATCCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCTATTCCGGCTGGTCATGTGTATGCCATAAATGATGCATTATCAGCAGAGGCTGCGGCAGATGATTACGAGACTTGTCTAAGGCACTTAGTTAAGAGCAAGATTGTAGACATCTCTAAAGAGAGTGGATTTCCAAAATTTGATGTAATGCTTTTGGGTATGGGTCCAGACGGACATATAGCTTCCTTGTTTCCGGGGCATCCTCTTGTCCATGAGAAAGAAAAGTGGGTCACCTTCATCAAGGACTCTCCAAAACCTCCACCGAACAGAATTACATTTACATTCCCTGTAATAAACTCATCTGCAAATATTGCACTTGCTATAGTAGGTGCTGGGAAGGCAGATGTAGTGCAGAAATCACTAGGCGATGATAAAAGTTCTGATCTGCTGCCTGTGCAGATGGTTTCACCCGAAGGAGAATTGGTTTGGTATTTAGATATGGATGCAGCTTCGAAGCTGTAAGGATGAAGACGTGTGAGTTGCGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238044" ref_strand="+" ref_description="SGN-E238044 [cLED-18-P10]">
      <seq>tgacagcaattatttgcttgcttataatggttgtctatccgagatacctattccggctggtcatgtgtgtgccataaatgatgcattatcagcagaggctgcggcagatgattacgagacttgtctaaggcacttagttaagagcaagattgtagacatctctaaagagagtggatttccaaaatttgatgtaatgcttttgggtatgggtccagacggacatatagcttccttgtttccggggcatcctcttgtccatgagaaagaaaagtgggtcaccttcatcaaggactctccaaaacctccaccgaacagaattacatttacattccctgtaataaactcatctgcaaatattgcacttgctatagtaggtgctgggaaggcagatgtagtgcagaaatcactaggcgatgataaaagttctgatctgctgcctgtgcagatggtttcacccgaaggagaattggtttggtatttagatatggatgcagcttcgaagctgtaaggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="83321" stop="86100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83621" g_stop="83663" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83664" i_stop="85331" i_length="1668">
            <donor d_prob="0.994" d_score="0.93"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85332" g_stop="85800" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="512" r_length="469" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E238044" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83621" e_stop="83663"/>
          <exon e_start="85332" e_stop="85800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACAGCAATTATTTGCTTGCTTATGATGGTTTTCTATCCAAGGTATATTTGCAGCCCTTCCTACAACATATTGATTTTATTTACTGCTGCCACAGTGTGTACTGTGTAGTTTCTTCATTAGCTTTCTACCCATTATATTTCACCTCTCCTCTGTGTATTTGTTGTTTTACCCCAACTTTTCTGATCTTTTGCTTGTTTGCCCAGTCAAAATGTGGGACGCAGTAGGTTTCTTGTACTAGTGATTTCTTCTCATCTGTTCAGTTAGATACCCCAAAGTACTAGTAGACATGCCCAGACAGCAGGTTATAAAAAAAAGTTAATCTTTTAAGTTTATCTTTTTTTTCTAGTTACGAGCAATGCTGATGGTCTCAATCTCCTTAACAAATAAGTTATAGGGGGTGGGGGGATGTGAACAGAGATTAAAGTGCACAGTATTGATGGAGAATACATCTAGAGGTATTCAGATTCTCATTCAACTCTGGATGAAATATTTGGGAAAATCAATTGAGAAAGTAATTATGTGAGGGCGTTAGGGCAGCGGTAACAAGGAATGCAAGTCATGCATACTATAAACATATCTTTTTCCGCAGTCCTTGAGATTAAGAAGTTAAGTAAGATAAGCCTGCTAATATATGGACGGAAGAAACAATCTCTACCTATATATATATATACATATTTGGGGGTGGTTTGGTTATATGTGACAAAGTCAAGCAATCTGTTTACATGATCATATCTATCATGGACCCAACTGTGCGAAGAAGCTGTATGTTAAATAAGTTTTAGATTACATTTTCTTAAGATATGTGATGATGTTACGCAATTCATGTAAAAACAAGAAACTAAAAAGAAAATCTTTGCACTGTATTGGAATAAACAGCTTCAAATTCACTTTTTTTTTTAGAAAACATTAAATTTTGCTTTGGTTAACAAAATTCTGATATAAAATTACTTCTTATAGAATCTGTCAGCCCCTGAAGCCCTCCTTAAACAACAACTGAGGTCCTTCTATTATTTTGTGTGTGTGGGGGGGGGGGGGGGGGTTATATTAAAATGATGGAGCATTAGCAAAATACTTCAAACATTTACCATGGTAGAGATTACTTAATGAGAAAGGATTTGGAAATTTTTGGGGCTAGAAGAGTTAAGCGGGGTTGAGGTTTAGAGGATCAACTGAAAAGTAATTATAACTTAAGCACAATTGTCAATTGAGCATGTTGGGAAACTTAAAGAGCAAAGAGTGTCCAACTCAATACCATGTGGAGCTGCCGATAAGATCAGTTGGACATTTTATGTTGACTTCGGTGAATTCCTTTTAATATAAGGATGAATAAGTGGGTTTGAATTACACCCTCAATGTTAACCTACTTACTTTCAGTTAAGTCTCTTCATTATCTCTAACAAGTTGGGTTGCCTTTACTTCTTGATTCTTACTTGGCAGTCTGACCAGCTCTTAAGCACAGACTATTTAAATAAAGATGGTTGTGAACTAAATTTATCCAATTTGTATCAGAAAAGATGTTTAGTGATGCATAGCTGCAAGGGCATCTTTTTGGATTTCAAATTGCTCATAGTACTGGCTTCACATGTGAACTGCCTACATTGTTTGATCTTATTATGAATGATGATAATTCTTACTTCATCATTATTCTCAGTTGACATCTTTAATTCTTTCTACCAAACTTCTAACCTCATCTTTACTTCTCTTGGCAGATACCTATTCCTGCTGGTAATGTGCATGCCATAAATGATGCATTATCAGCAGAGGCTGCGGCAGATGATTACGAGACTTGTCTAAGGCACTTAGTCAAGAGCAAGATACTTGACATCTCTGAAGAGAGTGGGTTTCCAAAATTTGATGTAATGCTATTGGGTATGGGTCCAGACGGACATGTAGCTTCCTTGTTTCCCGGGCATCCTCTTGTCCATGAGAAAGCGAAGTGGGTCACCTTCATCAAGGATTCTCCAAAACCTCCACCGAACAGGATTACATTTACATTCCCTGTAATAAACTCATCTGCAAATATTGCACTTGCTATAGTAGGTGCTGGTAAGGCAGATGTAGTGCATAAATCGCTAGGTGATGATAAAAGTTCTGATTTGCTGCCTGTGCAGATGGTTTCACCTGAAGGAGAATTAGTTTGGTTTTTAGACAAGGATGCAGCTTCGAAGCTGTAAGGAT</genome_strand>
        <mrna_strand>TGACAGCAATTATTTGCTTGCTTATAATGGTTGTCTATCCGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCTATTCCGGCTGGTCATGTGTGTGCCATAAATGATGCATTATCAGCAGAGGCTGCGGCAGATGATTACGAGACTTGTCTAAGGCACTTAGTTAAGAGCAAGATTGTAGACATCTCTAAAGAGAGTGGATTTCCAAAATTTGATGTAATGCTTTTGGGTATGGGTCCAGACGGACATATAGCTTCCTTGTTTCCGGGGCATCCTCTTGTCCATGAGAAAGAAAAGTGGGTCACCTTCATCAAGGACTCTCCAAAACCTCCACCGAACAGAATTACATTTACATTCCCTGTAATAAACTCATCTGCAAATATTGCACTTGCTATAGTAGGTGCTGGGAAGGCAGATGTAGTGCAGAAATCACTAGGCGATGATAAAAGTTCTGATCTGCTGCCTGTGCAGATGGTTTCACCCGAAGGAGAATTGGTTTGGTATTTAGATATGGATGCAGCTTCGAAGCTGTAAGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231432" ref_strand="+" ref_description="SGN-E231432 [cLED-4-G17]">
      <seq>tgacagcaattatttgcttgcttataatggttttctatccaagatacctattccggctggtcatgtgtatgccataaatgatgcattatcagcagaggctgcggcagatgattacgagacttgtctaaggcacttagttaagagcaagattgtagacatctctaaagagagtggatttccaaaatttgatgtaatgcttttgggtatgggtccagacggacatatagcttccttgtttccggggcatcctcttgtccatgagaaagaaaagtgggtcaccttcatcaaggactctccaaaacctccaccgaacagaattacatttacattccctgtaataaactcatctgcaaatattgcacttgctatagtaggtgctgggaaggcagatgtagtgcagaaatcactaggcgatgataaaagttctgatctgctgcctgtgcagatggtttcacccgaaggagaattggtttggtatttagatatggatgcagcttcgaagctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="83321" stop="86094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83621" g_stop="83663" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83664" i_stop="85331" i_length="1668">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85332" g_stop="85794" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="506" r_length="463" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E231432" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83621" e_stop="83663"/>
          <exon e_start="85332" e_stop="85794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACAGCAATTATTTGCTTGCTTATGATGGTTTTCTATCCAAGGTATATTTGCAGCCCTTCCTACAACATATTGATTTTATTTACTGCTGCCACAGTGTGTACTGTGTAGTTTCTTCATTAGCTTTCTACCCATTATATTTCACCTCTCCTCTGTGTATTTGTTGTTTTACCCCAACTTTTCTGATCTTTTGCTTGTTTGCCCAGTCAAAATGTGGGACGCAGTAGGTTTCTTGTACTAGTGATTTCTTCTCATCTGTTCAGTTAGATACCCCAAAGTACTAGTAGACATGCCCAGACAGCAGGTTATAAAAAAAAGTTAATCTTTTAAGTTTATCTTTTTTTTCTAGTTACGAGCAATGCTGATGGTCTCAATCTCCTTAACAAATAAGTTATAGGGGGTGGGGGGATGTGAACAGAGATTAAAGTGCACAGTATTGATGGAGAATACATCTAGAGGTATTCAGATTCTCATTCAACTCTGGATGAAATATTTGGGAAAATCAATTGAGAAAGTAATTATGTGAGGGCGTTAGGGCAGCGGTAACAAGGAATGCAAGTCATGCATACTATAAACATATCTTTTTCCGCAGTCCTTGAGATTAAGAAGTTAAGTAAGATAAGCCTGCTAATATATGGACGGAAGAAACAATCTCTACCTATATATATATATACATATTTGGGGGTGGTTTGGTTATATGTGACAAAGTCAAGCAATCTGTTTACATGATCATATCTATCATGGACCCAACTGTGCGAAGAAGCTGTATGTTAAATAAGTTTTAGATTACATTTTCTTAAGATATGTGATGATGTTACGCAATTCATGTAAAAACAAGAAACTAAAAAGAAAATCTTTGCACTGTATTGGAATAAACAGCTTCAAATTCACTTTTTTTTTTAGAAAACATTAAATTTTGCTTTGGTTAACAAAATTCTGATATAAAATTACTTCTTATAGAATCTGTCAGCCCCTGAAGCCCTCCTTAAACAACAACTGAGGTCCTTCTATTATTTTGTGTGTGTGGGGGGGGGGGGGGGGGTTATATTAAAATGATGGAGCATTAGCAAAATACTTCAAACATTTACCATGGTAGAGATTACTTAATGAGAAAGGATTTGGAAATTTTTGGGGCTAGAAGAGTTAAGCGGGGTTGAGGTTTAGAGGATCAACTGAAAAGTAATTATAACTTAAGCACAATTGTCAATTGAGCATGTTGGGAAACTTAAAGAGCAAAGAGTGTCCAACTCAATACCATGTGGAGCTGCCGATAAGATCAGTTGGACATTTTATGTTGACTTCGGTGAATTCCTTTTAATATAAGGATGAATAAGTGGGTTTGAATTACACCCTCAATGTTAACCTACTTACTTTCAGTTAAGTCTCTTCATTATCTCTAACAAGTTGGGTTGCCTTTACTTCTTGATTCTTACTTGGCAGTCTGACCAGCTCTTAAGCACAGACTATTTAAATAAAGATGGTTGTGAACTAAATTTATCCAATTTGTATCAGAAAAGATGTTTAGTGATGCATAGCTGCAAGGGCATCTTTTTGGATTTCAAATTGCTCATAGTACTGGCTTCACATGTGAACTGCCTACATTGTTTGATCTTATTATGAATGATGATAATTCTTACTTCATCATTATTCTCAGTTGACATCTTTAATTCTTTCTACCAAACTTCTAACCTCATCTTTACTTCTCTTGGCAGATACCTATTCCTGCTGGTAATGTGCATGCCATAAATGATGCATTATCAGCAGAGGCTGCGGCAGATGATTACGAGACTTGTCTAAGGCACTTAGTCAAGAGCAAGATACTTGACATCTCTGAAGAGAGTGGGTTTCCAAAATTTGATGTAATGCTATTGGGTATGGGTCCAGACGGACATGTAGCTTCCTTGTTTCCCGGGCATCCTCTTGTCCATGAGAAAGCGAAGTGGGTCACCTTCATCAAGGATTCTCCAAAACCTCCACCGAACAGGATTACATTTACATTCCCTGTAATAAACTCATCTGCAAATATTGCACTTGCTATAGTAGGTGCTGGTAAGGCAGATGTAGTGCATAAATCGCTAGGTGATGATAAAAGTTCTGATTTGCTGCCTGTGCAGATGGTTTCACCTGAAGGAGAATTAGTTTGGTTTTTAGACAAGGATGCAGCTTCGAAGCTGT</genome_strand>
        <mrna_strand>TGACAGCAATTATTTGCTTGCTTATAATGGTTTTCTATCCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCTATTCCGGCTGGTCATGTGTATGCCATAAATGATGCATTATCAGCAGAGGCTGCGGCAGATGATTACGAGACTTGTCTAAGGCACTTAGTTAAGAGCAAGATTGTAGACATCTCTAAAGAGAGTGGATTTCCAAAATTTGATGTAATGCTTTTGGGTATGGGTCCAGACGGACATATAGCTTCCTTGTTTCCGGGGCATCCTCTTGTCCATGAGAAAGAAAAGTGGGTCACCTTCATCAAGGACTCTCCAAAACCTCCACCGAACAGAATTACATTTACATTCCCTGTAATAAACTCATCTGCAAATATTGCACTTGCTATAGTAGGTGCTGGGAAGGCAGATGTAGTGCAGAAATCACTAGGCGATGATAAAAGTTCTGATCTGCTGCCTGTGCAGATGGTTTCACCCGAAGGAGAATTGGTTTGGTATTTAGATATGGATGCAGCTTCGAAGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239908" ref_strand="+" ref_description="SGN-E239908 [cLED-29-I13]">
      <seq>tgacagcaattatttgcttgcttataatggttttctatccaagatacctattccggctggtcatgtgtatgccataaatgatgcattatcagcagaggctgcggcagatgattacgagacttgtctaaggcacttagttaagagcaagattgtagacatctctaaagagagtggatttccaaaatttgatgtaatgcttttgggtatgggtccagacggacatatagcttccttgtttccggggcatcctcttgtccatgagaaagaaaagtgggtcaccttcatcaaggactctccaaaacctccaccgaacagaattacatttacattccctgtaataaactcatctgcaaatattgcacttgctatagtaggtgctgggaaggcagatgtagtgcagaaatcactaggcgatgataaaagttctgatctgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="83321" stop="86024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83621" g_stop="83663" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83664" i_stop="85331" i_length="1668">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85332" g_stop="85724" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="436" r_length="393" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E239908" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83621" e_stop="83663"/>
          <exon e_start="85332" e_stop="85724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACAGCAATTATTTGCTTGCTTATGATGGTTTTCTATCCAAGGTATATTTGCAGCCCTTCCTACAACATATTGATTTTATTTACTGCTGCCACAGTGTGTACTGTGTAGTTTCTTCATTAGCTTTCTACCCATTATATTTCACCTCTCCTCTGTGTATTTGTTGTTTTACCCCAACTTTTCTGATCTTTTGCTTGTTTGCCCAGTCAAAATGTGGGACGCAGTAGGTTTCTTGTACTAGTGATTTCTTCTCATCTGTTCAGTTAGATACCCCAAAGTACTAGTAGACATGCCCAGACAGCAGGTTATAAAAAAAAGTTAATCTTTTAAGTTTATCTTTTTTTTCTAGTTACGAGCAATGCTGATGGTCTCAATCTCCTTAACAAATAAGTTATAGGGGGTGGGGGGATGTGAACAGAGATTAAAGTGCACAGTATTGATGGAGAATACATCTAGAGGTATTCAGATTCTCATTCAACTCTGGATGAAATATTTGGGAAAATCAATTGAGAAAGTAATTATGTGAGGGCGTTAGGGCAGCGGTAACAAGGAATGCAAGTCATGCATACTATAAACATATCTTTTTCCGCAGTCCTTGAGATTAAGAAGTTAAGTAAGATAAGCCTGCTAATATATGGACGGAAGAAACAATCTCTACCTATATATATATATACATATTTGGGGGTGGTTTGGTTATATGTGACAAAGTCAAGCAATCTGTTTACATGATCATATCTATCATGGACCCAACTGTGCGAAGAAGCTGTATGTTAAATAAGTTTTAGATTACATTTTCTTAAGATATGTGATGATGTTACGCAATTCATGTAAAAACAAGAAACTAAAAAGAAAATCTTTGCACTGTATTGGAATAAACAGCTTCAAATTCACTTTTTTTTTTAGAAAACATTAAATTTTGCTTTGGTTAACAAAATTCTGATATAAAATTACTTCTTATAGAATCTGTCAGCCCCTGAAGCCCTCCTTAAACAACAACTGAGGTCCTTCTATTATTTTGTGTGTGTGGGGGGGGGGGGGGGGGTTATATTAAAATGATGGAGCATTAGCAAAATACTTCAAACATTTACCATGGTAGAGATTACTTAATGAGAAAGGATTTGGAAATTTTTGGGGCTAGAAGAGTTAAGCGGGGTTGAGGTTTAGAGGATCAACTGAAAAGTAATTATAACTTAAGCACAATTGTCAATTGAGCATGTTGGGAAACTTAAAGAGCAAAGAGTGTCCAACTCAATACCATGTGGAGCTGCCGATAAGATCAGTTGGACATTTTATGTTGACTTCGGTGAATTCCTTTTAATATAAGGATGAATAAGTGGGTTTGAATTACACCCTCAATGTTAACCTACTTACTTTCAGTTAAGTCTCTTCATTATCTCTAACAAGTTGGGTTGCCTTTACTTCTTGATTCTTACTTGGCAGTCTGACCAGCTCTTAAGCACAGACTATTTAAATAAAGATGGTTGTGAACTAAATTTATCCAATTTGTATCAGAAAAGATGTTTAGTGATGCATAGCTGCAAGGGCATCTTTTTGGATTTCAAATTGCTCATAGTACTGGCTTCACATGTGAACTGCCTACATTGTTTGATCTTATTATGAATGATGATAATTCTTACTTCATCATTATTCTCAGTTGACATCTTTAATTCTTTCTACCAAACTTCTAACCTCATCTTTACTTCTCTTGGCAGATACCTATTCCTGCTGGTAATGTGCATGCCATAAATGATGCATTATCAGCAGAGGCTGCGGCAGATGATTACGAGACTTGTCTAAGGCACTTAGTCAAGAGCAAGATACTTGACATCTCTGAAGAGAGTGGGTTTCCAAAATTTGATGTAATGCTATTGGGTATGGGTCCAGACGGACATGTAGCTTCCTTGTTTCCCGGGCATCCTCTTGTCCATGAGAAAGCGAAGTGGGTCACCTTCATCAAGGATTCTCCAAAACCTCCACCGAACAGGATTACATTTACATTCCCTGTAATAAACTCATCTGCAAATATTGCACTTGCTATAGTAGGTGCTGGTAAGGCAGATGTAGTGCATAAATCGCTAGGTGATGATAAAAGTTCTGATTTGCTG</genome_strand>
        <mrna_strand>TGACAGCAATTATTTGCTTGCTTATAATGGTTTTCTATCCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCTATTCCGGCTGGTCATGTGTATGCCATAAATGATGCATTATCAGCAGAGGCTGCGGCAGATGATTACGAGACTTGTCTAAGGCACTTAGTTAAGAGCAAGATTGTAGACATCTCTAAAGAGAGTGGATTTCCAAAATTTGATGTAATGCTTTTGGGTATGGGTCCAGACGGACATATAGCTTCCTTGTTTCCGGGGCATCCTCTTGTCCATGAGAAAGAAAAGTGGGTCACCTTCATCAAGGACTCTCCAAAACCTCCACCGAACAGAATTACATTTACATTCCCTGTAATAAACTCATCTGCAAATATTGCACTTGCTATAGTAGGTGCTGGGAAGGCAGATGTAGTGCAGAAATCACTAGGCGATGATAAAAGTTCTGATCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E232078" ref_strand="+" ref_description="SGN-E232078 [cLED-7-L3]">
      <seq>tgacagcaattatttgcttgcttataatggttttctatccaagatacctattccggctggtcatgtgtatgccataaatgatgcattatcagcagaggctgcggcagatgattacgagacttgtctaaggcacttagttaagagcaagattgtagacatctctaaagagagtggatttccaaaatttgatgtaatgcttttgggtatgggtccagacggacatatagcttccttgtttccggggcatcctcttgtccatgagaaagaaaagtgggtcaccttcatcaaggactctccaaaacctccaccgaacagaattacatttacattccctgtaataaactcatctgcaaatattgcacttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="83321" stop="85955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83621" g_stop="83663" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83664" i_stop="85331" i_length="1668">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85332" g_stop="85655" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="367" r_length="324" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E232078" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83621" e_stop="83663"/>
          <exon e_start="85332" e_stop="85655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACAGCAATTATTTGCTTGCTTATGATGGTTTTCTATCCAAGGTATATTTGCAGCCCTTCCTACAACATATTGATTTTATTTACTGCTGCCACAGTGTGTACTGTGTAGTTTCTTCATTAGCTTTCTACCCATTATATTTCACCTCTCCTCTGTGTATTTGTTGTTTTACCCCAACTTTTCTGATCTTTTGCTTGTTTGCCCAGTCAAAATGTGGGACGCAGTAGGTTTCTTGTACTAGTGATTTCTTCTCATCTGTTCAGTTAGATACCCCAAAGTACTAGTAGACATGCCCAGACAGCAGGTTATAAAAAAAAGTTAATCTTTTAAGTTTATCTTTTTTTTCTAGTTACGAGCAATGCTGATGGTCTCAATCTCCTTAACAAATAAGTTATAGGGGGTGGGGGGATGTGAACAGAGATTAAAGTGCACAGTATTGATGGAGAATACATCTAGAGGTATTCAGATTCTCATTCAACTCTGGATGAAATATTTGGGAAAATCAATTGAGAAAGTAATTATGTGAGGGCGTTAGGGCAGCGGTAACAAGGAATGCAAGTCATGCATACTATAAACATATCTTTTTCCGCAGTCCTTGAGATTAAGAAGTTAAGTAAGATAAGCCTGCTAATATATGGACGGAAGAAACAATCTCTACCTATATATATATATACATATTTGGGGGTGGTTTGGTTATATGTGACAAAGTCAAGCAATCTGTTTACATGATCATATCTATCATGGACCCAACTGTGCGAAGAAGCTGTATGTTAAATAAGTTTTAGATTACATTTTCTTAAGATATGTGATGATGTTACGCAATTCATGTAAAAACAAGAAACTAAAAAGAAAATCTTTGCACTGTATTGGAATAAACAGCTTCAAATTCACTTTTTTTTTTAGAAAACATTAAATTTTGCTTTGGTTAACAAAATTCTGATATAAAATTACTTCTTATAGAATCTGTCAGCCCCTGAAGCCCTCCTTAAACAACAACTGAGGTCCTTCTATTATTTTGTGTGTGTGGGGGGGGGGGGGGGGGTTATATTAAAATGATGGAGCATTAGCAAAATACTTCAAACATTTACCATGGTAGAGATTACTTAATGAGAAAGGATTTGGAAATTTTTGGGGCTAGAAGAGTTAAGCGGGGTTGAGGTTTAGAGGATCAACTGAAAAGTAATTATAACTTAAGCACAATTGTCAATTGAGCATGTTGGGAAACTTAAAGAGCAAAGAGTGTCCAACTCAATACCATGTGGAGCTGCCGATAAGATCAGTTGGACATTTTATGTTGACTTCGGTGAATTCCTTTTAATATAAGGATGAATAAGTGGGTTTGAATTACACCCTCAATGTTAACCTACTTACTTTCAGTTAAGTCTCTTCATTATCTCTAACAAGTTGGGTTGCCTTTACTTCTTGATTCTTACTTGGCAGTCTGACCAGCTCTTAAGCACAGACTATTTAAATAAAGATGGTTGTGAACTAAATTTATCCAATTTGTATCAGAAAAGATGTTTAGTGATGCATAGCTGCAAGGGCATCTTTTTGGATTTCAAATTGCTCATAGTACTGGCTTCACATGTGAACTGCCTACATTGTTTGATCTTATTATGAATGATGATAATTCTTACTTCATCATTATTCTCAGTTGACATCTTTAATTCTTTCTACCAAACTTCTAACCTCATCTTTACTTCTCTTGGCAGATACCTATTCCTGCTGGTAATGTGCATGCCATAAATGATGCATTATCAGCAGAGGCTGCGGCAGATGATTACGAGACTTGTCTAAGGCACTTAGTCAAGAGCAAGATACTTGACATCTCTGAAGAGAGTGGGTTTCCAAAATTTGATGTAATGCTATTGGGTATGGGTCCAGACGGACATGTAGCTTCCTTGTTTCCCGGGCATCCTCTTGTCCATGAGAAAGCGAAGTGGGTCACCTTCATCAAGGATTCTCCAAAACCTCCACCGAACAGGATTACATTTACATTCCCTGTAATAAACTCATCTGCAAATATTGCACTTGCT</genome_strand>
        <mrna_strand>TGACAGCAATTATTTGCTTGCTTATAATGGTTTTCTATCCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCTATTCCGGCTGGTCATGTGTATGCCATAAATGATGCATTATCAGCAGAGGCTGCGGCAGATGATTACGAGACTTGTCTAAGGCACTTAGTTAAGAGCAAGATTGTAGACATCTCTAAAGAGAGTGGATTTCCAAAATTTGATGTAATGCTTTTGGGTATGGGTCCAGACGGACATATAGCTTCCTTGTTTCCGGGGCATCCTCTTGTCCATGAGAAAGAAAAGTGGGTCACCTTCATCAAGGACTCTCCAAAACCTCCACCGAACAGAATTACATTTACATTCCCTGTAATAAACTCATCTGCAAATATTGCACTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240922" ref_strand="+" ref_description="SGN-E240922 [cLED-24-O23]">
      <seq>tgacagcaattatttgcttgcttataatggttttctatccaagatacctattccggctggtcatgtgtatgccataaatgatgcattatcagcagaggctgcggcagatgattacgagacttgtctaaggcacttagttaagagcaagattgtagacatctctaaagagagtggatttccaaaatttgatgtaatgcttttgggtatgggtccagacggacatatagcttccttgtttccggggcatcctcttgtccatgagaaagaaaagtgggtcaccttcatcaaggactctccaaaacctccaccgaacagaattacatttacattccctgtaataaactcatctgcaaatattgcactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="83321" stop="85952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83621" g_stop="83663" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83664" i_stop="85331" i_length="1668">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85332" g_stop="85652" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="364" r_length="321" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E240922" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83621" e_stop="83663"/>
          <exon e_start="85332" e_stop="85652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACAGCAATTATTTGCTTGCTTATGATGGTTTTCTATCCAAGGTATATTTGCAGCCCTTCCTACAACATATTGATTTTATTTACTGCTGCCACAGTGTGTACTGTGTAGTTTCTTCATTAGCTTTCTACCCATTATATTTCACCTCTCCTCTGTGTATTTGTTGTTTTACCCCAACTTTTCTGATCTTTTGCTTGTTTGCCCAGTCAAAATGTGGGACGCAGTAGGTTTCTTGTACTAGTGATTTCTTCTCATCTGTTCAGTTAGATACCCCAAAGTACTAGTAGACATGCCCAGACAGCAGGTTATAAAAAAAAGTTAATCTTTTAAGTTTATCTTTTTTTTCTAGTTACGAGCAATGCTGATGGTCTCAATCTCCTTAACAAATAAGTTATAGGGGGTGGGGGGATGTGAACAGAGATTAAAGTGCACAGTATTGATGGAGAATACATCTAGAGGTATTCAGATTCTCATTCAACTCTGGATGAAATATTTGGGAAAATCAATTGAGAAAGTAATTATGTGAGGGCGTTAGGGCAGCGGTAACAAGGAATGCAAGTCATGCATACTATAAACATATCTTTTTCCGCAGTCCTTGAGATTAAGAAGTTAAGTAAGATAAGCCTGCTAATATATGGACGGAAGAAACAATCTCTACCTATATATATATATACATATTTGGGGGTGGTTTGGTTATATGTGACAAAGTCAAGCAATCTGTTTACATGATCATATCTATCATGGACCCAACTGTGCGAAGAAGCTGTATGTTAAATAAGTTTTAGATTACATTTTCTTAAGATATGTGATGATGTTACGCAATTCATGTAAAAACAAGAAACTAAAAAGAAAATCTTTGCACTGTATTGGAATAAACAGCTTCAAATTCACTTTTTTTTTTAGAAAACATTAAATTTTGCTTTGGTTAACAAAATTCTGATATAAAATTACTTCTTATAGAATCTGTCAGCCCCTGAAGCCCTCCTTAAACAACAACTGAGGTCCTTCTATTATTTTGTGTGTGTGGGGGGGGGGGGGGGGGTTATATTAAAATGATGGAGCATTAGCAAAATACTTCAAACATTTACCATGGTAGAGATTACTTAATGAGAAAGGATTTGGAAATTTTTGGGGCTAGAAGAGTTAAGCGGGGTTGAGGTTTAGAGGATCAACTGAAAAGTAATTATAACTTAAGCACAATTGTCAATTGAGCATGTTGGGAAACTTAAAGAGCAAAGAGTGTCCAACTCAATACCATGTGGAGCTGCCGATAAGATCAGTTGGACATTTTATGTTGACTTCGGTGAATTCCTTTTAATATAAGGATGAATAAGTGGGTTTGAATTACACCCTCAATGTTAACCTACTTACTTTCAGTTAAGTCTCTTCATTATCTCTAACAAGTTGGGTTGCCTTTACTTCTTGATTCTTACTTGGCAGTCTGACCAGCTCTTAAGCACAGACTATTTAAATAAAGATGGTTGTGAACTAAATTTATCCAATTTGTATCAGAAAAGATGTTTAGTGATGCATAGCTGCAAGGGCATCTTTTTGGATTTCAAATTGCTCATAGTACTGGCTTCACATGTGAACTGCCTACATTGTTTGATCTTATTATGAATGATGATAATTCTTACTTCATCATTATTCTCAGTTGACATCTTTAATTCTTTCTACCAAACTTCTAACCTCATCTTTACTTCTCTTGGCAGATACCTATTCCTGCTGGTAATGTGCATGCCATAAATGATGCATTATCAGCAGAGGCTGCGGCAGATGATTACGAGACTTGTCTAAGGCACTTAGTCAAGAGCAAGATACTTGACATCTCTGAAGAGAGTGGGTTTCCAAAATTTGATGTAATGCTATTGGGTATGGGTCCAGACGGACATGTAGCTTCCTTGTTTCCCGGGCATCCTCTTGTCCATGAGAAAGCGAAGTGGGTCACCTTCATCAAGGATTCTCCAAAACCTCCACCGAACAGGATTACATTTACATTCCCTGTAATAAACTCATCTGCAAATATTGCACTT</genome_strand>
        <mrna_strand>TGACAGCAATTATTTGCTTGCTTATAATGGTTTTCTATCCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCTATTCCGGCTGGTCATGTGTATGCCATAAATGATGCATTATCAGCAGAGGCTGCGGCAGATGATTACGAGACTTGTCTAAGGCACTTAGTTAAGAGCAAGATTGTAGACATCTCTAAAGAGAGTGGATTTCCAAAATTTGATGTAATGCTTTTGGGTATGGGTCCAGACGGACATATAGCTTCCTTGTTTCCGGGGCATCCTCTTGTCCATGAGAAAGAAAAGTGGGTCACCTTCATCAAGGACTCTCCAAAACCTCCACCGAACAGAATTACATTTACATTCCCTGTAATAAACTCATCTGCAAATATTGCACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236511" ref_strand="+" ref_description="SGN-E236511 [cLED-13-C23]">
      <seq>tgacagcaattatttgcttgcttataatggttttctatccaagatacctattccggctggtcatgtgtatgccataaatgatgcattatcagcagaggctgcggcagatgattacgagacttgtctaaggcacttagttaagagcaagattgtagacatctctaaagagagtggatttccaaaatttgatgtaatgcttttgggtatgggtccagacggacatatagcttccttgtttccggggcatcctcttgtccatgagaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="83321" stop="85854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83621" g_stop="83663" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83664" i_stop="85331" i_length="1668">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85332" g_stop="85557" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="269" r_length="226" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E236511" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>269</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83621" e_stop="83663"/>
          <exon e_start="85332" e_stop="85557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACAGCAATTATTTGCTTGCTTATGATGGTTTTCTATCCAAGGTATATTTGCAGCCCTTCCTACAACATATTGATTTTATTTACTGCTGCCACAGTGTGTACTGTGTAGTTTCTTCATTAGCTTTCTACCCATTATATTTCACCTCTCCTCTGTGTATTTGTTGTTTTACCCCAACTTTTCTGATCTTTTGCTTGTTTGCCCAGTCAAAATGTGGGACGCAGTAGGTTTCTTGTACTAGTGATTTCTTCTCATCTGTTCAGTTAGATACCCCAAAGTACTAGTAGACATGCCCAGACAGCAGGTTATAAAAAAAAGTTAATCTTTTAAGTTTATCTTTTTTTTCTAGTTACGAGCAATGCTGATGGTCTCAATCTCCTTAACAAATAAGTTATAGGGGGTGGGGGGATGTGAACAGAGATTAAAGTGCACAGTATTGATGGAGAATACATCTAGAGGTATTCAGATTCTCATTCAACTCTGGATGAAATATTTGGGAAAATCAATTGAGAAAGTAATTATGTGAGGGCGTTAGGGCAGCGGTAACAAGGAATGCAAGTCATGCATACTATAAACATATCTTTTTCCGCAGTCCTTGAGATTAAGAAGTTAAGTAAGATAAGCCTGCTAATATATGGACGGAAGAAACAATCTCTACCTATATATATATATACATATTTGGGGGTGGTTTGGTTATATGTGACAAAGTCAAGCAATCTGTTTACATGATCATATCTATCATGGACCCAACTGTGCGAAGAAGCTGTATGTTAAATAAGTTTTAGATTACATTTTCTTAAGATATGTGATGATGTTACGCAATTCATGTAAAAACAAGAAACTAAAAAGAAAATCTTTGCACTGTATTGGAATAAACAGCTTCAAATTCACTTTTTTTTTTAGAAAACATTAAATTTTGCTTTGGTTAACAAAATTCTGATATAAAATTACTTCTTATAGAATCTGTCAGCCCCTGAAGCCCTCCTTAAACAACAACTGAGGTCCTTCTATTATTTTGTGTGTGTGGGGGGGGGGGGGGGGGTTATATTAAAATGATGGAGCATTAGCAAAATACTTCAAACATTTACCATGGTAGAGATTACTTAATGAGAAAGGATTTGGAAATTTTTGGGGCTAGAAGAGTTAAGCGGGGTTGAGGTTTAGAGGATCAACTGAAAAGTAATTATAACTTAAGCACAATTGTCAATTGAGCATGTTGGGAAACTTAAAGAGCAAAGAGTGTCCAACTCAATACCATGTGGAGCTGCCGATAAGATCAGTTGGACATTTTATGTTGACTTCGGTGAATTCCTTTTAATATAAGGATGAATAAGTGGGTTTGAATTACACCCTCAATGTTAACCTACTTACTTTCAGTTAAGTCTCTTCATTATCTCTAACAAGTTGGGTTGCCTTTACTTCTTGATTCTTACTTGGCAGTCTGACCAGCTCTTAAGCACAGACTATTTAAATAAAGATGGTTGTGAACTAAATTTATCCAATTTGTATCAGAAAAGATGTTTAGTGATGCATAGCTGCAAGGGCATCTTTTTGGATTTCAAATTGCTCATAGTACTGGCTTCACATGTGAACTGCCTACATTGTTTGATCTTATTATGAATGATGATAATTCTTACTTCATCATTATTCTCAGTTGACATCTTTAATTCTTTCTACCAAACTTCTAACCTCATCTTTACTTCTCTTGGCAGATACCTATTCCTGCTGGTAATGTGCATGCCATAAATGATGCATTATCAGCAGAGGCTGCGGCAGATGATTACGAGACTTGTCTAAGGCACTTAGTCAAGAGCAAGATACTTGACATCTCTGAAGAGAGTGGGTTTCCAAAATTTGATGTAATGCTATTGGGTATGGGTCCAGACGGACATGTAGCTTCCTTGTTTCCCGGGCATCCTCTTGTCCATGAGAAAGCGA</genome_strand>
        <mrna_strand>TGACAGCAATTATTTGCTTGCTTATAATGGTTTTCTATCCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCTATTCCGGCTGGTCATGTGTATGCCATAAATGATGCATTATCAGCAGAGGCTGCGGCAGATGATTACGAGACTTGTCTAAGGCACTTAGTTAAGAGCAAGATTGTAGACATCTCTAAAGAGAGTGGATTTCCAAAATTTGATGTAATGCTTTTGGGTATGGGTCCAGACGGACATATAGCTTCCTTGTTTCCGGGGCATCCTCTTGTCCATGAGAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240023" ref_strand="+" ref_description="SGN-E240023 [cLED-29-P16]">
      <seq>tgacagcaattatttgcttgcttataatggttttctatccaagatacctattccggctggtcatgtgtatgccataaatgatgcattatcagcagaggctgcggcagatgattacgagacttgtctaaggcacttagttaagagcaagattgtagacatctctaaagagagtggatttccaaaatttgatgtaatgcttttgggtatgggtccagacggacatatagcttcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="83321" stop="85822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83621" g_stop="83663" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83664" i_stop="85331" i_length="1668">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85332" g_stop="85522" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="234" r_length="191" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E240023" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>234</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83621" e_stop="83663"/>
          <exon e_start="85332" e_stop="85522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACAGCAATTATTTGCTTGCTTATGATGGTTTTCTATCCAAGGTATATTTGCAGCCCTTCCTACAACATATTGATTTTATTTACTGCTGCCACAGTGTGTACTGTGTAGTTTCTTCATTAGCTTTCTACCCATTATATTTCACCTCTCCTCTGTGTATTTGTTGTTTTACCCCAACTTTTCTGATCTTTTGCTTGTTTGCCCAGTCAAAATGTGGGACGCAGTAGGTTTCTTGTACTAGTGATTTCTTCTCATCTGTTCAGTTAGATACCCCAAAGTACTAGTAGACATGCCCAGACAGCAGGTTATAAAAAAAAGTTAATCTTTTAAGTTTATCTTTTTTTTCTAGTTACGAGCAATGCTGATGGTCTCAATCTCCTTAACAAATAAGTTATAGGGGGTGGGGGGATGTGAACAGAGATTAAAGTGCACAGTATTGATGGAGAATACATCTAGAGGTATTCAGATTCTCATTCAACTCTGGATGAAATATTTGGGAAAATCAATTGAGAAAGTAATTATGTGAGGGCGTTAGGGCAGCGGTAACAAGGAATGCAAGTCATGCATACTATAAACATATCTTTTTCCGCAGTCCTTGAGATTAAGAAGTTAAGTAAGATAAGCCTGCTAATATATGGACGGAAGAAACAATCTCTACCTATATATATATATACATATTTGGGGGTGGTTTGGTTATATGTGACAAAGTCAAGCAATCTGTTTACATGATCATATCTATCATGGACCCAACTGTGCGAAGAAGCTGTATGTTAAATAAGTTTTAGATTACATTTTCTTAAGATATGTGATGATGTTACGCAATTCATGTAAAAACAAGAAACTAAAAAGAAAATCTTTGCACTGTATTGGAATAAACAGCTTCAAATTCACTTTTTTTTTTAGAAAACATTAAATTTTGCTTTGGTTAACAAAATTCTGATATAAAATTACTTCTTATAGAATCTGTCAGCCCCTGAAGCCCTCCTTAAACAACAACTGAGGTCCTTCTATTATTTTGTGTGTGTGGGGGGGGGGGGGGGGGTTATATTAAAATGATGGAGCATTAGCAAAATACTTCAAACATTTACCATGGTAGAGATTACTTAATGAGAAAGGATTTGGAAATTTTTGGGGCTAGAAGAGTTAAGCGGGGTTGAGGTTTAGAGGATCAACTGAAAAGTAATTATAACTTAAGCACAATTGTCAATTGAGCATGTTGGGAAACTTAAAGAGCAAAGAGTGTCCAACTCAATACCATGTGGAGCTGCCGATAAGATCAGTTGGACATTTTATGTTGACTTCGGTGAATTCCTTTTAATATAAGGATGAATAAGTGGGTTTGAATTACACCCTCAATGTTAACCTACTTACTTTCAGTTAAGTCTCTTCATTATCTCTAACAAGTTGGGTTGCCTTTACTTCTTGATTCTTACTTGGCAGTCTGACCAGCTCTTAAGCACAGACTATTTAAATAAAGATGGTTGTGAACTAAATTTATCCAATTTGTATCAGAAAAGATGTTTAGTGATGCATAGCTGCAAGGGCATCTTTTTGGATTTCAAATTGCTCATAGTACTGGCTTCACATGTGAACTGCCTACATTGTTTGATCTTATTATGAATGATGATAATTCTTACTTCATCATTATTCTCAGTTGACATCTTTAATTCTTTCTACCAAACTTCTAACCTCATCTTTACTTCTCTTGGCAGATACCTATTCCTGCTGGTAATGTGCATGCCATAAATGATGCATTATCAGCAGAGGCTGCGGCAGATGATTACGAGACTTGTCTAAGGCACTTAGTCAAGAGCAAGATACTTGACATCTCTGAAGAGAGTGGGTTTCCAAAATTTGATGTAATGCTATTGGGTATGGGTCCAGACGGACATGTAGCTTCCTT</genome_strand>
        <mrna_strand>TGACAGCAATTATTTGCTTGCTTATAATGGTTTTCTATCCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCTATTCCGGCTGGTCATGTGTATGCCATAAATGATGCATTATCAGCAGAGGCTGCGGCAGATGATTACGAGACTTGTCTAAGGCACTTAGTTAAGAGCAAGATTGTAGACATCTCTAAAGAGAGTGGATTTCCAAAATTTGATGTAATGCTTTTGGGTATGGGTCCAGACGGACATATAGCTTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303737" ref_strand="-" ref_description="SGN-E303737 [cLEX-4-G17]">
      <seq>gtttccaaaatttgatgtaatgctattgggtatgggtccagacggacatgtagcttccttgtttcccgggcatcctcttgtccatgagaaagcgaagtgggtcaccttcatcaaggattctccaaaacctccaccgaacaggattacatttacattccctgtaataaactcatctgcaaatattgcacttgctatagtaggtgctggtaaggcagatgtagtgcataaatcgctaggtgatgataaaagttctgatttgctgcctgtgcagatggtttcacctgaaggagaattagtttggtttttagacaaggatgcagcttcgaagctgtaaggatgaggatatgtgagctgcgtatttgtgcttcactcctctgtgtattttattattctaataatacattctgaagaagggttgtctgtaaaatgttatgccatttttttctcacttgtttctgtaaggatccttgactatgaggaacttggtactaaaactacagtttattctcctattactatattttatctatacaagttaggcatgtgtacagattgtttgcttcagcaataacacaagtgacagctaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="85163" stop="86356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85463" g_stop="86047" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="585" r_length="585" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="586" polyA_stop="606"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E303737" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303737" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="85463" e_stop="86047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCAAAATTTGATGTAATGCTATTGGGTATGGGTCCAGACGGACATGTAGCTTCCTTGTTTCCCGGGCATCCTCTTGTCCATGAGAAAGCGAAGTGGGTCACCTTCATCAAGGATTCTCCAAAACCTCCACCGAACAGGATTACATTTACATTCCCTGTAATAAACTCATCTGCAAATATTGCACTTGCTATAGTAGGTGCTGGTAAGGCAGATGTAGTGCATAAATCGCTAGGTGATGATAAAAGTTCTGATTTGCTGCCTGTGCAGATGGTTTCACCTGAAGGAGAATTAGTTTGGTTTTTAGACAAGGATGCAGCTTCGAAGCTGTAAGGATGAGGATATGTGAGCTGCGTATTTGTGCTTCACTCCTCTGTGTATTTTATTATTCTAATAATACATTCTGAAGAAGGGTTGTCTGTAAAATGTTATGCCATTTTTTTCTCACTTGTTTCTGTAAGGATCCTTGACTATGAGGAACTTGGTACTAAAACTACAGTTTATTCTCCTATTACTATATTTTATCTATACAAGTTAGGCATGTGTACAGATTGTTTGCTTCAGCAATAACACAAGTGACAGCT</genome_strand>
        <mrna_strand>GTTTCCAAAATTTGATGTAATGCTATTGGGTATGGGTCCAGACGGACATGTAGCTTCCTTGTTTCCCGGGCATCCTCTTGTCCATGAGAAAGCGAAGTGGGTCACCTTCATCAAGGATTCTCCAAAACCTCCACCGAACAGGATTACATTTACATTCCCTGTAATAAACTCATCTGCAAATATTGCACTTGCTATAGTAGGTGCTGGTAAGGCAGATGTAGTGCATAAATCGCTAGGTGATGATAAAAGTTCTGATTTGCTGCCTGTGCAGATGGTTTCACCTGAAGGAGAATTAGTTTGGTTTTTAGACAAGGATGCAGCTTCGAAGCTGTAAGGATGAGGATATGTGAGCTGCGTATTTGTGCTTCACTCCTCTGTGTATTTTATTATTCTAATAATACATTCTGAAGAAGGGTTGTCTGTAAAATGTTATGCCATTTTTTTCTCACTTGTTTCTGTAAGGATCCTTGACTATGAGGAACTTGGTACTAAAACTACAGTTTATTCTCCTATTACTATATTTTATCTATACAAGTTAGGCATGTGTACAGATTGTTTGCTTCAGCAATAACACAAGTGACAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295927" ref_strand="+" ref_description="SGN-E295927 [cLET-27-F19]">
      <seq>gggtatgggtccagacggacatatagcttactgtttccggggcatcctctttccatgagaaagaaaagtgggtcaccttctcaaggactctccaaacctccaccgaacagaattacatttacattccctgtaataaactcatctgcaaatattgcacttgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="85190" stop="85956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85490" g_stop="85656" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E295927" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>167</cumulative_length_of_scored_exons>
        <coverage percentage="1.025" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85490" e_stop="85656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTATGGGTCCAGACGGACATGTAGCTTCCTTGTTTCCCGGGCATCCTCTTGTCCATGAGAAAGCGAAGTGGGTCACCTTCATCAAGGATTCTCCAAAACCTCCACCGAACAGGATTACATTTACATTCCCTGTAATAAACTCATCTGCAAATATTGCACTTGCTA</genome_strand>
        <mrna_strand>GGGTATGGGTCCAGACGGACATATAGCTTAC-TGTTTCCGGGGCATCCTCTT-TCCATGAGAAAGAAAAGTGGGTCACCTTC-TCAAGGACTCTCCAAA-CCTCCACCGAACAGAATTACATTTACATTCCCTGTAATAAACTCATCTGCAAATATTGCACTTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206520" ref_strand="+" ref_description="SGN-E206520 [cLEC-23-B24]">
      <seq>tttcttttattatatctgaatgaatctctctatcactttctgccattatttttgcttgtaatctttagggttttcagcttcaatcttttggatccagcaatttgcttgtttcaatttctctttgtttcagtattgaattcttcgagtgttgtttcatttcttagtaatttcattttttttcttctttgagttgaatctcagtgaattcttgcaggagacatatttgtttaattattctgaggtgtttgataaatttcctcagagagagaacgcagatttttaagggggaatgggaatttgttactcttcaagtaaaagcacgagcgatgatgggttgtgggatggtaagaatgacagcagaaggtttgattacaagttgaagaagaacagttatagtggcgatttcagctcatttttaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="87978" stop="88998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88278" g_stop="88698" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E206520" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88278" e_stop="88698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTTATTATATCTGAATGAATCTCTCTATCACTTTCTGCCATTATTTTTGCTTGTAATCTTTAGGGTTTTCAGCTTCAATCTTTTGGATCCAGCAATTTGCTTGTTTCAATTTCTCTTTGTTTCAGTATTGAATTCTTCGAGTGTTGTTTCATTTCTTAGTAATTTCATTTTTTTTCTTCTTTGAGTTGAATCTCAGTGAATTCTTGCAGGAGACATATTTGTTTAATTATTCTGAGGTGTTTGATAAATTTCCTCAGAGAGAGAACGCAGATTTTTAAGGGGGAATGGGAATTTGTTACTCTTCAAGTAAAAGCAAGAGCGATGATGGGTTGTGGGATGGTAAGAATGACAGCAGAAGGTTTGATTACAAGTTGAAGAAGAACAGTTATAGTGGCGATTTCAGCTCATTTTTAAGC</genome_strand>
        <mrna_strand>TTTCTTTTATTATATCTGAATGAATCTCTCTATCACTTTCTGCCATTATTTTTGCTTGTAATCTTTAGGGTTTTCAGCTTCAATCTTTTGGATCCAGCAATTTGCTTGTTTCAATTTCTCTTTGTTTCAGTATTGAATTCTTCGAGTGTTGTTTCATTTCTTAGTAATTTCATTTTTTTTCTTCTTTGAGTTGAATCTCAGTGAATTCTTGCAGGAGACATATTTGTTTAATTATTCTGAGGTGTTTGATAAATTTCCTCAGAGAGAGAACGCAGATTTTTAAGGGGGAATGGGAATTTGTTACTCTTCAAGTAAAAGCACGAGCGATGATGGGTTGTGGGATGGTAAGAATGACAGCAGAAGGTTTGATTACAAGTTGAAGAAGAACAGTTATAGTGGCGATTTCAGCTCATTTTTAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258545" ref_strand="+" ref_description="SGN-E258545 [cLEG-47-D19]">
      <seq>tgggatggtaagaatgacagcagaaggtttgattacaagttgaagaagaacagttatagtggcgatttcagctcatttttaagcaagttaagtggtgttggtggaggagggggtgaggacaaggggctgcatcatattcccggaaggattttggggaatggagccacctcccgtgcttgcctacacactcagcaagggaaaaaaggaacgaatcaagatgccatgatcatttgggagaatttttgctcgcgaagtgatacgatcttttgcggagtatttgatggacacggtccctatggccatatggtggcaaggaaagttcgagatactcttccgtttctcctgtgttcagagtggcaagttaaatccggtggtgatcaaagtaatacttctgagacaggaaataccaacggaggttcgcatcattgatgatgacttggatgatgatttgattgaagctatggaagctgagaacaatgaaaagttcccagaaatacatcttccccttaaaagatcaatgttaaaagctttccggtcgatggataaagaactcaagttgcacccttctattgattgtttctgtaatggatcaactgctgtttccttggtgatgcagggccaggatataattgctggcaatgttggtgactcaagagcagtattggcaactagagataaagacaactatttaatggctgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="88315" stop="91329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88615" g_stop="88851" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88852" i_stop="89755" i_length="904">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89756" g_stop="90133" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="616" r_length="379" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90134" i_stop="90945" i_length="812">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90946" g_stop="91029" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="700" r_length="84" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E258545" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88615" e_stop="88851"/>
          <exon e_start="89756" e_stop="90133"/>
          <exon e_start="90946" e_stop="91029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGATGGTAAGAATGACAGCAGAAGGTTTGATTACAAGTTGAAGAAGAACAGTTATAGTGGCGATTTCAGCTCATTTTTAAGCAAGTTAAGTGGTGTTGGTGGAGGAGGGGGTGAGGACAAGGGGCTGCATCATATTCCCGGAAGGATTTTGGGGAATGGAGCCACCTCCCGTGCTTGCCTACACACTCAGCAAGGGAAAAAAGGAACGAATCAAGATGCCATGATCATTTGGGAGGTCCTCAATTCTCTGTTTCTTCAATTATTTTTTTGTGTTTTTCTGCTTATGTCACGAGCTACCAAATCATCAATCTTTTTGTGCGTATGGGAGCTTAAATTTCTAAAAATTGAACCTTCTCATTATCTGTGAATAGCTGGTTCCATGAAGAGGGTTGTCGATAGGTTGATGGCGGGTCTGCAATGAATCATCTCAATCTTGTGTTTTCTCTGCGTTGAATGCCTCTATGTTGTATAAGTAACCAAATCCTCAATTATTTTGTGCTTATATAGGAGCTTAGATATCTAAAAATTGAACCTTTTAATTATCTATCACATAGGCGGTTCCAAGGCCCGACAAAAGAGGGGGGTTGTAGTGGATTGATGTCCTGTGTGCAAGTTGGATTATGAATCATCCGAATTTTGTGTTTTCTTCCTTTTGGTTTTCTTTGCATTGAATGTCTCTTATGTCAAATGAGTAACCAAATCCTCAATCATTTTGTGCATGTAGGAGCATTGATATCTAAAAATTGAACCTTTTAATTCTCTATCACATAGCCAGTTCTGCGGACTGGTAAATGAGGAGGGTTTGTGGTAGGTTGATGGCCGGTATAAGTTTAGTTATTAATCATGTAAGGTTTGAGTGTGTAGAATGATGTCTACTTATGCATAGAAGTCATATATATGATCCTTTCAACCATCAATTATGGTAGATGGACTGTCAAAATAACCTACGTAGCTCTTGTTTCTGAAGCTTCCTTCACCCAATTAACTATTCCAGTTTTGCATCAAAATTTTTGAGTCCTATGGAAGTGTAGTTATTGTATACTTAAATTTCATTAAGTCCATTACTTGTCAAAACAAAGAGTTAATTTGTTCTTATCTATTGGGTCAGTTTATGACTTGGTTGGAATTTTCTACAATAGAATTTTTGCTCGCGAAGTGATACGATCTTTTGCGGAGTATTTGATGGACACGGTCCCTATGGCCATATGGTGGCAAGGAAAGTTCGAGATACTCTTCCGTTTCTCCTGTGTTCAGAGTGGCAAGTTAAATCCGGTGGTGATCAAAGTAATACTTCTGAGACAGGAAATACCAACGGAGGTTCACATC-TTGATGATGTCTTGGATGATGATTTGATTGAAGCTATGGAAGCTGAGAACAATGAAAAGTTCCCAGAAATACATCTTCCCCTTAAAAGATCAATGTTAAAAGCTTTCCGGTCGATGGATAAAGAACTCAAGTTGCACCCTTCTATTGATTGTTTCTGTAGTGGATCAACTGCTGTTTCCTTGGTGATGCAGGTAATAATTTAGCTAATTTTTTTTTGTATAAACGAGGTTTATTTTCCTAAATCCTAATGTTTCAGAAAAAAAAAATTTGGGTACTTACTGATAATTTTTTTTTAATTAATATTTGGGTGCTTATAAATGGGTAATACTGTAATTATAGTAGCAAATTAGTGAGCTACTTTTTCTTATAGCCAATAAGTTCCCAAGGACCAGTGATGCAGGGTCCGAGTACATGACATGCGCCTAACACAAAACATCACACGCCACATGCTTACCCCTAGATCAAATCCCCGGAGGCAATAAATGAGCTATTTTTGAATTGCCAGTCATTGGCTAGTCATTGTCTTTGCTTTTGAAGGATTATCACTTTTGATGTCCTTGACTACTACATGGGTTACATCAAACATGAAAACCTGATACAGTTCATTTATGTATTGTATAAAATCCATTCAAATAATAAAATTTTGTGCATCCGAGTTCTCTACTGACTGCCCTCTCAATCTACTGGATGTTTTGTAATAAATTTGTCTTCTTCTGGTAGTTAACTCAATTTAGCAAGTTATCTTCTTGTTCTAAAATATTTTATTTAATAGTTAGACTTAAAACAGTTCCCTTAGTACTTCTCACTTGACTGGTACATGATCTTGAAGCATACTAGTTGACTTACCAAAAAAAAGGGAAAGAAACATACTAGTTGTAGAAAATAATCAAGTCTGAGTGGGAGGGGTTTAATATGAGTCTGCCACATATTTGGTTATTCTAGCTCTTTTATAATTTCTTAGCATTCCACAAGCATTTTAACTGATCTTTTTGTGGTGTCTCAGGGCCAGGATATAATTGTTGGCAATGTTGGTGACTCAAGAGCAGTATTGGCAACTAGAGATAAAGACAACTATTTAATGGCTGTA</genome_strand>
        <mrna_strand>TGGGATGGTAAGAATGACAGCAGAAGGTTTGATTACAAGTTGAAGAAGAACAGTTATAGTGGCGATTTCAGCTCATTTTTAAGCAAGTTAAGTGGTGTTGGTGGAGGAGGGGGTGAGGACAAGGGGCTGCATCATATTCCCGGAAGGATTTTGGGGAATGGAGCCACCTCCCGTGCTTGCCTACACACTCAGCAAGGGAAAAAAGGAACGAATCAAGATGCCATGATCATTTGGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTTTGCTCGCGAAGTGATACGATCTTTTGCGGAGTATTTGATGGACACGGTCCCTATGGCCATATGGTGGCAAGGAAAGTTCGAGATACTCTTCCGTTTCTCCTGTGTTCAGAGTGGCAAGTTAAATCCGGTGGTGATCAAAGTAATACTTCTGAGACAGGAAATACCAACGGAGGTTCGCATCATTGATGATGACTTGGATGATGATTTGATTGAAGCTATGGAAGCTGAGAACAATGAAAAGTTCCCAGAAATACATCTTCCCCTTAAAAGATCAATGTTAAAAGCTTTCCGGTCGATGGATAAAGAACTCAAGTTGCACCCTTCTATTGATTGTTTCTGTAATGGATCAACTGCTGTTTCCTTGGTGATGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGGATATAATTGCTGGCAATGTTGGTGACTCAAGAGCAGTATTGGCAACTAGAGATAAAGACAACTATTTAATGGCTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576802" ref_strand="+" ref_description="SGN-E576802 [60077]">
      <seq>aaaaaaggaacgaatcaagatgccatgatcgtttgggagaatttttgctcgcgaagtgatacaatcttttgcggagtatttgatggacacggtccctatggccatatggtggcaaggaaagttcgagatactcttccgtttctcctgtgttcagagtggcaagttaaatccggtggtgatcaaagtaatacttctgagacaggaaataccaacggaggttcacatcttgatgatgtcttggatgatgatttgattgaagctatggaatctgagagcaacgaaaagttcccagaaatgcatcttccccttaaaagatcaatgttaaaagctttccggtcgatggataaagaactcaagttgcaccctactattgattgtttctgtagtggatcaactgctgtttccttggtgatgcagggccaggatataatagttggtaatgttggtgactcaagagcagtattggcaactagagataaagacaactatttaatggctgtacagttgacagtagatttgaagcctaatcttccaagagaagctgctagaatacataaatacaaaggaagggtctttgcattgcaagatgagccagaggttgcacgtgtatggttgccaaacagtgactctcctggcttggcaatgggcagagcatttggtgatattgtcttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="88513" stop="91621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88813" g_stop="88851" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88852" i_stop="89755" i_length="904">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.890" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89756" g_stop="90133" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="417" r_length="378" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90134" i_stop="90945" i_length="812">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90946" g_stop="91063" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="535" r_length="118" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91064" i_stop="91182" i_length="119">
            <donor d_prob="0.067" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91183" g_stop="91321" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="673" r_length="138" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E576802" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E576802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88813" e_stop="88851"/>
          <exon e_start="89756" e_stop="90133"/>
          <exon e_start="90946" e_stop="91063"/>
          <exon e_start="91183" e_stop="91321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGGAACGAATCAAGATGCCATGATCATTTGGGAGGTCCTCAATTCTCTGTTTCTTCAATTATTTTTTTGTGTTTTTCTGCTTATGTCACGAGCTACCAAATCATCAATCTTTTTGTGCGTATGGGAGCTTAAATTTCTAAAAATTGAACCTTCTCATTATCTGTGAATAGCTGGTTCCATGAAGAGGGTTGTCGATAGGTTGATGGCGGGTCTGCAATGAATCATCTCAATCTTGTGTTTTCTCTGCGTTGAATGCCTCTATGTTGTATAAGTAACCAAATCCTCAATTATTTTGTGCTTATATAGGAGCTTAGATATCTAAAAATTGAACCTTTTAATTATCTATCACATAGGCGGTTCCAAGGCCCGACAAAAGAGGGGGGTTGTAGTGGATTGATGTCCTGTGTGCAAGTTGGATTATGAATCATCCGAATTTTGTGTTTTCTTCCTTTTGGTTTTCTTTGCATTGAATGTCTCTTATGTCAAATGAGTAACCAAATCCTCAATCATTTTGTGCATGTAGGAGCATTGATATCTAAAAATTGAACCTTTTAATTCTCTATCACATAGCCAGTTCTGCGGACTGGTAAATGAGGAGGGTTTGTGGTAGGTTGATGGCCGGTATAAGTTTAGTTATTAATCATGTAAGGTTTGAGTGTGTAGAATGATGTCTACTTATGCATAGAAGTCATATATATGATCCTTTCAACCATCAATTATGGTAGATGGACTGTCAAAATAACCTACGTAGCTCTTGTTTCTGAAGCTTCCTTCACCCAATTAACTATTCCAGTTTTGCATCAAAATTTTTGAGTCCTATGGAAGTGTAGTTATTGTATACTTAAATTTCATTAAGTCCATTACTTGTCAAAACAAAGAGTTAATTTGTTCTTATCTATTGGGTCAGTTTATGACTTGGTTGGAATTTTCTACAATAGAATTTTTGCTCGCGAAGTGATACGATCTTTTGCGGAGTATTTGATGGACACGGTCCCTATGGCCATATGGTGGCAAGGAAAGTTCGAGATACTCTTCCGTTTCTCCTGTGTTCAGAGTGGCAAGTTAAATCCGGTGGTGATCAAAGTAATACTTCTGAGACAGGAAATACCAACGGAGGTTCACATCTTGATGATGTCTTGGATGATGATTTGATTGAAGCTATGGAAGCTGAGAACAATGAAAAGTTCCCAGAAATACATCTTCCCCTTAAAAGATCAATGTTAAAAGCTTTCCGGTCGATGGATAAAGAACTCAAGTTGCACCCTTCTATTGATTGTTTCTGTAGTGGATCAACTGCTGTTTCCTTGGTGATGCAGGTAATAATTTAGCTAATTTTTTTTTGTATAAACGAGGTTTATTTTCCTAAATCCTAATGTTTCAGAAAAAAAAAATTTGGGTACTTACTGATAATTTTTTTTTAATTAATATTTGGGTGCTTATAAATGGGTAATACTGTAATTATAGTAGCAAATTAGTGAGCTACTTTTTCTTATAGCCAATAAGTTCCCAAGGACCAGTGATGCAGGGTCCGAGTACATGACATGCGCCTAACACAAAACATCACACGCCACATGCTTACCCCTAGATCAAATCCCCGGAGGCAATAAATGAGCTATTTTTGAATTGCCAGTCATTGGCTAGTCATTGTCTTTGCTTTTGAAGGATTATCACTTTTGATGTCCTTGACTACTACATGGGTTACATCAAACATGAAAACCTGATACAGTTCATTTATGTATTGTATAAAATCCATTCAAATAATAAAATTTTGTGCATCCGAGTTCTCTACTGACTGCCCTCTCAATCTACTGGATGTTTTGTAATAAATTTGTCTTCTTCTGGTAGTTAACTCAATTTAGCAAGTTATCTTCTTGTTCTAAAATATTTTATTTAATAGTTAGACTTAAAACAGTTCCCTTAGTACTTCTCACTTGACTGGTACATGATCTTGAAGCATACTAGTTGACTTACCAAAAAAAAGGGAAAGAAACATACTAGTTGTAGAAAATAATCAAGTCTGAGTGGGAGGGGTTTAATATGAGTCTGCCACATATTTGGTTATTCTAGCTCTTTTATAATTTCTTAGCATTCCACAAGCATTTTAACTGATCTTTTTGTGGTGTCTCAGGGCCAGGATATAATTGTTGGCAATGTTGGTGACTCAAGAGCAGTATTGGCAACTAGAGATAAAGACAACTATTTAATGGCTGTACAGTTGACAGTAGATTTGAAGCCTAATCTTCCAAGTCTCTCTCTCTCTTCTTGATTCTATACATTACACCGAGAAGCTACAATGTAATTGTCTCTTTTTTTTTTTTTTGAAGAAAGTGTTTAAATTTATTTTTTCAATTGTTTTGTCTTGTAGGAGAAGCTGCTAGAATACATAAATACAAAGGCAGGGTTTTTGCATTGCAAGATGAGCCAGAGGTTGCGCGTGTATGGTTGCCGAACAGTGACTCTCCTGGCTTGGCAATGGCCAGAGCATTTGGTGATTTTTGTCTCAA</genome_strand>
        <mrna_strand>AAAAAAGGAACGAATCAAGATGCCATGATCGTTTGGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTTTGCTCGCGAAGTGATACAATCTTTTGCGGAGTATTTGATGGACACGGTCCCTATGGCCATATGGTGGCAAGGAAAGTTCGAGATACTCTTCCGTTTCTCCTGTGTTCAGAGTGGCAAGTTAAATCCGGTGGTGATCAAAGTAATACTTCTGAGACAGGAAATACCAACGGAGGTTCACATCTTGATGATGTCTTGGATGATGATTTGATTGAAGCTATGGAATCTGAGAGCAACGAAAAGTTCCCAGAAATGCATCTTCCCCTTAAAAGATCAATGTTAAAAGCTTTCCGGTCGATGGATAAAGAACTCAAGTTGCACCCTACTATTGATTGTTTCTGTAGTGGATCAACTGCTGTTTCCTTGGTGATGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGGATATAATAGTTGGTAATGTTGGTGACTCAAGAGCAGTATTGGCAACTAGAGATAAAGACAACTATTTAATGGCTGTACAGTTGACAGTAGATTTGAAGCCTAATCTTCCAA.......................................................................................................................GAGAAGCTGCTAGAATACATAAATACAAAGGAAGGGTCTTTGCATTGCAAGATGAGCCAGAGGTTGCACGTGTATGGTTGCCAAACAGTGACTCTCCTGGCTTGGCAATGGGCAGAGCATTTGGTGA-TATTGTCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E455403" ref_strand="+" ref_description="SGN-E455403 [cSTS-26-O1]">
      <seq>gtgatacaatcttttgcggagtatttgatggacacggtccctatggccatatggtggcaaggaaagttcgagatactcttccatttctcctgtgttcagagtggcaagtcaaatccggtggtgatcaaagtaatacttctgagacaggaaataccaacggaggttcacatcttgatgatgtcttggatgatgatttgattgaagctatggaagctgagagcaacgagaagttcccagaaatacatcttccccttaaaagatcaatgttaaaagctttccgatcgatggataaagaactcaagttgcacccaactattgattgtttctgtagtgggtcaactgctgtttccttggtgatgcagggccaggatataatagttggtaatgttggtgactcaagagcagtattggcaactagagataaagacaactatttaatggctgtacagttgacagtagatttgaagcctaatcttccaagagaagctgctagaatacataaatacaaaggcagggtttttgcattgcaagatgangccagagttgcacgtgtatggttgccaaacagtgactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="89472" stop="91576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89772" g_stop="90133" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90134" i_stop="90945" i_length="812">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90946" g_stop="91063" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="480" r_length="118" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91064" i_stop="91182" i_length="119">
            <donor d_prob="0.067" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91183" g_stop="91276" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="574" r_length="94" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E455403" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E455403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89772" e_stop="90133"/>
          <exon e_start="90946" e_stop="91063"/>
          <exon e_start="91183" e_stop="91276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATACGATCTTTTGCGGAGTATTTGATGGACACGGTCCCTATGGCCATATGGTGGCAAGGAAAGTTCGAGATACTCTTCCGTTTCTCCTGTGTTCAGAGTGGCAAGTTAAATCCGGTGGTGATCAAAGTAATACTTCTGAGACAGGAAATACCAACGGAGGTTCACATCTTGATGATGTCTTGGATGATGATTTGATTGAAGCTATGGAAGCTGAGAACAATGAAAAGTTCCCAGAAATACATCTTCCCCTTAAAAGATCAATGTTAAAAGCTTTCCGGTCGATGGATAAAGAACTCAAGTTGCACCCTTCTATTGATTGTTTCTGTAGTGGATCAACTGCTGTTTCCTTGGTGATGCAGGTAATAATTTAGCTAATTTTTTTTTGTATAAACGAGGTTTATTTTCCTAAATCCTAATGTTTCAGAAAAAAAAAATTTGGGTACTTACTGATAATTTTTTTTTAATTAATATTTGGGTGCTTATAAATGGGTAATACTGTAATTATAGTAGCAAATTAGTGAGCTACTTTTTCTTATAGCCAATAAGTTCCCAAGGACCAGTGATGCAGGGTCCGAGTACATGACATGCGCCTAACACAAAACATCACACGCCACATGCTTACCCCTAGATCAAATCCCCGGAGGCAATAAATGAGCTATTTTTGAATTGCCAGTCATTGGCTAGTCATTGTCTTTGCTTTTGAAGGATTATCACTTTTGATGTCCTTGACTACTACATGGGTTACATCAAACATGAAAACCTGATACAGTTCATTTATGTATTGTATAAAATCCATTCAAATAATAAAATTTTGTGCATCCGAGTTCTCTACTGACTGCCCTCTCAATCTACTGGATGTTTTGTAATAAATTTGTCTTCTTCTGGTAGTTAACTCAATTTAGCAAGTTATCTTCTTGTTCTAAAATATTTTATTTAATAGTTAGACTTAAAACAGTTCCCTTAGTACTTCTCACTTGACTGGTACATGATCTTGAAGCATACTAGTTGACTTACCAAAAAAAAGGGAAAGAAACATACTAGTTGTAGAAAATAATCAAGTCTGAGTGGGAGGGGTTTAATATGAGTCTGCCACATATTTGGTTATTCTAGCTCTTTTATAATTTCTTAGCATTCCACAAGCATTTTAACTGATCTTTTTGTGGTGTCTCAGGGCCAGGATATAATTGTTGGCAATGTTGGTGACTCAAGAGCAGTATTGGCAACTAGAGATAAAGACAACTATTTAATGGCTGTACAGTTGACAGTAGATTTGAAGCCTAATCTTCCAAGTCTCTCTCTCTCTTCTTGATTCTATACATTACACCGAGAAGCTACAATGTAATTGTCTCTTTTTTTTTTTTTTGAAGAAAGTGTTTAAATTTATTTTTTCAATTGTTTTGTCTTGTAGGAGAAGCTGCTAGAATACATAAATACAAAGGCAGGGTTTTTGCATTGCAAGATGA-GCCAGAGGTTGCGCGTGTATGGTTGCCGAACAGTGACTC</genome_strand>
        <mrna_strand>GTGATACAATCTTTTGCGGAGTATTTGATGGACACGGTCCCTATGGCCATATGGTGGCAAGGAAAGTTCGAGATACTCTTCCATTTCTCCTGTGTTCAGAGTGGCAAGTCAAATCCGGTGGTGATCAAAGTAATACTTCTGAGACAGGAAATACCAACGGAGGTTCACATCTTGATGATGTCTTGGATGATGATTTGATTGAAGCTATGGAAGCTGAGAGCAACGAGAAGTTCCCAGAAATACATCTTCCCCTTAAAAGATCAATGTTAAAAGCTTTCCGATCGATGGATAAAGAACTCAAGTTGCACCCAACTATTGATTGTTTCTGTAGTGGGTCAACTGCTGTTTCCTTGGTGATGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGGATATAATAGTTGGTAATGTTGGTGACTCAAGAGCAGTATTGGCAACTAGAGATAAAGACAACTATTTAATGGCTGTACAGTTGACAGTAGATTTGAAGCCTAATCTTCCAA.......................................................................................................................GAGAAGCTGCTAGAATACATAAATACAAAGGCAGGGTTTTTGCATTGCAAGATGANGCCAGA-GTTGCACGTGTATGGTTGCCAAACAGTGACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240473" ref_strand="+" ref_description="SGN-E240473 [cLED-21-K18]">
      <seq>acttctgagacaggaaataccaacggaggttcacatcttgatgatgtcttggatgatgatttgattgaagctatggaagctgagaacaatgaaaagttcccagaaatacatctttcccttaaaagatcaatgttaaaagcttttcggtcgatggataaagaactcaagttgcacccttctattgattgtttctgttgtggatcaactgctgtttccttggtgatgcagggccaggatataattgttggcaatgttggtgactcaagagcagtattggcaactagagataaagacaactatttaatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="89606" stop="91325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89906" g_stop="90133" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90134" i_stop="90945" i_length="812">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90946" g_stop="91025" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="308" r_length="80" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E240473" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89906" e_stop="90133"/>
          <exon e_start="90946" e_stop="91025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCTGAGACAGGAAATACCAACGGAGGTTCACATCTTGATGATGTCTTGGATGATGATTTGATTGAAGCTATGGAAGCTGAGAACAATGAAAAGTTCCCAGAAATACATCTTCCCCTTAAAAGATCAATGTTAAAAGCTTTCCGGTCGATGGATAAAGAACTCAAGTTGCACCCTTCTATTGATTGTTTCTGTAGTGGATCAACTGCTGTTTCCTTGGTGATGCAGGTAATAATTTAGCTAATTTTTTTTTGTATAAACGAGGTTTATTTTCCTAAATCCTAATGTTTCAGAAAAAAAAAATTTGGGTACTTACTGATAATTTTTTTTTAATTAATATTTGGGTGCTTATAAATGGGTAATACTGTAATTATAGTAGCAAATTAGTGAGCTACTTTTTCTTATAGCCAATAAGTTCCCAAGGACCAGTGATGCAGGGTCCGAGTACATGACATGCGCCTAACACAAAACATCACACGCCACATGCTTACCCCTAGATCAAATCCCCGGAGGCAATAAATGAGCTATTTTTGAATTGCCAGTCATTGGCTAGTCATTGTCTTTGCTTTTGAAGGATTATCACTTTTGATGTCCTTGACTACTACATGGGTTACATCAAACATGAAAACCTGATACAGTTCATTTATGTATTGTATAAAATCCATTCAAATAATAAAATTTTGTGCATCCGAGTTCTCTACTGACTGCCCTCTCAATCTACTGGATGTTTTGTAATAAATTTGTCTTCTTCTGGTAGTTAACTCAATTTAGCAAGTTATCTTCTTGTTCTAAAATATTTTATTTAATAGTTAGACTTAAAACAGTTCCCTTAGTACTTCTCACTTGACTGGTACATGATCTTGAAGCATACTAGTTGACTTACCAAAAAAAAGGGAAAGAAACATACTAGTTGTAGAAAATAATCAAGTCTGAGTGGGAGGGGTTTAATATGAGTCTGCCACATATTTGGTTATTCTAGCTCTTTTATAATTTCTTAGCATTCCACAAGCATTTTAACTGATCTTTTTGTGGTGTCTCAGGGCCAGGATATAATTGTTGGCAATGTTGGTGACTCAAGAGCAGTATTGGCAACTAGAGATAAAGACAACTATTTAATGGC</genome_strand>
        <mrna_strand>ACTTCTGAGACAGGAAATACCAACGGAGGTTCACATCTTGATGATGTCTTGGATGATGATTTGATTGAAGCTATGGAAGCTGAGAACAATGAAAAGTTCCCAGAAATACATCTTTCCCTTAAAAGATCAATGTTAAAAGCTTTTCGGTCGATGGATAAAGAACTCAAGTTGCACCCTTCTATTGATTGTTTCTGTTGTGGATCAACTGCTGTTTCCTTGGTGATGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGGATATAATTGTTGGCAATGTTGGTGACTCAAGAGCAGTATTGGCAACTAGAGATAAAGACAACTATTTAATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206617" ref_strand="+" ref_description="SGN-E206617 [cLEC-31-D3]">
      <seq>tcaatgttaaaagctttccggtcgatggataaagaactcaagttgcacccttctattgattgtttctgtagtggatcaactgctgtttccttggtgatgcagggccaggatataattgttggcaatgttggtgactcaagagcagtattggcaactagagataaagacaactatttaatggctgtacagttgacagtagatttgaagcctaatcttccaagagaagctgctagaatacataaatacaaaggcagggtttttgcattgcaagatgagccagaggttgcgcgtgtatggttgccgaacagtgactctcctggcttggcaatggccagagcatttggtgatttttgtctcaaggattttgggttaatttctgtccctgatgtgtattaccaccgcataactgataggaacgaatttgttgttctagcaactgatggggtttgggatgtactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="89732" stop="91708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90032" g_stop="90133" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90134" i_stop="90945" i_length="812">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90946" g_stop="91063" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="220" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91064" i_stop="91182" i_length="119">
            <donor d_prob="0.067" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91183" g_stop="91406" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="444" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91407" i_stop="91568" i_length="162">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91569" g_stop="91583" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="459" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E206617" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90032" e_stop="90133"/>
          <exon e_start="90946" e_stop="91063"/>
          <exon e_start="91183" e_stop="91406"/>
          <exon e_start="91569" e_stop="91583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGTTAAAAGCTTTCCGGTCGATGGATAAAGAACTCAAGTTGCACCCTTCTATTGATTGTTTCTGTAGTGGATCAACTGCTGTTTCCTTGGTGATGCAGGTAATAATTTAGCTAATTTTTTTTTGTATAAACGAGGTTTATTTTCCTAAATCCTAATGTTTCAGAAAAAAAAAATTTGGGTACTTACTGATAATTTTTTTTTAATTAATATTTGGGTGCTTATAAATGGGTAATACTGTAATTATAGTAGCAAATTAGTGAGCTACTTTTTCTTATAGCCAATAAGTTCCCAAGGACCAGTGATGCAGGGTCCGAGTACATGACATGCGCCTAACACAAAACATCACACGCCACATGCTTACCCCTAGATCAAATCCCCGGAGGCAATAAATGAGCTATTTTTGAATTGCCAGTCATTGGCTAGTCATTGTCTTTGCTTTTGAAGGATTATCACTTTTGATGTCCTTGACTACTACATGGGTTACATCAAACATGAAAACCTGATACAGTTCATTTATGTATTGTATAAAATCCATTCAAATAATAAAATTTTGTGCATCCGAGTTCTCTACTGACTGCCCTCTCAATCTACTGGATGTTTTGTAATAAATTTGTCTTCTTCTGGTAGTTAACTCAATTTAGCAAGTTATCTTCTTGTTCTAAAATATTTTATTTAATAGTTAGACTTAAAACAGTTCCCTTAGTACTTCTCACTTGACTGGTACATGATCTTGAAGCATACTAGTTGACTTACCAAAAAAAAGGGAAAGAAACATACTAGTTGTAGAAAATAATCAAGTCTGAGTGGGAGGGGTTTAATATGAGTCTGCCACATATTTGGTTATTCTAGCTCTTTTATAATTTCTTAGCATTCCACAAGCATTTTAACTGATCTTTTTGTGGTGTCTCAGGGCCAGGATATAATTGTTGGCAATGTTGGTGACTCAAGAGCAGTATTGGCAACTAGAGATAAAGACAACTATTTAATGGCTGTACAGTTGACAGTAGATTTGAAGCCTAATCTTCCAAGTCTCTCTCTCTCTTCTTGATTCTATACATTACACCGAGAAGCTACAATGTAATTGTCTCTTTTTTTTTTTTTTGAAGAAAGTGTTTAAATTTATTTTTTCAATTGTTTTGTCTTGTAGGAGAAGCTGCTAGAATACATAAATACAAAGGCAGGGTTTTTGCATTGCAAGATGAGCCAGAGGTTGCGCGTGTATGGTTGCCGAACAGTGACTCTCCTGGCTTGGCAATGGCCAGAGCATTTGGTGATTTTTGTCTCAAGGATTTTGGGTTAATTTCTGTCCCTGATGTGTATTACCACCGCATAACTGATAGGAACGAATTTGTTGTTCTAGCAACTGATGGGGTACTTATTTCACCAAACATTATTTCACTACAAAAAGAAAATTCTATATCATCTCTACGTAAACAGAGTCTAAATTTCACCTTCTTTCTGACTTGGCTTAATCTGTTTCCATTTGTCAATACTTAGATTTGTCTCATGATGTAATTTCTTCGTTCTTTGTAGGTTTGGGATGTACTT</genome_strand>
        <mrna_strand>TCAATGTTAAAAGCTTTCCGGTCGATGGATAAAGAACTCAAGTTGCACCCTTCTATTGATTGTTTCTGTAGTGGATCAACTGCTGTTTCCTTGGTGATGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGGATATAATTGTTGGCAATGTTGGTGACTCAAGAGCAGTATTGGCAACTAGAGATAAAGACAACTATTTAATGGCTGTACAGTTGACAGTAGATTTGAAGCCTAATCTTCCAA.......................................................................................................................GAGAAGCTGCTAGAATACATAAATACAAAGGCAGGGTTTTTGCATTGCAAGATGAGCCAGAGGTTGCGCGTGTATGGTTGCCGAACAGTGACTCTCCTGGCTTGGCAATGGCCAGAGCATTTGGTGATTTTTGTCTCAAGGATTTTGGGTTAATTTCTGTCCCTGATGTGTATTACCACCGCATAACTGATAGGAACGAATTTGTTGTTCTAGCAACTGATGGG..................................................................................................................................................................GTTTGGGATGTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699881" ref_strand="+" ref_description="SGN-E699881 [FA11BH07]">
      <seq>ggttgccgaacagtgactctcctggcttggcaatggccagagcatttggtgatttttgtctcaaggattttgggttaatttctgtccctgatgtgtattaccaccgcataactgataggaacgaatttgttgttctagcaactgatggggtttgggatgtactttctaataaggaagccgtggatattgtggcctccgcaccaagtcgcgcaacagctgcccgagctcttgttgactgtgcgacaagagcttggaggctgaagtacccgacatcaaaaactgatgattgtgctgtagtatgccttttcctggaccgtgtacctgcacctgattctgtagtcacagcgaggcaacatgatttgacaaaggctcctgaagtggaaataaagacgattattactgatggcaaccttgaaagtgcagatagtaatgctactcatattgcagttcgtgaacattcagttactacaatagacgccagtgagatagttcctgttgacgaatcaatagaagaacagctagcggataagggtcttggacattctaagagaagcctagccgagtgcctttcaactgcagaagatcaggaatggtcagccctcgagggagtaaccagggttaatagccttcttagtcttcctagatttatgtctggtgacaaaaaatcagccagtcggaggaaatggttgtaagacatcaaggcatgatacctcaagggccaaggctaatgtaagtgctttgtattagctgttcttctcaaagattctgtaaatcaaaacactgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="90958" stop="92503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91258" g_stop="91406" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91407" i_stop="91568" i_length="162">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91569" g_stop="92203" g_length="635"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="784" r_length="635" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E699881" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91258" e_stop="91406"/>
          <exon e_start="91569" e_stop="92203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGCCGAACAGTGACTCTCCTGGCTTGGCAATGGCCAGAGCATTTGGTGATTTTTGTCTCAAGGATTTTGGGTTAATTTCTGTCCCTGATGTGTATTACCACCGCATAACTGATAGGAACGAATTTGTTGTTCTAGCAACTGATGGGGTACTTATTTCACCAAACATTATTTCACTACAAAAAGAAAATTCTATATCATCTCTACGTAAACAGAGTCTAAATTTCACCTTCTTTCTGACTTGGCTTAATCTGTTTCCATTTGTCAATACTTAGATTTGTCTCATGATGTAATTTCTTCGTTCTTTGTAGGTTTGGGATGTACTTTCTAATAAGGAAGCCGTGGATATTGTGGCCTCCGCACCAAGTCGCGCAACAGCTGCCCGAGCTCTTGTTGACTGTGCGACAAGAGCTTGGAGGCTGAAGTACCCGACATCAAAAACTGATGATTGTGCTGTAGTATGCCTTTTCCTGGACCGTGTACCTGCACCTGATTCTGTAGTCACAGCGAGGCAACATGATTTGACAAAGGCTCCTGAAGTGGAAATAAAGACGATTATTACTGATGGCAACCTTGAAAGTGCAGATAGTAATGCTACTCATATTGCAGTTCGTGAACATTCAGTTACTACAATAGACGCCAGTGAGATAGTTCCTGTTGACGAATCAATAGAAGAACAGCTAGCGGATAAGGGTCTTGGACATTCTAAGAGAAGCCTAGCCGAGTGCCTTTCAACTGCAGAAGATCAGGAATGGTCAGCCCTCGAGGGAGTAACCAGGGTTAATAGCCTTCTTAGTCTTCCTAGATTTATGTCTGGTGACAAAAAATCAGCCAGTCGGAGGAAATGGTTGTAAGACATCAAGGCATGATACCTCAAGGGCCAAGGCTAATGTAAGTGCTTTGTATTAGCTGTTCTTCTCAAAGATTCTGTAAATCAAAACACTGT</genome_strand>
        <mrna_strand>GGTTGCCGAACAGTGACTCTCCTGGCTTGGCAATGGCCAGAGCATTTGGTGATTTTTGTCTCAAGGATTTTGGGTTAATTTCTGTCCCTGATGTGTATTACCACCGCATAACTGATAGGAACGAATTTGTTGTTCTAGCAACTGATGGG..................................................................................................................................................................GTTTGGGATGTACTTTCTAATAAGGAAGCCGTGGATATTGTGGCCTCCGCACCAAGTCGCGCAACAGCTGCCCGAGCTCTTGTTGACTGTGCGACAAGAGCTTGGAGGCTGAAGTACCCGACATCAAAAACTGATGATTGTGCTGTAGTATGCCTTTTCCTGGACCGTGTACCTGCACCTGATTCTGTAGTCACAGCGAGGCAACATGATTTGACAAAGGCTCCTGAAGTGGAAATAAAGACGATTATTACTGATGGCAACCTTGAAAGTGCAGATAGTAATGCTACTCATATTGCAGTTCGTGAACATTCAGTTACTACAATAGACGCCAGTGAGATAGTTCCTGTTGACGAATCAATAGAAGAACAGCTAGCGGATAAGGGTCTTGGACATTCTAAGAGAAGCCTAGCCGAGTGCCTTTCAACTGCAGAAGATCAGGAATGGTCAGCCCTCGAGGGAGTAACCAGGGTTAATAGCCTTCTTAGTCTTCCTAGATTTATGTCTGGTGACAAAAAATCAGCCAGTCGGAGGAAATGGTTGTAAGACATCAAGGCATGATACCTCAAGGGCCAAGGCTAATGTAAGTGCTTTGTATTAGCTGTTCTTCTCAAAGATTCTGTAAATCAAAACACTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E552630" ref_strand="+" ref_description="SGN-E552630 [cTSB-4-I20]">
      <seq>cgtggatattgtggcctccgcaccaagtcgcgcaacagctgcccgagctcttgttgactgtgcgacaagagcttggaggctgaagtacccgacatcaaaaactgatgattgtgctgtagtatgccttttcctggaccgtgtacctgcacctgattctgtagtcacagcgaggcaacatgatttgacaaaggctcctgaagtggaaataaagacgattattactgatggcaaccttgaaagtgcagatagtaatgctactcatattgcagttcgtgaacattcagttactacaatagacgccagtgagatagttcctgttgacgaatcaatagaagaacagctagcggataagggtcttggacattctaagagaagcctagccgagtgcctttcaactgcagaagatcaggaatggtcagccctcgagggagtaaccagggttaatagccttcttagtcttcctagatttatgtctggtgacaaaaaatcagccagtcggaggaaatggttgtaagacatcaaggcatgatacctcaagggccaaggctaatgtaagtgctttgtattagctgttcttctcaaagattctgtaaatcaaaacactgtagcagcagtagtagtataaaagactaagtgctggatcattgcctggaatgtaaaacagcctgtgcttgatgactatccaaattggcaatgctttttggtagaatatttatgattgatgagaacaacgcgaggcctcagacagaaatagtaacattttcttgtgctgtgtagtattttactttcatgtccaagatggaatcccctctggtgcatgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="91298" stop="92720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91598" g_stop="92420" g_length="823"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="823" r_length="823" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-E552630" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91598" e_stop="92420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGGATATTGTGGCCTCCGCACCAAGTCGCGCAACAGCTGCCCGAGCTCTTGTTGACTGTGCGACAAGAGCTTGGAGGCTGAAGTACCCGACATCAAAAACTGATGATTGTGCTGTAGTATGCCTTTTCCTGGACCGTGTACCTGCACCTGATTCTGTAGTCACAGCGAGGCAACATGATTTGACAAAGGCTCCTGAAGTGGAAATAAAGACGATTATTACTGATGGCAACCTTGAAAGTGCAGATAGTAATGCTACTCATATTGCAGTTCGTGAACATTCAGTTACTACAATAGACGCCAGTGAGATAGTTCCTGTTGACGAATCAATAGAAGAACAGCTAGCGGATAAGGGTCTTGGACATTCTAAGAGAAGCCTAGCCGAGTGCCTTTCAACTGCAGAAGATCAGGAATGGTCAGCCCTCGAGGGAGTAACCAGGGTTAATAGCCTTCTTAGTCTTCCTAGATTTATGTCTGGTGACAAAAAATCAGCCAGTCGGAGGAAATGGTTGTAAGACATCAAGGCATGATACCTCAAGGGCCAAGGCTAATGTAAGTGCTTTGTATTAGCTGTTCTTCTCAAAGATTCTGTAAATCAAAACACTGTAGCAGCAGTAGTAGTATAAAAGACTAAGTGCTGGATCATTGCCTGGAATGTAAAACAGCCTGTGCTTGATGACTATCCAAATTGGCAATGCTTTTTGGTAGAATATTTATGATTGATGAGAACAACGCGAGGCCTCAGACAGAAATAGTAACATTTTCTTGTGCTGTGTAGTATTTTACTTTCATGTCCAAGATGGAATCCCCTCTGGTGCATGTTT</genome_strand>
        <mrna_strand>CGTGGATATTGTGGCCTCCGCACCAAGTCGCGCAACAGCTGCCCGAGCTCTTGTTGACTGTGCGACAAGAGCTTGGAGGCTGAAGTACCCGACATCAAAAACTGATGATTGTGCTGTAGTATGCCTTTTCCTGGACCGTGTACCTGCACCTGATTCTGTAGTCACAGCGAGGCAACATGATTTGACAAAGGCTCCTGAAGTGGAAATAAAGACGATTATTACTGATGGCAACCTTGAAAGTGCAGATAGTAATGCTACTCATATTGCAGTTCGTGAACATTCAGTTACTACAATAGACGCCAGTGAGATAGTTCCTGTTGACGAATCAATAGAAGAACAGCTAGCGGATAAGGGTCTTGGACATTCTAAGAGAAGCCTAGCCGAGTGCCTTTCAACTGCAGAAGATCAGGAATGGTCAGCCCTCGAGGGAGTAACCAGGGTTAATAGCCTTCTTAGTCTTCCTAGATTTATGTCTGGTGACAAAAAATCAGCCAGTCGGAGGAAATGGTTGTAAGACATCAAGGCATGATACCTCAAGGGCCAAGGCTAATGTAAGTGCTTTGTATTAGCTGTTCTTCTCAAAGATTCTGTAAATCAAAACACTGTAGCAGCAGTAGTAGTATAAAAGACTAAGTGCTGGATCATTGCCTGGAATGTAAAACAGCCTGTGCTTGATGACTATCCAAATTGGCAATGCTTTTTGGTAGAATATTTATGATTGATGAGAACAACGCGAGGCCTCAGACAGAAATAGTAACATTTTCTTGTGCTGTGTAGTATTTTACTTTCATGTCCAAGATGGAATCCCCTCTGGTGCATGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E747577" ref_strand="+" ref_description="SGN-E747577 [GI|4160440]">
      <seq>cctctgtccttccccccaggtcccctttttttcctttctctctctcctttatttctcttttcataagcatattctttctctctctagggttttcactttcacctgaaatagtgttgttaaattgaatgatatgttaggatcctttggttcttcatcatctcaatctcaccctcatcatgatgaagaatcttctgatcatcatcaacagcgtagattcaccgctactgctacaactatcaccaccaccaccatcactacctcaccagctattcaaatccgccagctactcattagctgtgcggagttgatttcgcagtccgatttctcggccgcgaaaagactccttactatattatcaactaactcatctccttttggtgattcaactgaacggttagtccatcaatttactcgcgcactttcccttcgtctcaaccgctatatatcgtcaaccaccaatcatttcatgacacctgttgaaacaactccaactgattcttcttcttcgtcatcattagctctaattcaatcatcatatctatctctaaaccaagttacccctttcataaggtttactcaattaaccgctaatcaagcgattttagaagcgattaacggtaatcatcaagcaatccacatcgttgatttcgacattaatcacggggttcaatggccaccgttaatgcaagcactagctgatcgttaccctgctcccactcttcgaatcaccggtactggaaatgaccttgatacccttcgtagaacaggtgatcgtttagctaaatttgctcactcattagggttgagatttcaattccatcctctttatatagccaataataaccacgatcacgatgaagatccttctattatttcctccattgtactactccctgatgaaaccctagctatcaactgtgttttctacctccaccgccttttaaaagaccgcgaaaagttaaggatttttttgcatagggttaagtcaatgaaccctaaaattgttacaatcgcggagaaggaagcaaatcataaccatcctctttttttacaaagattcatcgaggcgttggattattatacagctgtgtttgattcactggaagctacattgccaccgggtagtcgagagaggatgacagttgaacaagtgtggtttgggagagagattgttgatatcgttgcgatggaaggagataaaaggaaagaaagacatgaaaggtttagatcatgggaagttatgttgaggagttgtggatttagtaatgttgctttaagcccttttgcattatcacaagctaagcttcttttgagacttcattatccttctgaaggctatcaactcggagtttcgagtaattctttcttcttaggttggcaaaatcaaccccttttctccatctcgtcttggcgttgagaaaaactatcaaatagccaacttcagagggtaattaagactactgatagtttaggagggatctgaagaaaacgcgtggagtgaaaaccctaaataaccagattttctaatgaagttgtagtagtagaaatttgcatggtgaagaacaatattgaagaggtattgaaatttcatgttttttttgttttacttattgatatgaatgttttaaaatttttaacatagaggactaggttgatgatatatagtatttaagttaactagtctttgtataacgcaagatcttgatcaacttatttttatttttaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="102115" stop="99787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101815" g_stop="100087" g_length="1729"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1729" r_length="1729" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E747577" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101815" e_stop="100087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTGTCCTTCCCCCCAGGTCCCCTTTTTTTCCTTTCTCTCTCTCCTTTATTTCTCTTTTCATAAGCATATTCTTTCTCTCTCTAGGGTTTTCACTTTCACCTGAAATAGTGTTGTTAAATTGAATGATATGTTAGGATCCTTTGGTTCTTCATCATCTCAATCTCACCCTCATCATGATGAAGAATCTTCTGATCATCATCAACAGCGTAGATTCACCGCTACTGCTACAACTATCACCACCACCACCATCACTACCTCACCAGCTATTCAAATCCGCCAGCTACTCATTAGCTGTGCGGAGTTGATTTCGCAGTCCGATTTCTCGGCCGCGAAAAGACTCCTTACTATATTATCAACTAACTCATCTCCTTTTGGTGATTCAACTGAACGGTTAGTCCATCAATTTACTCGCGCACTTTCCCTTCGTCTCAACCGCTATATATCGTCAACCACCAATCATTTCATGACACCTGTTGAAACAACTCCAACTGATTCTTCTTCTTCGTCATCATTAGCTCTAATTCAATCATCATATCTATCTCTAAACCAAGTTACCCCTTTCATAAGGTTTACTCAATTAACCGCTAATCAAGCGATTTTAGAAGCGATTAACGGTAATCATCAAGCAATCCACATCGTTGATTTCGACATTAATCACGGGGTTCAATGGCCACCGTTAATGCAAGCACTAGCTGATCGTTACCCTGCTCCCACTCTTCGAATCACCGGTACTGGAAATGACCTTGATACCCTTCGTAGAACAGGTGATCGTTTAGCTAAATTTGCTCACTCATTAGGGTTGAGATTTCAATTCCATCCTCTTTATATAGCCAATAATAACCACGATCACGATGAAGATCCTTCTATTATTTCCTCCATTGTACTACTCCCTGATGAAACCCTAGCTATCAACTGTGTTTTCTACCTCCACCGCCTTTTAAAAGACCGCGAAAAGTTAAGGATTTTTTTGCATAGGGTTAAGTCAATGAACCCTAAAATTGTTACAATCGCGGAGAAGGAAGCAAATCATAACCATCCTCTTTTTTTACAAAGATTCATCGAGGCGTTGGATTATTATACAGCTGTGTTTGATTCACTGGAAGCTACATTGCCACCGGGTAGTCGAGAGAGGATGACAGTTGAACAAGTGTGGTTTGGGAGAGAGATTGTTGATATCGTTGCGATGGAAGGAGATAAAAGGAAAGAAAGACATGAAAGGTTTAGATCATGGGAAGTTATGTTGAGGAGTTGTGGATTTAGTAATGTTGCTTTAAGCCCTTTTGCATTATCACAAGCTAAGCTTCTTTTGAGACTTCATTATCCTTCTGAAGGCTATCAACTCGGAGTTTCGAGTAATTCTTTCTTCTTAGGTTGGCAAAATCAACCCCTTTTCTCCATCTCGTCTTGGCGTTGAGAAAAACTATCAAATAGCCAACTTCAGAGGGTAATTAAGACTACTGATAGTTTAGGAGGGATCTGAAGAAAACGCGTGGAGTGAAAACCCTAAATAACCAGATTTTCTAATGAAGTTGTAGTAGTAGAAATTTGCATGGTGAAGAACAATATTGAAGAGGTATTGAAATTTCATGTTTTTTTTGTTTTACTTATTGATATGAATGTTTTAAAATTTTTAACATAGAGGACTAGGTTGATGATATATAGTATTTAAGTTAACTAGTCTTTGTATAACGCAAGATCTTGATCAACTTATTTTTATTTTTAATTA</genome_strand>
        <mrna_strand>CCTCTGTCCTTCCCCCCAGGTCCCCTTTTTTTCCTTTCTCTCTCTCCTTTATTTCTCTTTTCATAAGCATATTCTTTCTCTCTCTAGGGTTTTCACTTTCACCTGAAATAGTGTTGTTAAATTGAATGATATGTTAGGATCCTTTGGTTCTTCATCATCTCAATCTCACCCTCATCATGATGAAGAATCTTCTGATCATCATCAACAGCGTAGATTCACCGCTACTGCTACAACTATCACCACCACCACCATCACTACCTCACCAGCTATTCAAATCCGCCAGCTACTCATTAGCTGTGCGGAGTTGATTTCGCAGTCCGATTTCTCGGCCGCGAAAAGACTCCTTACTATATTATCAACTAACTCATCTCCTTTTGGTGATTCAACTGAACGGTTAGTCCATCAATTTACTCGCGCACTTTCCCTTCGTCTCAACCGCTATATATCGTCAACCACCAATCATTTCATGACACCTGTTGAAACAACTCCAACTGATTCTTCTTCTTCGTCATCATTAGCTCTAATTCAATCATCATATCTATCTCTAAACCAAGTTACCCCTTTCATAAGGTTTACTCAATTAACCGCTAATCAAGCGATTTTAGAAGCGATTAACGGTAATCATCAAGCAATCCACATCGTTGATTTCGACATTAATCACGGGGTTCAATGGCCACCGTTAATGCAAGCACTAGCTGATCGTTACCCTGCTCCCACTCTTCGAATCACCGGTACTGGAAATGACCTTGATACCCTTCGTAGAACAGGTGATCGTTTAGCTAAATTTGCTCACTCATTAGGGTTGAGATTTCAATTCCATCCTCTTTATATAGCCAATAATAACCACGATCACGATGAAGATCCTTCTATTATTTCCTCCATTGTACTACTCCCTGATGAAACCCTAGCTATCAACTGTGTTTTCTACCTCCACCGCCTTTTAAAAGACCGCGAAAAGTTAAGGATTTTTTTGCATAGGGTTAAGTCAATGAACCCTAAAATTGTTACAATCGCGGAGAAGGAAGCAAATCATAACCATCCTCTTTTTTTACAAAGATTCATCGAGGCGTTGGATTATTATACAGCTGTGTTTGATTCACTGGAAGCTACATTGCCACCGGGTAGTCGAGAGAGGATGACAGTTGAACAAGTGTGGTTTGGGAGAGAGATTGTTGATATCGTTGCGATGGAAGGAGATAAAAGGAAAGAAAGACATGAAAGGTTTAGATCATGGGAAGTTATGTTGAGGAGTTGTGGATTTAGTAATGTTGCTTTAAGCCCTTTTGCATTATCACAAGCTAAGCTTCTTTTGAGACTTCATTATCCTTCTGAAGGCTATCAACTCGGAGTTTCGAGTAATTCTTTCTTCTTAGGTTGGCAAAATCAACCCCTTTTCTCCATCTCGTCTTGGCGTTGAGAAAAACTATCAAATAGCCAACTTCAGAGGGTAATTAAGACTACTGATAGTTTAGGAGGGATCTGAAGAAAACGCGTGGAGTGAAAACCCTAAATAACCAGATTTTCTAATGAAGTTGTAGTAGTAGAAATTTGCATGGTGAAGAACAATATTGAAGAGGTATTGAAATTTCATGTTTTTTTTGTTTTACTTATTGATATGAATGTTTTAAAATTTTTAACATAGAGGACTAGGTTGATGATATATAGTATTTAAGTTAACTAGTCTTTGTATAACGCAAGATCTTGATCAACTTATTTTTATTTTTAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352791" ref_strand="+" ref_description="SGN-E352791 [cTOS-11-C11]">
      <seq>ggtgattggataatgtcttctttctgtggtttgcgctggcttggtgttggaggtactctgttagtcaataaaagagacgatttctccacaatatgcaatgtgcgaccctggctggttgtgtgttttgatggctgtgaatttgggtgccatgatggttggcaatttcatcggatcattattcatcattgacagaaggcggattttgtaagaggagcagatcaagataggctggagacgcgaagttcctttttacatactagtaacatttcatattttgagtagcacaagttggtgatgcatattgggtttgctgcaaccactcttttgtgtctctatttgtgcttgaactagacttttgtttattttattttatagccttttctcctagtttaggcatatgcattattgtgcttgctctctaccttttgaattacaaacaccctgttaaaccgttttaaatgaaccatgattattgatcaattaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="106900" stop="105816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106600" g_stop="106115" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E352791" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106600" e_stop="106115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGATTGGATAATGTCTTCTTTCTGTGGTTTGCGCTGGCTTGGTGTTGGAGGTACTCTGTTAGTCAATAAAAGAGACGATTTCTCCACAATATGCAATGTGCGACCCTGGCTGGTTGTGTGTTTTGATGGCTGTGAATTTGGGTGCCATGATGGTTGGCAATTTCATCGGATCATTATTCATCATTGACAGAAGGCGGATTTTGTAAGAGGAGCAGATCAAGATAGGCTGGAGACGCGAAGTTCCTTTTTACATACTAGTAACATTTCATATTTTGAGTAGCACAAGTTGGTGATGCATATTGGGTTTGCTGCAACCACTCTTTTGTGTCTCTATTTGTGCTTGAACTAGACTTTTGTTTATTTTATTTTATAGCCTTTTCTCCTAGTTTAGGCATATGCATTATTGTGCTTGCTCTCTACCTTTTGAATTACAAACACCCTGTTAAACCGTTTTAAATGAACCATGATTATTGATCAATTATAG</genome_strand>
        <mrna_strand>GGTGATTGGATAATGTCTTCTTTCTGTGGTTTGCGCTGGCTTGGTGTTGGAGGTACTCTGTTAGTCAATAAAAGAGACGATTTCTCCACAATATGCAATGTGCGACCCTGGCTGGTTGTGTGTTTTGATGGCTGTGAATTTGGGTGCCATGATGGTTGGCAATTTCATCGGATCATTATTCATCATTGACAGAAGGCGGATTTTGTAAGAGGAGCAGATCAAGATAGGCTGGAGACGCGAAGTTCCTTTTTACATACTAGTAACATTTCATATTTTGAGTAGCACAAGTTGGTGATGCATATTGGGTTTGCTGCAACCACTCTTTTGTGTCTCTATTTGTGCTTGAACTAGACTTTTGTTTATTTTATTTTATAGCCTTTTCTCCTAGTTTAGGCATATGCATTATTGTGCTTGCTCTCTACCTTTTGAATTACAAACACCCTGTTAAACCGTTTTAAATGAACCATGATTATTGATCAATTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355512" ref_strand="+" ref_description="SGN-E355512 [cTOS-25-G12]">
      <seq>ggtgattggataatgtcttctttctgtggtttgcgctggcttggtgttggaggtactctgttagtcaataaaagagacgatttctccacaatatgcaatgtgcgaccctggctggttgtgtgttttgatggctgtgaatttgggtgccatgatggttggcaatttcatcggatcattattcatcattgacagaaggcggattttgtaagaggagcagatcaagataggctggagacgcgaagttcctttttacatactagtaacatttcatattttgagtagcacaagttggtgatgcatattgggtttgctgcaaccactcttttgtgtctctatttgtgcttgaactagacttttgtttattttattttatagccttttctcctagtttaggcatatgcattattgtgcttgctctctaccttttgaattacaaacaccctgttaaaccgttttaaatgaaccatgattattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="106900" stop="105824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106600" g_stop="106124" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E355512" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106600" e_stop="106124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGATTGGATAATGTCTTCTTTCTGTGGTTTGCGCTGGCTTGGTGTTGGAGGTACTCTGTTAGTCAATAAAAGAGACGATTTCTCCACAATATGCAATGTGCGACCCTGGCTGGTTGTGTGTTTTGATGGCTGTGAATTTGGGTGCCATGATGGTTGGCAATTTCATCGGATCATTATTCATCATTGACAGAAGGCGGATTTTGTAAGAGGAGCAGATCAAGATAGGCTGGAGACGCGAAGTTCCTTTTTACATACTAGTAACATTTCATATTTTGAGTAGCACAAGTTGGTGATGCATATTGGGTTTGCTGCAACCACTCTTTTGTGTCTCTATTTGTGCTTGAACTAGACTTTTGTTTATTTTATTTTATAGCCTTTTCTCCTAGTTTAGGCATATGCATTATTGTGCTTGCTCTCTACCTTTTGAATTACAAACACCCTGTTAAACCGTTTTAAATGAACCATGATTATTGAT</genome_strand>
        <mrna_strand>GGTGATTGGATAATGTCTTCTTTCTGTGGTTTGCGCTGGCTTGGTGTTGGAGGTACTCTGTTAGTCAATAAAAGAGACGATTTCTCCACAATATGCAATGTGCGACCCTGGCTGGTTGTGTGTTTTGATGGCTGTGAATTTGGGTGCCATGATGGTTGGCAATTTCATCGGATCATTATTCATCATTGACAGAAGGCGGATTTTGTAAGAGGAGCAGATCAAGATAGGCTGGAGACGCGAAGTTCCTTTTTACATACTAGTAACATTTCATATTTTGAGTAGCACAAGTTGGTGATGCATATTGGGTTTGCTGCAACCACTCTTTTGTGTCTCTATTTGTGCTTGAACTAGACTTTTGTTTATTTTATTTTATAGCCTTTTCTCCTAGTTTAGGCATATGCATTATTGTGCTTGCTCTCTACCTTTTGAATTACAAACACCCTGTTAAACCGTTTTAAATGAACCATGATTATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349909" ref_strand="+" ref_description="SGN-E349909 [cTOS-3-E18]">
      <seq>tgctgctaaagcattaactgatttatctctaaggtactgctttcatgtgacagatgctggtgtgaagatgttgttggatagaccaaatcacaaggttagtctactgcaaaagcttgatctttataaatgtcgcggtctgtctggtgattggataatgtcttctttctgtggtttgcgctggcttggtgttggaggtactctgttagtcaataaaagagacgatttctccacaatatgcaatgtgcgaccctggctggttgtgtgttttgatggctgtgaatttgggtgccatgatggttggcaatttcatcggatcattattcatcattgacagaaggcggattttgtaagaggagcagatcaagataggctggagacgcgaagttcctttttacatactagtaacatttcatattttgagtagcacaagttggtgatgcatattgggtttgctgcaaccactcttttgtgtctctatttgtgcttgaactagacttttgtttattttattttatagccttttctcctaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="107042" stop="105914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106742" g_stop="106214" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="530" polyA_stop="552"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E349909" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106742" e_stop="106214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGCTAAAGCATTAACTGATTTATCTCTAAGGTACTGCTTTCATGTGACAGATGCTGGTGTGAAGATGTTGTTGGATAGACCAAATCACAAGGTTAGTCTACTGCAAAAGCTTGATCTTTATAAATGTCGCGGTCTGTCTGGTGATTGGATAATGTCTTCTTTCTGTGGTTTGCGCTGGCTTGGTGTTGGAGGTACTCTGTTAGTCAATAAAAGAGACGATTTCTCCACAATATGCAATGTGCGACCCTGGCTGGTTGTGTGTTTTGATGGCTGTGAATTTGGGTGCCATGATGGTTGGCAATTTCATCGGATCATTATTCATCATTGACAGAAGGCGGATTTTGTAAGAGGAGCAGATCAAGATAGGCTGGAGACGCGAAGTTCCTTTTTACATACTAGTAACATTTCATATTTTGAGTAGCACAAGTTGGTGATGCATATTGGGTTTGCTGCAACCACTCTTTTGTGTCTCTATTTGTGCTTGAACTAGACTTTTGTTTATTTTATTTTATAGCCTTTTCTCCTA</genome_strand>
        <mrna_strand>TGCTGCTAAAGCATTAACTGATTTATCTCTAAGGTACTGCTTTCATGTGACAGATGCTGGTGTGAAGATGTTGTTGGATAGACCAAATCACAAGGTTAGTCTACTGCAAAAGCTTGATCTTTATAAATGTCGCGGTCTGTCTGGTGATTGGATAATGTCTTCTTTCTGTGGTTTGCGCTGGCTTGGTGTTGGAGGTACTCTGTTAGTCAATAAAAGAGACGATTTCTCCACAATATGCAATGTGCGACCCTGGCTGGTTGTGTGTTTTGATGGCTGTGAATTTGGGTGCCATGATGGTTGGCAATTTCATCGGATCATTATTCATCATTGACAGAAGGCGGATTTTGTAAGAGGAGCAGATCAAGATAGGCTGGAGACGCGAAGTTCCTTTTTACATACTAGTAACATTTCATATTTTGAGTAGCACAAGTTGGTGATGCATATTGGGTTTGCTGCAACCACTCTTTTGTGTCTCTATTTGTGCTTGAACTAGACTTTTGTTTATTTTATTTTATAGCCTTTTCTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352356" ref_strand="+" ref_description="SGN-E352356 [cTOS-9-M2]">
      <seq>tgctgctaaagcattaactgatttatctctaaggtactgctttcatgtgacagatgctggtgtgaagatgttgttggatagaccaaatcacaaggttagtctactgcaaaagcttgatctttataaatgtcgcggtctgtctggtgattggataatgtcttctttctgtggtttgcgctggcttggtgttggaggtactctgttagtcaataaaagagacgatttctccacaatatgcaatgtgcgaccctggctggttgtgtgttttgatggctgtgaatttgggtgccatgatggttggcaatttcatcggatcattattcatcattgacagaaggcggattttgtaagaggagcagatcaagataggctggagacgcgaagttcctttttacatactagtaacatttcatattttgagtagcacaagttggtgatgcatattgggtttgctgcaaccactcttttgtgtctctatttgtgcttgaaactagactttgtttattttattttatagccttttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="107042" stop="105916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106742" g_stop="106216" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E352356" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106742" e_stop="106216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGCTAAAGCATTAACTGATTTATCTCTAAGGTACTGCTTTCATGTGACAGATGCTGGTGTGAAGATGTTGTTGGATAGACCAAATCACAAGGTTAGTCTACTGCAAAAGCTTGATCTTTATAAATGTCGCGGTCTGTCTGGTGATTGGATAATGTCTTCTTTCTGTGGTTTGCGCTGGCTTGGTGTTGGAGGTACTCTGTTAGTCAATAAAAGAGACGATTTCTCCACAATATGCAATGTGCGACCCTGGCTGGTTGTGTGTTTTGATGGCTGTGAATTTGGGTGCCATGATGGTTGGCAATTTCATCGGATCATTATTCATCATTGACAGAAGGCGGATTTTGTAAGAGGAGCAGATCAAGATAGGCTGGAGACGCGAAGTTCCTTTTTACATACTAGTAACATTTCATATTTTGAGTAGCACAAGTTGGTGATGCATATTGGGTTTGCTGCAACCACTCTTTTGTGTCTCTATTTGTGCTTG-AACTAGACTTTTGTTTATTTTATTTTATAGCCTTTTCTCC</genome_strand>
        <mrna_strand>TGCTGCTAAAGCATTAACTGATTTATCTCTAAGGTACTGCTTTCATGTGACAGATGCTGGTGTGAAGATGTTGTTGGATAGACCAAATCACAAGGTTAGTCTACTGCAAAAGCTTGATCTTTATAAATGTCGCGGTCTGTCTGGTGATTGGATAATGTCTTCTTTCTGTGGTTTGCGCTGGCTTGGTGTTGGAGGTACTCTGTTAGTCAATAAAAGAGACGATTTCTCCACAATATGCAATGTGCGACCCTGGCTGGTTGTGTGTTTTGATGGCTGTGAATTTGGGTGCCATGATGGTTGGCAATTTCATCGGATCATTATTCATCATTGACAGAAGGCGGATTTTGTAAGAGGAGCAGATCAAGATAGGCTGGAGACGCGAAGTTCCTTTTTACATACTAGTAACATTTCATATTTTGAGTAGCACAAGTTGGTGATGCATATTGGGTTTGCTGCAACCACTCTTTTGTGTCTCTATTTGTGCTTGAAACTAGAC-TTTGTTTATTTTATTTTATAGCCTTTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356591" ref_strand="+" ref_description="SGN-E356591 [cTOS-21-F3]">
      <seq>tgctgctaaagcattaactgatttatctctaaggtactgctttcatgtgacagatgctggtgtgaagatgttgttggatagaccaaatcacaaggttagtctactgcaaaagcttgatctttataaatgtcgcggtctgtctggtgattggataatgtcttctttctgtggtttgcgctggcttggtgttggaggtactctgttagtcaataaaagagacgatttctccacaatatgcaatgtgcgaccctggctggttgtgtgttttgatggctgtgaatttgggtgccatgatggttggcaatttcatcggatcattattcatcattgacagaaggcggattttgtaagaggagcagatcaagataggctggagacgcgaagttcctttttacatactagtaacatttcatattttgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-jpcAL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="107042" stop="106021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106742" g_stop="106321" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-E356591" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106742" e_stop="106321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGCTAAAGCATTAACTGATTTATCTCTAAGGTACTGCTTTCATGTGACAGATGCTGGTGTGAAGATGTTGTTGGATAGACCAAATCACAAGGTTAGTCTACTGCAAAAGCTTGATCTTTATAAATGTCGCGGTCTGTCTGGTGATTGGATAATGTCTTCTTTCTGTGGTTTGCGCTGGCTTGGTGTTGGAGGTACTCTGTTAGTCAATAAAAGAGACGATTTCTCCACAATATGCAATGTGCGACCCTGGCTGGTTGTGTGTTTTGATGGCTGTGAATTTGGGTGCCATGATGGTTGGCAATTTCATCGGATCATTATTCATCATTGACAGAAGGCGGATTTTGTAAGAGGAGCAGATCAAGATAGGCTGGAGACGCGAAGTTCCTTTTTACATACTAGTAACATTTCATATTTTGAGT</genome_strand>
        <mrna_strand>TGCTGCTAAAGCATTAACTGATTTATCTCTAAGGTACTGCTTTCATGTGACAGATGCTGGTGTGAAGATGTTGTTGGATAGACCAAATCACAAGGTTAGTCTACTGCAAAAGCTTGATCTTTATAAATGTCGCGGTCTGTCTGGTGATTGGATAATGTCTTCTTTCTGTGGTTTGCGCTGGCTTGGTGTTGGAGGTACTCTGTTAGTCAATAAAAGAGACGATTTCTCCACAATATGCAATGTGCGACCCTGGCTGGTTGTGTGTTTTGATGGCTGTGAATTTGGGTGCCATGATGGTTGGCAATTTCATCGGATCATTATTCATCATTGACAGAAGGCGGATTTTGTAAGAGGAGCAGATCAAGATAGGCTGGAGACGCGAAGTTCCTTTTTACATACTAGTAACATTTCATATTTTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>531</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="119" PGL_stop="775"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="119" e_stop="775"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="119" e_stop="775" e_length="657"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119" stop="775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120" stop="775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="505" stop="770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595215" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCACGGATTTACTCCAGACTCTTACACCTATTCTTCATTGATCAGAGGATTATGCTTGGAAAAGATGTTGGTGGCTGCTGTCGATGTATTCTACATGATGGAAGAAAATGGATATAGGCCTGATGTTGACAATTTCAATGCGCTTGTGCTTGGACTATGCAAATCCAAAAGAACAGACTTGTCATTAAAGGTATTTGAGGACATGATCAGCAAAGGTTATATGCCTAATGAGATAACATATACCATTATAGTCGAAGGCATCATCCATGAAGATCACAAGGAGCTTGCATCAGTAGTCCTAAGGGAACTGCACCGGAAAGAAGTAATAAGTAGAAATACTGTTGAAAGACTTGCTATGCAATATGAGCTTGAAGATATGGCAGTATGCTGATCTTTCACAAAACCAATGGCTTGTGGTCACAGGATGAGAAACTAACAAAGGTTCTTCATTAGCAAATGCTAAATACACCAAATAAACAAAGTTATTCTCATGCTGTATGTCAGATGGTAACTTTACACAACTAATAAACCTTCGGGATAATTGGTTTTCAGATATGGTAGTTGATTCATAGTAGGCTTCAAATAGGTGAGTGGTGAAACTTGTCAATTCTCACTAGCTTACTCTTGCTACTCAATTGCTGTTACAAAAAAAGTTGT</gDNA_template>
            <first_frame> P  R  I  Y  S  R  L  L  H  L  F  F  I  D  Q  R  I  M  L  G  K  D  V  G  G  C  C  R  C  I  L  H  D  G  R  K  W  I  *  A  *  C  *  Q  F  Q  C  A  C  A  W  T  M  Q  I  Q  K  N  R  L  V  I  K  G  I  *  G  H  D  Q  Q  R  L  Y  A  *  *  D  N  I  Y  H  Y  S  R  R  H  H  P  *  R  S  Q  G  A  C  I  S  S  P  K  G  T  A  P  E  R  S  N  K  *  K  Y  C  *  K  T  C  Y  A  I  *  A  *  R  Y  G  S  M  L  I  F  H  K  T  N  G  L  W  S  Q  D  E  K  L  T  K  V  L  H  *  Q  M  L  N  T  P  N  K  Q  S  Y  S  H  A  V  C  Q  M  V  T  L  H  N  *  *  T  F  G  I  I  G  F  Q  I  W  *  L  I  H  S  R  L  Q  I  G  E  W  *  N  L  S  I  L  T  S  L  L  L  L  L  N  C  C  Y  K  K  S  C </first_frame>
            <second_frame>  H  G  F  T  P  D  S  Y  T  Y  S  S  L  I  R  G  L  C  L  E  K  M  L  V  A  A  V  D  V  F  Y  M  M  E  E  N  G  Y  R  P  D  V  D  N  F  N  A  L  V  L  G  L  C  K  S  K  R  T  D  L  S  L  K  V  F  E  D  M  I  S  K  G  Y  M  P  N  E  I  T  Y  T  I  I  V  E  G  I  I  H  E  D  H  K  E  L  A  S  V  V  L  R  E  L  H  R  K  E  V  I  S  R  N  T  V  E  R  L  A  M  Q  Y  E  L  E  D  M  A  V  C  *  S  F  T  K  P  M  A  C  G  H  R  M  R  N  *  Q  R  F  F  I  S  K  C  *  I  H  Q  I  N  K  V  I  L  M  L  Y  V  R  W  *  L  Y  T  T  N  K  P  S  G  *  L  V  F  R  Y  G  S  *  F  I  V  G  F  K  *  V  S  G  E  T  C  Q  F  S  L  A  Y  S  C  Y  S  I  A  V  T  K  K  V   </second_frame>
            <third_frame>   T  D  L  L  Q  T  L  T  P  I  L  H  *  S  E  D  Y  A  W  K  R  C  W  W  L  L  S  M  Y  S  T  *  W  K  K  M  D  I  G  L  M  L  T  I  S  M  R  L  C  L  D  Y  A  N  P  K  E  Q  T  C  H  *  R  Y  L  R  T  *  S  A  K  V  I  C  L  M  R  *  H  I  P  L  *  S  K  A  S  S  M  K  I  T  R  S  L  H  Q  *  S  *  G  N  C  T  G  K  K  *  *  V  E  I  L  L  K  D  L  L  C  N  M  S  L  K  I  W  Q  Y  A  D  L  S  Q  N  Q  W  L  V  V  T  G  *  E  T  N  K  G  S  S  L  A  N  A  K  Y  T  K  *  T  K  L  F  S  C  C  M  S  D  G  N  F  T  Q  L  I  N  L  R  D  N  W  F  S  D  M  V  V  D  S  *  *  A  S  N  R  *  V  V  K  L  V  N  S  H  *  L  T  L  A  T  Q  L  L  L  Q  K  K  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0179K09.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120" stop="509"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HGFTPDSYTYSSLIRGLCLEKMLVAAVDVFYMMEENGYRPDVDNFNALVLGLCKSKRTDLSLKVFEDMISKGYMPNEITYTIIVEGIIHEDHKELASVVLRELHRKEVISRNTVERLAMQYELEDMAVC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="3204" PGL_stop="1537"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3204" e_stop="3147"/>
            <exon e_start="2018" e_stop="1537"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3204" e_stop="3147" e_length="58"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.991">
            <gDNA_intron_boundary i_start="3146" i_stop="2019" i_length="1128"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2018" e_stop="1537" e_length="482"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3204" stop="3147"/>
              <exon start="2018" stop="1643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3203" stop="3147"/>
              <exon start="2018" stop="1643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3202" stop="3147"/>
              <exon start="2018" stop="1635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3202" stop="3147"/>
              <exon start="2018" stop="1698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3199" stop="3147"/>
              <exon start="2018" stop="1605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3199" stop="3147"/>
              <exon start="2018" stop="1666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3198" stop="3147"/>
              <exon start="2018" stop="1643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3187" stop="3147"/>
              <exon start="2018" stop="1779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3166" stop="3147"/>
              <exon start="2018" stop="1537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3166" stop="3147"/>
              <exon start="2018" stop="1537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1877" stop="1643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1876" stop="1643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302688" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGAAGACGAGGTAAAGAGAGAGTCGGCGGTGAATTTTGAGCAAGCATGAGAGCAAAG : TGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTGAATAAATTTTGGCTTTGAACGTTATTACTTCATGTGATGTTCTGATGATGTACAAGTGTGAAGTGAAACCCTGGTTGGTTTTGATCTAGTATGATCATTCTTGTGCTTGCTTGGTTCAAGAATATCAAG</gDNA_template>
            <first_frame> R  K  T  R  *  R  E  S  R  R  *  I  L  S  K  H  E  S  K   : V  E  E  E  A  Y  E  E  T  E  K  E  A  Q  K  D  E  T  E  I  *  V  E  Q  Q  Q  G  S  R  C  L  L  W  F  L  G  *  N  C  C  F  L  *  S  L  S  I  S  V  A  A  P  K  N  G  G  C  P  L  F  E  A  V  H  *  L  I  Y  Y  V  L  W  R  S  L  V  L  V  L  S  I  G  S  K  N  V  G  L  C  W  I  Y  V  S  Y  I  E  C  S  L  S  S  *  R  F  *  E  D  F  Y  L  F  G  V  T  F  H  L  N  K  F  W  L  *  T  L  L  L  H  V  M  F  *  *  C  T  S  V  K  *  N  P  G  W  F  *  S  S  M  I  I  L  V  L  A  W  F  K  N  I  K </first_frame>
            <second_frame>  G  R  R  G  K  E  R  V  G  G  E  F  *  A  S  M  R  A  K  :  W  K  K  K  R  M  R  R  L  K  R  K  R  R  K  M  R  Q  R  S  K  *  S  S  S  R  G  P  D  A  Y  C  G  F  L  V  E  T  A  A  F  Y  N  R  C  P  S  L  W  Q  L  Q  R  M  E  V  V  R  C  L  K  L  C  I  S  *  F  T  M  F  Y  G  G  A  *  F  *  F  *  A  L  V  V  R  M  L  V  C  V  G  Y  M  *  V  I  L  N  V  L  F  Q  A  D  V  F  K  R  I  S  I  C  L  G  L  H  F  I  *  I  N  F  G  F  E  R  Y  Y  F  M  *  C  S  D  D  V  Q  V  *  S  E  T  L  V  G  F  D  L  V  *  S  F  L  C  L  L  G  S  R  I  S   </second_frame>
            <third_frame>   E  D  E  V  K  R  E  S  A  V  N  F  E  Q  A  *  E  Q  S :   G  R  R  S  V  *  G  D  *  K  G  S  A  E  R  *  D  R  D  L  S  R  A  A  A  G  V  Q  M  P  T  V  V  S  W  L  K  L  L  L  F  I  I  A  V  H  L  C  G  S  S  K  E  W  R  L  S  V  V  *  S  C  A  L  V  N  L  L  C  S  M  E  E  L  S  F  S  F  K  H  W  *  *  E  C  W  F  V  L  D  I  C  E  L  Y  *  M  F  S  F  K  L  T  F  L  R  G  F  L  F  V  W  G  Y  I  S  F  E  *  I  L  A  L  N  V  I  T  S  C  D  V  L  M  M  Y  K  C  E  V  K  P  W  L  V  L  I  *  Y  D  H  S  C  A  C  L  V  Q  E  Y  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0179K09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="5080" PGL_stop="8291"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5080" e_stop="5320"/>
            <exon e_start="6619" e_stop="6783"/>
            <exon e_start="7071" e_stop="7128"/>
            <exon e_start="8091" e_stop="8291"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5080" e_stop="5320" e_length="241"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.998">
            <gDNA_intron_boundary i_start="5321" i_stop="6618" i_length="1298"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6619" e_stop="6783" e_length="165"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="6784" i_stop="7070" i_length="287"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7071" e_stop="7128" e_length="58"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.990">
            <gDNA_intron_boundary i_start="7129" i_stop="8090" i_length="962"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="8091" e_stop="8291" e_length="201"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5080" stop="5320"/>
              <exon start="6619" stop="6783"/>
              <exon start="7071" stop="7128"/>
              <exon start="8091" stop="8291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5080" stop="5320"/>
              <exon start="6619" stop="6783"/>
              <exon start="7071" stop="7128"/>
              <exon start="8091" stop="8175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5189" stop="5320"/>
              <exon start="6619" stop="6783"/>
              <exon start="7071" stop="7128"/>
              <exon start="8091" stop="8262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274732" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGACGAGTACCGGGAAATACAATGTCGAACGAAGCCCCAGCAAAACCACCGTGCGACACACCGGAGCATGACTCAGCCGGCGTCAACGGCTTTGACATCAACAACGACACTTCAAGTACTGCCTTAGCAAAGGGCCTTTCCACTATAATATCTTCTCTAATCCGGGAATTTGATGATAGTGCTGCCGCCACCTCTCGTAGTCAAGATCAACTCTCTTCCACCCTCGATCGTCTCACTGGAG : AGCTTGACAAGCTGCTGGAAGATGCCCCATTGCCTTTTATCATGCAGCATGCTGCCAGAATTTCTGGTGTTAGGAAAAGAATTACATCGTTGAACTCACTTTTGAAGTCTATACAGAGGCGTCTTGATAATATCGACCACACATTATCTGCTGGTTTGTTACATG : AGAAGTCCTCAGGGGATGGTGGGCGAGACCATGAGAATCATAAGTCTTCATTGAAGAG : TTCATGATCAAAATCCAGGAGAAGATTCAAATGTCCTTCGCAGTGCCCGTAGAAATCTCCTTCTGATTGCAAGCATTTGGAACTGATTCAGCCTTGTGGTGTAAAAGGTAGTCTGATGCATGAGGTTATAACACACTGCGTTCTGAAAAGATGTTCTTTTACCTGTCAAAAAATTGCATGGTTTCAGCTCTGTGCCATACT</gDNA_template>
            <first_frame> *  R  V  P  G  N  T  M  S  N  E  A  P  A  K  P  P  C  D  T  P  E  H  D  S  A  G  V  N  G  F  D  I  N  N  D  T  S  S  T  A  L  A  K  G  L  S  T  I  I  S  S  L  I  R  E  F  D  D  S  A  A  A  T  S  R  S  Q  D  Q  L  S  S  T  L  D  R  L  T  G   : E  L  D  K  L  L  E  D  A  P  L  P  F  I  M  Q  H  A  A  R  I  S  G  V  R  K  R  I  T  S  L  N  S  L  L  K  S  I  Q  R  R  L  D  N  I  D  H  T  L  S  A  G  L  L  H   : E  K  S  S  G  D  G  G  R  D  H  E  N  H  K  S  S  L  K  S :   S  *  S  K  S  R  R  R  F  K  C  P  S  Q  C  P  *  K  S  P  S  D  C  K  H  L  E  L  I  Q  P  C  G  V  K  G  S  L  M  H  E  V  I  T  H  C  V  L  K  R  C  S  F  T  C  Q  K  I  A  W  F  Q  L  C  A  I   </first_frame>
            <second_frame>  D  E  Y  R  E  I  Q  C  R  T  K  P  Q  Q  N  H  R  A  T  H  R  S  M  T  Q  P  A  S  T  A  L  T  S  T  T  T  L  Q  V  L  P  *  Q  R  A  F  P  L  *  Y  L  L  *  S  G  N  L  M  I  V  L  P  P  P  L  V  V  K  I  N  S  L  P  P  S  I  V  S  L  E  :  S  L  T  S  C  W  K  M  P  H  C  L  L  S  C  S  M  L  P  E  F  L  V  L  G  K  E  L  H  R  *  T  H  F  *  S  L  Y  R  G  V  L  I  I  S  T  T  H  Y  L  L  V  C  Y  M  :  R  S  P  Q  G  M  V  G  E  T  M  R  I  I  S  L  H  *  R   : V  H  D  Q  N  P  G  E  D  S  N  V  L  R  S  A  R  R  N  L  L  L  I  A  S  I  W  N  *  F  S  L  V  V  *  K  V  V  *  C  M  R  L  *  H  T  A  F  *  K  D  V  L  L  P  V  K  K  L  H  G  F  S  S  V  P  Y  </second_frame>
            <third_frame>   T  S  T  G  K  Y  N  V  E  R  S  P  S  K  T  T  V  R  H  T  G  A  *  L  S  R  R  Q  R  L  *  H  Q  Q  R  H  F  K  Y  C  L  S  K  G  P  F  H  Y  N  I  F  S  N  P  G  I  *  *  *  C  C  R  H  L  S  *  S  R  S  T  L  F  H  P  R  S  S  H  W  R :   A  *  Q  A  A  G  R  C  P  I  A  F  Y  H  A  A  C  C  Q  N  F  W  C  *  E  K  N  Y  I  V  E  L  T  F  E  V  Y  T  E  A  S  *  *  Y  R  P  H  I  I  C  W  F  V  T  * :   E  V  L  R  G  W  W  A  R  P  *  E  S  *  V  F  I  E  E  :  F  M  I  K  I  Q  E  K  I  Q  M  S  F  A  V  P  V  E  I  S  F  *  L  Q  A  F  G  T  D  S  A  L  W  C  K  R  *  S  D  A  *  G  Y  N  T  L  R  S  E  K  M  F  F  Y  L  S  K  N  C  M  V  S  A  L  C  H  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0179K09.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5083" stop="5320"/>
                    <exon start="6619" stop="6783"/>
                    <exon start="7071" stop="7128"/>
                    <exon start="8091" stop="8097"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVPGNTMSNEAPAKPPCDTPEHDSAGVNGFDINNDTSSTALAKGLSTIISSLIREFDDSAAATSRSQDQLSSTLDRLTGELDKLLEDAPLPFIMQHAARISGVRKRITSLNSLLKSIQRRLDNIDHTLSAGLLHEKSSGDGGRDHENHKSSLKSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="5092" e_stop="5320"/>
            <exon e_start="5741" e_stop="5966"/>
            <exon e_start="6019" e_stop="6039"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.437" e_score="0.996"/>
          <exon-intron don_prob="0.000" acc_prob="0.484" e_score="1.000"/>
          <exon-only e_score="0.762"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="5092" e_stop="5320" e_length="229"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.437">
            <gDNA_intron_boundary i_start="5321" i_stop="5740" i_length="420"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5741" e_stop="5966" e_length="226"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.484">
            <gDNA_intron_boundary i_start="5967" i_stop="6018" i_length="52"/>
          </intron>
          <exon e_serial="3" e_score="0.762">
            <gDNA_exon_boundary e_start="6019" e_stop="6039" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5092" stop="5320"/>
              <exon start="5741" stop="5966"/>
              <exon start="6019" stop="6039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716656" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAAATACAATGTCGAACGAAGCCCCAGCAAAACCACCGTGCGACACACCGGAGCATGACTCAGCCGGCGTCAACGGCTTTGACATCAACAACGACACTTCAAGTACTGCCTTAGCAAAGGGCCTTTCCACTATAATATCTTCTCTAATCCGGGAATTTGATGATAGTGCTGCCGCCACCTCTCGTAGTCAAGATCAACTCTCTTCCACCCTCGATCGTCTCACTGGAG : GCTTACCCAAACAGATGTGGTTGCAATGTATCAAGTTGTTCAATGGATTGGTCGAGATGAGCATAAGATGCCGTCACACCATTGTCATGTTAGAGAAATCACCAGGGTTGGGGCGTGTGTGTGTGCTGGGAGGCAATAGCTGTATATGTAATTTTGTTTGCACCTTCTAGTTTCATTTGCAGCTCACCATTGTTTCCTTGAGAATGAATACAATCACTTTCTTCTT : CTAAAGGAGAAAAAAAAAAGA</gDNA_template>
            <first_frame> G  N  T  M  S  N  E  A  P  A  K  P  P  C  D  T  P  E  H  D  S  A  G  V  N  G  F  D  I  N  N  D  T  S  S  T  A  L  A  K  G  L  S  T  I  I  S  S  L  I  R  E  F  D  D  S  A  A  A  T  S  R  S  Q  D  Q  L  S  S  T  L  D  R  L  T  G   : G  L  P  K  Q  M  W  L  Q  C  I  K  L  F  N  G  L  V  E  M  S  I  R  C  R  H  T  I  V  M  L  E  K  S  P  G  L  G  R  V  C  V  L  G  G  N  S  C  I  C  N  F  V  C  T  F  *  F  H  L  Q  L  T  I  V  S  L  R  M  N  T  I  T  F  F  F :   *  R  R  K  K  K   </first_frame>
            <second_frame>  E  I  Q  C  R  T  K  P  Q  Q  N  H  R  A  T  H  R  S  M  T  Q  P  A  S  T  A  L  T  S  T  T  T  L  Q  V  L  P  *  Q  R  A  F  P  L  *  Y  L  L  *  S  G  N  L  M  I  V  L  P  P  P  L  V  V  K  I  N  S  L  P  P  S  I  V  S  L  E  :  A  Y  P  N  R  C  G  C  N  V  S  S  C  S  M  D  W  S  R  *  A  *  D  A  V  T  P  L  S  C  *  R  N  H  Q  G  W  G  V  C  V  C  W  E  A  I  A  V  Y  V  I  L  F  A  P  S  S  F  I  C  S  S  P  L  F  P  *  E  *  I  Q  S  L  S  S   : S  K  G  E  K  K  K  </second_frame>
            <third_frame>   K  Y  N  V  E  R  S  P  S  K  T  T  V  R  H  T  G  A  *  L  S  R  R  Q  R  L  *  H  Q  Q  R  H  F  K  Y  C  L  S  K  G  P  F  H  Y  N  I  F  S  N  P  G  I  *  *  *  C  C  R  H  L  S  *  S  R  S  T  L  F  H  P  R  S  S  H  W  R :   L  T  Q  T  D  V  V  A  M  Y  Q  V  V  Q  W  I  G  R  D  E  H  K  M  P  S  H  H  C  H  V  R  E  I  T  R  V  G  A  C  V  C  A  G  R  Q  *  L  Y  M  *  F  C  L  H  L  L  V  S  F  A  A  H  H  C  F  L  E  N  E  Y  N  H  F  L  L  :  L  K  E  K  K  K  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0179K09.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5092" stop="5320"/>
                    <exon start="5741" stop="5910"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>396</number_coding_nucleotides>
                  <number_encoded_amino_acids>132</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GNTMSNEAPAKPPCDTPEHDSAGVNGFDINNDTSSTALAKGLSTIISSLIREFDDSAAATSRSQDQLSSTLDRLTGGLPKQMWLQCIKLFNGLVEMSIRCRHTIVMLEKSPGLGRVCVLGGNSCICNFVCTF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="12636" PGL_stop="12990"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12636" e_stop="12990"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="12636" e_stop="12990" e_length="355"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12636" stop="12990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268758" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTTTCTTTTTATATATATATATATTCCATTCTGTAATCGTTACGTTAACGTTTCTTCTATTTGTATGTACGCCGGAAATTATGGCTTCAGCTTGCGTTAACAAAATGGGTATGTCGCCGGAGAAGTTTTTGGATTGTTCTCCGGCTGCGAAGTACAAGTCATATGGTTGGTTAAGTCCAAGGATGTCATTTAGTAGGGACGGCGAAGCTTCCAAGGTTGCCGGAGCTAAGCAGACGAGTGTTGAAAATGATAAGGTGGAGGAATTAGATCCAGAAGTTTCGAAAGATATGGGCGATTTTGAGTTTTGCCTTGAAGATCCGGTAAATATGCTGCCAGCTGATGAGCTTTTTTTC</gDNA_template>
            <first_frame> L  F  L  F  I  Y  I  Y  I  P  F  C  N  R  Y  V  N  V  S  S  I  C  M  Y  A  G  N  Y  G  F  S  L  R  *  Q  N  G  Y  V  A  G  E  V  F  G  L  F  S  G  C  E  V  Q  V  I  W  L  V  K  S  K  D  V  I  *  *  G  R  R  S  F  Q  G  C  R  S  *  A  D  E  C  *  K  *  *  G  G  G  I  R  S  R  S  F  E  R  Y  G  R  F  *  V  L  P  *  R  S  G  K  Y  A  A  S  *  *  A  F  F  </first_frame>
            <second_frame>  S  F  F  L  Y  I  Y  I  F  H  S  V  I  V  T  L  T  F  L  L  F  V  C  T  P  E  I  M  A  S  A  C  V  N  K  M  G  M  S  P  E  K  F  L  D  C  S  P  A  A  K  Y  K  S  Y  G  W  L  S  P  R  M  S  F  S  R  D  G  E  A  S  K  V  A  G  A  K  Q  T  S  V  E  N  D  K  V  E  E  L  D  P  E  V  S  K  D  M  G  D  F  E  F  C  L  E  D  P  V  N  M  L  P  A  D  E  L  F  F </second_frame>
            <third_frame>   L  S  F  Y  I  Y  I  Y  S  I  L  *  S  L  R  *  R  F  F  Y  L  Y  V  R  R  K  L  W  L  Q  L  A  L  T  K  W  V  C  R  R  R  S  F  W  I  V  L  R  L  R  S  T  S  H  M  V  G  *  V  Q  G  C  H  L  V  G  T  A  K  L  P  R  L  P  E  L  S  R  R  V  L  K  M  I  R  W  R  N  *  I  Q  K  F  R  K  I  W  A  I  L  S  F  A  L  K  I  R  *  I  C  C  Q  L  M  S  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0179K09.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12637" stop="12990"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFLYIYIFHSVIVTLTFLLFVCTPEIMASACVNKMGMSPEKFLDCSPAAKYKSYGWLSPRMSFSRDGEASKVAGAKQTSVENDKVEELDPEVSKDMGDFEFCLEDPVNMLPADELFF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="20276" PGL_stop="24057"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20314" e_stop="20629"/>
            <exon e_start="20757" e_stop="20852"/>
            <exon e_start="21388" e_stop="21468"/>
            <exon e_start="21739" e_stop="21813"/>
            <exon e_start="22282" e_stop="22362"/>
            <exon e_start="23177" e_stop="23316"/>
            <exon e_start="23999" e_stop="24057"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.968" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.655" acc_prob="0.928" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.929" e_score="1.000"/>
          <exon-intron don_prob="0.888" acc_prob="0.942" e_score="0.950"/>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20314" e_stop="20629" e_length="316"/>
          </exon>
          <intron i_serial="1" don_prob="0.968" acc_prob="0.958">
            <gDNA_intron_boundary i_start="20630" i_stop="20756" i_length="127"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20757" e_stop="20852" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.981">
            <gDNA_intron_boundary i_start="20853" i_stop="21387" i_length="535"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="21388" e_stop="21468" e_length="81"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.980">
            <gDNA_intron_boundary i_start="21469" i_stop="21738" i_length="270"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="21739" e_stop="21813" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.655" acc_prob="0.928">
            <gDNA_intron_boundary i_start="21814" i_stop="22281" i_length="468"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="22282" e_stop="22362" e_length="81"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.929">
            <gDNA_intron_boundary i_start="22363" i_stop="23176" i_length="814"/>
          </intron>
          <exon e_serial="6" e_score="0.950">
            <gDNA_exon_boundary e_start="23177" e_stop="23316" e_length="140"/>
          </exon>
          <intron i_serial="6" don_prob="0.888" acc_prob="0.942">
            <gDNA_intron_boundary i_start="23317" i_stop="23998" i_length="682"/>
          </intron>
          <exon e_serial="7" e_score="0.932">
            <gDNA_exon_boundary e_start="23999" e_stop="24057" e_length="59"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20314" stop="20629"/>
              <exon start="20757" stop="20852"/>
              <exon start="21388" stop="21468"/>
              <exon start="21739" stop="21813"/>
              <exon start="22282" stop="22334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20488" stop="20629"/>
              <exon start="20757" stop="20852"/>
              <exon start="21388" stop="21468"/>
              <exon start="21739" stop="21813"/>
              <exon start="22282" stop="22362"/>
              <exon start="23177" stop="23316"/>
              <exon start="23999" stop="24057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20488" stop="20629"/>
              <exon start="20757" stop="20852"/>
              <exon start="21388" stop="21468"/>
              <exon start="21739" stop="21813"/>
              <exon start="22282" stop="22362"/>
              <exon start="23177" stop="23207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445840" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACGGTAAAACCCAGAATCGACAAAACAATGGTTAATGAGTATACATTCTGTTTTGGAGTAGTGGTTAGCATATTGCATTGTTAGACTGTCTATGTCACTTCTCAGTTGCTTGATACTTATGGAAATGCATATTTTATTACATTTAAGTTGTTTTTCACCTTGTTCTCTGTTAGTGCAAATCTTCCCTCCATGGCTGAAGAGTTCAAGTATTCTTGCAACACTGCCAGTGAAACCCTAGAATGGATCCATGCAATTATCAACTTCATTGCACCTTATCGTTATTTTATAGATGCTCATGTCGTCAACTTTTTCAAG : GATAGACTATGGGAAGCTGTGGATAAAGAATGGATGGATTGTTTACAGAAGGAGTCGGTTGAAAATCTTCTCCGGATTCCTTCTGGTGTGGTTCAG : GATCACTGGCCTGGCTCACTTAAAGACTTCATACTTACTCTGAGGTCTCTTTGTCTTTCACGTGAACAGGCTGATTTTCAG : GAATTTTCAGGAATGCACATAGCTTCACTAAGTAATGTTTTAGCTCAAGGCATGAATCATAAGAAAAAGCATGAA : GTGGAAGTACTTTCTGCTCTGGTCAGCTTAGTCGCAAAGCAAGTTGGTGCCCGAACAATTGTTGATGTTGGTGCTGGACAG : GGTTATCTTGCACAAGTGCTTGCTTTTGACTACCAGCTTTCGGTAATTGCTATTGATGCTTGTTCACATCATGGCAAGATTACTGATGCACGTGCAGAGCGAATCAGGAAACACTATGCAGCTAAGATGCGTAAAAATTG : CTCTGAACCGAGAGAGCTTAGTGTGCCAAAGACAGTTACATGCCGAGTGCTGTCTACTG</gDNA_template>
            <first_frame> N  G  K  T  Q  N  R  Q  N  N  G  *  *  V  Y  I  L  F  W  S  S  G  *  H  I  A  L  L  D  C  L  C  H  F  S  V  A  *  Y  L  W  K  C  I  F  Y  Y  I  *  V  V  F  H  L  V  L  C  *  C  K  S  S  L  H  G  *  R  V  Q  V  F  L  Q  H  C  Q  *  N  P  R  M  D  P  C  N  Y  Q  L  H  C  T  L  S  L  F  Y  R  C  S  C  R  Q  L  F  Q   : G  *  T  M  G  S  C  G  *  R  M  D  G  L  F  T  E  G  V  G  *  K  S  S  P  D  S  F  W  C  G  S   : G  S  L  A  W  L  T  *  R  L  H  T  Y  S  E  V  S  L  S  F  T  *  T  G  *  F  S   : G  I  F  R  N  A  H  S  F  T  K  *  C  F  S  S  R  H  E  S  *  E  K  A  *   : S  G  S  T  F  C  S  G  Q  L  S  R  K  A  S  W  C  P  N  N  C  *  C  W  C  W  T   : G  L  S  C  T  S  A  C  F  *  L  P  A  F  G  N  C  Y  *  C  L  F  T  S  W  Q  D  Y  *  C  T  C  R  A  N  Q  E  T  L  C  S  *  D  A  *  K  L  :  L  *  T  E  R  A  *  C  A  K  D  S  Y  M  P  S  A  V  Y   </first_frame>
            <second_frame>  T  V  K  P  R  I  D  K  T  M  V  N  E  Y  T  F  C  F  G  V  V  V  S  I  L  H  C  *  T  V  Y  V  T  S  Q  L  L  D  T  Y  G  N  A  Y  F  I  T  F  K  L  F  F  T  L  F  S  V  S  A  N  L  P  S  M  A  E  E  F  K  Y  S  C  N  T  A  S  E  T  L  E  W  I  H  A  I  I  N  F  I  A  P  Y  R  Y  F  I  D  A  H  V  V  N  F  F  K  :  D  R  L  W  E  A  V  D  K  E  W  M  D  C  L  Q  K  E  S  V  E  N  L  L  R  I  P  S  G  V  V  Q  :  D  H  W  P  G  S  L  K  D  F  I  L  T  L  R  S  L  C  L  S  R  E  Q  A  D  F  Q  :  E  F  S  G  M  H  I  A  S  L  S  N  V  L  A  Q  G  M  N  H  K  K  K  H  E  :  V  E  V  L  S  A  L  V  S  L  V  A  K  Q  V  G  A  R  T  I  V  D  V  G  A  G  Q  :  G  Y  L  A  Q  V  L  A  F  D  Y  Q  L  S  V  I  A  I  D  A  C  S  H  H  G  K  I  T  D  A  R  A  E  R  I  R  K  H  Y  A  A  K  M  R  K  N  C :   S  E  P  R  E  L  S  V  P  K  T  V  T  C  R  V  L  S  T  </second_frame>
            <third_frame>   R  *  N  P  E  S  T  K  Q  W  L  M  S  I  H  S  V  L  E  *  W  L  A  Y  C  I  V  R  L  S  M  S  L  L  S  C  L  I  L  M  E  M  H  I  L  L  H  L  S  C  F  S  P  C  S  L  L  V  Q  I  F  P  P  W  L  K  S  S  S  I  L  A  T  L  P  V  K  P  *  N  G  S  M  Q  L  S  T  S  L  H  L  I  V  I  L  *  M  L  M  S  S  T  F  S  R :   I  D  Y  G  K  L  W  I  K  N  G  W  I  V  Y  R  R  S  R  L  K  I  F  S  G  F  L  L  V  W  F  R :   I  T  G  L  A  H  L  K  T  S  Y  L  L  *  G  L  F  V  F  H  V  N  R  L  I  F  R :   N  F  Q  E  C  T  *  L  H  *  V  M  F  *  L  K  A  *  I  I  R  K  S  M  K :   W  K  Y  F  L  L  W  S  A  *  S  Q  S  K  L  V  P  E  Q  L  L  M  L  V  L  D  R :   V  I  L  H  K  C  L  L  L  T  T  S  F  R  *  L  L  L  M  L  V  H  I  M  A  R  L  L  M  H  V  Q  S  E  S  G  N  T  M  Q  L  R  C  V  K  I   : A  L  N  R  E  S  L  V  C  Q  R  Q  L  H  A  E  C  C  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0179K09.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20399" stop="20629"/>
                    <exon start="20757" stop="20852"/>
                    <exon start="21388" stop="21468"/>
                    <exon start="21739" stop="21813"/>
                    <exon start="22282" stop="22362"/>
                    <exon start="23177" stop="23316"/>
                    <exon start="23999" stop="24056"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>762</number_coding_nucleotides>
                  <number_encoded_amino_acids>254</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TVYVTSQLLDTYGNAYFITFKLFFTLFSVSANLPSMAEEFKYSCNTASETLEWIHAIINFIAPYRYFIDAHVVNFFKDRLWEAVDKEWMDCLQKESVENLLRIPSGVVQDHWPGSLKDFILTLRSLCLSREQADFQEFSGMHIASLSNVLAQGMNHKKKHEVEVLSALVSLVAKQVGARTIVDVGAGQGYLAQVLAFDYQLSVIAIDACSHHGKITDARAERIRKHYAAKMRKNCSEPRELSVPKTVTCRVLST</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="20276" e_stop="20317"/>
            <exon e_start="20488" e_stop="20629"/>
            <exon e_start="20757" e_stop="20852"/>
            <exon e_start="21388" e_stop="21468"/>
            <exon e_start="21739" e_stop="21813"/>
            <exon e_start="22282" e_stop="22362"/>
            <exon e_start="23177" e_stop="23316"/>
            <exon e_start="23999" e_stop="24057"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.928" acc_prob="0.823" e_score="0.929"/>
          <exon-intron don_prob="0.968" acc_prob="0.958" e_score="0.965"/>
          <exon-intron don_prob="0.996" acc_prob="0.981" e_score="0.969"/>
          <exon-intron don_prob="0.999" acc_prob="0.980" e_score="0.988"/>
          <exon-intron don_prob="0.655" acc_prob="0.928" e_score="0.987"/>
          <exon-intron don_prob="0.999" acc_prob="0.929" e_score="0.938"/>
          <exon-intron don_prob="0.888" acc_prob="0.942" e_score="0.950"/>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="20276" e_stop="20317" e_length="42"/>
          </exon>
          <intron i_serial="1" don_prob="0.928" acc_prob="0.823">
            <gDNA_intron_boundary i_start="20318" i_stop="20487" i_length="170"/>
          </intron>
          <exon e_serial="2" e_score="0.965">
            <gDNA_exon_boundary e_start="20488" e_stop="20629" e_length="142"/>
          </exon>
          <intron i_serial="2" don_prob="0.968" acc_prob="0.958">
            <gDNA_intron_boundary i_start="20630" i_stop="20756" i_length="127"/>
          </intron>
          <exon e_serial="3" e_score="0.969">
            <gDNA_exon_boundary e_start="20757" e_stop="20852" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.981">
            <gDNA_intron_boundary i_start="20853" i_stop="21387" i_length="535"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="21388" e_stop="21468" e_length="81"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.980">
            <gDNA_intron_boundary i_start="21469" i_stop="21738" i_length="270"/>
          </intron>
          <exon e_serial="5" e_score="0.987">
            <gDNA_exon_boundary e_start="21739" e_stop="21813" e_length="75"/>
          </exon>
          <intron i_serial="5" don_prob="0.655" acc_prob="0.928">
            <gDNA_intron_boundary i_start="21814" i_stop="22281" i_length="468"/>
          </intron>
          <exon e_serial="6" e_score="0.938">
            <gDNA_exon_boundary e_start="22282" e_stop="22362" e_length="81"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.929">
            <gDNA_intron_boundary i_start="22363" i_stop="23176" i_length="814"/>
          </intron>
          <exon e_serial="7" e_score="0.950">
            <gDNA_exon_boundary e_start="23177" e_stop="23316" e_length="140"/>
          </exon>
          <intron i_serial="7" don_prob="0.888" acc_prob="0.942">
            <gDNA_intron_boundary i_start="23317" i_stop="23998" i_length="682"/>
          </intron>
          <exon e_serial="8" e_score="0.932">
            <gDNA_exon_boundary e_start="23999" e_stop="24057" e_length="59"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20276" stop="20317"/>
              <exon start="20488" stop="20629"/>
              <exon start="20757" stop="20852"/>
              <exon start="21388" stop="21468"/>
              <exon start="21739" stop="21813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20488" stop="20629"/>
              <exon start="20757" stop="20852"/>
              <exon start="21388" stop="21468"/>
              <exon start="21739" stop="21813"/>
              <exon start="22282" stop="22362"/>
              <exon start="23177" stop="23316"/>
              <exon start="23999" stop="24057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20488" stop="20629"/>
              <exon start="20757" stop="20852"/>
              <exon start="21388" stop="21468"/>
              <exon start="21739" stop="21813"/>
              <exon start="22282" stop="22362"/>
              <exon start="23177" stop="23207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445840" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTCAGCCCAATTCTCTTCTTCCACAAAGAAGCTAGCAACG : TGCAAATCTTCCCTCCATGGCTGAAGAGTTCAAGTATTCTTGCAACACTGCCAGTGAAACCCTAGAATGGATCCATGCAATTATCAACTTCATTGCACCTTATCGTTATTTTATAGATGCTCATGTCGTCAACTTTTTCAAG : GATAGACTATGGGAAGCTGTGGATAAAGAATGGATGGATTGTTTACAGAAGGAGTCGGTTGAAAATCTTCTCCGGATTCCTTCTGGTGTGGTTCAG : GATCACTGGCCTGGCTCACTTAAAGACTTCATACTTACTCTGAGGTCTCTTTGTCTTTCACGTGAACAGGCTGATTTTCAG : GAATTTTCAGGAATGCACATAGCTTCACTAAGTAATGTTTTAGCTCAAGGCATGAATCATAAGAAAAAGCATGAA : GTGGAAGTACTTTCTGCTCTGGTCAGCTTAGTCGCAAAGCAAGTTGGTGCCCGAACAATTGTTGATGTTGGTGCTGGACAG : GGTTATCTTGCACAAGTGCTTGCTTTTGACTACCAGCTTTCGGTAATTGCTATTGATGCTTGTTCACATCATGGCAAGATTACTGATGCACGTGCAGAGCGAATCAGGAAACACTATGCAGCTAAGATGCGTAAAAATTG : CTCTGAACCGAGAGAGCTTAGTGTGCCAAAGACAGTTACATGCCGAGTGCTGTCTACTG</gDNA_template>
            <first_frame> I  S  A  Q  F  S  S  S  T  K  K  L  A  T  :  C  K  S  S  L  H  G  *  R  V  Q  V  F  L  Q  H  C  Q  *  N  P  R  M  D  P  C  N  Y  Q  L  H  C  T  L  S  L  F  Y  R  C  S  C  R  Q  L  F  Q   : G  *  T  M  G  S  C  G  *  R  M  D  G  L  F  T  E  G  V  G  *  K  S  S  P  D  S  F  W  C  G  S   : G  S  L  A  W  L  T  *  R  L  H  T  Y  S  E  V  S  L  S  F  T  *  T  G  *  F  S   : G  I  F  R  N  A  H  S  F  T  K  *  C  F  S  S  R  H  E  S  *  E  K  A  *   : S  G  S  T  F  C  S  G  Q  L  S  R  K  A  S  W  C  P  N  N  C  *  C  W  C  W  T   : G  L  S  C  T  S  A  C  F  *  L  P  A  F  G  N  C  Y  *  C  L  F  T  S  W  Q  D  Y  *  C  T  C  R  A  N  Q  E  T  L  C  S  *  D  A  *  K  L  :  L  *  T  E  R  A  *  C  A  K  D  S  Y  M  P  S  A  V  Y   </first_frame>
            <second_frame>  F  Q  P  N  S  L  L  P  Q  R  S  *  Q  R :   A  N  L  P  S  M  A  E  E  F  K  Y  S  C  N  T  A  S  E  T  L  E  W  I  H  A  I  I  N  F  I  A  P  Y  R  Y  F  I  D  A  H  V  V  N  F  F  K  :  D  R  L  W  E  A  V  D  K  E  W  M  D  C  L  Q  K  E  S  V  E  N  L  L  R  I  P  S  G  V  V  Q  :  D  H  W  P  G  S  L  K  D  F  I  L  T  L  R  S  L  C  L  S  R  E  Q  A  D  F  Q  :  E  F  S  G  M  H  I  A  S  L  S  N  V  L  A  Q  G  M  N  H  K  K  K  H  E  :  V  E  V  L  S  A  L  V  S  L  V  A  K  Q  V  G  A  R  T  I  V  D  V  G  A  G  Q  :  G  Y  L  A  Q  V  L  A  F  D  Y  Q  L  S  V  I  A  I  D  A  C  S  H  H  G  K  I  T  D  A  R  A  E  R  I  R  K  H  Y  A  A  K  M  R  K  N  C :   S  E  P  R  E  L  S  V  P  K  T  V  T  C  R  V  L  S  T  </second_frame>
            <third_frame>   F  S  P  I  L  F  F  H  K  E  A  S  N   : V  Q  I  F  P  P  W  L  K  S  S  S  I  L  A  T  L  P  V  K  P  *  N  G  S  M  Q  L  S  T  S  L  H  L  I  V  I  L  *  M  L  M  S  S  T  F  S  R :   I  D  Y  G  K  L  W  I  K  N  G  W  I  V  Y  R  R  S  R  L  K  I  F  S  G  F  L  L  V  W  F  R :   I  T  G  L  A  H  L  K  T  S  Y  L  L  *  G  L  F  V  F  H  V  N  R  L  I  F  R :   N  F  Q  E  C  T  *  L  H  *  V  M  F  *  L  K  A  *  I  I  R  K  S  M  K :   W  K  Y  F  L  L  W  S  A  *  S  Q  S  K  L  V  P  E  Q  L  L  M  L  V  L  D  R :   V  I  L  H  K  C  L  L  L  T  T  S  F  R  *  L  L  L  M  L  V  H  I  M  A  R  L  L  M  H  V  Q  S  E  S  G  N  T  M  Q  L  R  C  V  K  I   : A  L  N  R  E  S  L  V  C  Q  R  Q  L  H  A  E  C  C  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0179K09.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20313" stop="20317"/>
                    <exon start="20488" stop="20629"/>
                    <exon start="20757" stop="20852"/>
                    <exon start="21388" stop="21468"/>
                    <exon start="21739" stop="21813"/>
                    <exon start="22282" stop="22362"/>
                    <exon start="23177" stop="23316"/>
                    <exon start="23999" stop="24056"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>678</number_coding_nucleotides>
                  <number_encoded_amino_acids>226</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QRANLPSMAEEFKYSCNTASETLEWIHAIINFIAPYRYFIDAHVVNFFKDRLWEAVDKEWMDCLQKESVENLLRIPSGVVQDHWPGSLKDFILTLRSLCLSREQADFQEFSGMHIASLSNVLAQGMNHKKKHEVEVLSALVSLVAKQVGARTIVDVGAGQGYLAQVLAFDYQLSVIAIDACSHHGKITDARAERIRKHYAAKMRKNCSEPRELSVPKTVTCRVLST</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="25203" PGL_stop="27658"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25686" e_stop="25828"/>
            <exon e_start="26550" e_stop="27358"/>
            <exon e_start="27630" e_stop="27658"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.241" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.322" e_score="0.966"/>
          <exon-only e_score="0.448"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25686" e_stop="25828" e_length="143"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.241">
            <gDNA_intron_boundary i_start="25829" i_stop="26549" i_length="721"/>
          </intron>
          <exon e_serial="2" e_score="0.966">
            <gDNA_exon_boundary e_start="26550" e_stop="27358" e_length="809"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.322">
            <gDNA_intron_boundary i_start="27359" i_stop="27629" i_length="271"/>
          </intron>
          <exon e_serial="3" e_score="0.448">
            <gDNA_exon_boundary e_start="27630" e_stop="27658" e_length="29"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25686" stop="25828"/>
              <exon start="26550" stop="27096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25686" stop="25828"/>
              <exon start="26550" stop="26889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25699" stop="25828"/>
              <exon start="26550" stop="26880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26749" stop="27358"/>
              <exon start="27630" stop="27658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGTTCTAATAGCGAGTCTAACGCTGTGGACAGATGCTCACTATTTGCAAAATTTTGCGAGTCTGGGTTAGGTCGTTTACATCTCCCTCATTTGGCGGATACAGCTTACAGTGCAATCTGGAGGGAGTCTGAATCATACGCT : GAGTTAATAGGACCTTATTGGTCTCTTCGTGCTGCCCTGGGCCCCGTTTTGGAAACTCTTATACTGCTTGACCGATTGTTGCTCCTCCAGGAGTATGGCAGTGATCTGGAGGCAAGCCTCTTACCTATTTTTAATCCTGTGTTATCTCCGAGGAATATGGCTATCATAGCTAGGAAAATTAGAAAGTAGAAAATTTTCTACAGTCTCTAAAAATGTGATTCAACATACTGTGTTGCTATGATTTGTTCTCAGATATTTTGACCGCTTCTGTGTTATCCTTTTTTTAATAAATCTTCCTTAACCAAGAGAAAAAATGTCAGAAGAAAGGAAGCAATTTGCGACCAGGAACAAGCTATATTATTACAGATGTCTTTTTAACCAGAAAAAGAAGAACAGAAGAAACAGGAAAAATTTTGCAACCAGGACCTAGCTTTGTACATGGTCCAAGCAAAAAATGAAGCTCTAGTGGTGAAATGGTATTATATTTATTTATCTATAGATGATATTTGGTTTGCAAGGTGTCTCTTTACACATTTGATCTCAAGTTTATATACTGCTGTCTTTTCTCAAGGTGAGAAGACAAGCCCAAGAATGAGAATGTGGTTATCAATTGAAATATATATCCAACCTATTGCTAATTTAAATGTTGGTTTCACATTCTGACTACTCAGGGTTCTTATGATTATGATATTGTCCTTTATTCACTTTGGGATGTAATGTCATGAGAAATTGTCCTTTTTAATATATAAGTTGTGGAGGGTTGTGTCCACTGTCCTATGAAGTATTCAAGGACAATAGACAAATGACAG : GAGAGAATGACTTGCAAAATCTTTAAAGA</gDNA_template>
            <first_frame> R  V  L  I  A  S  L  T  L  W  T  D  A  H  Y  L  Q  N  F  A  S  L  G  *  V  V  Y  I  S  L  I  W  R  I  Q  L  T  V  Q  S  G  G  S  L  N  H  T  L :   S  *  *  D  L  I  G  L  F  V  L  P  W  A  P  F  W  K  L  L  Y  C  L  T  D  C  C  S  S  R  S  M  A  V  I  W  R  Q  A  S  Y  L  F  L  I  L  C  Y  L  R  G  I  W  L  S  *  L  G  K  L  E  S  R  K  F  S  T  V  S  K  N  V  I  Q  H  T  V  L  L  *  F  V  L  R  Y  F  D  R  F  C  V  I  L  F  L  I  N  L  P  *  P  R  E  K  M  S  E  E  R  K  Q  F  A  T  R  N  K  L  Y  Y  Y  R  C  L  F  N  Q  K  K  K  N  R  R  N  R  K  N  F  A  T  R  T  *  L  C  T  W  S  K  Q  K  M  K  L  *  W  *  N  G  I  I  F  I  Y  L  *  M  I  F  G  L  Q  G  V  S  L  H  I  *  S  Q  V  Y  I  L  L  S  F  L  K  V  R  R  Q  A  Q  E  *  E  C  G  Y  Q  L  K  Y  I  S  N  L  L  L  I  *  M  L  V  S  H  S  D  Y  S  G  F  L  *  L  *  Y  C  P  L  F  T  L  G  C  N  V  M  R  N  C  P  F  *  Y  I  S  C  G  G  L  C  P  L  S  Y  E  V  F  K  D  N  R  Q  M  T   : G  E  N  D  L  Q  N  L  *  R </first_frame>
            <second_frame>  E  F  *  *  R  V  *  R  C  G  Q  M  L  T  I  C  K  I  L  R  V  W  V  R  S  F  T  S  P  S  F  G  G  Y  S  L  Q  C  N  L  E  G  V  *  I  I  R   : *  V  N  R  T  L  L  V  S  S  C  C  P  G  P  R  F  G  N  S  Y  T  A  *  P  I  V  A  P  P  G  V  W  Q  *  S  G  G  K  P  L  T  Y  F  *  S  C  V  I  S  E  E  Y  G  Y  H  S  *  E  N  *  K  V  E  N  F  L  Q  S  L  K  M  *  F  N  I  L  C  C  Y  D  L  F  S  D  I  L  T  A  S  V  L  S  F  F  *  *  I  F  L  N  Q  E  K  K  C  Q  K  K  G  S  N  L  R  P  G  T  S  Y  I  I  T  D  V  F  L  T  R  K  R  R  T  E  E  T  G  K  I  L  Q  P  G  P  S  F  V  H  G  P  S  K  K  *  S  S  S  G  E  M  V  L  Y  L  F  I  Y  R  *  Y  L  V  C  K  V  S  L  Y  T  F  D  L  K  F  I  Y  C  C  L  F  S  R  *  E  D  K  P  K  N  E  N  V  V  I  N  *  N  I  Y  P  T  Y  C  *  F  K  C  W  F  H  I  L  T  T  Q  G  S  Y  D  Y  D  I  V  L  Y  S  L  W  D  V  M  S  *  E  I  V  L  F  N  I  *  V  V  E  G  C  V  H  C  P  M  K  Y  S  R  T  I  D  K  *  Q  :  E  R  M  T  C  K  I  F  K   </second_frame>
            <third_frame>   S  S  N  S  E  S  N  A  V  D  R  C  S  L  F  A  K  F  C  E  S  G  L  G  R  L  H  L  P  H  L  A  D  T  A  Y  S  A  I  W  R  E  S  E  S  Y  A  :  E  L  I  G  P  Y  W  S  L  R  A  A  L  G  P  V  L  E  T  L  I  L  L  D  R  L  L  L  L  Q  E  Y  G  S  D  L  E  A  S  L  L  P  I  F  N  P  V  L  S  P  R  N  M  A  I  I  A  R  K  I  R  K  *  K  I  F  Y  S  L  *  K  C  D  S  T  Y  C  V  A  M  I  C  S  Q  I  F  *  P  L  L  C  Y  P  F  F  N  K  S  S  L  T  K  R  K  N  V  R  R  K  E  A  I  C  D  Q  E  Q  A  I  L  L  Q  M  S  F  *  P  E  K  E  E  Q  K  K  Q  E  K  F  C  N  Q  D  L  A  L  Y  M  V  Q  A  K  N  E  A  L  V  V  K  W  Y  Y  I  Y  L  S  I  D  D  I  W  F  A  R  C  L  F  T  H  L  I  S  S  L  Y  T  A  V  F  S  Q  G  E  K  T  S  P  R  M  R  M  W  L  S  I  E  I  Y  I  Q  P  I  A  N  L  N  V  G  F  T  F  *  L  L  R  V  L  M  I  M  I  L  S  F  I  H  F  G  M  *  C  H  E  K  L  S  F  L  I  Y  K  L  W  R  V  V  S  T  V  L  *  S  I  Q  G  Q  *  T  N  D  R :   R  E  *  L  A  K  S  L  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0179K09.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25688" stop="25828"/>
                    <exon start="26550" stop="26738"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSNSESNAVDRCSLFAKFCESGLGRLHLPHLADTAYSAIWRESESYAELIGPYWSLRAALGPVLETLILLDRLLLLQEYGSDLEASLLPIFNPVLSPRNMAIIARKIRK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0179K09.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26928" stop="27212"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PEKEEQKKQEKFCNQDLALYMVQAKNEALVVKWYYIYLSIDDIWFARCLFTHLISSLYTAVFSQGEKTSPRMRMWLSIEIYIQPIANLNVGFTF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="25203" e_stop="25289"/>
            <exon e_start="25638" e_stop="25828"/>
            <exon e_start="26550" e_stop="26840"/>
            <exon e_start="26946" e_stop="26971"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.793" acc_prob="0.927" e_score="0.977"/>
          <exon-intron don_prob="0.994" acc_prob="0.241" e_score="0.948"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.990"/>
          <exon-only e_score="0.615"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="25203" e_stop="25289" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.793" acc_prob="0.927">
            <gDNA_intron_boundary i_start="25290" i_stop="25637" i_length="348"/>
          </intron>
          <exon e_serial="2" e_score="0.948">
            <gDNA_exon_boundary e_start="25638" e_stop="25828" e_length="191"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.241">
            <gDNA_intron_boundary i_start="25829" i_stop="26549" i_length="721"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="26550" e_stop="26840" e_length="291"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="26841" i_stop="26945" i_length="105"/>
          </intron>
          <exon e_serial="4" e_score="0.615">
            <gDNA_exon_boundary e_start="26946" e_stop="26971" e_length="26"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25203" stop="25289"/>
              <exon start="25638" stop="25828"/>
              <exon start="26550" stop="26840"/>
              <exon start="26946" stop="26971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359308" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGGGCGTCAGGGGAAAGCCTTACGGCGCCAACAGAATCAAAGGATCCTGGAATCCAATTTGCATCATGGGGGGTCGTCAGAATCTG : GTGAACCACGGGAGAGTGTGGCGTTTCTTCATGAATACTCTTCTATTCAGAGTTCTAATAGCGAGTCTAACGCTGTGGACAGATGCTCACTATTTGCAAAATTTTGCGAGTCTGGGTTAGGTCGTTTACATCTCCCTCATTTGGCGGATACAGCTTACAGTGCAATCTGGAGGGAGTCTGAATCATACGCT : GAGTTAATAGGACCTTATTGGTCTCTTCGTGCTGCCCTGGGCCCCGTTTTGGAAACTCTTATACTGCTTGACCGATTGTTGCTCCTCCAGGAGTATGGCAGTGATCTGGAGGCAAGCCTCTTACCTATTTTTAATCCTGTGTTATCTCCGAGGAATATGGCTATCATAGCTAGGAAAATTAGAAAGTAGAAAATTTTCTACAGTCTCTAAAAATGTGATTCAACATACTGTGTTGCTATGATTTGTTCTCAGATATTTTGACCGCTTCTGTGTTATCCTTTTTTTAATAAA : AAGAAACAGGAAAAATTTTGCAACCA</gDNA_template>
            <first_frame> *  G  V  R  G  K  P  Y  G  A  N  R  I  K  G  S  W  N  P  I  C  I  M  G  G  R  Q  N  L  :  V  N  H  G  R  V  W  R  F  F  M  N  T  L  L  F  R  V  L  I  A  S  L  T  L  W  T  D  A  H  Y  L  Q  N  F  A  S  L  G  *  V  V  Y  I  S  L  I  W  R  I  Q  L  T  V  Q  S  G  G  S  L  N  H  T  L :   S  *  *  D  L  I  G  L  F  V  L  P  W  A  P  F  W  K  L  L  Y  C  L  T  D  C  C  S  S  R  S  M  A  V  I  W  R  Q  A  S  Y  L  F  L  I  L  C  Y  L  R  G  I  W  L  S  *  L  G  K  L  E  S  R  K  F  S  T  V  S  K  N  V  I  Q  H  T  V  L  L  *  F  V  L  R  Y  F  D  R  F  C  V  I  L  F  L  I  K :   R  N  R  K  N  F  A  T  </first_frame>
            <second_frame>  R  A  S  G  E  S  L  T  A  P  T  E  S  K  D  P  G  I  Q  F  A  S  W  G  V  V  R  I  W :   *  T  T  G  E  C  G  V  S  S  *  I  L  F  Y  S  E  F  *  *  R  V  *  R  C  G  Q  M  L  T  I  C  K  I  L  R  V  W  V  R  S  F  T  S  P  S  F  G  G  Y  S  L  Q  C  N  L  E  G  V  *  I  I  R   : *  V  N  R  T  L  L  V  S  S  C  C  P  G  P  R  F  G  N  S  Y  T  A  *  P  I  V  A  P  P  G  V  W  Q  *  S  G  G  K  P  L  T  Y  F  *  S  C  V  I  S  E  E  Y  G  Y  H  S  *  E  N  *  K  V  E  N  F  L  Q  S  L  K  M  *  F  N  I  L  C  C  Y  D  L  F  S  D  I  L  T  A  S  V  L  S  F  F  *  *   : K  E  T  G  K  I  L  Q  P </second_frame>
            <third_frame>   G  R  Q  G  K  A  L  R  R  Q  Q  N  Q  R  I  L  E  S  N  L  H  H  G  G  S  S  E  S   : G  E  P  R  E  S  V  A  F  L  H  E  Y  S  S  I  Q  S  S  N  S  E  S  N  A  V  D  R  C  S  L  F  A  K  F  C  E  S  G  L  G  R  L  H  L  P  H  L  A  D  T  A  Y  S  A  I  W  R  E  S  E  S  Y  A  :  E  L  I  G  P  Y  W  S  L  R  A  A  L  G  P  V  L  E  T  L  I  L  L  D  R  L  L  L  L  Q  E  Y  G  S  D  L  E  A  S  L  L  P  I  F  N  P  V  L  S  P  R  N  M  A  I  I  A  R  K  I  R  K  *  K  I  F  Y  S  L  *  K  C  D  S  T  Y  C  V  A  M  I  C  S  Q  I  F  *  P  L  L  C  Y  P  F  F  N  K  :  K  K  Q  E  K  F  C  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0179K09.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25205" stop="25289"/>
                    <exon start="25638" stop="25828"/>
                    <exon start="26550" stop="26738"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GRQGKALRRQQNQRILESNLHHGGSSESGEPRESVAFLHEYSSIQSSNSESNAVDRCSLFAKFCESGLGRLHLPHLADTAYSAIWRESESYAELIGPYWSLRAALGPVLETLILLDRLLLLQEYGSDLEASLLPIFNPVLSPRNMAIIARKIRK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="30263" PGL_stop="30847"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30263" e_stop="30847"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="30263" e_stop="30847" e_length="585"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30263" stop="30847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271645" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATTAGTCAATCCAAAATTTTTCCCTAAAAGGAAAACCTATTTATGTTAAGAAATTATGGTAAATAAAATCCAACAAATCTCCTCCCCCTTGGCCTGTATTTCTGACAAAATAAATTTCTCCACATTCTTCATTTAATCTTCAACAACTTGCTTCTCTTCTTCTTAATCTCCTTTGTAAAATTTATGTCTCAACATAGAAAACCTCTCTGAAACAATTTCTCCAACAAAATCTTCATTACTGTCAAAAAGATTGCGGCTAGAACTACACCTGTCAAGATGAACACACCTCTTTCTAACCTGGTCCAATAATCGATTATCGAACCACTGAACCTGACTCTGTCATTAAATGGCTCTAATACCACTTGTTAGGATCGAAATAAGCAGGTGTAAATGCGGAAGCTAGCAAAGCAAACTTCGAAAGACCACGAGTAAGAAGACAACGAGAAATATACCAAAAGACACAAAGATTTAACGTGGTTCGGTCAATCGACCTACGTTCACAAAGGAGATGAGCAATCCACTATAAATATGAGAGTACAATATACAGAGAGAAACAACATCAACCAATTCATTCGGAATATATG</gDNA_template>
            <first_frame> D  *  S  I  Q  N  F  S  L  K  G  K  P  I  Y  V  K  K  L  W  *  I  K  S  N  K  S  P  P  P  W  P  V  F  L  T  K  *  I  S  P  H  S  S  F  N  L  Q  Q  L  A  S  L  L  L  N  L  L  C  K  I  Y  V  S  T  *  K  T  S  L  K  Q  F  L  Q  Q  N  L  H  Y  C  Q  K  D  C  G  *  N  Y  T  C  Q  D  E  H  T  S  F  *  P  G  P  I  I  D  Y  R  T  T  E  P  D  S  V  I  K  W  L  *  Y  H  L  L  G  S  K  *  A  G  V  N  A  E  A  S  K  A  N  F  E  R  P  R  V  R  R  Q  R  E  I  Y  Q  K  T  Q  R  F  N  V  V  R  S  I  D  L  R  S  Q  R  R  *  A  I  H  Y  K  Y  E  S  T  I  Y  R  E  K  Q  H  Q  P  I  H  S  E  Y  M </first_frame>
            <second_frame>  I  S  Q  S  K  I  F  P  *  K  E  N  L  F  M  L  R  N  Y  G  K  *  N  P  T  N  L  L  P  L  G  L  Y  F  *  Q  N  K  F  L  H  I  L  H  L  I  F  N  N  L  L  L  F  F  L  I  S  F  V  K  F  M  S  Q  H  R  K  P  L  *  N  N  F  S  N  K  I  F  I  T  V  K  K  I  A  A  R  T  T  P  V  K  M  N  T  P  L  S  N  L  V  Q  *  S  I  I  E  P  L  N  L  T  L  S  L  N  G  S  N  T  T  C  *  D  R  N  K  Q  V  *  M  R  K  L  A  K  Q  T  S  K  D  H  E  *  E  D  N  E  K  Y  T  K  R  H  K  D  L  T  W  F  G  Q  S  T  Y  V  H  K  G  D  E  Q  S  T  I  N  M  R  V  Q  Y  T  E  R  N  N  I  N  Q  F  I  R  N  I   </second_frame>
            <third_frame>   L  V  N  P  K  F  F  P  K  R  K  T  Y  L  C  *  E  I  M  V  N  K  I  Q  Q  I  S  S  P  L  A  C  I  S  D  K  I  N  F  S  T  F  F  I  *  S  S  T  T  C  F  S  S  S  *  S  P  L  *  N  L  C  L  N  I  E  N  L  S  E  T  I  S  P  T  K  S  S  L  L  S  K  R  L  R  L  E  L  H  L  S  R  *  T  H  L  F  L  T  W  S  N  N  R  L  S  N  H  *  T  *  L  C  H  *  M  A  L  I  P  L  V  R  I  E  I  S  R  C  K  C  G  S  *  Q  S  K  L  R  K  T  T  S  K  K  T  T  R  N  I  P  K  D  T  K  I  *  R  G  S  V  N  R  P  T  F  T  K  E  M  S  N  P  L  *  I  *  E  Y  N  I  Q  R  E  T  T  S  T  N  S  F  G  I  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0179K09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="34967" PGL_stop="40361"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34967" e_stop="35711"/>
            <exon e_start="37726" e_stop="37997"/>
            <exon e_start="39469" e_stop="39482"/>
            <exon e_start="39590" e_stop="40361"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="0.897"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="0.857"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34967" e_stop="35711" e_length="745"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="35712" i_stop="37725" i_length="2014"/>
          </intron>
          <exon e_serial="2" e_score="0.897">
            <gDNA_exon_boundary e_start="37726" e_stop="37997" e_length="272"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="37998" i_stop="39468" i_length="1471"/>
          </intron>
          <exon e_serial="3" e_score="0.857">
            <gDNA_exon_boundary e_start="39469" e_stop="39482" e_length="14"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="39483" i_stop="39589" i_length="107"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="39590" e_stop="40361" e_length="772"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34967" stop="35649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34968" stop="35573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34968" stop="35530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35276" stop="35711"/>
              <exon start="37726" stop="37809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35484" stop="35711"/>
              <exon start="37726" stop="37758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35503" stop="35711"/>
              <exon start="37726" stop="37803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367881" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35505" stop="35711"/>
              <exon start="37726" stop="37997"/>
              <exon start="39469" stop="39482"/>
              <exon start="39590" stop="39814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E623199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35505" stop="35711"/>
              <exon start="37726" stop="37997"/>
              <exon start="39469" stop="39482"/>
              <exon start="39590" stop="39800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35505" stop="35711"/>
              <exon start="37726" stop="37997"/>
              <exon start="39469" stop="39482"/>
              <exon start="39590" stop="39739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39813" stop="40361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395596" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTCCTTTTACTATATTCTAAAAATATGACACATAATATTTTAAGTACTATATTAAGAAATAAAATTAGTTTGTCTTCTTAAACTCAAGGGTCGTTGTTGGATGCTTTTTACACTATTATCTTAATTTTAAAATTCTCTTTTTATTTTTGTGATACACTTTTATTAGCTAGCCACCAAATAACCAAAATATCACGATATATATAAATTTATTCAAAATAATTTCTATTATATTTTATATATTCCAAAACTTTTCATTTTTTTTTATAAATTTTGTGTCTAGTCAACATGAATACATATAACTTTTTCAGTAAGTTTTATTAAATACGATTATATAGATCAAAAAAGAAATTTTTTATTAAATTTTATTTCAGTTCAAAATAGCGTAATTTAAAATAATATTGAAATTAGCCATGGGACTATAATAACTAGTGCTTATATATAGATGTAGTAGAGTACCATTTTAGTGATGTTAATAGGGAAATATTTTTATCAACCACCTCCCCTTGGACTTTGATACACTTAAATCTCCTCTTTCTTTTCATTTCTCTTCAAAATGAGTAACAACAACAGCTTGAGCATGGTGGAATCCAAATTACCACCAGGATTTAGATTCCATCCAAGAGATGAAGAACTTATTTGTGATTACTTAATGAAGAAAGTTGATCAACAATCCGAATATCAACAACAATACCCTCTTCTCATAGAAGTTGACCTCAATAAATCTGAACCATGGGAAATTCCTG : AAGTGGCATGTGTTGGAGGGAAGGAGTGGTACTTCTACAGCCAACGTGACCGAAAATACGCGACGGGGCTCCGAACAAACAGAGCCACCGTATCTGGTTACTGGAAAGCCACCGGAAAAGATCGTGCAATCATCAGAAAAGGAAGTCTAGTAGGAATGAGAAAAACCCTAGTTTTCTATCAAGGGAGAGCCCCAAAAGGAAGAAAAAGTGACTGGGTTATGCATGAATTCCGCCTAGAACTTCCCATTCGTCCTCAAATTTCTTCTATCAAG : TTTTTTCTCTCAAT : GAGGATTGGGTATTATGCCGAGTATTTCACAAGAAGAAGGAATTACTTGCTACAAAGCAAGAAATTGGAAGCAACAATATATACTACGATAACGATACAATAAGTTGTTCATCTCTACCACCATTAATGGATCCTTACATTACTTTCGACCAAACAAACCCTAACAACAATAATATGAATATGAATGAATTATATTATGAGCAAGTGCCCTGCTTCTCCATTTTCACCCCTAACCAAACTTTCACTTCCCATAGCCACCACCTCCCCTCCGCCACAACCGCCATCGGATCTACCGCATACGGTGGTTTTCCAGCTGATATTGGAAATTACCTAAATGCCACTGCAACATCCTCTACGTGTGATAATAACAAAGTAATTAGAGCTGTTTTAAGTCATTTGAGTACCAAGAATAATATTATTATGGAAGGTAATAATAGCAATAACAACAATATTATCAATCCTGCCCAAAATATAAAAGGAGGAAATTCACCTAGCTTTGGTGAAGGAAGTTCTGAAACTAGCTTTTTATCTGAGGTGGGATATCCTACAATGTGGAACAATTATTGATTTTTGAGAGAAAATATTCTACTTAGATGTGTGATATAATATATGACAAGTCTTGTTTTAGTTGCTAGTATTATATTGTAATCTTAGAATATATATATATAACTATACTAGCTAGATTAATTTCCAATGCATGTAATTCCAATAATGATACTTTCCTAGTGGTTAATGTATATAATTGTCTCCTAGATAGATTGGAATTCTCCGT</gDNA_template>
            <first_frame> F  S  F  Y  Y  I  L  K  I  *  H  I  I  F  *  V  L  Y  *  E  I  K  L  V  C  L  L  K  L  K  G  R  C  W  M  L  F  T  L  L  S  *  F  *  N  S  L  F  I  F  V  I  H  F  Y  *  L  A  T  K  *  P  K  Y  H  D  I  Y  K  F  I  Q  N  N  F  Y  Y  I  L  Y  I  P  K  L  F  I  F  F  Y  K  F  C  V  *  S  T  *  I  H  I  T  F  S  V  S  F  I  K  Y  D  Y  I  D  Q  K  R  N  F  L  L  N  F  I  S  V  Q  N  S  V  I  *  N  N  I  E  I  S  H  G  T  I  I  T  S  A  Y  I  *  M  *  *  S  T  I  L  V  M  L  I  G  K  Y  F  Y  Q  P  P  P  L  G  L  *  Y  T  *  I  S  S  F  F  S  F  L  F  K  M  S  N  N  N  S  L  S  M  V  E  S  K  L  P  P  G  F  R  F  H  P  R  D  E  E  L  I  C  D  Y  L  M  K  K  V  D  Q  Q  S  E  Y  Q  Q  Q  Y  P  L  L  I  E  V  D  L  N  K  S  E  P  W  E  I  P   : E  V  A  C  V  G  G  K  E  W  Y  F  Y  S  Q  R  D  R  K  Y  A  T  G  L  R  T  N  R  A  T  V  S  G  Y  W  K  A  T  G  K  D  R  A  I  I  R  K  G  S  L  V  G  M  R  K  T  L  V  F  Y  Q  G  R  A  P  K  G  R  K  S  D  W  V  M  H  E  F  R  L  E  L  P  I  R  P  Q  I  S  S  I  K  :  F  F  L  S  M :   R  I  G  Y  Y  A  E  Y  F  T  R  R  R  N  Y  L  L  Q  S  K  K  L  E  A  T  I  Y  T  T  I  T  I  Q  *  V  V  H  L  Y  H  H  *  W  I  L  T  L  L  S  T  K  Q  T  L  T  T  I  I  *  I  *  M  N  Y  I  M  S  K  C  P  A  S  P  F  S  P  L  T  K  L  S  L  P  I  A  T  T  S  P  P  P  Q  P  P  S  D  L  P  H  T  V  V  F  Q  L  I  L  E  I  T  *  M  P  L  Q  H  P  L  R  V  I  I  T  K  *  L  E  L  F  *  V  I  *  V  P  R  I  I  L  L  W  K  V  I  I  A  I  T  T  I  L  S  I  L  P  K  I  *  K  E  E  I  H  L  A  L  V  K  E  V  L  K  L  A  F  Y  L  R  W  D  I  L  Q  C  G  T  I  I  D  F  *  E  K  I  F  Y  L  D  V  *  Y  N  I  *  Q  V  L  F  *  L  L  V  L  Y  C  N  L  R  I  Y  I  Y  N  Y  T  S  *  I  N  F  Q  C  M  *  F  Q  *  *  Y  F  P  S  G  *  C  I  *  L  S  P  R  *  I  G  I  L  R </first_frame>
            <second_frame>  F  P  F  T  I  F  *  K  Y  D  T  *  Y  F  K  Y  Y  I  K  K  *  N  *  F  V  F  L  N  S  R  V  V  V  G  C  F  L  H  Y  Y  L  N  F  K  I  L  F  L  F  L  *  Y  T  F  I  S  *  P  P  N  N  Q  N  I  T  I  Y  I  N  L  F  K  I  I  S  I  I  F  Y  I  F  Q  N  F  S  F  F  F  I  N  F  V  S  S  Q  H  E  Y  I  *  L  F  Q  *  V  L  L  N  T  I  I  *  I  K  K  E  I  F  Y  *  I  L  F  Q  F  K  I  A  *  F  K  I  I  L  K  L  A  M  G  L  *  *  L  V  L  I  Y  R  C  S  R  V  P  F  *  *  C  *  *  G  N  I  F  I  N  H  L  P  L  D  F  D  T  L  K  S  P  L  S  F  H  F  S  S  K  *  V  T  T  T  A  *  A  W  W  N  P  N  Y  H  Q  D  L  D  S  I  Q  E  M  K  N  L  F  V  I  T  *  *  R  K  L  I  N  N  P  N  I  N  N  N  T  L  F  S  *  K  L  T  S  I  N  L  N  H  G  K  F  L  :  K  W  H  V  L  E  G  R  S  G  T  S  T  A  N  V  T  E  N  T  R  R  G  S  E  Q  T  E  P  P  Y  L  V  T  G  K  P  P  E  K  I  V  Q  S  S  E  K  E  V  *  *  E  *  E  K  P  *  F  S  I  K  G  E  P  Q  K  E  E  K  V  T  G  L  C  M  N  S  A  *  N  F  P  F  V  L  K  F  L  L  S  S :   F  F  S  Q   : *  G  L  G  I  M  P  S  I  S  Q  E  E  G  I  T  C  Y  K  A  R  N  W  K  Q  Q  Y  I  L  R  *  R  Y  N  K  L  F  I  S  T  T  I  N  G  S  L  H  Y  F  R  P  N  K  P  *  Q  Q  *  Y  E  Y  E  *  I  I  L  *  A  S  A  L  L  L  H  F  H  P  *  P  N  F  H  F  P  *  P  P  P  P  L  R  H  N  R  H  R  I  Y  R  I  R  W  F  S  S  *  Y  W  K  L  P  K  C  H  C  N  I  L  Y  V  *  *  *  Q  S  N  *  S  C  F  K  S  F  E  Y  Q  E  *  Y  Y  Y  G  R  *  *  *  Q  *  Q  Q  Y  Y  Q  S  C  P  K  Y  K  R  R  K  F  T  *  L  W  *  R  K  F  *  N  *  L  F  I  *  G  G  I  S  Y  N  V  E  Q  L  L  I  F  E  R  K  Y  S  T  *  M  C  D  I  I  Y  D  K  S  C  F  S  C  *  Y  Y  I  V  I  L  E  Y  I  Y  I  T  I  L  A  R  L  I  S  N  A  C  N  S  N  N  D  T  F  L  V  V  N  V  Y  N  C  L  L  D  R  L  E  F  S   </second_frame>
            <third_frame>   F  L  L  L  Y  S  K  N  M  T  H  N  I  L  S  T  I  L  R  N  K  I  S  L  S  S  *  T  Q  G  S  L  L  D  A  F  Y  T  I  I  L  I  L  K  F  S  F  Y  F  C  D  T  L  L  L  A  S  H  Q  I  T  K  I  S  R  Y  I  *  I  Y  S  K  *  F  L  L  Y  F  I  Y  S  K  T  F  H  F  F  L  *  I  L  C  L  V  N  M  N  T  Y  N  F  F  S  K  F  Y  *  I  R  L  Y  R  S  K  K  K  F  F  I  K  F  Y  F  S  S  K  *  R  N  L  K  *  Y  *  N  *  P  W  D  Y  N  N  *  C  L  Y  I  D  V  V  E  Y  H  F  S  D  V  N  R  E  I  F  L  S  T  T  S  P  W  T  L  I  H  L  N  L  L  F  L  F  I  S  L  Q  N  E  *  Q  Q  Q  L  E  H  G  G  I  Q  I  T  T  R  I  *  I  P  S  K  R  *  R  T  Y  L  *  L  L  N  E  E  S  *  S  T  I  R  I  S  T  T  I  P  S  S  H  R  S  *  P  Q  *  I  *  T  M  G  N  S  * :   S  G  M  C  W  R  E  G  V  V  L  L  Q  P  T  *  P  K  I  R  D  G  A  P  N  K  Q  S  H  R  I  W  L  L  E  S  H  R  K  R  S  C  N  H  Q  K  R  K  S  S  R  N  E  K  N  P  S  F  L  S  R  E  S  P  K  R  K  K  K  *  L  G  Y  A  *  I  P  P  R  T  S  H  S  S  S  N  F  F  Y  Q   : V  F  S  L  N  :  E  D  W  V  L  C  R  V  F  H  K  K  K  E  L  L  A  T  K  Q  E  I  G  S  N  N  I  Y  Y  D  N  D  T  I  S  C  S  S  L  P  P  L  M  D  P  Y  I  T  F  D  Q  T  N  P  N  N  N  N  M  N  M  N  E  L  Y  Y  E  Q  V  P  C  F  S  I  F  T  P  N  Q  T  F  T  S  H  S  H  H  L  P  S  A  T  T  A  I  G  S  T  A  Y  G  G  F  P  A  D  I  G  N  Y  L  N  A  T  A  T  S  S  T  C  D  N  N  K  V  I  R  A  V  L  S  H  L  S  T  K  N  N  I  I  M  E  G  N  N  S  N  N  N  N  I  I  N  P  A  Q  N  I  K  G  G  N  S  P  S  F  G  E  G  S  S  E  T  S  F  L  S  E  V  G  Y  P  T  M  W  N  N  Y  *  F  L  R  E  N  I  L  L  R  C  V  I  *  Y  M  T  S  L  V  L  V  A  S  I  I  L  *  S  *  N  I  Y  I  *  L  Y  *  L  D  *  F  P  M  H  V  I  P  I  M  I  L  S  *  W  L  M  Y  I  I  V  S  *  I  D  W  N  S  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0179K09.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37952" stop="37997"/>
                    <exon start="39469" stop="39482"/>
                    <exon start="39590" stop="40156"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>624</number_coding_nucleotides>
                  <number_encoded_amino_acids>208</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IPPRTSHSSSNFFYQVFSLNEDWVLCRVFHKKKELLATKQEIGSNNIYYDNDTISCSSLPPLMDPYITFDQTNPNNNNMNMNELYYEQVPCFSIFTPNQTFTSHSHHLPSATTAIGSTAYGGFPADIGNYLNATATSSTCDNNKVIRAVLSHLSTKNNIIMEGNNSNNNNIINPAQNIKGGNSPSFGEGSSETSFLSEVGYPTMWNNY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0179K09.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35492" stop="35711"/>
                    <exon start="37726" stop="37997"/>
                    <exon start="39469" stop="39482"/>
                    <exon start="39590" stop="39692"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>606</number_coding_nucleotides>
                  <number_encoded_amino_acids>202</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISSFFSFLFKMSNNNSLSMVESKLPPGFRFHPRDEELICDYLMKKVDQQSEYQQQYPLLIEVDLNKSEPWEIPEVACVGGKEWYFYSQRDRKYATGLRTNRATVSGYWKATGKDRAIIRKGSLVGMRKTLVFYQGRAPKGRKSDWVMHEFRLELPIRPQISSIKFFLSMRIGYYAEYFTRRRNYLLQSKKLEATIYTTITIQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="34967" e_stop="35711"/>
            <exon e_start="37726" e_stop="37997"/>
            <exon e_start="39590" e_stop="39625"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.996"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34967" e_stop="35711" e_length="745"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="35712" i_stop="37725" i_length="2014"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="37726" e_stop="37997" e_length="272"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37998" i_stop="39589" i_length="1592"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="39590" e_stop="39625" e_length="36"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34967" stop="35649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34968" stop="35573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34968" stop="35530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35276" stop="35711"/>
              <exon start="37726" stop="37809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35484" stop="35711"/>
              <exon start="37726" stop="37758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35503" stop="35711"/>
              <exon start="37726" stop="37803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367881" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35635" stop="35711"/>
              <exon start="37726" stop="37997"/>
              <exon start="39590" stop="39625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200066" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTCCTTTTACTATATTCTAAAAATATGACACATAATATTTTAAGTACTATATTAAGAAATAAAATTAGTTTGTCTTCTTAAACTCAAGGGTCGTTGTTGGATGCTTTTTACACTATTATCTTAATTTTAAAATTCTCTTTTTATTTTTGTGATACACTTTTATTAGCTAGCCACCAAATAACCAAAATATCACGATATATATAAATTTATTCAAAATAATTTCTATTATATTTTATATATTCCAAAACTTTTCATTTTTTTTTATAAATTTTGTGTCTAGTCAACATGAATACATATAACTTTTTCAGTAAGTTTTATTAAATACGATTATATAGATCAAAAAAGAAATTTTTTATTAAATTTTATTTCAGTTCAAAATAGCGTAATTTAAAATAATATTGAAATTAGCCATGGGACTATAATAACTAGTGCTTATATATAGATGTAGTAGAGTACCATTTTAGTGATGTTAATAGGGAAATATTTTTATCAACCACCTCCCCTTGGACTTTGATACACTTAAATCTCCTCTTTCTTTTCATTTCTCTTCAAAATGAGTAACAACAACAGCTTGAGCATGGTGGAATCCAAATTACCACCAGGATTTAGATTCCATCCAAGAGATGAAGAACTTATTTGTGATTACTTAATGAAGAAAGTTGATCAACAATCCGAATATCAACAACAATACCCTCTTCTCATAGAAGTTGACCTCAATAAATCTGAACCATGGGAAATTCCTG : AAGTGGCATGTGTTGGAGGGAAGGAGTGGTACTTCTACAGCCAACGTGACCGAAAATACGCGACGGGGCTCCGAACAAACAGAGCCACCGTATCTGGTTACTGGAAAGCCACCGGAAAAGATCGTGCAATCATCAGAAAAGGAAGTCTAGTAGGAATGAGAAAAACCCTAGTTTTCTATCAAGGGAGAGCCCCAAAAGGAAGAAAAAGTGACTGGGTTATGCATGAATTCCGCCTAGAACTTCCCATTCGTCCTCAAATTTCTTCTATCAAG : GAGGATTGGGTATTATGCCGAGTATTTCACAAGAAG</gDNA_template>
            <first_frame> F  S  F  Y  Y  I  L  K  I  *  H  I  I  F  *  V  L  Y  *  E  I  K  L  V  C  L  L  K  L  K  G  R  C  W  M  L  F  T  L  L  S  *  F  *  N  S  L  F  I  F  V  I  H  F  Y  *  L  A  T  K  *  P  K  Y  H  D  I  Y  K  F  I  Q  N  N  F  Y  Y  I  L  Y  I  P  K  L  F  I  F  F  Y  K  F  C  V  *  S  T  *  I  H  I  T  F  S  V  S  F  I  K  Y  D  Y  I  D  Q  K  R  N  F  L  L  N  F  I  S  V  Q  N  S  V  I  *  N  N  I  E  I  S  H  G  T  I  I  T  S  A  Y  I  *  M  *  *  S  T  I  L  V  M  L  I  G  K  Y  F  Y  Q  P  P  P  L  G  L  *  Y  T  *  I  S  S  F  F  S  F  L  F  K  M  S  N  N  N  S  L  S  M  V  E  S  K  L  P  P  G  F  R  F  H  P  R  D  E  E  L  I  C  D  Y  L  M  K  K  V  D  Q  Q  S  E  Y  Q  Q  Q  Y  P  L  L  I  E  V  D  L  N  K  S  E  P  W  E  I  P   : E  V  A  C  V  G  G  K  E  W  Y  F  Y  S  Q  R  D  R  K  Y  A  T  G  L  R  T  N  R  A  T  V  S  G  Y  W  K  A  T  G  K  D  R  A  I  I  R  K  G  S  L  V  G  M  R  K  T  L  V  F  Y  Q  G  R  A  P  K  G  R  K  S  D  W  V  M  H  E  F  R  L  E  L  P  I  R  P  Q  I  S  S  I  K  :  E  D  W  V  L  C  R  V  F  H  K  K </first_frame>
            <second_frame>  F  P  F  T  I  F  *  K  Y  D  T  *  Y  F  K  Y  Y  I  K  K  *  N  *  F  V  F  L  N  S  R  V  V  V  G  C  F  L  H  Y  Y  L  N  F  K  I  L  F  L  F  L  *  Y  T  F  I  S  *  P  P  N  N  Q  N  I  T  I  Y  I  N  L  F  K  I  I  S  I  I  F  Y  I  F  Q  N  F  S  F  F  F  I  N  F  V  S  S  Q  H  E  Y  I  *  L  F  Q  *  V  L  L  N  T  I  I  *  I  K  K  E  I  F  Y  *  I  L  F  Q  F  K  I  A  *  F  K  I  I  L  K  L  A  M  G  L  *  *  L  V  L  I  Y  R  C  S  R  V  P  F  *  *  C  *  *  G  N  I  F  I  N  H  L  P  L  D  F  D  T  L  K  S  P  L  S  F  H  F  S  S  K  *  V  T  T  T  A  *  A  W  W  N  P  N  Y  H  Q  D  L  D  S  I  Q  E  M  K  N  L  F  V  I  T  *  *  R  K  L  I  N  N  P  N  I  N  N  N  T  L  F  S  *  K  L  T  S  I  N  L  N  H  G  K  F  L  :  K  W  H  V  L  E  G  R  S  G  T  S  T  A  N  V  T  E  N  T  R  R  G  S  E  Q  T  E  P  P  Y  L  V  T  G  K  P  P  E  K  I  V  Q  S  S  E  K  E  V  *  *  E  *  E  K  P  *  F  S  I  K  G  E  P  Q  K  E  E  K  V  T  G  L  C  M  N  S  A  *  N  F  P  F  V  L  K  F  L  L  S  R :   R  I  G  Y  Y  A  E  Y  F  T  R   </second_frame>
            <third_frame>   F  L  L  L  Y  S  K  N  M  T  H  N  I  L  S  T  I  L  R  N  K  I  S  L  S  S  *  T  Q  G  S  L  L  D  A  F  Y  T  I  I  L  I  L  K  F  S  F  Y  F  C  D  T  L  L  L  A  S  H  Q  I  T  K  I  S  R  Y  I  *  I  Y  S  K  *  F  L  L  Y  F  I  Y  S  K  T  F  H  F  F  L  *  I  L  C  L  V  N  M  N  T  Y  N  F  F  S  K  F  Y  *  I  R  L  Y  R  S  K  K  K  F  F  I  K  F  Y  F  S  S  K  *  R  N  L  K  *  Y  *  N  *  P  W  D  Y  N  N  *  C  L  Y  I  D  V  V  E  Y  H  F  S  D  V  N  R  E  I  F  L  S  T  T  S  P  W  T  L  I  H  L  N  L  L  F  L  F  I  S  L  Q  N  E  *  Q  Q  Q  L  E  H  G  G  I  Q  I  T  T  R  I  *  I  P  S  K  R  *  R  T  Y  L  *  L  L  N  E  E  S  *  S  T  I  R  I  S  T  T  I  P  S  S  H  R  S  *  P  Q  *  I  *  T  M  G  N  S  * :   S  G  M  C  W  R  E  G  V  V  L  L  Q  P  T  *  P  K  I  R  D  G  A  P  N  K  Q  S  H  R  I  W  L  L  E  S  H  R  K  R  S  C  N  H  Q  K  R  K  S  S  R  N  E  K  N  P  S  F  L  S  R  E  S  P  K  R  K  K  K  *  L  G  Y  A  *  I  P  P  R  T  S  H  S  S  S  N  F  F  Y  Q   : G  G  L  G  I  M  P  S  I  S  Q  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0179K09.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35492" stop="35711"/>
                    <exon start="37726" stop="37997"/>
                    <exon start="39590" stop="39625"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>528</number_coding_nucleotides>
                  <number_encoded_amino_acids>176</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISSFFSFLFKMSNNNSLSMVESKLPPGFRFHPRDEELICDYLMKKVDQQSEYQQQYPLLIEVDLNKSEPWEIPEVACVGGKEWYFYSQRDRKYATGLRTNRATVSGYWKATGKDRAIIRKGSLVGMRKTLVFYQGRAPKGRKSDWVMHEFRLELPIRPQISSIKEDWVLCRVFHKK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="39779" PGL_stop="35507"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39779" e_stop="39588"/>
            <exon e_start="37995" e_stop="37724"/>
            <exon e_start="35708" e_stop="35507"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.838" acc_prob="0.367" e_score="0.996"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39779" e_stop="39588" e_length="192"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="39587" i_stop="37996" i_length="1592"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="37995" e_stop="37724" e_length="272"/>
          </exon>
          <intron i_serial="2" don_prob="0.838" acc_prob="0.367">
            <gDNA_intron_boundary i_start="37723" i_stop="35709" i_length="2015"/>
          </intron>
          <exon e_serial="3" e_score="0.975">
            <gDNA_exon_boundary e_start="35708" e_stop="35507" e_length="202"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39779" stop="39588"/>
              <exon start="37995" stop="37724"/>
              <exon start="35708" stop="35507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374913" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTCATTCATATTCATATTATTGTTGTTAGGGTTTGTTTGGTCGAAAGTAATGTAAGGATCCATTAATGGTGGTAGAGATGAACAACTTATTGTATCGTTATCGTAGTATATATTGTTGCTTCCAATTTCTTGCTTTGTAGCAAGTAATTCCTTCTTCTTGTGAAATACTCGGCATAATACCCAATCCTCCT : TGATAGAAGAAATTTGAGGACGAATGGGAAGTTCTAGGCGGAATTCATGCATAACCCAGTCACTTTTTCTTCCTTTTGGGGCTCTCCCTTGATAGAAAACTAGGGTTTTTCTCATTCCTACTAGACTTCCTTTTCTGATGATTGCACGATCTTTTCCGGTGGCTTTCCAGTAACCAGATACGGTGGCTCTGTTTGTTCGGAGCCCCGTCGCGTATTTTCGGTCACGTTGGCTGTAGAAGTACCACTCCTTCCCTCCAACACATGCCACTTCT : GAATTTCCCATGGTTCAGATTTATTGAGGTCAACTTCTATGAGAAGAGGGTATTGTTGTTGATATTCGGATTGTTGATCAACTTTCTTCATTAAGTAATCACAAATAAGTTCTTCATCTCTTGGATGGAATCTAAATCCTGGTGGTAATTTGGATTCCACCATGCTCAAGCTGTTGTTGTTACTCATTTTGAAGAGAAATGA</gDNA_template>
            <first_frame> I  H  S  Y  S  Y  Y  C  C  *  G  L  F  G  R  K  *  C  K  D  P  L  M  V  V  E  M  N  N  L  L  Y  R  Y  R  S  I  Y  C  C  F  Q  F  L  A  L  *  Q  V  I  P  S  S  C  E  I  L  G  I  I  P  N  P  P  :  *  *  K  K  F  E  D  E  W  E  V  L  G  G  I  H  A  *  P  S  H  F  F  F  L  L  G  L  S  L  D  R  K  L  G  F  F  S  F  L  L  D  F  L  F  *  *  L  H  D  L  F  R  W  L  S  S  N  Q  I  R  W  L  C  L  F  G  A  P  S  R  I  F  G  H  V  G  C  R  S  T  T  P  S  L  Q  H  M  P  L  L :   N  F  P  W  F  R  F  I  E  V  N  F  Y  E  K  R  V  L  L  L  I  F  G  L  L  I  N  F  L  H  *  V  I  T  N  K  F  F  I  S  W  M  E  S  K  S  W  W  *  F  G  F  H  H  A  Q  A  V  V  V  T  H  F  E  E  K  * </first_frame>
            <second_frame>  F  I  H  I  H  I  I  V  V  R  V  C  L  V  E  S  N  V  R  I  H  *  W  W  *  R  *  T  T  Y  C  I  V  I  V  V  Y  I  V  A  S  N  F  L  L  C  S  K  *  F  L  L  L  V  K  Y  S  A  *  Y  P  I  L  L :   D  R  R  N  L  R  T  N  G  K  F  *  A  E  F  M  H  N  P  V  T  F  S  S  F  W  G  S  P  L  I  E  N  *  G  F  S  H  S  Y  *  T  S  F  S  D  D  C  T  I  F  S  G  G  F  P  V  T  R  Y  G  G  S  V  C  S  E  P  R  R  V  F  S  V  T  L  A  V  E  V  P  L  L  P  S  N  T  C  H  F   : *  I  S  H  G  S  D  L  L  R  S  T  S  M  R  R  G  Y  C  C  *  Y  S  D  C  *  S  T  F  F  I  K  *  S  Q  I  S  S  S  S  L  G  W  N  L  N  P  G  G  N  L  D  S  T  M  L  K  L  L  L  L  L  I  L  K  R  N   </second_frame>
            <third_frame>   S  F  I  F  I  L  L  L  L  G  F  V  W  S  K  V  M  *  G  S  I  N  G  G  R  D  E  Q  L  I  V  S  L  S  *  Y  I  L  L  L  P  I  S  C  F  V  A  S  N  S  F  F  L  *  N  T  R  H  N  T  Q  S  S   : L  I  E  E  I  *  G  R  M  G  S  S  R  R  N  S  C  I  T  Q  S  L  F  L  P  F  G  A  L  P  *  *  K  T  R  V  F  L  I  P  T  R  L  P  F  L  M  I  A  R  S  F  P  V  A  F  Q  *  P  D  T  V  A  L  F  V  R  S  P  V  A  Y  F  R  S  R  W  L  *  K  Y  H  S  F  P  P  T  H  A  T  S  :  E  F  P  M  V  Q  I  Y  *  G  Q  L  L  *  E  E  G  I  V  V  D  I  R  I  V  D  Q  L  S  S  L  S  N  H  K  *  V  L  H  L  L  D  G  I  *  I  L  V  V  I  W  I  P  P  C  S  S  C  C  C  Y  S  F  *  R  E  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0179K09.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37854" stop="37724"/>
                    <exon start="35708" stop="35615"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LHDLFRWLSSNQIRWLCLFGAPSRIFGHVGCRSTTPSLQHMPLLNFPWFRFIEVNFYEKRVLLLIFGLLINFLH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="43916" PGL_stop="48729"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43916" e_stop="44259"/>
            <exon e_start="44361" e_stop="44452"/>
            <exon e_start="44648" e_stop="44723"/>
            <exon e_start="45069" e_stop="45131"/>
            <exon e_start="45445" e_stop="45574"/>
            <exon e_start="45701" e_stop="45786"/>
            <exon e_start="45877" e_stop="46002"/>
            <exon e_start="46321" e_stop="46425"/>
            <exon e_start="46515" e_stop="46571"/>
            <exon e_start="46992" e_stop="47054"/>
            <exon e_start="47128" e_stop="47204"/>
            <exon e_start="47681" e_stop="47753"/>
            <exon e_start="48183" e_stop="48729"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.850" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.835" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.905" e_score="1.000"/>
          <exon-intron don_prob="0.803" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43916" e_stop="44259" e_length="344"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.970">
            <gDNA_intron_boundary i_start="44260" i_stop="44360" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44361" e_stop="44452" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.987">
            <gDNA_intron_boundary i_start="44453" i_stop="44647" i_length="195"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44648" e_stop="44723" e_length="76"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="44724" i_stop="45068" i_length="345"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45069" e_stop="45131" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.850" acc_prob="0.987">
            <gDNA_intron_boundary i_start="45132" i_stop="45444" i_length="313"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="45445" e_stop="45574" e_length="130"/>
          </exon>
          <intron i_serial="5" don_prob="0.977" acc_prob="0.835">
            <gDNA_intron_boundary i_start="45575" i_stop="45700" i_length="126"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="45701" e_stop="45786" e_length="86"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="45787" i_stop="45876" i_length="90"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="45877" e_stop="46002" e_length="126"/>
          </exon>
          <intron i_serial="7" don_prob="0.900" acc_prob="0.905">
            <gDNA_intron_boundary i_start="46003" i_stop="46320" i_length="318"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="46321" e_stop="46425" e_length="105"/>
          </exon>
          <intron i_serial="8" don_prob="0.803" acc_prob="1.000">
            <gDNA_intron_boundary i_start="46426" i_stop="46514" i_length="89"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="46515" e_stop="46571" e_length="57"/>
          </exon>
          <intron i_serial="9" don_prob="0.974" acc_prob="0.968">
            <gDNA_intron_boundary i_start="46572" i_stop="46991" i_length="420"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="46992" e_stop="47054" e_length="63"/>
          </exon>
          <intron i_serial="10" don_prob="0.928" acc_prob="0.983">
            <gDNA_intron_boundary i_start="47055" i_stop="47127" i_length="73"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="47128" e_stop="47204" e_length="77"/>
          </exon>
          <intron i_serial="11" don_prob="0.939" acc_prob="0.948">
            <gDNA_intron_boundary i_start="47205" i_stop="47680" i_length="476"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="47681" e_stop="47753" e_length="73"/>
          </exon>
          <intron i_serial="12" don_prob="0.964" acc_prob="0.000">
            <gDNA_intron_boundary i_start="47754" i_stop="48182" i_length="429"/>
          </intron>
          <exon e_serial="13" e_score="0.998">
            <gDNA_exon_boundary e_start="48183" e_stop="48729" e_length="547"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43916" stop="44259"/>
              <exon start="44361" stop="44452"/>
              <exon start="44648" stop="44723"/>
              <exon start="45069" stop="45131"/>
              <exon start="45445" stop="45574"/>
              <exon start="45701" stop="45761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43930" stop="44259"/>
              <exon start="44361" stop="44452"/>
              <exon start="44648" stop="44723"/>
              <exon start="45069" stop="45131"/>
              <exon start="45445" stop="45574"/>
              <exon start="45701" stop="45786"/>
              <exon start="45877" stop="46002"/>
              <exon start="46321" stop="46425"/>
              <exon start="46515" stop="46571"/>
              <exon start="46992" stop="47054"/>
              <exon start="47128" stop="47204"/>
              <exon start="47681" stop="47753"/>
              <exon start="48183" stop="48721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43931" stop="44259"/>
              <exon start="44361" stop="44452"/>
              <exon start="44648" stop="44723"/>
              <exon start="45069" stop="45117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43934" stop="44259"/>
              <exon start="44361" stop="44452"/>
              <exon start="44648" stop="44723"/>
              <exon start="45069" stop="45131"/>
              <exon start="45445" stop="45510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43958" stop="44254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43976" stop="44259"/>
              <exon start="44361" stop="44452"/>
              <exon start="44648" stop="44723"/>
              <exon start="45069" stop="45131"/>
              <exon start="45445" stop="45483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44044" stop="44259"/>
              <exon start="44361" stop="44431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46367" stop="46425"/>
              <exon start="46515" stop="46571"/>
              <exon start="46992" stop="47054"/>
              <exon start="47128" stop="47204"/>
              <exon start="47681" stop="47753"/>
              <exon start="48183" stop="48481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46373" stop="46425"/>
              <exon start="46515" stop="46571"/>
              <exon start="46992" stop="47054"/>
              <exon start="47128" stop="47204"/>
              <exon start="47681" stop="47753"/>
              <exon start="48183" stop="48729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714777" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGGCGCCATGGAACTCCGGCGACAGCATAGCCTAAGCTCCTTCTTCAGCAAGGAGAACTGAGCTTAAGTATAGTAATATCTTTCAATCCGCTTGAACTTTGTAGTCCAAGAGAACGGAGCTTTTAAGCTAGAAACTTTAATGGAGTTAACTTTCCCAGTGAAAGCTCAGTTATTTGGCTCCAAAATTGGTCACAAATCTCTAAGCTACTCAACTTCAGTAAAATTCTACCAGAAAGTATCTCGTCCTCAATTTTCAGCATGTGGAATCAGGGTTCGTTCGGAATTTGACCATAAAATCAATGGCGCTTTCTCTCCTGATTCTGACGCTCGGATTCTCGACCGG : CAAAAAGCATTGGATGCTGCAATGAACGATATAAACAGCTCGTTTGGCAAAGGAAGCGTTACTAGATTGGGTAGTGCTGGCGGAGCTCTGGT : TGAAACTTTTCCGAGTGGCTGCTTGACGCTAGACTTTGCTTTAGGTGGTGGCATTCCCAAAGGCAGAATTGTTGAG : ATATATGGGCCCGAAAGTAGTGGAAAGACTACCTTAGCTCTCCATGCTATTGCAGAAGTACAG : AAGCTAGGAGGCAATGCAATGCTTGTTGATGCTGAGCATGCTTTTGATCCTGCATACTCCAAAGCACTTGGAGTAGATGTAGAGAATTTGATCGTCTGCCAGCCTGATAATGGAGAGATGGCTCTAGAAA : TCGCAGACCGGATGTGTAGATCAGGTGCCGTAGATCTCATTTGCATTGATTCAGTCTCAGCCCTTACTCCACGTGCTGAAATTGAG : GGAGAAATCGGGATGCAGCAAATGGGTTTACAAGCACGCCTGATGAGTCAAGCTTTACGTAAAATGTCAGGCAATGCCTCCAAAGCTGGATGTACTCTTATATTCCTCAATCAGATAAGATACAAG : ATTGGTGTTTATTACGGAAATCCTGAGGTCACAAGTGGAGGGATTGCCTTAAAGTTTTTCGCCTCCGTTCGACTTGAAATCCGTTCCACAGGGAAGATAAAATCT : GCAAAAGGAGACGAGGAAGTGGGTATTAAGGTCCGAGTGAGAGTTCAAAAGAGTAAG : GTTTCTAGACCATACAAGCAAGCAGAATTTGAAATTATGTTTGGAGAAGGAGTGAGCAAGCTG : GGTTGTGTATTAGATTGTGCGGAACTGATTGAGGTGGTGGCTAAGAAAGGTTCATGGTATAACTACGGAGAGCATAG : GCTGGGACAGGGAAGAGAGAAAGCATTGCAATATTTGAGAGAAAATCCTCTTCTCTCTGAAGAAATAGAAAAG : ATGGTTCGGTCATCGGTGCTAGAGACAAACGGGTTTTTAGGCTCTTCTTCATTGAAACATCCACTGCCGCAGCTTCTAGAGGAAGATGCACTTCAAGAGATGCAATAACGCGGATCAGAGTTCTGCTTCAATTGATTATGATAACAGAGCATTTTTCAGCCAACATTGACATCCATATGTGATTCTACATTAGAAATGAGCAAAGTTGGGGACACTGCCAGATTTGCTTTGTATGAGACCATTTCTGTGCACTAGAGATTCTTGAAGAAAGGTGTATATTCTTGTAAGCTAATGGATCTTTGCACGAAGAGGAAGACACATACATCCTGAATTAACCAAACTGAAGAATTAGAGTTAAGGTGGTGAAAAGGAGTGTTAGCTCTTTGCTGCATATTTTGTCTTTGTTTTGGTTGTACTGGTAGCCAAAATTTTGAAAATCTGAAGATTTTTGCTTGTAACATTTGCATTGGAAGTACCACTCTAGTGTTGCGTTGGTATTATTATCCCATTAGCTCTATGCATTAAGAAATCTAGTAAATATTTGTCT</gDNA_template>
            <first_frame> M  A  P  W  N  S  G  D  S  I  A  *  A  P  S  S  A  R  R  T  E  L  K  Y  S  N  I  F  Q  S  A  *  T  L  *  S  K  R  T  E  L  L  S  *  K  L  *  W  S  *  L  S  Q  *  K  L  S  Y  L  A  P  K  L  V  T  N  L  *  A  T  Q  L  Q  *  N  S  T  R  K  Y  L  V  L  N  F  Q  H  V  E  S  G  F  V  R  N  L  T  I  K  S  M  A  L  S  L  L  I  L  T  L  G  F  S  T  G :   K  K  H  W  M  L  Q  *  T  I  *  T  A  R  L  A  K  E  A  L  L  D  W  V  V  L  A  E  L  W   : L  K  L  F  R  V  A  A  *  R  *  T  L  L  *  V  V  A  F  P  K  A  E  L  L  R :   Y  M  G  P  K  V  V  E  R  L  P  *  L  S  M  L  L  Q  K  Y  R :   S  *  E  A  M  Q  C  L  L  M  L  S  M  L  L  I  L  H  T  P  K  H  L  E  *  M  *  R  I  *  S  S  A  S  L  I  M  E  R  W  L  *  K  :  S  Q  T  G  C  V  D  Q  V  P  *  I  S  F  A  L  I  Q  S  Q  P  L  L  H  V  L  K  L  R :   E  K  S  G  C  S  K  W  V  Y  K  H  A  *  *  V  K  L  Y  V  K  C  Q  A  M  P  P  K  L  D  V  L  L  Y  S  S  I  R  *  D  T  R :   L  V  F  I  T  E  I  L  R  S  Q  V  E  G  L  P  *  S  F  S  P  P  F  D  L  K  S  V  P  Q  G  R  *  N  L :   Q  K  E  T  R  K  W  V  L  R  S  E  *  E  F  K  R  V  R :   F  L  D  H  T  S  K  Q  N  L  K  L  C  L  E  K  E  *  A  S  W :   V  V  Y  *  I  V  R  N  *  L  R  W  W  L  R  K  V  H  G  I  T  T  E  S  I   : G  W  D  R  E  E  R  K  H  C  N  I  *  E  K  I  L  F  S  L  K  K  *  K  R :   W  F  G  H  R  C  *  R  Q  T  G  F  *  A  L  L  H  *  N  I  H  C  R  S  F  *  R  K  M  H  F  K  R  C  N  N  A  D  Q  S  S  A  S  I  D  Y  D  N  R  A  F  F  S  Q  H  *  H  P  Y  V  I  L  H  *  K  *  A  K  L  G  T  L  P  D  L  L  C  M  R  P  F  L  C  T  R  D  S  *  R  K  V  Y  I  L  V  S  *  W  I  F  A  R  R  G  R  H  I  H  P  E  L  T  K  L  K  N  *  S  *  G  G  E  K  E  C  *  L  F  A  A  Y  F  V  F  V  L  V  V  L  V  A  K  I  L  K  I  *  R  F  L  L  V  T  F  A  L  E  V  P  L  *  C  C  V  G  I  I  I  P  L  A  L  C  I  K  K  S  S  K  Y  L  S </first_frame>
            <second_frame>  W  R  H  G  T  P  A  T  A  *  P  K  L  L  L  Q  Q  G  E  L  S  L  S  I  V  I  S  F  N  P  L  E  L  C  S  P  R  E  R  S  F  *  A  R  N  F  N  G  V  N  F  P  S  E  S  S  V  I  W  L  Q  N  W  S  Q  I  S  K  L  L  N  F  S  K  I  L  P  E  S  I  S  S  S  I  F  S  M  W  N  Q  G  S  F  G  I  *  P  *  N  Q  W  R  F  L  S  *  F  *  R  S  D  S  R  P   : A  K  S  I  G  C  C  N  E  R  Y  K  Q  L  V  W  Q  R  K  R  Y  *  I  G  *  C  W  R  S  S  G  :  *  N  F  S  E  W  L  L  D  A  R  L  C  F  R  W  W  H  S  Q  R  Q  N  C  *   : D  I  W  A  R  K  *  W  K  D  Y  L  S  S  P  C  Y  C  R  S  T   : E  A  R  R  Q  C  N  A  C  *  C  *  A  C  F  *  S  C  I  L  Q  S  T  W  S  R  C  R  E  F  D  R  L  P  A  *  *  W  R  D  G  S  R  N :   R  R  P  D  V  *  I  R  C  R  R  S  H  L  H  *  F  S  L  S  P  Y  S  T  C  *  N  *   : G  R  N  R  D  A  A  N  G  F  T  S  T  P  D  E  S  S  F  T  *  N  V  R  Q  C  L  Q  S  W  M  Y  S  Y  I  P  Q  S  D  K  I  Q   : D  W  C  L  L  R  K  S  *  G  H  K  W  R  D  C  L  K  V  F  R  L  R  S  T  *  N  P  F  H  R  E  D  K  I   : C  K  R  R  R  G  S  G  Y  *  G  P  S  E  S  S  K  E  *   : G  F  *  T  I  Q  A  S  R  I  *  N  Y  V  W  R  R  S  E  Q  A   : G  L  C  I  R  L  C  G  T  D  *  G  G  G  *  E  R  F  M  V  *  L  R  R  A  *  :  A  G  T  G  K  R  E  S  I  A  I  F  E  R  K  S  S  S  L  *  R  N  R  K   : D  G  S  V  I  G  A  R  D  K  R  V  F  R  L  F  F  I  E  T  S  T  A  A  A  S  R  G  R  C  T  S  R  D  A  I  T  R  I  R  V  L  L  Q  L  I  M  I  T  E  H  F  S  A  N  I  D  I  H  M  *  F  Y  I  R  N  E  Q  S  W  G  H  C  Q  I  C  F  V  *  D  H  F  C  A  L  E  I  L  E  E  R  C  I  F  L  *  A  N  G  S  L  H  E  E  E  D  T  Y  I  L  N  *  P  N  *  R  I  R  V  K  V  V  K  R  S  V  S  S  L  L  H  I  L  S  L  F  W  L  Y  W  *  P  K  F  *  K  S  E  D  F  C  L  *  H  L  H  W  K  Y  H  S  S  V  A  L  V  L  L  S  H  *  L  Y  A  L  R  N  L  V  N  I  C   </second_frame>
            <third_frame>   G  A  M  E  L  R  R  Q  H  S  L  S  S  F  F  S  K  E  N  *  A  *  V  *  *  Y  L  S  I  R  L  N  F  V  V  Q  E  N  G  A  F  K  L  E  T  L  M  E  L  T  F  P  V  K  A  Q  L  F  G  S  K  I  G  H  K  S  L  S  Y  S  T  S  V  K  F  Y  Q  K  V  S  R  P  Q  F  S  A  C  G  I  R  V  R  S  E  F  D  H  K  I  N  G  A  F  S  P  D  S  D  A  R  I  L  D  R  :  Q  K  A  L  D  A  A  M  N  D  I  N  S  S  F  G  K  G  S  V  T  R  L  G  S  A  G  G  A  L  V :   E  T  F  P  S  G  C  L  T  L  D  F  A  L  G  G  G  I  P  K  G  R  I  V  E  :  I  Y  G  P  E  S  S  G  K  T  T  L  A  L  H  A  I  A  E  V  Q  :  K  L  G  G  N  A  M  L  V  D  A  E  H  A  F  D  P  A  Y  S  K  A  L  G  V  D  V  E  N  L  I  V  C  Q  P  D  N  G  E  M  A  L  E   : I  A  D  R  M  C  R  S  G  A  V  D  L  I  C  I  D  S  V  S  A  L  T  P  R  A  E  I  E  :  G  E  I  G  M  Q  Q  M  G  L  Q  A  R  L  M  S  Q  A  L  R  K  M  S  G  N  A  S  K  A  G  C  T  L  I  F  L  N  Q  I  R  Y  K  :  I  G  V  Y  Y  G  N  P  E  V  T  S  G  G  I  A  L  K  F  F  A  S  V  R  L  E  I  R  S  T  G  K  I  K  S  :  A  K  G  D  E  E  V  G  I  K  V  R  V  R  V  Q  K  S  K  :  V  S  R  P  Y  K  Q  A  E  F  E  I  M  F  G  E  G  V  S  K  L  :  G  C  V  L  D  C  A  E  L  I  E  V  V  A  K  K  G  S  W  Y  N  Y  G  E  H  R :   L  G  Q  G  R  E  K  A  L  Q  Y  L  R  E  N  P  L  L  S  E  E  I  E  K  :  M  V  R  S  S  V  L  E  T  N  G  F  L  G  S  S  S  L  K  H  P  L  P  Q  L  L  E  E  D  A  L  Q  E  M  Q  *  R  G  S  E  F  C  F  N  *  L  *  *  Q  S  I  F  Q  P  T  L  T  S  I  C  D  S  T  L  E  M  S  K  V  G  D  T  A  R  F  A  L  Y  E  T  I  S  V  H  *  R  F  L  K  K  G  V  Y  S  C  K  L  M  D  L  C  T  K  R  K  T  H  T  S  *  I  N  Q  T  E  E  L  E  L  R  W  *  K  G  V  L  A  L  C  C  I  F  C  L  C  F  G  C  T  G  S  Q  N  F  E  N  L  K  I  F  A  C  N  I  C  I  G  S  T  T  L  V  L  R  W  Y  Y  Y  P  I  S  S  M  H  *  E  I  *  *  I  F  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0179K09.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43993" stop="44259"/>
                    <exon start="44361" stop="44452"/>
                    <exon start="44648" stop="44723"/>
                    <exon start="45069" stop="45131"/>
                    <exon start="45445" stop="45574"/>
                    <exon start="45701" stop="45786"/>
                    <exon start="45877" stop="46002"/>
                    <exon start="46321" stop="46425"/>
                    <exon start="46515" stop="46571"/>
                    <exon start="46992" stop="47054"/>
                    <exon start="47128" stop="47204"/>
                    <exon start="47681" stop="47753"/>
                    <exon start="48183" stop="48290"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1320</number_coding_nucleotides>
                  <number_encoded_amino_acids>440</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YLSIRLNFVVQENGAFKLETLMELTFPVKAQLFGSKIGHKSLSYSTSVKFYQKVSRPQFSACGIRVRSEFDHKINGAFSPDSDARILDRQKALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDFALGGGIPKGRIVEIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAVDLICIDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSAKGDEEVGIKVRVRVQKSKVSRPYKQAEFEIMFGEGVSKLGCVLDCAELIEVVAKKGSWYNYGEHRLGQGREKALQYLRENPLLSEEIEKMVRSSVLETNGFLGSSSLKHPLPQLLEEDALQEMQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="43931" e_stop="44259"/>
            <exon e_start="44361" e_stop="44452"/>
            <exon e_start="44648" e_stop="44723"/>
            <exon e_start="45069" e_stop="45135"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43931" e_stop="44259" e_length="329"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.970">
            <gDNA_intron_boundary i_start="44260" i_stop="44360" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44361" e_stop="44452" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.987">
            <gDNA_intron_boundary i_start="44453" i_stop="44647" i_length="195"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44648" e_stop="44723" e_length="76"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="44724" i_stop="45068" i_length="345"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45069" e_stop="45135" e_length="67"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43931" stop="44259"/>
              <exon start="44361" stop="44452"/>
              <exon start="44648" stop="44723"/>
              <exon start="45069" stop="45117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43958" stop="44254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43962" stop="44259"/>
              <exon start="44361" stop="44452"/>
              <exon start="44648" stop="44723"/>
              <exon start="45069" stop="45135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44044" stop="44259"/>
              <exon start="44361" stop="44431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365696" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCGGCGACAGCATAGCCTAAGCTCCTTCTTCAGCAAGGAGAACTGAGCTTAAGTATAGTAATATCTTTCAATCCGCTTGAACTTTGTAGTCCAAGAGAACGGAGCTTTTAAGCTAGAAACTTTAATGGAGTTAACTTTCCCAGTGAAAGCTCAGTTATTTGGCTCCAAAATTGGTCACAAATCTCTAAGCTACTCAACTTCAGTAAAATTCTACCAGAAAGTATCTCGTCCTCAATTTTCAGCATGTGGAATCAGGGTTCGTTCGGAATTTGACCATAAAATCAATGGCGCTTTCTCTCCTGATTCTGACGCTCGGATTCTCGACCGG : CAAAAAGCATTGGATGCTGCAATGAACGATATAAACAGCTCGTTTGGCAAAGGAAGCGTTACTAGATTGGGTAGTGCTGGCGGAGCTCTGGT : TGAAACTTTTCCGAGTGGCTGCTTGACGCTAGACTTTGCTTTAGGTGGTGGCATTCCCAAAGGCAGAATTGTTGAG : ATATATGGGCCCGAAAGTAGTGGAAAGACTACCTTAGCTCTCCATGCTATTGCAGAAGTACAGGTGC</gDNA_template>
            <first_frame> S  G  D  S  I  A  *  A  P  S  S  A  R  R  T  E  L  K  Y  S  N  I  F  Q  S  A  *  T  L  *  S  K  R  T  E  L  L  S  *  K  L  *  W  S  *  L  S  Q  *  K  L  S  Y  L  A  P  K  L  V  T  N  L  *  A  T  Q  L  Q  *  N  S  T  R  K  Y  L  V  L  N  F  Q  H  V  E  S  G  F  V  R  N  L  T  I  K  S  M  A  L  S  L  L  I  L  T  L  G  F  S  T  G :   K  K  H  W  M  L  Q  *  T  I  *  T  A  R  L  A  K  E  A  L  L  D  W  V  V  L  A  E  L  W   : L  K  L  F  R  V  A  A  *  R  *  T  L  L  *  V  V  A  F  P  K  A  E  L  L  R :   Y  M  G  P  K  V  V  E  R  L  P  *  L  S  M  L  L  Q  K  Y  R  C </first_frame>
            <second_frame>  P  A  T  A  *  P  K  L  L  L  Q  Q  G  E  L  S  L  S  I  V  I  S  F  N  P  L  E  L  C  S  P  R  E  R  S  F  *  A  R  N  F  N  G  V  N  F  P  S  E  S  S  V  I  W  L  Q  N  W  S  Q  I  S  K  L  L  N  F  S  K  I  L  P  E  S  I  S  S  S  I  F  S  M  W  N  Q  G  S  F  G  I  *  P  *  N  Q  W  R  F  L  S  *  F  *  R  S  D  S  R  P   : A  K  S  I  G  C  C  N  E  R  Y  K  Q  L  V  W  Q  R  K  R  Y  *  I  G  *  C  W  R  S  S  G  :  *  N  F  S  E  W  L  L  D  A  R  L  C  F  R  W  W  H  S  Q  R  Q  N  C  *   : D  I  W  A  R  K  *  W  K  D  Y  L  S  S  P  C  Y  C  R  S  T  G   </second_frame>
            <third_frame>   R  R  Q  H  S  L  S  S  F  F  S  K  E  N  *  A  *  V  *  *  Y  L  S  I  R  L  N  F  V  V  Q  E  N  G  A  F  K  L  E  T  L  M  E  L  T  F  P  V  K  A  Q  L  F  G  S  K  I  G  H  K  S  L  S  Y  S  T  S  V  K  F  Y  Q  K  V  S  R  P  Q  F  S  A  C  G  I  R  V  R  S  E  F  D  H  K  I  N  G  A  F  S  P  D  S  D  A  R  I  L  D  R  :  Q  K  A  L  D  A  A  M  N  D  I  N  S  S  F  G  K  G  S  V  T  R  L  G  S  A  G  G  A  L  V :   E  T  F  P  S  G  C  L  T  L  D  F  A  L  G  G  G  I  P  K  G  R  I  V  E  :  I  Y  G  P  E  S  S  G  K  T  T  L  A  L  H  A  I  A  E  V  Q  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0179K09.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43993" stop="44259"/>
                    <exon start="44361" stop="44452"/>
                    <exon start="44648" stop="44723"/>
                    <exon start="45069" stop="45134"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YLSIRLNFVVQENGAFKLETLMELTFPVKAQLFGSKIGHKSLSYSTSVKFYQKVSRPQFSACGIRVRSEFDHKINGAFSPDSDARILDRQKALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDFALGGGIPKGRIVEIYGPESSGKTTLALHAIAEVQV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="50403" PGL_stop="48056"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50403" e_stop="50209"/>
            <exon e_start="49596" e_stop="49538"/>
            <exon e_start="49381" e_stop="49326"/>
            <exon e_start="49249" e_stop="49197"/>
            <exon e_start="49085" e_stop="48713"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50403" e_stop="50209" e_length="195"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49596" e_stop="49538" e_length="59"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.980">
            <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="49381" e_stop="49326" e_length="56"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="49249" e_stop="49197" e_length="53"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="49085" e_stop="48713" e_length="373"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50403" stop="50209"/>
              <exon start="49596" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50398" stop="50209"/>
              <exon start="49596" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50398" stop="50209"/>
              <exon start="49596" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50395" stop="50209"/>
              <exon start="49596" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="49065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50392" stop="50209"/>
              <exon start="49596" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50392" stop="50209"/>
              <exon start="49596" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="49002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50390" stop="50209"/>
              <exon start="49596" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50390" stop="50209"/>
              <exon start="49596" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50390" stop="50209"/>
              <exon start="49596" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50390" stop="50209"/>
              <exon start="49596" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50389" stop="50209"/>
              <exon start="49596" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50389" stop="50209"/>
              <exon start="49596" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50389" stop="50209"/>
              <exon start="49596" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50389" stop="50209"/>
              <exon start="49596" stop="49538"/>
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              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50223" stop="50209"/>
              <exon start="49596" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49594" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49588" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49585" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49585" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49584" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49580" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49580" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49573" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49573" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49570" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49569" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49568" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49568" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49568" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49565" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49564" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49558" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49546" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49545" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49545" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49544" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285747" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49543" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49542" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49378" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49378" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49376" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49373" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49372" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49355" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49354" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49338" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49238" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49226" stop="49197"/>
              <exon start="49085" stop="48868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49085" stop="48846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49065" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49047" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49047" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49031" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226668" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATAAATTGGAGCACAAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG : GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG : GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG : TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG : GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGTGTAAGGAATTCCTGCAACGATCTCAAATAACAATAATATATGAGTTCACAGACAAATATTTACTAG</gDNA_template>
            <first_frame> N  K  L  E  H  K  K  R  K  G  N  R  R  K  W  Q  A  Q  *  *  A  H  *  A  *  S  Q  L  S  L  W  R  K  Y  Q  *  K  G  F  H  H  L  L  D  L  L  L  P  S  K  L  W  L  V  V  L  R  S  L  R  L  T  N  P  M  :  E  L  M  E  A  W  P  *  E  M  G  L  M  P  Q  A  G  S  P  R :   E  R  V  C  T  N  M  L  T  N  M  E  L  M  L  M  D  T   : V  P  S  T  T  R  M  N  G  L  Q  V  V  M  S  M  L  E  :  V  P  L  A  *  P  Y  G  R  *  P  C  L  A  F  L  Q  E  V  L  S  L  S  T  T  Q  V  L  W  R  N  R  C  Y  P  C  I  V  L  L  S  L  S  C  I  P  C  Y  L  F  K  I  F  L  G  I  F  I  N  M  *  L  L  *  F  Y  C  G  *  Y  Y  I  *  C  C  C  F  R  F  L  *  I  F  *  V  *  S  *  L  D  C  Q  T  V  I  S  *  S  N  I  L  K  C  K  E  F  L  Q  R  S  Q  I  T  I  I  Y  E  F  T  D  K  Y  L  L  </first_frame>
            <second_frame>  I  N  W  S  T  R  R  E  K  V  I  G  E  N  G  K  H  S  N  E  L  I  E  P  K  A  N  F  H  S  G  E  N  I  S  E  R  A  S  I  T  Y  *  I  F  F  F  L  Q  S  C  G  *  W  C  *  E  A  *  D  *  Q  T  L  W :   N  *  W  K  H  G  L  E  R  W  G  *  C  L  R  Q  E  A  Q   : G  K  G  C  V  P  I  C  *  Q  I  W  S  *  C  *  W  I  Q  :  S  H  L  Q  H  G  *  M  V  S  K  W  *  C  L  C  W  R :   Y  H  W  L  S  H  M  G  G  D  L  A  W  H  S  C  R  R  C  S  P  C  L  Q  H  K  C  F  G  A  I  D  V  I  L  V  L  Y  Y  *  V  *  V  V  F  H  V  I  F  S  K  Y  F  L  A  S  S  L  I  C  N  C  C  D  F  T  V  D  N  I  T  S  N  V  A  V  L  G  S  Y  K  S  F  K  F  S  R  D  W  I  A  K  Q  L  *  A  N  P  I  F  *  S  V  R  N  S  C  N  D  L  K  *  Q  *  Y  M  S  S  Q  T  N  I  Y  * </second_frame>
            <third_frame>   *  I  G  A  Q  E  E  K  R  *  *  E  K  M  A  S  T  V  M  S  S  L  S  L  K  P  T  F  T  L  E  K  I  S  V  K  G  L  P  S  L  T  R  S  S  S  S  F  K  V  V  A  S  G  V  K  K  L  K  T  D  K  P  Y   : G  I  N  G  S  M  A  L  R  D  G  V  D  A  S  G  R  K  P  K  :  G  K  G  V  Y  Q  Y  V  D  K  Y  G  A  N  V  D  G  Y  S :   P  I  Y  N  T  D  E  W  S  P  S  G  D  V  Y  V  G   : G  T  T  G  L  A  I  W  A  V  T  L  L  G  I  L  A  G  G  A  L  L  V  Y  N  T  S  A  L  A  Q  *  M  L  S  L  Y  C  T  I  K  F  K  L  Y  S  M  L  S  F  Q  N  I  S  W  H  L  H  *  Y  V  I  A  V  I  L  L  W  I  I  L  H  L  M  L  L  F  *  V  L  I  N  L  L  S  L  V  V  I  G  L  P  N  S  Y  K  L  I  Q  Y  F  E  V  *  G  I  P  A  T  I  S  N  N  N  N  I  *  V  H  R  Q  I  F  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0179K09.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50368" stop="50209"/>
                    <exon start="49596" stop="49538"/>
                    <exon start="49381" stop="49326"/>
                    <exon start="49249" stop="49197"/>
                    <exon start="49085" stop="48991"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKMASTVMSSLSLKPTFTLEKISVKGLPSLTRSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSALAQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="50403" e_stop="50209"/>
            <exon e_start="49596" e_stop="49538"/>
            <exon e_start="49381" e_stop="49326"/>
            <exon e_start="49249" e_stop="49197"/>
            <exon e_start="49085" e_stop="48853"/>
            <exon e_start="48585" e_stop="48563"/>
            <exon e_start="48119" e_stop="48056"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.000" e_score="0.652"/>
          <exon-only e_score="0.469"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50403" e_stop="50209" e_length="195"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49596" e_stop="49538" e_length="59"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.980">
            <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="49381" e_stop="49326" e_length="56"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="49249" e_stop="49197" e_length="53"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="49085" e_stop="48853" e_length="233"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="48852" i_stop="48586" i_length="267"/>
          </intron>
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              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49585" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49585" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49584" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49580" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49573" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49573" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49570" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49569" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49568" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49568" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49568" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49565" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49546" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49545" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49545" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49544" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285747" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49543" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49542" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49378" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49378" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49376" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49355" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49354" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49238" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49226" stop="49197"/>
              <exon start="49085" stop="48868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49065" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49047" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49047" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49031" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226668" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATAAATTGGAGCACAAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG : GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG : GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG : TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG : GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG : AAAGACAAAATATGCAGCAAAGA : AAATCTCTCAATATGTTAATCTAATAACTACGATATAAAAGAATATTATCTTCGTGTATAGGTA</gDNA_template>
            <first_frame> N  K  L  E  H  K  K  R  K  G  N  R  R  K  W  Q  A  Q  *  *  A  H  *  A  *  S  Q  L  S  L  W  R  K  Y  Q  *  K  G  F  H  H  L  L  D  L  L  L  P  S  K  L  W  L  V  V  L  R  S  L  R  L  T  N  P  M  :  E  L  M  E  A  W  P  *  E  M  G  L  M  P  Q  A  G  S  P  R :   E  R  V  C  T  N  M  L  T  N  M  E  L  M  L  M  D  T   : V  P  S  T  T  R  M  N  G  L  Q  V  V  M  S  M  L  E  :  V  P  L  A  *  P  Y  G  R  *  P  C  L  A  F  L  Q  E  V  L  S  L  S  T  T  Q  V  L  W  R  N  R  C  Y  P  C  I  V  L  L  S  L  S  C  I  P  C  Y  L  F  K  I  F  L  G  I  F  I  N  M  *  L  L  *  F  Y  C  G  *  Y  Y  I  *  C  C  C  F  R :   K  T  K  Y  A  A  K   : K  I  S  Q  Y  V  N  L  I  T  T  I  *  K  N  I  I  F  V  Y  R   </first_frame>
            <second_frame>  I  N  W  S  T  R  R  E  K  V  I  G  E  N  G  K  H  S  N  E  L  I  E  P  K  A  N  F  H  S  G  E  N  I  S  E  R  A  S  I  T  Y  *  I  F  F  F  L  Q  S  C  G  *  W  C  *  E  A  *  D  *  Q  T  L  W :   N  *  W  K  H  G  L  E  R  W  G  *  C  L  R  Q  E  A  Q   : G  K  G  C  V  P  I  C  *  Q  I  W  S  *  C  *  W  I  Q  :  S  H  L  Q  H  G  *  M  V  S  K  W  *  C  L  C  W  R :   Y  H  W  L  S  H  M  G  G  D  L  A  W  H  S  C  R  R  C  S  P  C  L  Q  H  K  C  F  G  A  I  D  V  I  L  V  L  Y  Y  *  V  *  V  V  F  H  V  I  F  S  K  Y  F  L  A  S  S  L  I  C  N  C  C  D  F  T  V  D  N  I  T  S  N  V  A  V  L   : E  R  Q  N  M  Q  Q  R  :  K  S  L  N  M  L  I  *  *  L  R  Y  K  R  I  L  S  S  C  I  G  </second_frame>
            <third_frame>   *  I  G  A  Q  E  E  K  R  *  *  E  K  M  A  S  T  V  M  S  S  L  S  L  K  P  T  F  T  L  E  K  I  S  V  K  G  L  P  S  L  T  R  S  S  S  S  F  K  V  V  A  S  G  V  K  K  L  K  T  D  K  P  Y   : G  I  N  G  S  M  A  L  R  D  G  V  D  A  S  G  R  K  P  K  :  G  K  G  V  Y  Q  Y  V  D  K  Y  G  A  N  V  D  G  Y  S :   P  I  Y  N  T  D  E  W  S  P  S  G  D  V  Y  V  G   : G  T  T  G  L  A  I  W  A  V  T  L  L  G  I  L  A  G  G  A  L  L  V  Y  N  T  S  A  L  A  Q  *  M  L  S  L  Y  C  T  I  K  F  K  L  Y  S  M  L  S  F  Q  N  I  S  W  H  L  H  *  Y  V  I  A  V  I  L  L  W  I  I  L  H  L  M  L  L  F  *  :  K  D  K  I  C  S  K  E :   N  L  S  I  C  *  S  N  N  Y  D  I  K  E  Y  Y  L  R  V  *  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0179K09.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50368" stop="50209"/>
                    <exon start="49596" stop="49538"/>
                    <exon start="49381" stop="49326"/>
                    <exon start="49249" stop="49197"/>
                    <exon start="49085" stop="48991"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKMASTVMSSLSLKPTFTLEKISVKGLPSLTRSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSALAQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="50380" e_stop="50209"/>
            <exon e_start="49780" e_stop="49765"/>
            <exon e_start="49596" e_stop="49538"/>
            <exon e_start="49381" e_stop="49326"/>
            <exon e_start="49249" e_stop="49197"/>
            <exon e_start="49085" e_stop="48713"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="0.688"/>
          <exon-intron don_prob="1.000" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50380" e_stop="50209" e_length="172"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="50208" i_stop="49781" i_length="428"/>
          </intron>
          <exon e_serial="2" e_score="0.688">
            <gDNA_exon_boundary e_start="49780" e_stop="49765" e_length="16"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="49764" i_stop="49597" i_length="168"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="49596" e_stop="49538" e_length="59"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.980">
            <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="49381" e_stop="49326" e_length="56"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="49249" e_stop="49197" e_length="53"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="49085" e_stop="48713" e_length="373"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50380" stop="50209"/>
              <exon start="49780" stop="49765"/>
              <exon start="49596" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50351" stop="50209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50345" stop="50209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49594" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49588" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49585" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49585" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49584" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49580" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49580" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49573" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49573" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49570" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49569" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49568" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49568" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49568" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49565" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49564" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49558" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49546" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49545" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49545" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49544" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285747" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49543" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49542" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49378" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49378" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49376" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49373" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49372" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49355" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49354" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49338" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49238" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49226" stop="49197"/>
              <exon start="49085" stop="48868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49085" stop="48846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49065" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49047" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49047" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49031" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226668" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG : TCTCTCAAACTCTTTG : GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG : GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG : TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG : GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGTGTAAGGAATTCCTGCAACGATCTCAAATAACAATAATATATGAGTTCACAGACAAATATTTACTAG</gDNA_template>
            <first_frame> K  R  *  *  E  K  M  A  S  T  V  M  S  S  L  S  L  K  P  T  F  T  L  E  K  I  S  V  K  G  L  P  S  L  T  R  S  S  S  S  F  K  V  V  A  S  G  V  K  K  L  K  T  D  K  P  Y   : V  S  Q  T  L  W :   N  *  W  K  H  G  L  E  R  W  G  *  C  L  R  Q  E  A  Q   : G  K  G  C  V  P  I  C  *  Q  I  W  S  *  C  *  W  I  Q  :  S  H  L  Q  H  G  *  M  V  S  K  W  *  C  L  C  W  R :   Y  H  W  L  S  H  M  G  G  D  L  A  W  H  S  C  R  R  C  S  P  C  L  Q  H  K  C  F  G  A  I  D  V  I  L  V  L  Y  Y  *  V  *  V  V  F  H  V  I  F  S  K  Y  F  L  A  S  S  L  I  C  N  C  C  D  F  T  V  D  N  I  T  S  N  V  A  V  L  G  S  Y  K  S  F  K  F  S  R  D  W  I  A  K  Q  L  *  A  N  P  I  F  *  S  V  R  N  S  C  N  D  L  K  *  Q  *  Y  M  S  S  Q  T  N  I  Y  * </first_frame>
            <second_frame>  K  G  N  R  R  K  W  Q  A  Q  *  *  A  H  *  A  *  S  Q  L  S  L  W  R  K  Y  Q  *  K  G  F  H  H  L  L  D  L  L  L  P  S  K  L  W  L  V  V  L  R  S  L  R  L  T  N  P  M  :  S  L  K  L  F   : G  I  N  G  S  M  A  L  R  D  G  V  D  A  S  G  R  K  P  K  :  G  K  G  V  Y  Q  Y  V  D  K  Y  G  A  N  V  D  G  Y  S :   P  I  Y  N  T  D  E  W  S  P  S  G  D  V  Y  V  G   : G  T  T  G  L  A  I  W  A  V  T  L  L  G  I  L  A  G  G  A  L  L  V  Y  N  T  S  A  L  A  Q  *  M  L  S  L  Y  C  T  I  K  F  K  L  Y  S  M  L  S  F  Q  N  I  S  W  H  L  H  *  Y  V  I  A  V  I  L  L  W  I  I  L  H  L  M  L  L  F  *  V  L  I  N  L  L  S  L  V  V  I  G  L  P  N  S  Y  K  L  I  Q  Y  F  E  V  *  G  I  P  A  T  I  S  N  N  N  N  I  *  V  H  R  Q  I  F  T   </second_frame>
            <third_frame>   K  V  I  G  E  N  G  K  H  S  N  E  L  I  E  P  K  A  N  F  H  S  G  E  N  I  S  E  R  A  S  I  T  Y  *  I  F  F  F  L  Q  S  C  G  *  W  C  *  E  A  *  D  *  Q  T  L  C :   L  S  N  S  L  :  E  L  M  E  A  W  P  *  E  M  G  L  M  P  Q  A  G  S  P  R :   E  R  V  C  T  N  M  L  T  N  M  E  L  M  L  M  D  T   : V  P  S  T  T  R  M  N  G  L  Q  V  V  M  S  M  L  E  :  V  P  L  A  *  P  Y  G  R  *  P  C  L  A  F  L  Q  E  V  L  S  L  S  T  T  Q  V  L  W  R  N  R  C  Y  P  C  I  V  L  L  S  L  S  C  I  P  C  Y  L  F  K  I  F  L  G  I  F  I  N  M  *  L  L  *  F  Y  C  G  *  Y  Y  I  *  C  C  C  F  R  F  L  *  I  F  *  V  *  S  *  L  D  C  Q  T  V  I  S  *  S  N  I  L  K  C  K  E  F  L  Q  R  S  Q  I  T  I  I  Y  E  F  T  D  K  Y  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0179K09.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50295" stop="50209"/>
                    <exon start="49780" stop="49765"/>
                    <exon start="49596" stop="49538"/>
                    <exon start="49381" stop="49326"/>
                    <exon start="49249" stop="49197"/>
                    <exon start="49085" stop="48991"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KGFHHLLDLLLPSKLWLVVLRSLRLTNPMSLKLFGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSALAQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="49391" e_stop="49326"/>
            <exon e_start="49249" e_stop="49197"/>
            <exon e_start="49085" e_stop="48724"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49391" e_stop="49326" e_length="66"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49249" e_stop="49197" e_length="53"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="49085" e_stop="48724" e_length="362"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49391" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49382" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294069" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49378" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49378" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49376" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49373" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49372" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49355" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49354" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49338" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49238" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49226" stop="49197"/>
              <exon start="49085" stop="48868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49085" stop="48846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49065" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49047" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49047" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49031" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226668" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG : TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG : GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGTGTAAGGAATTCCTGCAACGATCTCAAATAACAATAATATATGAGTTCACAGACAA</gDNA_template>
            <first_frame> *  C  L  G  K  G  C  V  P  I  C  *  Q  I  W  S  *  C  *  W  I  Q  :  S  H  L  Q  H  G  *  M  V  S  K  W  *  C  L  C  W  R :   Y  H  W  L  S  H  M  G  G  D  L  A  W  H  S  C  R  R  C  S  P  C  L  Q  H  K  C  F  G  A  I  D  V  I  L  V  L  Y  Y  *  V  *  V  V  F  H  V  I  F  S  K  Y  F  L  A  S  S  L  I  C  N  C  C  D  F  T  V  D  N  I  T  S  N  V  A  V  L  G  S  Y  K  S  F  K  F  S  R  D  W  I  A  K  Q  L  *  A  N  P  I  F  *  S  V  R  N  S  C  N  D  L  K  *  Q  *  Y  M  S  S  Q  T  </first_frame>
            <second_frame>  D  V  *  G  K  G  V  Y  Q  Y  V  D  K  Y  G  A  N  V  D  G  Y  S :   P  I  Y  N  T  D  E  W  S  P  S  G  D  V  Y  V  G   : G  T  T  G  L  A  I  W  A  V  T  L  L  G  I  L  A  G  G  A  L  L  V  Y  N  T  S  A  L  A  Q  *  M  L  S  L  Y  C  T  I  K  F  K  L  Y  S  M  L  S  F  Q  N  I  S  W  H  L  H  *  Y  V  I  A  V  I  L  L  W  I  I  L  H  L  M  L  L  F  *  V  L  I  N  L  L  S  L  V  V  I  G  L  P  N  S  Y  K  L  I  Q  Y  F  E  V  *  G  I  P  A  T  I  S  N  N  N  N  I  *  V  H  R  Q </second_frame>
            <third_frame>   M  F  R  E  R  V  C  T  N  M  L  T  N  M  E  L  M  L  M  D  T   : V  P  S  T  T  R  M  N  G  L  Q  V  V  M  S  M  L  E  :  V  P  L  A  *  P  Y  G  R  *  P  C  L  A  F  L  Q  E  V  L  S  L  S  T  T  Q  V  L  W  R  N  R  C  Y  P  C  I  V  L  L  S  L  S  C  I  P  C  Y  L  F  K  I  F  L  G  I  F  I  N  M  *  L  L  *  F  Y  C  G  *  Y  Y  I  *  C  C  C  F  R  F  L  *  I  F  *  V  *  S  *  L  D  C  Q  T  V  I  S  *  S  N  I  L  K  C  K  E  F  L  Q  R  S  Q  I  T  I  I  Y  E  F  T  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0179K09.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49381" stop="49326"/>
                    <exon start="49249" stop="49197"/>
                    <exon start="49085" stop="48991"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSALAQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="49252" e_stop="49197"/>
            <exon e_start="49085" e_stop="48843"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49252" e_stop="49197" e_length="56"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="49085" e_stop="48843" e_length="243"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49252" stop="49197"/>
              <exon start="49085" stop="48843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49238" stop="49197"/>
              <exon start="49085" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49226" stop="49197"/>
              <exon start="49085" stop="48868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49085" stop="48846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49065" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49047" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49047" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49031" stop="48853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226668" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG : GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAA</gDNA_template>
            <first_frame> Q  S  H  L  Q  H  G  *  M  V  S  K  W  *  C  L  C  W  R :   Y  H  W  L  S  H  M  G  G  D  L  A  W  H  S  C  R  R  C  S  P  C  L  Q  H  K  C  F  G  A  I  D  V  I  L  V  L  Y  Y  *  V  *  V  V  F  H  V  I  F  S  K  Y  F  L  A  S  S  L  I  C  N  C  C  D  F  T  V  D  N  I  T  S  N  V  A  V  L  G  S  Y   </first_frame>
            <second_frame>  S  P  I  Y  N  T  D  E  W  S  P  S  G  D  V  Y  V  G   : G  T  T  G  L  A  I  W  A  V  T  L  L  G  I  L  A  G  G  A  L  L  V  Y  N  T  S  A  L  A  Q  *  M  L  S  L  Y  C  T  I  K  F  K  L  Y  S  M  L  S  F  Q  N  I  S  W  H  L  H  *  Y  V  I  A  V  I  L  L  W  I  I  L  H  L  M  L  L  F  *  V  L  I  </second_frame>
            <third_frame>   V  P  S  T  T  R  M  N  G  L  Q  V  V  M  S  M  L  E  :  V  P  L  A  *  P  Y  G  R  *  P  C  L  A  F  L  Q  E  V  L  S  L  S  T  T  Q  V  L  W  R  N  R  C  Y  P  C  I  V  L  L  S  L  S  C  I  P  C  Y  L  F  K  I  F  L  G  I  F  I  N  M  *  L  L  *  F  Y  C  G  *  Y  Y  I  *  C  C  C  F  R  F  L  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0179K09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="50351" e_stop="50209"/>
            <exon e_start="49596" e_stop="49575"/>
            <exon e_start="49020" e_stop="48863"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50351" e_stop="50209" e_length="143"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49596" e_stop="49575" e_length="22"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="49574" i_stop="49021" i_length="554"/>
          </intron>
          <exon e_serial="3" e_score="0.949">
            <gDNA_exon_boundary e_start="49020" e_stop="48863" e_length="158"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50351" stop="50209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50345" stop="50209"/>
              <exon start="49596" stop="49580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50345" stop="50209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50343" stop="50209"/>
              <exon start="49596" stop="49575"/>
              <exon start="49020" stop="48863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50343" stop="50209"/>
              <exon start="49596" stop="49575"/>
              <exon start="49020" stop="48863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50343" stop="50209"/>
              <exon start="49596" stop="49575"/>
              <exon start="49020" stop="48863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341837" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG : GAATTAATGGAAGCATGGCCTT : GTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTT</gDNA_template>
            <first_frame> S  N  E  L  I  E  P  K  A  N  F  H  S  G  E  N  I  S  E  R  A  S  I  T  Y  *  I  F  F  F  L  Q  S  C  G  *  W  C  *  E  A  *  D  *  Q  T  L  W :   N  *  W  K  H  G  L  :  V  Y  N  T  S  A  L  A  Q  *  M  L  S  L  Y  C  T  I  K  F  K  L  Y  S  M  L  S  F  Q  N  I  S  W  H  L  H  *  Y  V  I  A  V  I  L  L  W  I  I  L  H  L  M   </first_frame>
            <second_frame>  V  M  S  S  L  S  L  K  P  T  F  T  L  E  K  I  S  V  K  G  L  P  S  L  T  R  S  S  S  S  F  K  V  V  A  S  G  V  K  K  L  K  T  D  K  P  Y   : G  I  N  G  S  M  A  L :   S  T  T  Q  V  L  W  R  N  R  C  Y  P  C  I  V  L  L  S  L  S  C  I  P  C  Y  L  F  K  I  F  L  G  I  F  I  N  M  *  L  L  *  F  Y  C  G  *  Y  Y  I  *  C  </second_frame>
            <third_frame>   *  *  A  H  *  A  *  S  Q  L  S  L  W  R  K  Y  Q  *  K  G  F  H  H  L  L  D  L  L  L  P  S  K  L  W  L  V  V  L  R  S  L  R  L  T  N  P  M  :  E  L  M  E  A  W  P   : C  L  Q  H  K  C  F  G  A  I  D  V  I  L  V  L  Y  Y  *  V  *  V  V  F  H  V  I  F  S  K  Y  F  L  A  S  S  L  I  C  N  C  C  D  F  T  V  D  N  I  T  S  N  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0179K09.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50350" stop="50209"/>
                    <exon start="49596" stop="49575"/>
                    <exon start="49020" stop="48903"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VMSSLSLKPTFTLEKISVKGLPSLTRSSSSFKVVASGVKKLKTDKPYGINGSMALSTTQVLWRNRCYPCIVLLSLSCIPCYLFKIFLGIFINM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="53918" PGL_stop="52380"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53918" e_stop="53221"/>
            <exon e_start="53124" e_stop="52940"/>
            <exon e_start="52736" e_stop="52380"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.527" acc_prob="0.985" e_score="0.934"/>
          <exon-intron don_prob="0.985" acc_prob="0.896" e_score="1.000"/>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="53918" e_stop="53221" e_length="698"/>
          </exon>
          <intron i_serial="1" don_prob="0.527" acc_prob="0.985">
            <gDNA_intron_boundary i_start="53220" i_stop="53125" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53124" e_stop="52940" e_length="185"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.896">
            <gDNA_intron_boundary i_start="52939" i_stop="52737" i_length="203"/>
          </intron>
          <exon e_serial="3" e_score="0.950">
            <gDNA_exon_boundary e_start="52736" e_stop="52380" e_length="357"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53918" stop="53221"/>
              <exon start="53124" stop="53096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53918" stop="53410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53361" stop="53221"/>
              <exon start="53124" stop="52940"/>
              <exon start="52736" stop="52380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379596" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGTTGCCTCTGTATCTTCTTTTTTTTCCTTGGTAAAGATATTTATTAAAAATGGTATCAAGATGGCACAGAAAAGACTACATGACCTAAACTACACCACTCGCTCCAAACATACTACATATTTTCCCCTAATAAGTTTAAAAAACCCACTTCCATCACCTCCAACGGAAAGAGGAATTTTATCCATCAAAGAAAACCAAAAATCCAGCAAGTGTCTAGTAAATGGAGCAAAGAAAGAGCATCCCCATAACTTAACCATCCTATCAAGAGTACAACTATTAGTACAAACATACAAATTCTTGATGCATTTGTTTCTGACTCTGGGTATCTGCAGCCTCCGTATCTCCTTTTAGACCCATTTTATTCCAAGCTGACGTGATGTGTAGTGGAAGTTTCCTAACAGATTCAACCTTTTAGGAGATTCATCATAGCTAGATGGTTTTCATGATGCTGCTCTACCTACCTGTACATTTCCTTTAATGCATGCTTTCAATGATGTCAAAACTACAGCAATTGCTCCATCCTAGGTGGGGGGGGGGGGGGGGGGGGAGCTCTAAAATGGTTTCCTTTCTCTTGCTTCCTATTCTTTCTTCTTTGTGTTGGTGGGTGGTTTAGGAGGTGAAGGGGAGCAGCGTGGTTGAGACCGAGACTATCAGGTGGCTAAGTTTCCTTGTGGTGGTCTTGATTCTTCATCAAG : GTGGCAAAGATAGTTTGGCTCTAAAAATAGATACGGTACTGGCCTTCTGTGATGAAATGTGCTTGAAGGACAGAGCTTCTATCCAAGAAGACGGCAATCCACATCACAAAGAGTTTGGCTTGATTCAACCAATGAGCGGAAGGAGATTGTCCAAAGCTGTACACACTCCATGATGTGCGTGCCAG : GTGGATTTCATGCTGGAGTTACTGTAAATAGGGTTGGATTTGTACATTTTTGCGAGAGTGATCTGCATTCCAGCCCCCTCTGAAGCACAGGAGTCAGCTGCATTTCAAATGATTACCCAATTACAGACTATGGCAGACCACACCCATTACATTTAATGATGGCAAAGAAACAGCAACACCAATATTTTTGAATCCTATTAATGGCTACCATACCATAGTACTGTATTAGTTTCATTACTTTCCAGAAGCAACTGTTATGTGTGTCTTTGAGCTGAATTTGTTGTCTTAGAATATTAGTTGGTTGCAACCCGTATCAGTGCTTTGAACATTTATCAAGGCCAAATACATACGGTGCCT</gDNA_template>
            <first_frame> L  V  A  S  V  S  S  F  F  S  L  V  K  I  F  I  K  N  G  I  K  M  A  Q  K  R  L  H  D  L  N  Y  T  T  R  S  K  H  T  T  Y  F  P  L  I  S  L  K  N  P  L  P  S  P  P  T  E  R  G  I  L  S  I  K  E  N  Q  K  S  S  K  C  L  V  N  G  A  K  K  E  H  P  H  N  L  T  I  L  S  R  V  Q  L  L  V  Q  T  Y  K  F  L  M  H  L  F  L  T  L  G  I  C  S  L  R  I  S  F  *  T  H  F  I  P  S  *  R  D  V  *  W  K  F  P  N  R  F  N  L  L  G  D  S  S  *  L  D  G  F  H  D  A  A  L  P  T  C  T  F  P  L  M  H  A  F  N  D  V  K  T  T  A  I  A  P  S  *  V  G  G  G  G  G  G  E  L  *  N  G  F  L  S  L  A  S  Y  S  F  F  F  V  L  V  G  G  L  G  G  E  G  E  Q  R  G  *  D  R  D  Y  Q  V  A  K  F  P  C  G  G  L  D  S  S  S  R :   W  Q  R  *  F  G  S  K  N  R  Y  G  T  G  L  L  *  *  N  V  L  E  G  Q  S  F  Y  P  R  R  R  Q  S  T  S  Q  R  V  W  L  D  S  T  N  E  R  K  E  I  V  Q  S  C  T  H  S  M  M  C  V  P   : G  G  F  H  A  G  V  T  V  N  R  V  G  F  V  H  F  C  E  S  D  L  H  S  S  P  L  *  S  T  G  V  S  C  I  S  N  D  Y  P  I  T  D  Y  G  R  P  H  P  L  H  L  M  M  A  K  K  Q  Q  H  Q  Y  F  *  I  L  L  M  A  T  I  P  *  Y  C  I  S  F  I  T  F  Q  K  Q  L  L  C  V  S  L  S  *  I  C  C  L  R  I  L  V  G  C  N  P  Y  Q  C  F  E  H  L  S  R  P  N  T  Y  G  A  </first_frame>
            <second_frame>  *  L  P  L  Y  L  L  F  F  P  W  *  R  Y  L  L  K  M  V  S  R  W  H  R  K  D  Y  M  T  *  T  T  P  L  A  P  N  I  L  H  I  F  P  *  *  V  *  K  T  H  F  H  H  L  Q  R  K  E  E  F  Y  P  S  K  K  T  K  N  P  A  S  V  *  *  M  E  Q  R  K  S  I  P  I  T  *  P  S  Y  Q  E  Y  N  Y  *  Y  K  H  T  N  S  *  C  I  C  F  *  L  W  V  S  A  A  S  V  S  P  F  R  P  I  L  F  Q  A  D  V  M  C  S  G  S  F  L  T  D  S  T  F  *  E  I  H  H  S  *  M  V  F  M  M  L  L  Y  L  P  V  H  F  L  *  C  M  L  S  M  M  S  K  L  Q  Q  L  L  H  P  R  W  G  G  G  G  G  G  S  S  K  M  V  S  F  L  L  L  P  I  L  S  S  L  C  W  W  V  V  *  E  V  K  G  S  S  V  V  E  T  E  T  I  R  W  L  S  F  L  V  V  V  L  I  L  H  Q   : G  G  K  D  S  L  A  L  K  I  D  T  V  L  A  F  C  D  E  M  C  L  K  D  R  A  S  I  Q  E  D  G  N  P  H  H  K  E  F  G  L  I  Q  P  M  S  G  R  R  L  S  K  A  V  H  T  P  *  C  A  C  Q  :  V  D  F  M  L  E  L  L  *  I  G  L  D  L  Y  I  F  A  R  V  I  C  I  P  A  P  S  E  A  Q  E  S  A  A  F  Q  M  I  T  Q  L  Q  T  M  A  D  H  T  H  Y  I  *  *  W  Q  R  N  S  N  T  N  I  F  E  S  Y  *  W  L  P  Y  H  S  T  V  L  V  S  L  L  S  R  S  N  C  Y  V  C  L  *  A  E  F  V  V  L  E  Y  *  L  V  A  T  R  I  S  A  L  N  I  Y  Q  G  Q  I  H  T  V  P </second_frame>
            <third_frame>   S  C  L  C  I  F  F  F  F  L  G  K  D  I  Y  *  K  W  Y  Q  D  G  T  E  K  T  T  *  P  K  L  H  H  S  L  Q  T  Y  Y  I  F  S  P  N  K  F  K  K  P  T  S  I  T  S  N  G  K  R  N  F  I  H  Q  R  K  P  K  I  Q  Q  V  S  S  K  W  S  K  E  R  A  S  P  *  L  N  H  P  I  K  S  T  T  I  S  T  N  I  Q  I  L  D  A  F  V  S  D  S  G  Y  L  Q  P  P  Y  L  L  L  D  P  F  Y  S  K  L  T  *  C  V  V  E  V  S  *  Q  I  Q  P  F  R  R  F  I  I  A  R  W  F  S  *  C  C  S  T  Y  L  Y  I  S  F  N  A  C  F  Q  *  C  Q  N  Y  S  N  C  S  I  L  G  G  G  G  G  G  G  G  A  L  K  W  F  P  F  S  C  F  L  F  F  L  L  C  V  G  G  W  F  R  R  *  R  G  A  A  W  L  R  P  R  L  S  G  G  *  V  S  L  W  W  S  *  F  F  I  K  :  V  A  K  I  V  W  L  *  K  *  I  R  Y  W  P  S  V  M  K  C  A  *  R  T  E  L  L  S  K  K  T  A  I  H  I  T  K  S  L  A  *  F  N  Q  *  A  E  G  D  C  P  K  L  Y  T  L  H  D  V  R  A  R :   W  I  S  C  W  S  Y  C  K  *  G  W  I  C  T  F  L  R  E  *  S  A  F  Q  P  P  L  K  H  R  S  Q  L  H  F  K  *  L  P  N  Y  R  L  W  Q  T  T  P  I  T  F  N  D  G  K  E  T  A  T  P  I  F  L  N  P  I  N  G  Y  H  T  I  V  L  Y  *  F  H  Y  F  P  E  A  T  V  M  C  V  F  E  L  N  L  L  S  *  N  I  S  W  L  Q  P  V  S  V  L  *  T  F  I  K  A  K  Y  I  R  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0179K09.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53918" stop="53565"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVASVSSFFSLVKIFIKNGIKMAQKRLHDLNYTTRSKHTTYFPLISLKNPLPSPPTERGILSIKENQKSSKCLVNGAKKEHPHNLTILSRVQLLVQTYKFLMHLFLTLGICSLRISF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0179K09.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53302" stop="53221"/>
                    <exon start="53124" stop="52952"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVKGSSVVETETIRWLSFLVVVLILHQGGKDSLALKIDTVLAFCDEMCLKDRASIQEDGNPHHKEFGLIQPMSGRRLSKAVHTP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="71492" PGL_stop="72086"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71492" e_stop="72086"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="71492" e_stop="72086" e_length="595"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71492" stop="72086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71492" stop="72042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71492" stop="72005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411185" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAAATGATAGAGAAGAGGTGAAGAAGAAGAAGAATCAAGATTTGTTTGCAATACACTCTGTTTTCCCTGTTTTTCTAACCACTAGACGGTTGTGTTTTAACTGATTTTCTTAATGGTCATTGTAACCCAGTTAAAGATGGAAACTTTGTGATTGTTCAAGTCAAAAAAGTGCGAGTCTTGTGTCTATATTTATTGGGGATTGCTTTTTTGGAAACGTACATGTGAAGCAAATTACTGTGTTTTTTTTTGTTTTTTGTCTTTTTGGTTTCTTATCTCATCTAACAACTGCCACTCTCCATTTATTACTGCGTGAAGATGGAATCTTCTGGATCTTGTCTTTACTTGTTTTTGCTACTTGGGTGTTTGGATTTGACGAATTTATGATCTGGGTTTTGTTTTATATGACACAAAAGGGGGTTCTTTAGTGAGATTAGCAGATAATGACTGTTATTCATGATATGGTGATTTCACAGGTTTGGTCAAATGAGTTGTTCTCATATCAAAAGGATGGGTACCAATAGCAATTTTTGGTAATTTGGGGTTTGGGTGTTGTAGTTCTGTTCAGTTAGGTGTGTAAATTTAGTTTAGTAATG</gDNA_template>
            <first_frame> K  K  *  *  R  R  G  E  E  E  E  E  S  R  F  V  C  N  T  L  C  F  P  C  F  S  N  H  *  T  V  V  F  *  L  I  F  L  M  V  I  V  T  Q  L  K  M  E  T  L  *  L  F  K  S  K  K  C  E  S  C  V  Y  I  Y  W  G  L  L  F  W  K  R  T  C  E  A  N  Y  C  V  F  F  C  F  L  S  F  W  F  L  I  S  S  N  N  C  H  S  P  F  I  T  A  *  R  W  N  L  L  D  L  V  F  T  C  F  C  Y  L  G  V  W  I  *  R  I  Y  D  L  G  F  V  L  Y  D  T  K  G  G  S  L  V  R  L  A  D  N  D  C  Y  S  *  Y  G  D  F  T  G  L  V  K  *  V  V  L  I  S  K  G  W  V  P  I  A  I  F  G  N  L  G  F  G  C  C  S  S  V  Q  L  G  V  *  I  *  F  S  N  </first_frame>
            <second_frame>  R  N  D  R  E  E  V  K  K  K  K  N  Q  D  L  F  A  I  H  S  V  F  P  V  F  L  T  T  R  R  L  C  F  N  *  F  S  *  W  S  L  *  P  S  *  R  W  K  L  C  D  C  S  S  Q  K  S  A  S  L  V  S  I  F  I  G  D  C  F  F  G  N  V  H  V  K  Q  I  T  V  F  F  F  V  F  C  L  F  G  F  L  S  H  L  T  T  A  T  L  H  L  L  L  R  E  D  G  I  F  W  I  L  S  L  L  V  F  A  T  W  V  F  G  F  D  E  F  M  I  W  V  L  F  Y  M  T  Q  K  G  V  L  *  *  D  *  Q  I  M  T  V  I  H  D  M  V  I  S  Q  V  W  S  N  E  L  F  S  Y  Q  K  D  G  Y  Q  *  Q  F  L  V  I  W  G  L  G  V  V  V  L  F  S  *  V  C  K  F  S  L  V  M </second_frame>
            <third_frame>   E  M  I  E  K  R  *  R  R  R  R  I  K  I  C  L  Q  Y  T  L  F  S  L  F  F  *  P  L  D  G  C  V  L  T  D  F  L  N  G  H  C  N  P  V  K  D  G  N  F  V  I  V  Q  V  K  K  V  R  V  L  C  L  Y  L  L  G  I  A  F  L  E  T  Y  M  *  S  K  L  L  C  F  F  L  F  F  V  F  L  V  S  Y  L  I  *  Q  L  P  L  S  I  Y  Y  C  V  K  M  E  S  S  G  S  C  L  Y  L  F  L  L  L  G  C  L  D  L  T  N  L  *  S  G  F  C  F  I  *  H  K  R  G  F  F  S  E  I  S  R  *  *  L  L  F  M  I  W  *  F  H  R  F  G  Q  M  S  C  S  H  I  K  R  M  G  T  N  S  N  F  W  *  F  G  V  W  V  L  *  F  C  S  V  R  C  V  N  L  V  *  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0179K09.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71628" stop="71918"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RWKLCDCSSQKSASLVSIFIGDCFFGNVHVKQITVFFFVFCLFGFLSHLTTATLHLLLREDGIFWILSLLVFATWVFGFDEFMIWVLFYMTQKGVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="74338" PGL_stop="78082"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74338" e_stop="74647"/>
            <exon e_start="75009" e_stop="75089"/>
            <exon e_start="75215" e_stop="75313"/>
            <exon e_start="75895" e_stop="76008"/>
            <exon e_start="76102" e_stop="76185"/>
            <exon e_start="77051" e_stop="77122"/>
            <exon e_start="77203" e_stop="78082"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.891" acc_prob="0.972" e_score="0.986"/>
          <exon-intron don_prob="0.979" acc_prob="0.993" e_score="0.988"/>
          <exon-intron don_prob="0.952" acc_prob="0.992" e_score="0.990"/>
          <exon-intron don_prob="0.201" acc_prob="0.995" e_score="0.991"/>
          <exon-intron don_prob="0.983" acc_prob="0.996" e_score="0.964"/>
          <exon-intron don_prob="0.745" acc_prob="0.985" e_score="0.984"/>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="74338" e_stop="74647" e_length="310"/>
          </exon>
          <intron i_serial="1" don_prob="0.891" acc_prob="0.972">
            <gDNA_intron_boundary i_start="74648" i_stop="75008" i_length="361"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="75009" e_stop="75089" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.993">
            <gDNA_intron_boundary i_start="75090" i_stop="75214" i_length="125"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="75215" e_stop="75313" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="0.952" acc_prob="0.992">
            <gDNA_intron_boundary i_start="75314" i_stop="75894" i_length="581"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="75895" e_stop="76008" e_length="114"/>
          </exon>
          <intron i_serial="4" don_prob="0.201" acc_prob="0.995">
            <gDNA_intron_boundary i_start="76009" i_stop="76101" i_length="93"/>
          </intron>
          <exon e_serial="5" e_score="0.964">
            <gDNA_exon_boundary e_start="76102" e_stop="76185" e_length="84"/>
          </exon>
          <intron i_serial="5" don_prob="0.983" acc_prob="0.996">
            <gDNA_intron_boundary i_start="76186" i_stop="77050" i_length="865"/>
          </intron>
          <exon e_serial="6" e_score="0.984">
            <gDNA_exon_boundary e_start="77051" e_stop="77122" e_length="72"/>
          </exon>
          <intron i_serial="6" don_prob="0.745" acc_prob="0.985">
            <gDNA_intron_boundary i_start="77123" i_stop="77202" i_length="80"/>
          </intron>
          <exon e_serial="7" e_score="0.958">
            <gDNA_exon_boundary e_start="77203" e_stop="78082" e_length="880"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74338" stop="74647"/>
              <exon start="75009" stop="75089"/>
              <exon start="75215" stop="75313"/>
              <exon start="75895" stop="76008"/>
              <exon start="76102" stop="76143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74354" stop="74647"/>
              <exon start="75009" stop="75089"/>
              <exon start="75215" stop="75313"/>
              <exon start="75895" stop="76008"/>
              <exon start="76102" stop="76185"/>
              <exon start="77051" stop="77081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74354" stop="74647"/>
              <exon start="75009" stop="75089"/>
              <exon start="75215" stop="75297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74438" stop="74647"/>
              <exon start="75009" stop="75089"/>
              <exon start="75215" stop="75313"/>
              <exon start="75895" stop="76008"/>
              <exon start="76102" stop="76185"/>
              <exon start="77051" stop="77122"/>
              <exon start="77203" stop="77250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74438" stop="74647"/>
              <exon start="75009" stop="75089"/>
              <exon start="75215" stop="75313"/>
              <exon start="75895" stop="75956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E583193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77061" stop="77122"/>
              <exon start="77203" stop="77893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77509" stop="78082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557281" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77576" stop="78082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561566" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77675" stop="78023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E593813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77734" stop="77977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744458" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGAAACATTTACTGAGGATGACTTCTCCACAGATTATGAGTCATCAGTTCCTCTGGATGAACCTGAAAAGGTTGAAAAAGTTGAAAAGGTTCACGCTTGCAAAACATTCAGCGACGCTGCTTCTACTTCTACTTCATCAGTTGTAACCAAACAGATAGAACCCCCAGCTAAGCCAGTAGTTAGAGAAGATGCAAGTTCAATAATTGAGATGAAGCGGATATTAGATAGTGCGGATCATTATGAAGCACTAGGGGTTTCTCGGCATAAGAAAATTGACACTTTACTGTTGAAAAAAGAATATCGTAAAAAG : GCAATGCTTGTGCACCCGGACAAAAACATGGGAAGTTCACTTGCCAGTGAATCATTTAAGAAACTTCAATGTGGATATGAG : GTTCTTTCTGATGCTGTCAAGAAGCGAGACTATGATGAGCAACTCAGAAAGGAAGAATCTAAGAGTGTACTGCAAAAATCACCTAGCACGTCCAACCAG : GAATCCTCCAACTACTGCTCAGAAGAGTCAAGGCGTATCCACTGCACAAAATGTGGCAACTCACACATTTGGATCTGCACCAATAGGACAAAGGTCAAGGCAAGATGGTGCCAG : GATTGTTGTCAATATCACCAAGCCAAAGATGGGGATGGATGGGTAGAATACAAAGGATCATTGGTTTTCAATCGACCACAAAAG : GCGGAGATACCTCGTGCTTTCGTTTGTGCTGAAGGCAAGATATTTGATGTGTCGGAATGGGCCATATGTCAG : GGCATGGCTTGTAGACCAAATACACATAGACCGAGTTTCCATGTGAACATGGTTGGATTAGAGAAATCATCCCAGAGATCCAATTCAAGTAGGTACCCCTGGGATTTTGATGCTGAGATGACAGATGAAGATGAAGAATTCGAGCTGTGGCTCCAGCAAGCTCTAGCATCTGGACTTTTTTGTGAGACGCCAAAGCGGAGAAAAACTTGGAGTCCTTTCAAGTTGAATCAGATGAAAGGAAAGAAGCAATGGAGAAGGTCTTCATGAGTTACATGCATCATAATCGGTTACGATGCTCAGATGCCATTTTTGTGATGATTCAACATCCACTGCCCCCTAAAATCAGGACAAAATGAAAAACGAGGATAAAAAGACATGATGTGATATCTTAAGGTTTCATATGCATCAACATGGAGATGACCAAACTTCTCATCAGGGGAGAGCTCATCTGTTGGTTTGGCTAAACAAGTATAAATGTGCTGGTTAGCTGATCCATTTGTATATATCATCCTAATTATCCGGCTTGCTTACAACCACCCTTTCCAGACTATGTGGGATTACACTAAGATATGTTGTATCCTAATTATCCAGCAGCATTTATCTATTGCAACGCCAAGTTTTGAGTTAGATCCTTTGAATTGATTAGGAGGAACAAAACTGAGCAAATCTTTGTACATCTGATGATCCTGCCTGGACTTGGACTACTTGAGGTGTAATAAATTTCAGAGAAAAAAAATTGTACTCTTCTGTGCAATGCAGTTGTAGGACAATTCATACTGTTGATCCTGCTCATTCCACATATTTAAACACGAGATCTACATTCTTTCCTTCTAATACCTTTATGTGAAGTTAGTGGATTTGGACACAGCGAGAGTTTAGT</gDNA_template>
            <first_frame> R  N  I  Y  *  G  *  L  L  H  R  L  *  V  I  S  S  S  G  *  T  *  K  G  *  K  S  *  K  G  S  R  L  Q  N  I  Q  R  R  C  F  Y  F  Y  F  I  S  C  N  Q  T  D  R  T  P  S  *  A  S  S  *  R  R  C  K  F  N  N  *  D  E  A  D  I  R  *  C  G  S  L  *  S  T  R  G  F  S  A  *  E  N  *  H  F  T  V  E  K  R  I  S  *  K   : G  N  A  C  A  P  G  Q  K  H  G  K  F  T  C  Q  *  I  I  *  E  T  S  M  W  I  *   : G  S  F  *  C  C  Q  E  A  R  L  *  *  A  T  Q  K  G  R  I  *  E  C  T  A  K  I  T  *  H  V  Q  P   : G  I  L  Q  L  L  L  R  R  V  K  A  Y  P  L  H  K  M  W  Q  L  T  H  L  D  L  H  Q  *  D  K  G  Q  G  K  M  V  P   : G  L  L  S  I  S  P  S  Q  R  W  G  W  M  G  R  I  Q  R  I  I  G  F  Q  S  T  T  K   : G  G  D  T  S  C  F  R  L  C  *  R  Q  D  I  *  C  V  G  M  G  H  M  S   : G  H  G  L  *  T  K  Y  T  *  T  E  F  P  C  E  H  G  W  I  R  E  I  I  P  E  I  Q  F  K  *  V  P  L  G  F  *  C  *  D  D  R  *  R  *  R  I  R  A  V  A  P  A  S  S  S  I  W  T  F  L  *  D  A  K  A  E  K  N  L  E  S  F  Q  V  E  S  D  E  R  K  E  A  M  E  K  V  F  M  S  Y  M  H  H  N  R  L  R  C  S  D  A  I  F  V  M  I  Q  H  P  L  P  P  K  I  R  T  K  *  K  T  R  I  K  R  H  D  V  I  S  *  G  F  I  C  I  N  M  E  M  T  K  L  L  I  R  G  E  L  I  C  W  F  G  *  T  S  I  N  V  L  V  S  *  S  I  C  I  Y  H  P  N  Y  P  A  C  L  Q  P  P  F  P  D  Y  V  G  L  H  *  D  M  L  Y  P  N  Y  P  A  A  F  I  Y  C  N  A  K  F  *  V  R  S  F  E  L  I  R  R  N  K  T  E  Q  I  F  V  H  L  M  I  L  P  G  L  G  L  L  E  V  *  *  I  S  E  K  K  N  C  T  L  L  C  N  A  V  V  G  Q  F  I  L  L  I  L  L  I  P  H  I  *  T  R  D  L  H  S  F  L  L  I  P  L  C  E  V  S  G  F  G  H  S  E  S  L   </first_frame>
            <second_frame>  E  T  F  T  E  D  D  F  S  T  D  Y  E  S  S  V  P  L  D  E  P  E  K  V  E  K  V  E  K  V  H  A  C  K  T  F  S  D  A  A  S  T  S  T  S  S  V  V  T  K  Q  I  E  P  P  A  K  P  V  V  R  E  D  A  S  S  I  I  E  M  K  R  I  L  D  S  A  D  H  Y  E  A  L  G  V  S  R  H  K  K  I  D  T  L  L  L  K  K  E  Y  R  K  K  :  A  M  L  V  H  P  D  K  N  M  G  S  S  L  A  S  E  S  F  K  K  L  Q  C  G  Y  E  :  V  L  S  D  A  V  K  K  R  D  Y  D  E  Q  L  R  K  E  E  S  K  S  V  L  Q  K  S  P  S  T  S  N  Q  :  E  S  S  N  Y  C  S  E  E  S  R  R  I  H  C  T  K  C  G  N  S  H  I  W  I  C  T  N  R  T  K  V  K  A  R  W  C  Q  :  D  C  C  Q  Y  H  Q  A  K  D  G  D  G  W  V  E  Y  K  G  S  L  V  F  N  R  P  Q  K  :  A  E  I  P  R  A  F  V  C  A  E  G  K  I  F  D  V  S  E  W  A  I  C  Q  :  G  M  A  C  R  P  N  T  H  R  P  S  F  H  V  N  M  V  G  L  E  K  S  S  Q  R  S  N  S  S  R  Y  P  W  D  F  D  A  E  M  T  D  E  D  E  E  F  E  L  W  L  Q  Q  A  L  A  S  G  L  F  C  E  T  P  K  R  R  K  T  W  S  P  F  K  L  N  Q  M  K  G  K  K  Q  W  R  R  S  S  *  V  T  C  I  I  I  G  Y  D  A  Q  M  P  F  L  *  *  F  N  I  H  C  P  L  K  S  G  Q  N  E  K  R  G  *  K  D  M  M  *  Y  L  K  V  S  Y  A  S  T  W  R  *  P  N  F  S  S  G  E  S  S  S  V  G  L  A  K  Q  V  *  M  C  W  L  A  D  P  F  V  Y  I  I  L  I  I  R  L  A  Y  N  H  P  F  Q  T  M  W  D  Y  T  K  I  C  C  I  L  I  I  Q  Q  H  L  S  I  A  T  P  S  F  E  L  D  P  L  N  *  L  G  G  T  K  L  S  K  S  L  Y  I  *  *  S  C  L  D  L  D  Y  L  R  C  N  K  F  Q  R  K  K  I  V  L  F  C  A  M  Q  L  *  D  N  S  Y  C  *  S  C  S  F  H  I  F  K  H  E  I  Y  I  L  S  F  *  Y  L  Y  V  K  L  V  D  L  D  T  A  R  V  *  </second_frame>
            <third_frame>   K  H  L  L  R  M  T  S  P  Q  I  M  S  H  Q  F  L  W  M  N  L  K  R  L  K  K  L  K  R  F  T  L  A  K  H  S  A  T  L  L  L  L  L  L  H  Q  L  *  P  N  R  *  N  P  Q  L  S  Q  *  L  E  K  M  Q  V  Q  *  L  R  *  S  G  Y  *  I  V  R  I  I  M  K  H  *  G  F  L  G  I  R  K  L  T  L  Y  C  *  K  K  N  I  V  K  R :   Q  C  L  C  T  R  T  K  T  W  E  V  H  L  P  V  N  H  L  R  N  F  N  V  D  M  R :   F  F  L  M  L  S  R  S  E  T  M  M  S  N  S  E  R  K  N  L  R  V  Y  C  K  N  H  L  A  R  P  T  R :   N  P  P  T  T  A  Q  K  S  Q  G  V  S  T  A  Q  N  V  A  T  H  T  F  G  S  A  P  I  G  Q  R  S  R  Q  D  G  A  R :   I  V  V  N  I  T  K  P  K  M  G  M  D  G  *  N  T  K  D  H  W  F  S  I  D  H  K  R :   R  R  Y  L  V  L  S  F  V  L  K  A  R  Y  L  M  C  R  N  G  P  Y  V  R :   A  W  L  V  D  Q  I  H  I  D  R  V  S  M  *  T  W  L  D  *  R  N  H  P  R  D  P  I  Q  V  G  T  P  G  I  L  M  L  R  *  Q  M  K  M  K  N  S  S  C  G  S  S  K  L  *  H  L  D  F  F  V  R  R  Q  S  G  E  K  L  G  V  L  S  S  *  I  R  *  K  E  R  S  N  G  E  G  L  H  E  L  H  A  S  *  S  V  T  M  L  R  C  H  F  C  D  D  S  T  S  T  A  P  *  N  Q  D  K  M  K  N  E  D  K  K  T  *  C  D  I  L  R  F  H  M  H  Q  H  G  D  D  Q  T  S  H  Q  G  R  A  H  L  L  V  W  L  N  K  Y  K  C  A  G  *  L  I  H  L  Y  I  S  S  *  L  S  G  L  L  T  T  T  L  S  R  L  C  G  I  T  L  R  Y  V  V  S  *  L  S  S  S  I  Y  L  L  Q  R  Q  V  L  S  *  I  L  *  I  D  *  E  E  Q  N  *  A  N  L  C  T  S  D  D  P  A  W  T  W  T  T  *  G  V  I  N  F  R  E  K  K  L  Y  S  S  V  Q  C  S  C  R  T  I  H  T  V  D  P  A  H  S  T  Y  L  N  T  R  S  T  F  F  P  S  N  T  F  M  *  S  *  W  I  W  T  Q  R  E  F  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0179K09.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74339" stop="74647"/>
                    <exon start="75009" stop="75089"/>
                    <exon start="75215" stop="75313"/>
                    <exon start="75895" stop="76008"/>
                    <exon start="76102" stop="76185"/>
                    <exon start="77051" stop="77122"/>
                    <exon start="77203" stop="77469"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1023</number_coding_nucleotides>
                  <number_encoded_amino_acids>341</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ETFTEDDFSTDYESSVPLDEPEKVEKVEKVHACKTFSDAASTSTSSVVTKQIEPPAKPVVREDASSIIEMKRILDSADHYEALGVSRHKKIDTLLLKKEYRKKAMLVHPDKNMGSSLASESFKKLQCGYEVLSDAVKKRDYDEQLRKEESKSVLQKSPSTSNQESSNYCSEESRRIHCTKCGNSHIWICTNRTKVKARWCQDCCQYHQAKDGDGWVEYKGSLVFNRPQKAEIPRAFVCAEGKIFDVSEWAICQGMACRPNTHRPSFHVNMVGLEKSSQRSNSSRYPWDFDAEMTDEDEEFELWLQQALASGLFCETPKRRKTWSPFKLNQMKGKKQWRRSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="78023" PGL_stop="77379"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78023" e_stop="77379"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="78023" e_stop="77379" e_length="645"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78023" stop="77379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78015" stop="77442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78004" stop="77827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77933" stop="77416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570224" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGTAGATCTCGTGTTTAAATATGTGGAATGAGCAGGATCAACAGTATGAATTGTCCTACAACTGCATTGCACAGAAGAGTACAATTTTTTTTCTCTGAAATTTATTACACCTCAAGTAGTCCAAGTCCAGGCAGGATCATCAGATGTACAAAGATTTGCTCAGTTTTGTTCCTCCTAATCAATTCAAAGGATCTAACTCAAAACTTGGCGTTGCAATAGATAAATGCTGCTGGATAATTAGGATACAACATATCTTAGTGTAATCCCACATAGTCTGGAAAGGGTGGTTGTAAGCAAGCCGGATAATTAGGATGATATATACAAATGGATCAGCTAACCAGCACATTTATACTTGTTTAGCCAAACCAACAGATGAGCTCTCCCCTGATGAGAAGTTTGGTCATCTCCATGTTGATGCATATGAAACCTTAAGATATCACATCATGTCTTTTTATCCTCGTTTTTCATTTTGTCCTGATTTTAGGGGGCAGTGGATGTTGAATCATCACAAAAATGGCATCTGAGCATCGTAACCGATTATGATGCATGTAACTCATGAAGACCTTCTCCATTGCTTCTTTCCTTTCATCTGATTCAACTTGAAAGGACTCCAAGTTTTTCTCCGCTTTGGCGTCTCACAAAAA</gDNA_template>
            <first_frame> M  *  I  S  C  L  N  M  W  N  E  Q  D  Q  Q  Y  E  L  S  Y  N  C  I  A  Q  K  S  T  I  F  F  L  *  N  L  L  H  L  K  *  S  K  S  R  Q  D  H  Q  M  Y  K  D  L  L  S  F  V  P  P  N  Q  F  K  G  S  N  S  K  L  G  V  A  I  D  K  C  C  W  I  I  R  I  Q  H  I  L  V  *  S  H  I  V  W  K  G  W  L  *  A  S  R  I  I  R  M  I  Y  T  N  G  S  A  N  Q  H  I  Y  T  C  L  A  K  P  T  D  E  L  S  P  D  E  K  F  G  H  L  H  V  D  A  Y  E  T  L  R  Y  H  I  M  S  F  Y  P  R  F  S  F  C  P  D  F  R  G  Q  W  M  L  N  H  H  K  N  G  I  *  A  S  *  P  I  M  M  H  V  T  H  E  D  L  L  H  C  F  F  P  F  I  *  F  N  L  K  G  L  Q  V  F  L  R  F  G  V  S  Q  K </first_frame>
            <second_frame>  C  R  S  R  V  *  I  C  G  M  S  R  I  N  S  M  N  C  P  T  T  A  L  H  R  R  V  Q  F  F  F  S  E  I  Y  Y  T  S  S  S  P  S  P  G  R  I  I  R  C  T  K  I  C  S  V  L  F  L  L  I  N  S  K  D  L  T  Q  N  L  A  L  Q  *  I  N  A  A  G  *  L  G  Y  N  I  S  *  C  N  P  T  *  S  G  K  G  G  C  K  Q  A  G  *  L  G  *  Y  I  Q  M  D  Q  L  T  S  T  F  I  L  V  *  P  N  Q  Q  M  S  S  P  L  M  R  S  L  V  I  S  M  L  M  H  M  K  P  *  D  I  T  S  C  L  F  I  L  V  F  H  F  V  L  I  L  G  G  S  G  C  *  I  I  T  K  M  A  S  E  H  R  N  R  L  *  C  M  *  L  M  K  T  F  S  I  A  S  F  L  S  S  D  S  T  *  K  D  S  K  F  F  S  A  L  A  S  H  K   </second_frame>
            <third_frame>   V  D  L  V  F  K  Y  V  E  *  A  G  S  T  V  *  I  V  L  Q  L  H  C  T  E  E  Y  N  F  F  S  L  K  F  I  T  P  Q  V  V  Q  V  Q  A  G  S  S  D  V  Q  R  F  A  Q  F  C  S  S  *  S  I  Q  R  I  *  L  K  T  W  R  C  N  R  *  M  L  L  D  N  *  D  T  T  Y  L  S  V  I  P  H  S  L  E  R  V  V  V  S  K  P  D  N  *  D  D  I  Y  K  W  I  S  *  P  A  H  L  Y  L  F  S  Q  T  N  R  *  A  L  P  *  *  E  V  W  S  S  P  C  *  C  I  *  N  L  K  I  S  H  H  V  F  L  S  S  F  F  I  L  S  *  F  *  G  A  V  D  V  E  S  S  Q  K  W  H  L  S  I  V  T  D  Y  D  A  C  N  S  *  R  P  S  P  L  L  L  S  F  H  L  I  Q  L  E  R  T  P  S  F  S  P  L  W  R  L  T  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0179K09.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77729" stop="77499"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASRIIRMIYTNGSANQHIYTCLAKPTDELSPDEKFGHLHVDAYETLRYHIMSFYPRFSFCPDFRGQWMLNHHKNGI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0179K09.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78004" stop="77804"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICGMSRINSMNCPTTALHRRVQFFFSEIYYTSSSPSPGRIIRCTKICSVLFLLINSKDLTQNLALQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="79219" PGL_stop="78336"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79219" e_stop="79176"/>
            <exon e_start="78683" e_stop="78336"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="0.955"/>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="79219" e_stop="79176" e_length="44"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="79175" i_stop="78684" i_length="492"/>
          </intron>
          <exon e_serial="2" e_score="0.908">
            <gDNA_exon_boundary e_start="78683" e_stop="78336" e_length="348"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79219" stop="79176"/>
              <exon start="78683" stop="78336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411645" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGCTGTTTCAATGTTGAGACCTGGCGGTTTCTTTGCGTTTGAG : ACAAATGGTGATGAACAGAGCAAATTCCTAGTCCACTACATCGAGACTAAGAAGCAAGGTAACTTCTCTAAAGTGAAGATGGTATCAGATTTTGCCGGCATCAAGAGATTTATAACAGGATTTAGAGGAAGATGATCTGTGACATTAGCCAAAGAAATCATACAAGGGAATGAATGTGGAAGAACCAGGGGTTTGGGGGCTACAGATTCTGTTCTCTTGGGTTTGAACAATTCAGTTTTGCTCTTTGGACTTTACAGAAAGATATATTATCTCAGATTGTCTCTGATCTTGTGCAAAGAGTCATTTACTACTCTCTAGTAGGCAAACTTCAGTGTAAAGTGATTAAAG</gDNA_template>
            <first_frame> E  L  F  Q  C  *  D  L  A  V  S  L  R  L  R :   Q  M  V  M  N  R  A  N  S  *  S  T  T  S  R  L  R  S  K  V  T  S  L  K  *  R  W  Y  Q  I  L  P  A  S  R  D  L  *  Q  D  L  E  E  D  D  L  *  H  *  P  K  K  S  Y  K  G  M  N  V  E  E  P  G  V  W  G  L  Q  I  L  F  S  W  V  *  T  I  Q  F  C  S  L  D  F  T  E  R  Y  I  I  S  D  C  L  *  S  C  A  K  S  H  L  L  L  S  S  R  Q  T  S  V  *  S  D  *   </first_frame>
            <second_frame>  S  C  F  N  V  E  T  W  R  F  L  C  V  *   : D  K  W  *  *  T  E  Q  I  P  S  P  L  H  R  D  *  E  A  R  *  L  L  *  S  E  D  G  I  R  F  C  R  H  Q  E  I  Y  N  R  I  *  R  K  M  I  C  D  I  S  Q  R  N  H  T  R  E  *  M  W  K  N  Q  G  F  G  G  Y  R  F  C  S  L  G  F  E  Q  F  S  F  A  L  W  T  L  Q  K  D  I  L  S  Q  I  V  S  D  L  V  Q  R  V  I  Y  Y  S  L  V  G  K  L  Q  C  K  V  I  K  </second_frame>
            <third_frame>   A  V  S  M  L  R  P  G  G  F  F  A  F  E  :  T  N  G  D  E  Q  S  K  F  L  V  H  Y  I  E  T  K  K  Q  G  N  F  S  K  V  K  M  V  S  D  F  A  G  I  K  R  F  I  T  G  F  R  G  R  *  S  V  T  L  A  K  E  I  I  Q  G  N  E  C  G  R  T  R  G  L  G  A  T  D  S  V  L  L  G  L  N  N  S  V  L  L  F  G  L  Y  R  K  I  Y  Y  L  R  L  S  L  I  L  C  K  E  S  F  T  T  L  *  *  A  N  F  S  V  K  *  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0179K09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="80794" PGL_stop="79247"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80794" e_stop="80104"/>
            <exon e_start="79421" e_stop="79247"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.772" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="80794" e_stop="80104" e_length="691"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.772">
            <gDNA_intron_boundary i_start="80103" i_stop="79422" i_length="682"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79421" e_stop="79247" e_length="175"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80794" stop="80124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80794" stop="80186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80794" stop="80189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80794" stop="80343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80770" stop="80117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80758" stop="80104"/>
              <exon start="79421" stop="79319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80309" stop="80104"/>
              <exon start="79421" stop="79247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310618" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGACCTGCCTGTGTGTCGAAGAAAATGAAGTTGAGCTTCATTCGACCAATTTCATGTTGCTCTGTTTCATCTCCAGCAACCTCAGTGAAACCTCAAAAACCTATATTTTTAAGGCCACCCACCTTCAAAACAACCATATCAGACCTTCAAAAATGGCATCATTGGGCTAAATCCCTAATTTCTTCTGTGGGTTCCACTTTCTTGGAACTGGACAATGGTCCAGACTCCGAATTGTTGCTCAGGGAGCTAAATTGGCTTGTTGAAGATGCAATTGAAACACCAAAATCTTTCTTGCAACAACCCCACAAAAATTACAATGATAATAGCTCAGTTGCAGTTCGGGCGTCTTTGGAACAACTGTATATGTTGTGGAAACGAAGGGTAGAAGAAAGAATGCCATTTCAGTATGTGGTTGGCTGTGAACATTGGAGGGATTTGGTTTTGAGTGTTCAAGAAGGGGTTTTGATTCCAAGGCCAGAGACTGAGCTGATTGTGGACCTTGTCGATGATGCTATTAAGGAGAATGGGGAATTGAGGGAAGGATTGTGGGCTGATTTGGGGACTGGAAGTGGTGCACTTGCTATTGGGATTGCAAGGATTTTGGGTACTTCTGGTAGAGTTGTTGCTACTGATTTAAGCCCTGTTGCTACTGCAGTTGCATCTTATAATGTGCAGAGGTATGATTTGGAG : GAAAAAGTGCATGTAAAGCAAGGATCTTGGTTTGAACCTTTGAGAGATAATGAAGGAGAATTTGTGGGACTGGTCAGTAATCCACCATATATTCCAAGCAAAGATATTGGTGGACTACAAGCTGAAGTTGGCAGACATGAACCTAGACTGGCGTTAGACGGTGGAGCAAGTGGTA</gDNA_template>
            <first_frame> E  T  C  L  C  V  E  E  N  E  V  E  L  H  S  T  N  F  M  L  L  C  F  I  S  S  N  L  S  E  T  S  K  T  Y  I  F  K  A  T  H  L  Q  N  N  H  I  R  P  S  K  M  A  S  L  G  *  I  P  N  F  F  C  G  F  H  F  L  G  T  G  Q  W  S  R  L  R  I  V  A  Q  G  A  K  L  A  C  *  R  C  N  *  N  T  K  I  F  L  A  T  T  P  Q  K  L  Q  *  *  *  L  S  C  S  S  G  V  F  G  T  T  V  Y  V  V  E  T  K  G  R  R  K  N  A  I  S  V  C  G  W  L  *  T  L  E  G  F  G  F  E  C  S  R  R  G  F  D  S  K  A  R  D  *  A  D  C  G  P  C  R  *  C  Y  *  G  E  W  G  I  E  G  R  I  V  G  *  F  G  D  W  K  W  C  T  C  Y  W  D  C  K  D  F  G  Y  F  W  *  S  C  C  Y  *  F  K  P  C  C  Y  C  S  C  I  L  *  C  A  E  V  *  F  G   : G  K  S  A  C  K  A  R  I  L  V  *  T  F  E  R  *  *  R  R  I  C  G  T  G  Q  *  S  T  I  Y  S  K  Q  R  Y  W  W  T  T  S  *  S  W  Q  T  *  T  *  T  G  V  R  R  W  S  K  W   </first_frame>
            <second_frame>  R  P  A  C  V  S  K  K  M  K  L  S  F  I  R  P  I  S  C  C  S  V  S  S  P  A  T  S  V  K  P  Q  K  P  I  F  L  R  P  P  T  F  K  T  T  I  S  D  L  Q  K  W  H  H  W  A  K  S  L  I  S  S  V  G  S  T  F  L  E  L  D  N  G  P  D  S  E  L  L  L  R  E  L  N  W  L  V  E  D  A  I  E  T  P  K  S  F  L  Q  Q  P  H  K  N  Y  N  D  N  S  S  V  A  V  R  A  S  L  E  Q  L  Y  M  L  W  K  R  R  V  E  E  R  M  P  F  Q  Y  V  V  G  C  E  H  W  R  D  L  V  L  S  V  Q  E  G  V  L  I  P  R  P  E  T  E  L  I  V  D  L  V  D  D  A  I  K  E  N  G  E  L  R  E  G  L  W  A  D  L  G  T  G  S  G  A  L  A  I  G  I  A  R  I  L  G  T  S  G  R  V  V  A  T  D  L  S  P  V  A  T  A  V  A  S  Y  N  V  Q  R  Y  D  L  E  :  E  K  V  H  V  K  Q  G  S  W  F  E  P  L  R  D  N  E  G  E  F  V  G  L  V  S  N  P  P  Y  I  P  S  K  D  I  G  G  L  Q  A  E  V  G  R  H  E  P  R  L  A  L  D  G  G  A  S  G  </second_frame>
            <third_frame>   D  L  P  V  C  R  R  K  *  S  *  A  S  F  D  Q  F  H  V  A  L  F  H  L  Q  Q  P  Q  *  N  L  K  N  L  Y  F  *  G  H  P  P  S  K  Q  P  Y  Q  T  F  K  N  G  I  I  G  L  N  P  *  F  L  L  W  V  P  L  S  W  N  W  T  M  V  Q  T  P  N  C  C  S  G  S  *  I  G  L  L  K  M  Q  L  K  H  Q  N  L  S  C  N  N  P  T  K  I  T  M  I  I  A  Q  L  Q  F  G  R  L  W  N  N  C  I  C  C  G  N  E  G  *  K  K  E  C  H  F  S  M  W  L  A  V  N  I  G  G  I  W  F  *  V  F  K  K  G  F  *  F  Q  G  Q  R  L  S  *  L  W  T  L  S  M  M  L  L  R  R  M  G  N  *  G  K  D  C  G  L  I  W  G  L  E  V  V  H  L  L  L  G  L  Q  G  F  W  V  L  L  V  E  L  L  L  L  I  *  A  L  L  L  L  Q  L  H  L  I  M  C  R  G  M  I  W  R :   K  K  C  M  *  S  K  D  L  G  L  N  L  *  E  I  M  K  E  N  L  W  D  W  S  V  I  H  H  I  F  Q  A  K  I  L  V  D  Y  K  L  K  L  A  D  M  N  L  D  W  R  *  T  V  E  Q  V  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0179K09.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80793" stop="80104"/>
                    <exon start="79421" stop="79248"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>864</number_coding_nucleotides>
                  <number_encoded_amino_acids>288</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RPACVSKKMKLSFIRPISCCSVSSPATSVKPQKPIFLRPPTFKTTISDLQKWHHWAKSLISSVGSTFLELDNGPDSELLLRELNWLVEDAIETPKSFLQQPHKNYNDNSSVAVRASLEQLYMLWKRRVEERMPFQYVVGCEHWRDLVLSVQEGVLIPRPETELIVDLVDDAIKENGELREGLWADLGTGSGALAIGIARILGTSGRVVATDLSPVATAVASYNVQRYDLEEKVHVKQGSWFEPLRDNEGEFVGLVSNPPYIPSKDIGGLQAEVGRHEPRLALDGGASG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="81013" PGL_stop="86047"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83031" e_stop="83454"/>
            <exon e_start="83528" e_stop="83663"/>
            <exon e_start="85332" e_stop="86047"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="0.993"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="83031" e_stop="83454" e_length="424"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="83455" i_stop="83527" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="83528" e_stop="83663" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="83664" i_stop="85331" i_length="1668"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="85332" e_stop="86047" e_length="716"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83031" stop="83454"/>
              <exon start="83528" stop="83663"/>
              <exon start="85332" stop="85657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83060" stop="83454"/>
              <exon start="83528" stop="83663"/>
              <exon start="85332" stop="85378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83060" stop="83454"/>
              <exon start="83528" stop="83663"/>
              <exon start="85332" stop="85355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83060" stop="83454"/>
              <exon start="83528" stop="83663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83060" stop="83454"/>
              <exon start="83528" stop="83597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83060" stop="83454"/>
              <exon start="83528" stop="83593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83060" stop="83454"/>
              <exon start="83528" stop="83550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83108" stop="83454"/>
              <exon start="83528" stop="83663"/>
              <exon start="85332" stop="85516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83127" stop="83454"/>
              <exon start="83528" stop="83663"/>
              <exon start="85332" stop="85746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83141" stop="83454"/>
              <exon start="83528" stop="83663"/>
              <exon start="85332" stop="85373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83193" stop="83454"/>
              <exon start="83528" stop="83663"/>
              <exon start="85332" stop="85417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83271" stop="83454"/>
              <exon start="83528" stop="83663"/>
              <exon start="85332" stop="85417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83282" stop="83454"/>
              <exon start="83528" stop="83663"/>
              <exon start="85332" stop="85884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83316" stop="83454"/>
              <exon start="83528" stop="83663"/>
              <exon start="85332" stop="85808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83323" stop="83454"/>
              <exon start="83528" stop="83663"/>
              <exon start="85332" stop="85883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83323" stop="83454"/>
              <exon start="83528" stop="83663"/>
              <exon start="85332" stop="85859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83339" stop="83454"/>
              <exon start="83528" stop="83663"/>
              <exon start="85332" stop="85575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83535" stop="83663"/>
              <exon start="85332" stop="85647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83621" stop="83663"/>
              <exon start="85332" stop="85868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83621" stop="83663"/>
              <exon start="85332" stop="85856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83621" stop="83663"/>
              <exon start="85332" stop="85822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83621" stop="83663"/>
              <exon start="85332" stop="85800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83621" stop="83663"/>
              <exon start="85332" stop="85794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83621" stop="83663"/>
              <exon start="85332" stop="85724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83621" stop="83663"/>
              <exon start="85332" stop="85655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83621" stop="83663"/>
              <exon start="85332" stop="85652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83621" stop="83663"/>
              <exon start="85332" stop="85557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83621" stop="83663"/>
              <exon start="85332" stop="85522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85463" stop="86047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303737" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85490" stop="85656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295927" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACTTACACTAATACATTTATAATATAGTTTTATTACATGGCAGAGTGCACACTGGACTTAGCCTCCTCTTCTTCCGCTCTCTCTGCTAACTTGCGCATCTCACCTACCCGATTGTCTCCTCTCCGACGATCTCTTGCATTGACCTCTCCGTCCGTTGCTGGAAAGCCACTTTTCTGCTCCCACCCGCATCAGAGGAACTCAGTGTTGAGTACAAATTTCTCGAGATCTCAGTTCAGAACCAAATCATCAATGGCTGAGACAGTGTCTGGGGAAAGTAAAGCGGAAGTGAAAGTGTACGATTCCGATGAGGAACTTGCTGTGGCTCTAGCGAAGTACACTGCTGATTTATCGGAGAAATTTTGTAAGGAGAGAGATGTTTTTACTGTGGTTGTTTCCGGTGGTTCACTTATCAAGTCTCTCAG : GAAATTGGTGGAGCCACCATATATTGATTCAATAGACTGGTCCAAATGGCACGTTTTCTGGGTGGATGAGAGAGTGGTTCCAAAGGATCATCCTGACAGCAATTATTTGCTTGCTTATGATGGTTTTCTATCCAAG : ATACCTATTCCTGCTGGTAATGTGCATGCCATAAATGATGCATTATCAGCAGAGGCTGCGGCAGATGATTACGAGACTTGTCTAAGGCACTTAGTCAAGAGCAAGATACTTGACATCTCTGAAGAGAGTGGGTTTCCAAAATTTGATGTAATGCTATTGGGTATGGGTCCAGACGGACATGTAGCTTCCTTGTTTCCCGGGCATCCTCTTGTCCATGAGAAAGCGAAGTGGGTCACCTTCATCAAGGATTCTCCAAAACCTCCACCGAACAGGATTACATTTACATTCCCTGTAATAAACTCATCTGCAAATATTGCACTTGCTATAGTAGGTGCTGGTAAGGCAGATGTAGTGCATAAATCGCTAGGTGATGATAAAAGTTCTGATTTGCTGCCTGTGCAGATGGTTTCACCTGAAGGAGAATTAGTTTGGTTTTTAGACAAGGATGCAGCTTCGAAGCTGTAAGGATGAGGATATGTGAGCTGCGTATTTGTGCTTCACTCCTCTGTGTATTTTATTATTCTAATAATACATTCTGAAGAAGGGTTGTCTGTAAAATGTTATGCCATTTTTTTCTCACTTGTTTCTGTAAGGATCCTTGACTATGAGGAACTTGGTACTAAAACTACAGTTTATTCTCCTATTACTATATTTTATCTATACAAGTTAGGCATGTGTACAGATTGTTTGCTTCAGCAATAACACAAGTGACAGCT</gDNA_template>
            <first_frame> K  L  T  L  I  H  L  *  Y  S  F  I  T  W  Q  S  A  H  W  T  *  P  P  L  L  P  L  S  L  L  T  C  A  S  H  L  P  D  C  L  L  S  D  D  L  L  H  *  P  L  R  P  L  L  E  S  H  F  S  A  P  T  R  I  R  G  T  Q  C  *  V  Q  I  S  R  D  L  S  S  E  P  N  H  Q  W  L  R  Q  C  L  G  K  V  K  R  K  *  K  C  T  I  P  M  R  N  L  L  W  L  *  R  S  T  L  L  I  Y  R  R  N  F  V  R  R  E  M  F  L  L  W  L  F  P  V  V  H  L  S  S  L  S   : G  N  W  W  S  H  H  I  L  I  Q  *  T  G  P  N  G  T  F  S  G  W  M  R  E  W  F  Q  R  I  I  L  T  A  I  I  C  L  L  M  M  V  F  Y  P  R :   Y  L  F  L  L  V  M  C  M  P  *  M  M  H  Y  Q  Q  R  L  R  Q  M  I  T  R  L  V  *  G  T  *  S  R  A  R  Y  L  T  S  L  K  R  V  G  F  Q  N  L  M  *  C  Y  W  V  W  V  Q  T  D  M  *  L  P  C  F  P  G  I  L  L  S  M  R  K  R  S  G  S  P  S  S  R  I  L  Q  N  L  H  R  T  G  L  H  L  H  S  L  *  *  T  H  L  Q  I  L  H  L  L  *  *  V  L  V  R  Q  M  *  C  I  N  R  *  V  M  I  K  V  L  I  C  C  L  C  R  W  F  H  L  K  E  N  *  F  G  F  *  T  R  M  Q  L  R  S  C  K  D  E  D  M  *  A  A  Y  L  C  F  T  P  L  C  I  L  L  F  *  *  Y  I  L  K  K  G  C  L  *  N  V  M  P  F  F  S  H  L  F  L  *  G  S  L  T  M  R  N  L  V  L  K  L  Q  F  I  L  L  L  L  Y  F  I  Y  T  S  *  A  C  V  Q  I  V  C  F  S  N  N  T  S  D  S  </first_frame>
            <second_frame>  N  L  H  *  Y  I  Y  N  I  V  L  L  H  G  R  V  H  T  G  L  S  L  L  F  F  R  S  L  C  *  L  A  H  L  T  Y  P  I  V  S  S  P  T  I  S  C  I  D  L  S  V  R  C  W  K  A  T  F  L  L  P  P  A  S  E  E  L  S  V  E  Y  K  F  L  E  I  S  V  Q  N  Q  I  I  N  G  *  D  S  V  W  G  K  *  S  G  S  E  S  V  R  F  R  *  G  T  C  C  G  S  S  E  V  H  C  *  F  I  G  E  I  L  *  G  E  R  C  F  Y  C  G  C  F  R  W  F  T  Y  Q  V  S  Q  :  E  I  G  G  A  T  I  Y  *  F  N  R  L  V  Q  M  A  R  F  L  G  G  *  E  S  G  S  K  G  S  S  *  Q  Q  L  F  A  C  L  *  W  F  S  I  Q   : D  T  Y  S  C  W  *  C  A  C  H  K  *  C  I  I  S  R  G  C  G  R  *  L  R  D  L  S  K  A  L  S  Q  E  Q  D  T  *  H  L  *  R  E  W  V  S  K  I  *  C  N  A  I  G  Y  G  S  R  R  T  C  S  F  L  V  S  R  A  S  S  C  P  *  E  S  E  V  G  H  L  H  Q  G  F  S  K  T  S  T  E  Q  D  Y  I  Y  I  P  C  N  K  L  I  C  K  Y  C  T  C  Y  S  R  C  W  *  G  R  C  S  A  *  I  A  R  *  *  *  K  F  *  F  A  A  C  A  D  G  F  T  *  R  R  I  S  L  V  F  R  Q  G  C  S  F  E  A  V  R  M  R  I  C  E  L  R  I  C  A  S  L  L  C  V  F  Y  Y  S  N  N  T  F  *  R  R  V  V  C  K  M  L  C  H  F  F  L  T  C  F  C  K  D  P  *  L  *  G  T  W  Y  *  N  Y  S  L  F  S  Y  Y  Y  I  L  S  I  Q  V  R  H  V  Y  R  L  F  A  S  A  I  T  Q  V  T  A </second_frame>
            <third_frame>   T  Y  T  N  T  F  I  I  *  F  Y  Y  M  A  E  C  T  L  D  L  A  S  S  S  S  A  L  S  A  N  L  R  I  S  P  T  R  L  S  P  L  R  R  S  L  A  L  T  S  P  S  V  A  G  K  P  L  F  C  S  H  P  H  Q  R  N  S  V  L  S  T  N  F  S  R  S  Q  F  R  T  K  S  S  M  A  E  T  V  S  G  E  S  K  A  E  V  K  V  Y  D  S  D  E  E  L  A  V  A  L  A  K  Y  T  A  D  L  S  E  K  F  C  K  E  R  D  V  F  T  V  V  V  S  G  G  S  L  I  K  S  L  R :   K  L  V  E  P  P  Y  I  D  S  I  D  W  S  K  W  H  V  F  W  V  D  E  R  V  V  P  K  D  H  P  D  S  N  Y  L  L  A  Y  D  G  F  L  S  K  :  I  P  I  P  A  G  N  V  H  A  I  N  D  A  L  S  A  E  A  A  A  D  D  Y  E  T  C  L  R  H  L  V  K  S  K  I  L  D  I  S  E  E  S  G  F  P  K  F  D  V  M  L  L  G  M  G  P  D  G  H  V  A  S  L  F  P  G  H  P  L  V  H  E  K  A  K  W  V  T  F  I  K  D  S  P  K  P  P  P  N  R  I  T  F  T  F  P  V  I  N  S  S  A  N  I  A  L  A  I  V  G  A  G  K  A  D  V  V  H  K  S  L  G  D  D  K  S  S  D  L  L  P  V  Q  M  V  S  P  E  G  E  L  V  W  F  L  D  K  D  A  A  S  K  L  *  G  *  G  Y  V  S  C  V  F  V  L  H  S  S  V  Y  F  I  I  L  I  I  H  S  E  E  G  L  S  V  K  C  Y  A  I  F  F  S  L  V  S  V  R  I  L  D  Y  E  E  L  G  T  K  T  T  V  Y  S  P  I  T  I  F  Y  L  Y  K  L  G  M  C  T  D  C  L  L  Q  Q  *  H  K  *  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0179K09.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83060" stop="83454"/>
                    <exon start="83528" stop="83663"/>
                    <exon start="85332" stop="85796"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>993</number_coding_nucleotides>
                  <number_encoded_amino_acids>331</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYYMAECTLDLASSSSALSANLRISPTRLSPLRRSLALTSPSVAGKPLFCSHPHQRNSVLSTNFSRSQFRTKSSMAETVSGESKAEVKVYDSDEELAVALAKYTADLSEKFCKERDVFTVVVSGGSLIKSLRKLVEPPYIDSIDWSKWHVFWVDERVVPKDHPDSNYLLAYDGFLSKIPIPAGNVHAINDALSAEAAADDYETCLRHLVKSKILDISEESGFPKFDVMLLGMGPDGHVASLFPGHPLVHEKAKWVTFIKDSPKPPPNRITFTFPVINSSANIALAIVGAGKADVVHKSLGDDKSSDLLPVQMVSPEGELVWFLDKDAASKL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0179K09.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85803" stop="86033"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GYVSCVFVLHSSVYFIILIIHSEEGLSVKCYAIFFSLVSVRILDYEELGTKTTVYSPITIFYLYKLGMCTDCLLQQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="81013" e_stop="81073"/>
            <exon e_start="83076" e_stop="83454"/>
            <exon e_start="83528" e_stop="83663"/>
            <exon e_start="85332" e_stop="86047"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.782" e_score="0.951"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="0.984"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="81013" e_stop="81073" e_length="61"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.782">
            <gDNA_intron_boundary i_start="81074" i_stop="83075" i_length="2002"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="83076" e_stop="83454" e_length="379"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="83455" i_stop="83527" i_length="73"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83528" e_stop="83663" e_length="136"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="83664" i_stop="85331" i_length="1668"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="85332" e_stop="86047" e_length="716"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81013" stop="81073"/>
              <exon start="83076" stop="83454"/>
              <exon start="83528" stop="83657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83108" stop="83454"/>
              <exon start="83528" stop="83663"/>
              <exon start="85332" stop="85516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83127" stop="83454"/>
              <exon start="83528" stop="83663"/>
              <exon start="85332" stop="85746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83141" stop="83454"/>
              <exon start="83528" stop="83663"/>
              <exon start="85332" stop="85373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83193" stop="83454"/>
              <exon start="83528" stop="83663"/>
              <exon start="85332" stop="85417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83271" stop="83454"/>
              <exon start="83528" stop="83663"/>
              <exon start="85332" stop="85417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83282" stop="83454"/>
              <exon start="83528" stop="83663"/>
              <exon start="85332" stop="85884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83316" stop="83454"/>
              <exon start="83528" stop="83663"/>
              <exon start="85332" stop="85808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83323" stop="83454"/>
              <exon start="83528" stop="83663"/>
              <exon start="85332" stop="85883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83323" stop="83454"/>
              <exon start="83528" stop="83663"/>
              <exon start="85332" stop="85859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83339" stop="83454"/>
              <exon start="83528" stop="83663"/>
              <exon start="85332" stop="85575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83535" stop="83663"/>
              <exon start="85332" stop="85647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83621" stop="83663"/>
              <exon start="85332" stop="85868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83621" stop="83663"/>
              <exon start="85332" stop="85856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83621" stop="83663"/>
              <exon start="85332" stop="85822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83621" stop="83663"/>
              <exon start="85332" stop="85800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83621" stop="83663"/>
              <exon start="85332" stop="85794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83621" stop="83663"/>
              <exon start="85332" stop="85724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83621" stop="83663"/>
              <exon start="85332" stop="85655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83621" stop="83663"/>
              <exon start="85332" stop="85652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83621" stop="83663"/>
              <exon start="85332" stop="85557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83621" stop="83663"/>
              <exon start="85332" stop="85522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85463" stop="86047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303737" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85490" stop="85656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295927" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGCTACTCCTGCTCAGTTCTGGCCAGTGATCAGTGCTCGCTCCCGAGTTACGCTGTTAAG : AGTGCACACTGGACTTAGCCTCCTCTTCTTCCGCTCTCTCTGCTAACTTGCGCATCTCACCTACCCGATTGTCTCCTCTCCGACGATCTCTTGCATTGACCTCTCCGTCCGTTGCTGGAAAGCCACTTTTCTGCTCCCACCCGCATCAGAGGAACTCAGTGTTGAGTACAAATTTCTCGAGATCTCAGTTCAGAACCAAATCATCAATGGCTGAGACAGTGTCTGGGGAAAGTAAAGCGGAAGTGAAAGTGTACGATTCCGATGAGGAACTTGCTGTGGCTCTAGCGAAGTACACTGCTGATTTATCGGAGAAATTTTGTAAGGAGAGAGATGTTTTTACTGTGGTTGTTTCCGGTGGTTCACTTATCAAGTCTCTCAG : GAAATTGGTGGAGCCACCATATATTGATTCAATAGACTGGTCCAAATGGCACGTTTTCTGGGTGGATGAGAGAGTGGTTCCAAAGGATCATCCTGACAGCAATTATTTGCTTGCTTATGATGGTTTTCTATCCAAG : ATACCTATTCCTGCTGGTAATGTGCATGCCATAAATGATGCATTATCAGCAGAGGCTGCGGCAGATGATTACGAGACTTGTCTAAGGCACTTAGTCAAGAGCAAGATACTTGACATCTCTGAAGAGAGTGGGTTTCCAAAATTTGATGTAATGCTATTGGGTATGGGTCCAGACGGACATGTAGCTTCCTTGTTTCCCGGGCATCCTCTTGTCCATGAGAAAGCGAAGTGGGTCACCTTCATCAAGGATTCTCCAAAACCTCCACCGAACAGGATTACATTTACATTCCCTGTAATAAACTCATCTGCAAATATTGCACTTGCTATAGTAGGTGCTGGTAAGGCAGATGTAGTGCATAAATCGCTAGGTGATGATAAAAGTTCTGATTTGCTGCCTGTGCAGATGGTTTCACCTGAAGGAGAATTAGTTTGGTTTTTAGACAAGGATGCAGCTTCGAAGCTGTAAGGATGAGGATATGTGAGCTGCGTATTTGTGCTTCACTCCTCTGTGTATTTTATTATTCTAATAATACATTCTGAAGAAGGGTTGTCTGTAAAATGTTATGCCATTTTTTTCTCACTTGTTTCTGTAAGGATCCTTGACTATGAGGAACTTGGTACTAAAACTACAGTTTATTCTCCTATTACTATATTTTATCTATACAAGTTAGGCATGTGTACAGATTGTTTGCTTCAGCAATAACACAAGTGACAGCT</gDNA_template>
            <first_frame> P  L  L  L  L  S  S  G  Q  *  S  V  L  A  P  E  L  R  C  *   : E  C  T  L  D  L  A  S  S  S  S  A  L  S  A  N  L  R  I  S  P  T  R  L  S  P  L  R  R  S  L  A  L  T  S  P  S  V  A  G  K  P  L  F  C  S  H  P  H  Q  R  N  S  V  L  S  T  N  F  S  R  S  Q  F  R  T  K  S  S  M  A  E  T  V  S  G  E  S  K  A  E  V  K  V  Y  D  S  D  E  E  L  A  V  A  L  A  K  Y  T  A  D  L  S  E  K  F  C  K  E  R  D  V  F  T  V  V  V  S  G  G  S  L  I  K  S  L  R :   K  L  V  E  P  P  Y  I  D  S  I  D  W  S  K  W  H  V  F  W  V  D  E  R  V  V  P  K  D  H  P  D  S  N  Y  L  L  A  Y  D  G  F  L  S  K  :  I  P  I  P  A  G  N  V  H  A  I  N  D  A  L  S  A  E  A  A  A  D  D  Y  E  T  C  L  R  H  L  V  K  S  K  I  L  D  I  S  E  E  S  G  F  P  K  F  D  V  M  L  L  G  M  G  P  D  G  H  V  A  S  L  F  P  G  H  P  L  V  H  E  K  A  K  W  V  T  F  I  K  D  S  P  K  P  P  P  N  R  I  T  F  T  F  P  V  I  N  S  S  A  N  I  A  L  A  I  V  G  A  G  K  A  D  V  V  H  K  S  L  G  D  D  K  S  S  D  L  L  P  V  Q  M  V  S  P  E  G  E  L  V  W  F  L  D  K  D  A  A  S  K  L  *  G  *  G  Y  V  S  C  V  F  V  L  H  S  S  V  Y  F  I  I  L  I  I  H  S  E  E  G  L  S  V  K  C  Y  A  I  F  F  S  L  V  S  V  R  I  L  D  Y  E  E  L  G  T  K  T  T  V  Y  S  P  I  T  I  F  Y  L  Y  K  L  G  M  C  T  D  C  L  L  Q  Q  *  H  K  *  Q   </first_frame>
            <second_frame>  R  Y  S  C  S  V  L  A  S  D  Q  C  S  L  P  S  Y  A  V  K  :  S  A  H  W  T  *  P  P  L  L  P  L  S  L  L  T  C  A  S  H  L  P  D  C  L  L  S  D  D  L  L  H  *  P  L  R  P  L  L  E  S  H  F  S  A  P  T  R  I  R  G  T  Q  C  *  V  Q  I  S  R  D  L  S  S  E  P  N  H  Q  W  L  R  Q  C  L  G  K  V  K  R  K  *  K  C  T  I  P  M  R  N  L  L  W  L  *  R  S  T  L  L  I  Y  R  R  N  F  V  R  R  E  M  F  L  L  W  L  F  P  V  V  H  L  S  S  L  S   : G  N  W  W  S  H  H  I  L  I  Q  *  T  G  P  N  G  T  F  S  G  W  M  R  E  W  F  Q  R  I  I  L  T  A  I  I  C  L  L  M  M  V  F  Y  P  R :   Y  L  F  L  L  V  M  C  M  P  *  M  M  H  Y  Q  Q  R  L  R  Q  M  I  T  R  L  V  *  G  T  *  S  R  A  R  Y  L  T  S  L  K  R  V  G  F  Q  N  L  M  *  C  Y  W  V  W  V  Q  T  D  M  *  L  P  C  F  P  G  I  L  L  S  M  R  K  R  S  G  S  P  S  S  R  I  L  Q  N  L  H  R  T  G  L  H  L  H  S  L  *  *  T  H  L  Q  I  L  H  L  L  *  *  V  L  V  R  Q  M  *  C  I  N  R  *  V  M  I  K  V  L  I  C  C  L  C  R  W  F  H  L  K  E  N  *  F  G  F  *  T  R  M  Q  L  R  S  C  K  D  E  D  M  *  A  A  Y  L  C  F  T  P  L  C  I  L  L  F  *  *  Y  I  L  K  K  G  C  L  *  N  V  M  P  F  F  S  H  L  F  L  *  G  S  L  T  M  R  N  L  V  L  K  L  Q  F  I  L  L  L  L  Y  F  I  Y  T  S  *  A  C  V  Q  I  V  C  F  S  N  N  T  S  D  S  </second_frame>
            <third_frame>   A  T  P  A  Q  F  W  P  V  I  S  A  R  S  R  V  T  L  L  R :   V  H  T  G  L  S  L  L  F  F  R  S  L  C  *  L  A  H  L  T  Y  P  I  V  S  S  P  T  I  S  C  I  D  L  S  V  R  C  W  K  A  T  F  L  L  P  P  A  S  E  E  L  S  V  E  Y  K  F  L  E  I  S  V  Q  N  Q  I  I  N  G  *  D  S  V  W  G  K  *  S  G  S  E  S  V  R  F  R  *  G  T  C  C  G  S  S  E  V  H  C  *  F  I  G  E  I  L  *  G  E  R  C  F  Y  C  G  C  F  R  W  F  T  Y  Q  V  S  Q  :  E  I  G  G  A  T  I  Y  *  F  N  R  L  V  Q  M  A  R  F  L  G  G  *  E  S  G  S  K  G  S  S  *  Q  Q  L  F  A  C  L  *  W  F  S  I  Q   : D  T  Y  S  C  W  *  C  A  C  H  K  *  C  I  I  S  R  G  C  G  R  *  L  R  D  L  S  K  A  L  S  Q  E  Q  D  T  *  H  L  *  R  E  W  V  S  K  I  *  C  N  A  I  G  Y  G  S  R  R  T  C  S  F  L  V  S  R  A  S  S  C  P  *  E  S  E  V  G  H  L  H  Q  G  F  S  K  T  S  T  E  Q  D  Y  I  Y  I  P  C  N  K  L  I  C  K  Y  C  T  C  Y  S  R  C  W  *  G  R  C  S  A  *  I  A  R  *  *  *  K  F  *  F  A  A  C  A  D  G  F  T  *  R  R  I  S  L  V  F  R  Q  G  C  S  F  E  A  V  R  M  R  I  C  E  L  R  I  C  A  S  L  L  C  V  F  Y  Y  S  N  N  T  F  *  R  R  V  V  C  K  M  L  C  H  F  F  L  T  C  F  C  K  D  P  *  L  *  G  T  W  Y  *  N  Y  S  L  F  S  Y  Y  Y  I  L  S  I  Q  V  R  H  V  Y  R  L  F  A  S  A  I  T  Q  V  T  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0179K09.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81073" stop="83454"/>
                    <exon start="83528" stop="83663"/>
                    <exon start="85332" stop="85796"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>978</number_coding_nucleotides>
                  <number_encoded_amino_acids>326</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ECTLDLASSSSALSANLRISPTRLSPLRRSLALTSPSVAGKPLFCSHPHQRNSVLSTNFSRSQFRTKSSMAETVSGESKAEVKVYDSDEELAVALAKYTADLSEKFCKERDVFTVVVSGGSLIKSLRKLVEPPYIDSIDWSKWHVFWVDERVVPKDHPDSNYLLAYDGFLSKIPIPAGNVHAINDALSAEAAADDYETCLRHLVKSKILDISEESGFPKFDVMLLGMGPDGHVASLFPGHPLVHEKAKWVTFIKDSPKPPPNRITFTFPVINSSANIALAIVGAGKADVVHKSLGDDKSSDLLPVQMVSPEGELVWFLDKDAASKL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0179K09.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85803" stop="86033"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GYVSCVFVLHSSVYFIILIIHSEEGLSVKCYAIFFSLVSVRILDYEELGTKTTVYSPITIFYLYKLGMCTDCLLQQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="88278" PGL_stop="92420"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88278" e_stop="88851"/>
            <exon e_start="89756" e_stop="90133"/>
            <exon e_start="90946" e_stop="91063"/>
            <exon e_start="91183" e_stop="91406"/>
            <exon e_start="91569" e_stop="92420"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.890" e_score="0.998"/>
          <exon-intron don_prob="0.989" acc_prob="1.000" e_score="0.987"/>
          <exon-intron don_prob="0.067" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="88278" e_stop="88851" e_length="574"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.890">
            <gDNA_intron_boundary i_start="88852" i_stop="89755" i_length="904"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="89756" e_stop="90133" e_length="378"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="1.000">
            <gDNA_intron_boundary i_start="90134" i_stop="90945" i_length="812"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="90946" e_stop="91063" e_length="118"/>
          </exon>
          <intron i_serial="3" don_prob="0.067" acc_prob="0.998">
            <gDNA_intron_boundary i_start="91064" i_stop="91182" i_length="119"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="91183" e_stop="91406" e_length="224"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="91407" i_stop="91568" i_length="162"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="91569" e_stop="92420" e_length="852"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88278" stop="88698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88615" stop="88851"/>
              <exon start="89756" stop="90133"/>
              <exon start="90946" stop="91029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88813" stop="88851"/>
              <exon start="89756" stop="90133"/>
              <exon start="90946" stop="91063"/>
              <exon start="91183" stop="91321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89772" stop="90133"/>
              <exon start="90946" stop="91063"/>
              <exon start="91183" stop="91276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89906" stop="90133"/>
              <exon start="90946" stop="91025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90032" stop="90133"/>
              <exon start="90946" stop="91063"/>
              <exon start="91183" stop="91406"/>
              <exon start="91569" stop="91583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91258" stop="91406"/>
              <exon start="91569" stop="92203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91598" stop="92420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552630" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCTTTTATTATATCTGAATGAATCTCTCTATCACTTTCTGCCATTATTTTTGCTTGTAATCTTTAGGGTTTTCAGCTTCAATCTTTTGGATCCAGCAATTTGCTTGTTTCAATTTCTCTTTGTTTCAGTATTGAATTCTTCGAGTGTTGTTTCATTTCTTAGTAATTTCATTTTTTTTCTTCTTTGAGTTGAATCTCAGTGAATTCTTGCAGGAGACATATTTGTTTAATTATTCTGAGGTGTTTGATAAATTTCCTCAGAGAGAGAACGCAGATTTTTAAGGGGGAATGGGAATTTGTTACTCTTCAAGTAAAAGCAAGAGCGATGATGGGTTGTGGGATGGTAAGAATGACAGCAGAAGGTTTGATTACAAGTTGAAGAAGAACAGTTATAGTGGCGATTTCAGCTCATTTTTAAGCAAGTTAAGTGGTGTTGGTGGAGGAGGGGGTGAGGACAAGGGGCTGCATCATATTCCCGGAAGGATTTTGGGGAATGGAGCCACCTCCCGTGCTTGCCTACACACTCAGCAAGGGAAAAAAGGAACGAATCAAGATGCCATGATCATTTGGGAG : AATTTTTGCTCGCGAAGTGATACGATCTTTTGCGGAGTATTTGATGGACACGGTCCCTATGGCCATATGGTGGCAAGGAAAGTTCGAGATACTCTTCCGTTTCTCCTGTGTTCAGAGTGGCAAGTTAAATCCGGTGGTGATCAAAGTAATACTTCTGAGACAGGAAATACCAACGGAGGTTCACATCTTGATGATGTCTTGGATGATGATTTGATTGAAGCTATGGAAGCTGAGAACAATGAAAAGTTCCCAGAAATACATCTTCCCCTTAAAAGATCAATGTTAAAAGCTTTCCGGTCGATGGATAAAGAACTCAAGTTGCACCCTTCTATTGATTGTTTCTGTAGTGGATCAACTGCTGTTTCCTTGGTGATGCAG : GGCCAGGATATAATTGTTGGCAATGTTGGTGACTCAAGAGCAGTATTGGCAACTAGAGATAAAGACAACTATTTAATGGCTGTACAGTTGACAGTAGATTTGAAGCCTAATCTTCCAA : GAGAAGCTGCTAGAATACATAAATACAAAGGCAGGGTTTTTGCATTGCAAGATGAGCCAGAGGTTGCGCGTGTATGGTTGCCGAACAGTGACTCTCCTGGCTTGGCAATGGCCAGAGCATTTGGTGATTTTTGTCTCAAGGATTTTGGGTTAATTTCTGTCCCTGATGTGTATTACCACCGCATAACTGATAGGAACGAATTTGTTGTTCTAGCAACTGATGGG : GTTTGGGATGTACTTTCTAATAAGGAAGCCGTGGATATTGTGGCCTCCGCACCAAGTCGCGCAACAGCTGCCCGAGCTCTTGTTGACTGTGCGACAAGAGCTTGGAGGCTGAAGTACCCGACATCAAAAACTGATGATTGTGCTGTAGTATGCCTTTTCCTGGACCGTGTACCTGCACCTGATTCTGTAGTCACAGCGAGGCAACATGATTTGACAAAGGCTCCTGAAGTGGAAATAAAGACGATTATTACTGATGGCAACCTTGAAAGTGCAGATAGTAATGCTACTCATATTGCAGTTCGTGAACATTCAGTTACTACAATAGACGCCAGTGAGATAGTTCCTGTTGACGAATCAATAGAAGAACAGCTAGCGGATAAGGGTCTTGGACATTCTAAGAGAAGCCTAGCCGAGTGCCTTTCAACTGCAGAAGATCAGGAATGGTCAGCCCTCGAGGGAGTAACCAGGGTTAATAGCCTTCTTAGTCTTCCTAGATTTATGTCTGGTGACAAAAAATCAGCCAGTCGGAGGAAATGGTTGTAAGACATCAAGGCATGATACCTCAAGGGCCAAGGCTAATGTAAGTGCTTTGTATTAGCTGTTCTTCTCAAAGATTCTGTAAATCAAAACACTGTAGCAGCAGTAGTAGTATAAAAGACTAAGTGCTGGATCATTGCCTGGAATGTAAAACAGCCTGTGCTTGATGACTATCCAAATTGGCAATGCTTTTTGGTAGAATATTTATGATTGATGAGAACAACGCGAGGCCTCAGACAGAAATAGTAACATTTTCTTGTGCTGTGTAGTATTTTACTTTCATGTCCAAGATGGAATCCCCTCTGGTGCATGTTT</gDNA_template>
            <first_frame> F  L  L  L  Y  L  N  E  S  L  Y  H  F  L  P  L  F  L  L  V  I  F  R  V  F  S  F  N  L  L  D  P  A  I  C  L  F  Q  F  L  F  V  S  V  L  N  S  S  S  V  V  S  F  L  S  N  F  I  F  F  L  L  *  V  E  S  Q  *  I  L  A  G  D  I  F  V  *  L  F  *  G  V  *  *  I  S  S  E  R  E  R  R  F  L  R  G  N  G  N  L  L  L  F  K  *  K  Q  E  R  *  W  V  V  G  W  *  E  *  Q  Q  K  V  *  L  Q  V  E  E  E  Q  L  *  W  R  F  Q  L  I  F  K  Q  V  K  W  C  W  W  R  R  G  *  G  Q  G  A  A  S  Y  S  R  K  D  F  G  E  W  S  H  L  P  C  L  P  T  H  S  A  R  E  K  R  N  E  S  R  C  H  D  H  L  G   : E  F  L  L  A  K  *  Y  D  L  L  R  S  I  *  W  T  R  S  L  W  P  Y  G  G  K  E  S  S  R  Y  S  S  V  S  P  V  F  R  V  A  S  *  I  R  W  *  S  K  *  Y  F  *  D  R  K  Y  Q  R  R  F  T  S  *  *  C  L  G  *  *  F  D  *  S  Y  G  S  *  E  Q  *  K  V  P  R  N  T  S  S  P  *  K  I  N  V  K  S  F  P  V  D  G  *  R  T  Q  V  A  P  F  Y  *  L  F  L  *  W  I  N  C  C  F  L  G  D  A   : G  P  G  Y  N  C  W  Q  C  W  *  L  K  S  S  I  G  N  *  R  *  R  Q  L  F  N  G  C  T  V  D  S  R  F  E  A  *  S  S  K :   R  S  C  *  N  T  *  I  Q  R  Q  G  F  C  I  A  R  *  A  R  G  C  A  C  M  V  A  E  Q  *  L  S  W  L  G  N  G  Q  S  I  W  *  F  L  S  Q  G  F  W  V  N  F  C  P  *  C  V  L  P  P  H  N  *  *  E  R  I  C  C  S  S  N  *  W   : G  L  G  C  T  F  *  *  G  S  R  G  Y  C  G  L  R  T  K  S  R  N  S  C  P  S  S  C  *  L  C  D  K  S  L  E  A  E  V  P  D  I  K  N  *  *  L  C  C  S  M  P  F  P  G  P  C  T  C  T  *  F  C  S  H  S  E  A  T  *  F  D  K  G  S  *  S  G  N  K  D  D  Y  Y  *  W  Q  P  *  K  C  R  *  *  C  Y  S  Y  C  S  S  *  T  F  S  Y  Y  N  R  R  Q  *  D  S  S  C  *  R  I  N  R  R  T  A  S  G  *  G  S  W  T  F  *  E  K  P  S  R  V  P  F  N  C  R  R  S  G  M  V  S  P  R  G  S  N  Q  G  *  *  P  S  *  S  S  *  I  Y  V  W  *  Q  K  I  S  Q  S  E  E  M  V  V  R  H  Q  G  M  I  P  Q  G  P  R  L  M  *  V  L  C  I  S  C  S  S  Q  R  F  C  K  S  K  H  C  S  S  S  S  S  I  K  D  *  V  L  D  H  C  L  E  C  K  T  A  C  A  *  *  L  S  K  L  A  M  L  F  G  R  I  F  M  I  D  E  N  N  A  R  P  Q  T  E  I  V  T  F  S  C  A  V  *  Y  F  T  F  M  S  K  M  E  S  P  L  V  H  V  </first_frame>
            <second_frame>  F  F  Y  Y  I  *  M  N  L  S  I  T  F  C  H  Y  F  C  L  *  S  L  G  F  S  A  S  I  F  W  I  Q  Q  F  A  C  F  N  F  S  L  F  Q  Y  *  I  L  R  V  L  F  H  F  L  V  I  S  F  F  F  F  F  E  L  N  L  S  E  F  L  Q  E  T  Y  L  F  N  Y  S  E  V  F  D  K  F  P  Q  R  E  N  A  D  F  *  G  G  M  G  I  C  Y  S  S  S  K  S  K  S  D  D  G  L  W  D  G  K  N  D  S  R  R  F  D  Y  K  L  K  K  N  S  Y  S  G  D  F  S  S  F  L  S  K  L  S  G  V  G  G  G  G  G  E  D  K  G  L  H  H  I  P  G  R  I  L  G  N  G  A  T  S  R  A  C  L  H  T  Q  Q  G  K  K  G  T  N  Q  D  A  M  I  I  W  E  :  N  F  C  S  R  S  D  T  I  F  C  G  V  F  D  G  H  G  P  Y  G  H  M  V  A  R  K  V  R  D  T  L  P  F  L  L  C  S  E  W  Q  V  K  S  G  G  D  Q  S  N  T  S  E  T  G  N  T  N  G  G  S  H  L  D  D  V  L  D  D  D  L  I  E  A  M  E  A  E  N  N  E  K  F  P  E  I  H  L  P  L  K  R  S  M  L  K  A  F  R  S  M  D  K  E  L  K  L  H  P  S  I  D  C  F  C  S  G  S  T  A  V  S  L  V  M  Q  :  G  Q  D  I  I  V  G  N  V  G  D  S  R  A  V  L  A  T  R  D  K  D  N  Y  L  M  A  V  Q  L  T  V  D  L  K  P  N  L  P   : R  E  A  A  R  I  H  K  Y  K  G  R  V  F  A  L  Q  D  E  P  E  V  A  R  V  W  L  P  N  S  D  S  P  G  L  A  M  A  R  A  F  G  D  F  C  L  K  D  F  G  L  I  S  V  P  D  V  Y  Y  H  R  I  T  D  R  N  E  F  V  V  L  A  T  D  G  :  V  W  D  V  L  S  N  K  E  A  V  D  I  V  A  S  A  P  S  R  A  T  A  A  R  A  L  V  D  C  A  T  R  A  W  R  L  K  Y  P  T  S  K  T  D  D  C  A  V  V  C  L  F  L  D  R  V  P  A  P  D  S  V  V  T  A  R  Q  H  D  L  T  K  A  P  E  V  E  I  K  T  I  I  T  D  G  N  L  E  S  A  D  S  N  A  T  H  I  A  V  R  E  H  S  V  T  T  I  D  A  S  E  I  V  P  V  D  E  S  I  E  E  Q  L  A  D  K  G  L  G  H  S  K  R  S  L  A  E  C  L  S  T  A  E  D  Q  E  W  S  A  L  E  G  V  T  R  V  N  S  L  L  S  L  P  R  F  M  S  G  D  K  K  S  A  S  R  R  K  W  L  *  D  I  K  A  *  Y  L  K  G  Q  G  *  C  K  C  F  V  L  A  V  L  L  K  D  S  V  N  Q  N  T  V  A  A  V  V  V  *  K  T  K  C  W  I  I  A  W  N  V  K  Q  P  V  L  D  D  Y  P  N  W  Q  C  F  L  V  E  Y  L  *  L  M  R  T  T  R  G  L  R  Q  K  *  *  H  F  L  V  L  C  S  I  L  L  S  C  P  R  W  N  P  L  W  C  M  F </second_frame>
            <third_frame>   S  F  I  I  S  E  *  I  S  L  S  L  S  A  I  I  F  A  C  N  L  *  G  F  Q  L  Q  S  F  G  S  S  N  L  L  V  S  I  S  L  C  F  S  I  E  F  F  E  C  C  F  I  S  *  *  F  H  F  F  S  S  L  S  *  I  S  V  N  S  C  R  R  H  I  C  L  I  I  L  R  C  L  I  N  F  L  R  E  R  T  Q  I  F  K  G  E  W  E  F  V  T  L  Q  V  K  A  R  A  M  M  G  C  G  M  V  R  M  T  A  E  G  L  I  T  S  *  R  R  T  V  I  V  A  I  S  A  H  F  *  A  S  *  V  V  L  V  E  E  G  V  R  T  R  G  C  I  I  F  P  E  G  F  W  G  M  E  P  P  P  V  L  A  Y  T  L  S  K  G  K  K  E  R  I  K  M  P  *  S  F  G  R :   I  F  A  R  E  V  I  R  S  F  A  E  Y  L  M  D  T  V  P  M  A  I  W  W  Q  G  K  F  E  I  L  F  R  F  S  C  V  Q  S  G  K  L  N  P  V  V  I  K  V  I  L  L  R  Q  E  I  P  T  E  V  H  I  L  M  M  S  W  M  M  I  *  L  K  L  W  K  L  R  T  M  K  S  S  Q  K  Y  I  F  P  L  K  D  Q  C  *  K  L  S  G  R  W  I  K  N  S  S  C  T  L  L  L  I  V  S  V  V  D  Q  L  L  F  P  W  *  C  R :   A  R  I  *  L  L  A  M  L  V  T  Q  E  Q  Y  W  Q  L  E  I  K  T  T  I  *  W  L  Y  S  *  Q  *  I  *  S  L  I  F  Q  :  E  K  L  L  E  Y  I  N  T  K  A  G  F  L  H  C  K  M  S  Q  R  L  R  V  Y  G  C  R  T  V  T  L  L  A  W  Q  W  P  E  H  L  V  I  F  V  S  R  I  L  G  *  F  L  S  L  M  C  I  T  T  A  *  L  I  G  T  N  L  L  F  *  Q  L  M  G :   F  G  M  Y  F  L  I  R  K  P  W  I  L  W  P  P  H  Q  V  A  Q  Q  L  P  E  L  L  L  T  V  R  Q  E  L  G  G  *  S  T  R  H  Q  K  L  M  I  V  L  *  Y  A  F  S  W  T  V  Y  L  H  L  I  L  *  S  Q  R  G  N  M  I  *  Q  R  L  L  K  W  K  *  R  R  L  L  L  M  A  T  L  K  V  Q  I  V  M  L  L  I  L  Q  F  V  N  I  Q  L  L  Q  *  T  P  V  R  *  F  L  L  T  N  Q  *  K  N  S  *  R  I  R  V  L  D  I  L  R  E  A  *  P  S  A  F  Q  L  Q  K  I  R  N  G  Q  P  S  R  E  *  P  G  L  I  A  F  L  V  F  L  D  L  C  L  V  T  K  N  Q  P  V  G  G  N  G  C  K  T  S  R  H  D  T  S  R  A  K  A  N  V  S  A  L  Y  *  L  F  F  S  K  I  L  *  I  K  T  L  *  Q  Q  *  *  Y  K  R  L  S  A  G  S  L  P  G  M  *  N  S  L  C  L  M  T  I  Q  I  G  N  A  F  W  *  N  I  Y  D  *  *  E  Q  R  E  A  S  D  R  N  S  N  I  F  L  C  C  V  V  F  Y  F  H  V  Q  D  G  I  P  S  G  A  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0179K09.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88561" stop="88851"/>
                    <exon start="89756" stop="90133"/>
                    <exon start="90946" stop="91063"/>
                    <exon start="91183" stop="91406"/>
                    <exon start="91569" stop="92111"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1551</number_coding_nucleotides>
                  <number_encoded_amino_acids>517</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGMGICYSSSKSKSDDGLWDGKNDSRRFDYKLKKNSYSGDFSSFLSKLSGVGGGGGEDKGLHHIPGRILGNGATSRACLHTQQGKKGTNQDAMIIWENFCSRSDTIFCGVFDGHGPYGHMVARKVRDTLPFLLCSEWQVKSGGDQSNTSETGNTNGGSHLDDVLDDDLIEAMEAENNEKFPEIHLPLKRSMLKAFRSMDKELKLHPSIDCFCSGSTAVSLVMQGQDIIVGNVGDSRAVLATRDKDNYLMAVQLTVDLKPNLPREAARIHKYKGRVFALQDEPEVARVWLPNSDSPGLAMARAFGDFCLKDFGLISVPDVYYHRITDRNEFVVLATDGVWDVLSNKEAVDIVASAPSRATAARALVDCATRAWRLKYPTSKTDDCAVVCLFLDRVPAPDSVVTARQHDLTKAPEVEIKTIITDGNLESADSNATHIAVREHSVTTIDASEIVPVDESIEEQLADKGLGHSKRSLAECLSTAEDQEWSALEGVTRVNSLLSLPRFMSGDKKSASRRKWL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="101815" PGL_stop="100087"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101815" e_stop="100087"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="101815" e_stop="100087" e_length="1729"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101815" stop="100087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747577" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTCTGTCCTTCCCCCCAGGTCCCCTTTTTTTCCTTTCTCTCTCTCCTTTATTTCTCTTTTCATAAGCATATTCTTTCTCTCTCTAGGGTTTTCACTTTCACCTGAAATAGTGTTGTTAAATTGAATGATATGTTAGGATCCTTTGGTTCTTCATCATCTCAATCTCACCCTCATCATGATGAAGAATCTTCTGATCATCATCAACAGCGTAGATTCACCGCTACTGCTACAACTATCACCACCACCACCATCACTACCTCACCAGCTATTCAAATCCGCCAGCTACTCATTAGCTGTGCGGAGTTGATTTCGCAGTCCGATTTCTCGGCCGCGAAAAGACTCCTTACTATATTATCAACTAACTCATCTCCTTTTGGTGATTCAACTGAACGGTTAGTCCATCAATTTACTCGCGCACTTTCCCTTCGTCTCAACCGCTATATATCGTCAACCACCAATCATTTCATGACACCTGTTGAAACAACTCCAACTGATTCTTCTTCTTCGTCATCATTAGCTCTAATTCAATCATCATATCTATCTCTAAACCAAGTTACCCCTTTCATAAGGTTTACTCAATTAACCGCTAATCAAGCGATTTTAGAAGCGATTAACGGTAATCATCAAGCAATCCACATCGTTGATTTCGACATTAATCACGGGGTTCAATGGCCACCGTTAATGCAAGCACTAGCTGATCGTTACCCTGCTCCCACTCTTCGAATCACCGGTACTGGAAATGACCTTGATACCCTTCGTAGAACAGGTGATCGTTTAGCTAAATTTGCTCACTCATTAGGGTTGAGATTTCAATTCCATCCTCTTTATATAGCCAATAATAACCACGATCACGATGAAGATCCTTCTATTATTTCCTCCATTGTACTACTCCCTGATGAAACCCTAGCTATCAACTGTGTTTTCTACCTCCACCGCCTTTTAAAAGACCGCGAAAAGTTAAGGATTTTTTTGCATAGGGTTAAGTCAATGAACCCTAAAATTGTTACAATCGCGGAGAAGGAAGCAAATCATAACCATCCTCTTTTTTTACAAAGATTCATCGAGGCGTTGGATTATTATACAGCTGTGTTTGATTCACTGGAAGCTACATTGCCACCGGGTAGTCGAGAGAGGATGACAGTTGAACAAGTGTGGTTTGGGAGAGAGATTGTTGATATCGTTGCGATGGAAGGAGATAAAAGGAAAGAAAGACATGAAAGGTTTAGATCATGGGAAGTTATGTTGAGGAGTTGTGGATTTAGTAATGTTGCTTTAAGCCCTTTTGCATTATCACAAGCTAAGCTTCTTTTGAGACTTCATTATCCTTCTGAAGGCTATCAACTCGGAGTTTCGAGTAATTCTTTCTTCTTAGGTTGGCAAAATCAACCCCTTTTCTCCATCTCGTCTTGGCGTTGAGAAAAACTATCAAATAGCCAACTTCAGAGGGTAATTAAGACTACTGATAGTTTAGGAGGGATCTGAAGAAAACGCGTGGAGTGAAAACCCTAAATAACCAGATTTTCTAATGAAGTTGTAGTAGTAGAAATTTGCATGGTGAAGAACAATATTGAAGAGGTATTGAAATTTCATGTTTTTTTTGTTTTACTTATTGATATGAATGTTTTAAAATTTTTAACATAGAGGACTAGGTTGATGATATATAGTATTTAAGTTAACTAGTCTTTGTATAACGCAAGATCTTGATCAACTTATTTTTATTTTTAATTA</gDNA_template>
            <first_frame> P  L  S  F  P  P  G  P  L  F  F  L  S  L  S  P  L  F  L  F  S  *  A  Y  S  F  S  L  *  G  F  H  F  H  L  K  *  C  C  *  I  E  *  Y  V  R  I  L  W  F  F  I  I  S  I  S  P  S  S  *  *  R  I  F  *  S  S  S  T  A  *  I  H  R  Y  C  Y  N  Y  H  H  H  H  H  H  Y  L  T  S  Y  S  N  P  P  A  T  H  *  L  C  G  V  D  F  A  V  R  F  L  G  R  E  K  T  P  Y  Y  I  I  N  *  L  I  S  F  W  *  F  N  *  T  V  S  P  S  I  Y  S  R  T  F  P  S  S  Q  P  L  Y  I  V  N  H  Q  S  F  H  D  T  C  *  N  N  S  N  *  F  F  F  F  V  I  I  S  S  N  S  I  I  I  S  I  S  K  P  S  Y  P  F  H  K  V  Y  S  I  N  R  *  S  S  D  F  R  S  D  *  R  *  S  S  S  N  P  H  R  *  F  R  H  *  S  R  G  S  M  A  T  V  N  A  S  T  S  *  S  L  P  C  S  H  S  S  N  H  R  Y  W  K  *  P  *  Y  P  S  *  N  R  *  S  F  S  *  I  C  S  L  I  R  V  E  I  S  I  P  S  S  L  Y  S  Q  *  *  P  R  S  R  *  R  S  F  Y  Y  F  L  H  C  T  T  P  *  *  N  P  S  Y  Q  L  C  F  L  P  P  P  P  F  K  R  P  R  K  V  K  D  F  F  A  *  G  *  V  N  E  P  *  N  C  Y  N  R  G  E  G  S  K  S  *  P  S  S  F  F  T  K  I  H  R  G  V  G  L  L  Y  S  C  V  *  F  T  G  S  Y  I  A  T  G  *  S  R  E  D  D  S  *  T  S  V  V  W  E  R  D  C  *  Y  R  C  D  G  R  R  *  K  E  R  K  T  *  K  V  *  I  M  G  S  Y  V  E  E  L  W  I  *  *  C  C  F  K  P  F  C  I  I  T  S  *  A  S  F  E  T  S  L  S  F  *  R  L  S  T  R  S  F  E  *  F  F  L  L  R  L  A  K  S  T  P  F  L  H  L  V  L  A  L  R  K  T  I  K  *  P  T  S  E  G  N  *  D  Y  *  *  F  R  R  D  L  K  K  T  R  G  V  K  T  L  N  N  Q  I  F  *  *  S  C  S  S  R  N  L  H  G  E  E  Q  Y  *  R  G  I  E  I  S  C  F  F  C  F  T  Y  *  Y  E  C  F  K  I  F  N  I  E  D  *  V  D  D  I  *  Y  L  S  *  L  V  F  V  *  R  K  I  L  I  N  L  F  L  F  L  I  </first_frame>
            <second_frame>  L  C  P  S  P  Q  V  P  F  F  S  F  L  S  L  L  Y  F  S  F  H  K  H  I  L  S  L  S  R  V  F  T  F  T  *  N  S  V  V  K  L  N  D  M  L  G  S  F  G  S  S  S  S  Q  S  H  P  H  H  D  E  E  S  S  D  H  H  Q  Q  R  R  F  T  A  T  A  T  T  I  T  T  T  T  I  T  T  S  P  A  I  Q  I  R  Q  L  L  I  S  C  A  E  L  I  S  Q  S  D  F  S  A  A  K  R  L  L  T  I  L  S  T  N  S  S  P  F  G  D  S  T  E  R  L  V  H  Q  F  T  R  A  L  S  L  R  L  N  R  Y  I  S  S  T  T  N  H  F  M  T  P  V  E  T  T  P  T  D  S  S  S  S  S  S  L  A  L  I  Q  S  S  Y  L  S  L  N  Q  V  T  P  F  I  R  F  T  Q  L  T  A  N  Q  A  I  L  E  A  I  N  G  N  H  Q  A  I  H  I  V  D  F  D  I  N  H  G  V  Q  W  P  P  L  M  Q  A  L  A  D  R  Y  P  A  P  T  L  R  I  T  G  T  G  N  D  L  D  T  L  R  R  T  G  D  R  L  A  K  F  A  H  S  L  G  L  R  F  Q  F  H  P  L  Y  I  A  N  N  N  H  D  H  D  E  D  P  S  I  I  S  S  I  V  L  L  P  D  E  T  L  A  I  N  C  V  F  Y  L  H  R  L  L  K  D  R  E  K  L  R  I  F  L  H  R  V  K  S  M  N  P  K  I  V  T  I  A  E  K  E  A  N  H  N  H  P  L  F  L  Q  R  F  I  E  A  L  D  Y  Y  T  A  V  F  D  S  L  E  A  T  L  P  P  G  S  R  E  R  M  T  V  E  Q  V  W  F  G  R  E  I  V  D  I  V  A  M  E  G  D  K  R  K  E  R  H  E  R  F  R  S  W  E  V  M  L  R  S  C  G  F  S  N  V  A  L  S  P  F  A  L  S  Q  A  K  L  L  L  R  L  H  Y  P  S  E  G  Y  Q  L  G  V  S  S  N  S  F  F  L  G  W  Q  N  Q  P  L  F  S  I  S  S  W  R  *  E  K  L  S  N  S  Q  L  Q  R  V  I  K  T  T  D  S  L  G  G  I  *  R  K  R  V  E  *  K  P  *  I  T  R  F  S  N  E  V  V  V  V  E  I  C  M  V  K  N  N  I  E  E  V  L  K  F  H  V  F  F  V  L  L  I  D  M  N  V  L  K  F  L  T  *  R  T  R  L  M  I  Y  S  I  *  V  N  *  S  L  Y  N  A  R  S  *  S  T  Y  F  Y  F  *  L </second_frame>
            <third_frame>   S  V  L  P  P  R  S  P  F  F  P  F  S  L  S  F  I  S  L  F  I  S  I  F  F  L  S  L  G  F  S  L  S  P  E  I  V  L  L  N  *  M  I  C  *  D  P  L  V  L  H  H  L  N  L  T  L  I  M  M  K  N  L  L  I  I  I  N  S  V  D  S  P  L  L  L  Q  L  S  P  P  P  P  S  L  P  H  Q  L  F  K  S  A  S  Y  S  L  A  V  R  S  *  F  R  S  P  I  S  R  P  R  K  D  S  L  L  Y  Y  Q  L  T  H  L  L  L  V  I  Q  L  N  G  *  S  I  N  L  L  A  H  F  P  F  V  S  T  A  I  Y  R  Q  P  P  I  I  S  *  H  L  L  K  Q  L  Q  L  I  L  L  L  R  H  H  *  L  *  F  N  H  H  I  Y  L  *  T  K  L  P  L  S  *  G  L  L  N  *  P  L  I  K  R  F  *  K  R  L  T  V  I  I  K  Q  S  T  S  L  I  S  T  L  I  T  G  F  N  G  H  R  *  C  K  H  *  L  I  V  T  L  L  P  L  F  E  S  P  V  L  E  M  T  L  I  P  F  V  E  Q  V  I  V  *  L  N  L  L  T  H  *  G  *  D  F  N  S  I  L  F  I  *  P  I  I  T  T  I  T  M  K  I  L  L  L  F  P  P  L  Y  Y  S  L  M  K  P  *  L  S  T  V  F  S  T  S  T  A  F  *  K  T  A  K  S  *  G  F  F  C  I  G  L  S  Q  *  T  L  K  L  L  Q  S  R  R  R  K  Q  I  I  T  I  L  F  F  Y  K  D  S  S  R  R  W  I  I  I  Q  L  C  L  I  H  W  K  L  H  C  H  R  V  V  E  R  G  *  Q  L  N  K  C  G  L  G  E  R  L  L  I  S  L  R  W  K  E  I  K  G  K  K  D  M  K  G  L  D  H  G  K  L  C  *  G  V  V  D  L  V  M  L  L  *  A  L  L  H  Y  H  K  L  S  F  F  *  D  F  I  I  L  L  K  A  I  N  S  E  F  R  V  I  L  S  S  *  V  G  K  I  N  P  F  S  P  S  R  L  G  V  E  K  N  Y  Q  I  A  N  F  R  G  *  L  R  L  L  I  V  *  E  G  S  E  E  N  A  W  S  E  N  P  K  *  P  D  F  L  M  K  L  *  *  *  K  F  A  W  *  R  T  I  L  K  R  Y  *  N  F  M  F  F  L  F  Y  L  L  I  *  M  F  *  N  F  *  H  R  G  L  G  *  *  Y  I  V  F  K  L  T  S  L  C  I  T  Q  D  L  D  Q  L  I  F  I  F  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0179K09.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101709" stop="100399"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1308</number_coding_nucleotides>
                  <number_encoded_amino_acids>436</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSVVKLNDMLGSFGSSSSQSHPHHDEESSDHHQQRRFTATATTITTTTITTSPAIQIRQLLISCAELISQSDFSAAKRLLTILSTNSSPFGDSTERLVHQFTRALSLRLNRYISSTTNHFMTPVETTPTDSSSSSSLALIQSSYLSLNQVTPFIRFTQLTANQAILEAINGNHQAIHIVDFDINHGVQWPPLMQALADRYPAPTLRITGTGNDLDTLRRTGDRLAKFAHSLGLRFQFHPLYIANNNHDHDEDPSIISSIVLLPDETLAINCVFYLHRLLKDREKLRIFLHRVKSMNPKIVTIAEKEANHNHPLFLQRFIEALDYYTAVFDSLEATLPPGSRERMTVEQVWFGREIVDIVAMEGDKRKERHERFRSWEVMLRSCGFSNVALSPFALSQAKLLLRLHYPSEGYQLGVSSNSFFLGWQNQPLFSISSWR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="106742" PGL_stop="106115"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106742" e_stop="106115"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="106742" e_stop="106115" e_length="628"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106742" stop="106214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106742" stop="106216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106742" stop="106321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106600" stop="106115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106600" stop="106124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355512" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCTGCTAAAGCATTAACTGATTTATCTCTAAGGTACTGCTTTCATGTGACAGATGCTGGTGTGAAGATGTTGTTGGATAGACCAAATCACAAGGTTAGTCTACTGCAAAAGCTTGATCTTTATAAATGTCGCGGTCTGTCTGGTGATTGGATAATGTCTTCTTTCTGTGGTTTGCGCTGGCTTGGTGTTGGAGGTACTCTGTTAGTCAATAAAAGAGACGATTTCTCCACAATATGCAATGTGCGACCCTGGCTGGTTGTGTGTTTTGATGGCTGTGAATTTGGGTGCCATGATGGTTGGCAATTTCATCGGATCATTATTCATCATTGACAGAAGGCGGATTTTGTAAGAGGAGCAGATCAAGATAGGCTGGAGACGCGAAGTTCCTTTTTACATACTAGTAACATTTCATATTTTGAGTAGCACAAGTTGGTGATGCATATTGGGTTTGCTGCAACCACTCTTTTGTGTCTCTATTTGTGCTTGAACTAGACTTTTGTTTATTTTATTTTATAGCCTTTTCTCCTAGTTTAGGCATATGCATTATTGTGCTTGCTCTCTACCTTTTGAATTACAAACACCCTGTTAAACCGTTTTAAATGAACCATGATTATTGATCAATTATAG</gDNA_template>
            <first_frame> C  C  *  S  I  N  *  F  I  S  K  V  L  L  S  C  D  R  C  W  C  E  D  V  V  G  *  T  K  S  Q  G  *  S  T  A  K  A  *  S  L  *  M  S  R  S  V  W  *  L  D  N  V  F  F  L  W  F  A  L  A  W  C  W  R  Y  S  V  S  Q  *  K  R  R  F  L  H  N  M  Q  C  A  T  L  A  G  C  V  F  *  W  L  *  I  W  V  P  *  W  L  A  I  S  S  D  H  Y  S  S  L  T  E  G  G  F  C  K  R  S  R  S  R  *  A  G  D  A  K  F  L  F  T  Y  *  *  H  F  I  F  *  V  A  Q  V  G  D  A  Y  W  V  C  C  N  H  S  F  V  S  L  F  V  L  E  L  D  F  C  L  F  Y  F  I  A  F  S  P  S  L  G  I  C  I  I  V  L  A  L  Y  L  L  N  Y  K  H  P  V  K  P  F  *  M  N  H  D  Y  *  S  I  I  </first_frame>
            <second_frame>  A  A  K  A  L  T  D  L  S  L  R  Y  C  F  H  V  T  D  A  G  V  K  M  L  L  D  R  P  N  H  K  V  S  L  L  Q  K  L  D  L  Y  K  C  R  G  L  S  G  D  W  I  M  S  S  F  C  G  L  R  W  L  G  V  G  G  T  L  L  V  N  K  R  D  D  F  S  T  I  C  N  V  R  P  W  L  V  V  C  F  D  G  C  E  F  G  C  H  D  G  W  Q  F  H  R  I  I  I  H  H  *  Q  K  A  D  F  V  R  G  A  D  Q  D  R  L  E  T  R  S  S  F  L  H  T  S  N  I  S  Y  F  E  *  H  K  L  V  M  H  I  G  F  A  A  T  T  L  L  C  L  Y  L  C  L  N  *  T  F  V  Y  F  I  L  *  P  F  L  L  V  *  A  Y  A  L  L  C  L  L  S  T  F  *  I  T  N  T  L  L  N  R  F  K  *  T  M  I  I  D  Q  L  * </second_frame>
            <third_frame>   L  L  K  H  *  L  I  Y  L  *  G  T  A  F  M  *  Q  M  L  V  *  R  C  C  W  I  D  Q  I  T  R  L  V  Y  C  K  S  L  I  F  I  N  V  A  V  C  L  V  I  G  *  C  L  L  S  V  V  C  A  G  L  V  L  E  V  L  C  *  S  I  K  E  T  I  S  P  Q  Y  A  M  C  D  P  G  W  L  C  V  L  M  A  V  N  L  G  A  M  M  V  G  N  F  I  G  S  L  F  I  I  D  R  R  R  I  L  *  E  E  Q  I  K  I  G  W  R  R  E  V  P  F  Y  I  L  V  T  F  H  I  L  S  S  T  S  W  *  C  I  L  G  L  L  Q  P  L  F  C  V  S  I  C  A  *  T  R  L  L  F  I  L  F  Y  S  L  F  S  *  F  R  H  M  H  Y  C  A  C  S  L  P  F  E  L  Q  T  P  C  *  T  V  L  N  E  P  *  L  L  I  N  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0179K09.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106741" stop="106412"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AAKALTDLSLRYCFHVTDAGVKMLLDRPNHKVSLLQKLDLYKCRGLSGDWIMSSFCGLRWLGVGGTLLVNKRDDFSTICNVRPWLVVCFDGCEFGCHDGWQFHRIIIHH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 741 chains have been computed
$ 
$ memory statistics:
$ 1323416 bytes spliced alignments in total
$ 531 spliced alignments have been stored
$ 2492 bytes was the average size of a spliced alignment
$ 42464 bytes predicted gene locations in total
$ 21 predicted gene locations have been stored
$ 2022 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 814 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-03 17:51:58
-->
