<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-11-22 16:54:01"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0189M10-XfmMd/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0189M10-XfmMd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0189M10-XfmMd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E253563" ref_strand="+" ref_description="SGN-E253563 [cLEG-24-D14]">
      <seq>catagaggaaattgaattaatgaataagtagaagatgacactttgttggtgactttgatctcaaaagagtgcttatcaatattgtttgtttaatttattacggtatgttatttgtcttattttactttagtaaactatttattgaaacttctttcaaagattagtttttttagtcgaaagttttttgaaagcatattttatattgagcaagaggtaagaataagatttatatacatttcatgacctgcttatgaaatcatactgaatatgttattattattatttattttagcaaaatgctcatgtagtatattgtattgtaccttaattgaatgtttgatgcatgtttgtggggcggtgaagcaatatttgatcctatatatgaaatagttttttagttgaagatcgttcagctgatcgtccttgaatttatataccttttataatataaaagtgtcaaatttgtaatttaaaaaaataatcaccattcttatatactatttgtaagaatgatccttgttatttttacttgaacttagaaatgatttagatgatttactttaaaattttaaacatattgtagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0189M10-XfmMd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0189M10.2" temp_strand="+" temp_description="C07HBa0189M10.2  AC216425.2 htgs_phase:3 submitted_to_sgn_as:gi|167341761|gb|AC216425.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0189M10, complete sequence">
        <position start="4803" stop="5987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5103" g_stop="5687" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="584" r_length="584" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0189M10.2" gen_strand="+" ref_id="SGN-E253563" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0189M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5103" e_stop="5687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAGAGGAAATTGAATTAATGAAGAAGTAGAAGATGACACTTTGTTGGTGACTTTGATCTCAAAAGAGTGCTTATCAATATTGTTTGTTTAATTTATTACGGTATGTTATTTGTCTTATTTTACTTTAGTAAACTATTTATTGAAACTTCTTTCAAAGATTAGTTTTTTTAGTCGAAAGTTTTTTGAAAGCATATTTTATATTGAGCAAGAGGTAAGAATAAGATTTATATACATTTCATGACCTGCTTATGAAATCATACTGAATATGTTATTATTATTATTTATTTTAGCAAAATGCTCATGTAGTATATTGTATTGTACCTTAATTGAATGTTTGATGCATGTTTGTGGGGCGGTGAAGCAATATTTGATCCTATATATGAAATAGTTTTTTAGTTGAAGATCGTTCAGCTGATCGTCCTTGAATTTATATACCTTTTATAATATAAAAGTGTCAAATTTGTAATTTAAAAAAAATAATCACCATTCTTATATACTATTTGTAAGAATGATCCTTGTTATTTTTACTTGAACTTAGAAATGATTTAGATGATTTACTTTAAAATTTTAAACATATTGTAGT</genome_strand>
        <mrna_strand>CATAGAGGAAATTGAATTAATGAATAAGTAGAAGATGACACTTTGTTGGTGACTTTGATCTCAAAAGAGTGCTTATCAATATTGTTTGTTTAATTTATTACGGTATGTTATTTGTCTTATTTTACTTTAGTAAACTATTTATTGAAACTTCTTTCAAAGATTAGTTTTTTTAGTCGAAAGTTTTTTGAAAGCATATTTTATATTGAGCAAGAGGTAAGAATAAGATTTATATACATTTCATGACCTGCTTATGAAATCATACTGAATATGTTATTATTATTATTTATTTTAGCAAAATGCTCATGTAGTATATTGTATTGTACCTTAATTGAATGTTTGATGCATGTTTGTGGGGCGGTGAAGCAATATTTGATCCTATATATGAAATAGTTTTTTAGTTGAAGATCGTTCAGCTGATCGTCCTTGAATTTATATACCTTTTATAATATAAAAGTGTCAAATTTGTAATTT-AAAAAAATAATCACCATTCTTATATACTATTTGTAAGAATGATCCTTGTTATTTTTACTTGAACTTAGAAATGATTTAGATGATTTACTTTAAAATTTTAAACATATTGTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0189M10-XfmMd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357019" ref_strand="+" ref_description="SGN-E357019 [cTOS-22-O13]">
      <seq>tgagcgccagcaaatgagtggagagtccagtagctacagtcggaacatgtcatcatcgtacaatgagcatccttcatgtgataggttttccaatggggaggagctagagaatgatgattaccctcatgctgagggcaccatgcacgtgtcacctgaaagccatctggaaataccaagggaggacggtgaatgggctgatcatggttccatggtagccgaagttggaactagttatgcagtctctgacgaaatggaagatgatgcttcattccctctgcagggtgaaatggtaagcgatcttcaacccaacactagttcaatagttcccgagaattttgaagagcagatgatgttagctatggctgtttcactggctgaggcaagtgcacggtctagtccacccggggtggcctggcactagtagtgctatcgatgtgggttatgaggattccacttgtgttgcattgccactncacccaaaaagaaaaagtaaaaaaagaaaatgcttctacttttttttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0189M10-XfmMd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0189M10.2" temp_strand="-" temp_description="C07HBa0189M10.2  AC216425.2 htgs_phase:3 submitted_to_sgn_as:gi|167341761|gb|AC216425.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0189M10, complete sequence">
        <position start="7639" stop="6519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7339" g_stop="6821" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0189M10.2" gen_strand="-" ref_id="SGN-E357019" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0189M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7339" e_stop="6821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCGCCAGCAAATGAGTGGAGAGTCCAGTAGCTACAGTCGGAACATGTCATCATCGTACAATGAGCATCCTTCATGTGATAGGTTTTCCAATGGGGAGGAGCTAGAGAATGATGATTACCCTCATGCTGAGGGCACCATGCACGTGTCACCTGAAAGCCATCTGGAAATACCAAGGGAGGACGGTGAATGGGCTGATCATGGTTCCATGGTAGCCGAAGTTGGAACTAGTTATGCAGTCTCTGACGAAATGGAAGATGATGCTTCATTCCCTCTGCAGGGTGAAATGGTAAGCGATCTTCAACCCAACACTAGTTCAATAGTTCCCGAGAATTTTGAAGAGCAGATGATGTTAGCTATGGCTGTTTCACTGGCTGAGGCAAGTGCACGGTCTAGTCCACCCGGGGTGGCCTGGCACTAGTAGTGCTATCGATGTGGGTTATGAGGATTCCACTTGTGTTGCATTGCCACTCAACCCAAAAAGAAAAAGTAAAAAAAGAAAATGCTTCTACTTTTTTT</genome_strand>
        <mrna_strand>TGAGCGCCAGCAAATGAGTGGAGAGTCCAGTAGCTACAGTCGGAACATGTCATCATCGTACAATGAGCATCCTTCATGTGATAGGTTTTCCAATGGGGAGGAGCTAGAGAATGATGATTACCCTCATGCTGAGGGCACCATGCACGTGTCACCTGAAAGCCATCTGGAAATACCAAGGGAGGACGGTGAATGGGCTGATCATGGTTCCATGGTAGCCGAAGTTGGAACTAGTTATGCAGTCTCTGACGAAATGGAAGATGATGCTTCATTCCCTCTGCAGGGTGAAATGGTAAGCGATCTTCAACCCAACACTAGTTCAATAGTTCCCGAGAATTTTGAAGAGCAGATGATGTTAGCTATGGCTGTTTCACTGGCTGAGGCAAGTGCACGGTCTAGTCCACCCGGGGTGGCCTGGCACTAGTAGTGCTATCGATGTGGGTTATGAGGATTCCACTTGTGTTGCATTGCCACTNCACCCAAAAAGAAAAAGTAAAAAAAGAAAATGCTTCTACTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0189M10-XfmMd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353657" ref_strand="+" ref_description="SGN-E353657 [cTOS-10-B9]">
      <seq>tgagcgccagcaaatgagtggagagtccagtagctacagtcggaacatgtcatcatcgtacaatgagcatccttcatgtgataggttttccaatggggaggagctagagaatgatgattaccctcatgctgagggcaccatgcacgtgtcacctgaaagccatctggaaataccaagggaggacggtgaatgggctgatcatggttccatggtagccgaagttggaactagttatgcagtctctgacgaaatggaagatgatgcttcattccctctgcagggtgaaatggtaagcgatcttcaacccaacactagttcaatagttcccgagaattttgaagagcagatgatgttagctatggctgtttcactggctgaggcaagtgcacggtctagtccacccggggtggcctggcactagtagtgctatcgatgtgggttatgaggattccacttgtgttgcattgccactcaacccaaaaagaaaaagtaaaaaaagaaaatgcttctacttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0189M10-XfmMd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0189M10.2" temp_strand="-" temp_description="C07HBa0189M10.2  AC216425.2 htgs_phase:3 submitted_to_sgn_as:gi|167341761|gb|AC216425.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0189M10, complete sequence">
        <position start="7639" stop="6521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7339" g_stop="6821" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0189M10.2" gen_strand="-" ref_id="SGN-E353657" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0189M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7339" e_stop="6821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCGCCAGCAAATGAGTGGAGAGTCCAGTAGCTACAGTCGGAACATGTCATCATCGTACAATGAGCATCCTTCATGTGATAGGTTTTCCAATGGGGAGGAGCTAGAGAATGATGATTACCCTCATGCTGAGGGCACCATGCACGTGTCACCTGAAAGCCATCTGGAAATACCAAGGGAGGACGGTGAATGGGCTGATCATGGTTCCATGGTAGCCGAAGTTGGAACTAGTTATGCAGTCTCTGACGAAATGGAAGATGATGCTTCATTCCCTCTGCAGGGTGAAATGGTAAGCGATCTTCAACCCAACACTAGTTCAATAGTTCCCGAGAATTTTGAAGAGCAGATGATGTTAGCTATGGCTGTTTCACTGGCTGAGGCAAGTGCACGGTCTAGTCCACCCGGGGTGGCCTGGCACTAGTAGTGCTATCGATGTGGGTTATGAGGATTCCACTTGTGTTGCATTGCCACTCAACCCAAAAAGAAAAAGTAAAAAAAGAAAATGCTTCTACTTTTTTT</genome_strand>
        <mrna_strand>TGAGCGCCAGCAAATGAGTGGAGAGTCCAGTAGCTACAGTCGGAACATGTCATCATCGTACAATGAGCATCCTTCATGTGATAGGTTTTCCAATGGGGAGGAGCTAGAGAATGATGATTACCCTCATGCTGAGGGCACCATGCACGTGTCACCTGAAAGCCATCTGGAAATACCAAGGGAGGACGGTGAATGGGCTGATCATGGTTCCATGGTAGCCGAAGTTGGAACTAGTTATGCAGTCTCTGACGAAATGGAAGATGATGCTTCATTCCCTCTGCAGGGTGAAATGGTAAGCGATCTTCAACCCAACACTAGTTCAATAGTTCCCGAGAATTTTGAAGAGCAGATGATGTTAGCTATGGCTGTTTCACTGGCTGAGGCAAGTGCACGGTCTAGTCCACCCGGGGTGGCCTGGCACTAGTAGTGCTATCGATGTGGGTTATGAGGATTCCACTTGTGTTGCATTGCCACTCAACCCAAAAAGAAAAAGTAAAAAAAGAAAATGCTTCTACTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0189M10-XfmMd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E224901" ref_strand="+" ref_description="SGN-E224901 [cLEL-27-J6](-)">
      <seq>catgtcatcatcgtacaatgagcatccttcatgtgataggttttccaatggggaggagctagagaatgatgattaccctcatgctgagggcaccatgcacgtgtcacctgaaagccatctggaaataccaagggaggacggtgaatgggctgatcatggttccatggtagccgaagttggaactagttatgcagtctctgacgaaatggaagatgatgcttcattccctctgcagggtgaaatggtaagcgatcttcaacccaacactagttcaatagttcccgagaattttgaagagcagatgatgttagctatggctgtttcactggctgaggcaagtgcacggtctagtccacccggggtggcctggcactagtagtgctatcgatgtgggttatgaggattccacttgtgttgcattgccactcaaccccaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0189M10-XfmMd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0189M10.2" temp_strand="-" temp_description="C07HBa0189M10.2  AC216425.2 htgs_phase:3 submitted_to_sgn_as:gi|167341761|gb|AC216425.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0189M10, complete sequence">
        <position start="7594" stop="6539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7294" g_stop="6839" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="456" r_length="456" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0189M10.2" gen_strand="-" ref_id="SGN-E224901" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0189M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7294" e_stop="6839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGTCATCATCGTACAATGAGCATCCTTCATGTGATAGGTTTTCCAATGGGGAGGAGCTAGAGAATGATGATTACCCTCATGCTGAGGGCACCATGCACGTGTCACCTGAAAGCCATCTGGAAATACCAAGGGAGGACGGTGAATGGGCTGATCATGGTTCCATGGTAGCCGAAGTTGGAACTAGTTATGCAGTCTCTGACGAAATGGAAGATGATGCTTCATTCCCTCTGCAGGGTGAAATGGTAAGCGATCTTCAACCCAACACTAGTTCAATAGTTCCCGAGAATTTTGAAGAGCAGATGATGTTAGCTATGGCTGTTTCACTGGCTGAGGCAAGTGCACGGTCTAGTCCACCCGGGGTGGCCTGGCACTAGTAGTGCTATCGATGTGGGTTATGAGGATTCCACTTGTGTTGCATTGCCACTCAACCCAAAAAGAAAAAGTAAAAAAAGAA</genome_strand>
        <mrna_strand>CATGTCATCATCGTACAATGAGCATCCTTCATGTGATAGGTTTTCCAATGGGGAGGAGCTAGAGAATGATGATTACCCTCATGCTGAGGGCACCATGCACGTGTCACCTGAAAGCCATCTGGAAATACCAAGGGAGGACGGTGAATGGGCTGATCATGGTTCCATGGTAGCCGAAGTTGGAACTAGTTATGCAGTCTCTGACGAAATGGAAGATGATGCTTCATTCCCTCTGCAGGGTGAAATGGTAAGCGATCTTCAACCCAACACTAGTTCAATAGTTCCCGAGAATTTTGAAGAGCAGATGATGTTAGCTATGGCTGTTTCACTGGCTGAGGCAAGTGCACGGTCTAGTCCACCCGGGGTGGCCTGGCACTAGTAGTGCTATCGATGTGGGTTATGAGGATTCCACTTGTGTTGCATTGCCACTCAACCCCAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0189M10-XfmMd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E224401" ref_strand="+" ref_description="SGN-E224401 [cLEL-27-J6](-)">
      <seq>gtcatcatcgtacaatgagcatccttcatgtgataggttttccaatggggaggagctagagaatgatgattaccctcatgctgagggcaccatgcacgtgtcacctgaaagccatctggaaataccaagggaggacggtgaatgggctgatcatggttccatggtagccgaagttggaactagttatgcagtctctgacgaaatggaagatgatgcttcattccctctgcagggtgaaatggtaagcgatcttcaacccaacactagttcaatagttcccgagaattttgaagagcagatgatgttagctatggctgtttcactggctgaggcaagtgcacggtctagtccacccggggtggcctggcactagtagtgctatcgatgtgggttatgaggattccacttgtgttgcattgccactcaacccaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0189M10-XfmMd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0189M10.2" temp_strand="-" temp_description="C07HBa0189M10.2  AC216425.2 htgs_phase:3 submitted_to_sgn_as:gi|167341761|gb|AC216425.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0189M10, complete sequence">
        <position start="7591" stop="6538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7291" g_stop="6839" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0189M10.2" gen_strand="-" ref_id="SGN-E224401" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0189M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7291" e_stop="6839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATCATCGTACAATGAGCATCCTTCATGTGATAGGTTTTCCAATGGGGAGGAGCTAGAGAATGATGATTACCCTCATGCTGAGGGCACCATGCACGTGTCACCTGAAAGCCATCTGGAAATACCAAGGGAGGACGGTGAATGGGCTGATCATGGTTCCATGGTAGCCGAAGTTGGAACTAGTTATGCAGTCTCTGACGAAATGGAAGATGATGCTTCATTCCCTCTGCAGGGTGAAATGGTAAGCGATCTTCAACCCAACACTAGTTCAATAGTTCCCGAGAATTTTGAAGAGCAGATGATGTTAGCTATGGCTGTTTCACTGGCTGAGGCAAGTGCACGGTCTAGTCCACCCGGGGTGGCCTGGCACTAGTAGTGCTATCGATGTGGGTTATGAGGATTCCACTTGTGTTGCATTGCCACTCAACCCAAAAAGAAAAAGTAAAAAAAGAA</genome_strand>
        <mrna_strand>GTCATCATCGTACAATGAGCATCCTTCATGTGATAGGTTTTCCAATGGGGAGGAGCTAGAGAATGATGATTACCCTCATGCTGAGGGCACCATGCACGTGTCACCTGAAAGCCATCTGGAAATACCAAGGGAGGACGGTGAATGGGCTGATCATGGTTCCATGGTAGCCGAAGTTGGAACTAGTTATGCAGTCTCTGACGAAATGGAAGATGATGCTTCATTCCCTCTGCAGGGTGAAATGGTAAGCGATCTTCAACCCAACACTAGTTCAATAGTTCCCGAGAATTTTGAAGAGCAGATGATGTTAGCTATGGCTGTTTCACTGGCTGAGGCAAGTGCACGGTCTAGTCCACCCGGGGTGGCCTGGCACTAGTAGTGCTATCGATGTGGGTTATGAGGATTCCACTTGTGTTGCATTGCCACTCAACCCAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0189M10-XfmMd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250545" ref_strand="+" ref_description="SGN-E250545 [cLEG-21-G13]">
      <seq>taagaggataaaatatatataaaaaaattatattgttcttagacaaagtactattttttttatattatatataaaaattgtacaataatatacgtgtaaatcagatatcgaaacacacactacaaatttttgtatcagaggcgaaacttctgatcttgttccctcctcctctctcttttctcctgttgccttcttcctcaagatgggtgaatttgtgttgttgaaatttcatgtattttatgttgtgggagttttgtattttgagatgtgaaaattagggctaggagattcttgtttctttgctgtttttttttttttgggtttgttttttgggggaattgtttttggatgggtaataagttgggaaggaggaaacaagtggtggatgataagtacactaggcctcaagggttgtaccagcataaggatgtggatgttaagaagcttcgaaaactcattcttgattccaagcttgctccttgctaccctggtgatgacgattgtcccaatgctaaccttgaagaatgccccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0189M10-XfmMd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0189M10.2" temp_strand="-" temp_description="C07HBa0189M10.2  AC216425.2 htgs_phase:3 submitted_to_sgn_as:gi|167341761|gb|AC216425.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0189M10, complete sequence">
        <position start="14439" stop="13197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14139" g_stop="13939" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13938" i_stop="13827" i_length="112">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13826" g_stop="13497" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="533" r_length="332" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0189M10.2" gen_strand="-" ref_id="SGN-E250545" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0189M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14139" e_stop="13939"/>
          <exon e_start="13826" e_stop="13497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGAGGATAAAATATATATAAAAAAATTATATTGTTCTTAGACAAAGTACTATTTTTTTTATATTATATATAAAAATTGTACAATAATATACGTGTAAATCAGATATCGAAACACACACTACAAATTTTTGTATCAGAGGCGAAACTTCTGATCTTGTTCCCTCCTCCTCTCTCTTTTCTCCTGTTGCCTTCTTCCTCAGGTGGGTTTTTCTTTGAAAAAAAAGTTCTGGTTTTTTGGTTAAAGATTAAATTTTTACGTAATTATTGTTTCTATTTTGTGAAAATTTGAATTGGGTATTTTTTATTTTGCAGGATGGGTGAATTTGTGTTGTTGAAATTTCATGTATTTTATGTTGTGGGAGTTTTGTATTTTGAGATGTGAAAATTAGGGCTAGGAGATTCTTGTTTCTTTGCTGT-TTTT-TTTTTTGGGTTTGTTTTTTGGGGGAATTGTTTTTGGATGGGTAATAAGTTGGGAAGGAGGAAACAAGTGGTGGATGATAAGTACACTAGGCCTCAGGGGTTGTACCAGCATAAGGATGTGGATGTTAAGAAGCTTCGAAAACTCATTCTTGATTCCAAGCTTGCTCCTTGCTACCCTGGTGATGACGATTGTCCCAATGCTAACCTTGAAGAATGCCCCAT</genome_strand>
        <mrna_strand>TAAGAGGATAAAATATATATAAAAAAATTATATTGTTCTTAGACAAAGTACTATTTTTTTTATATTATATATAAAAATTGTACAATAATATACGTGTAAATCAGATATCGAAACACACACTACAAATTTTTGTATCAGAGGCGAAACTTCTGATCTTGTTCCCTCCTCCTCTCTCTTTTCTCCTGTTGCCTTCTTCCTCAA................................................................................................................GATGGGTGAATTTGTGTTGTTGAAATTTCATGTATTTTATGTTGTGGGAGTTTTGTATTTTGAGATGTGAAAATTAGGGCTAGGAGATTCTTGTTTCTTTGCTGTTTTTTTTTTTTTGGGTTTGTTTTTTGGGGGAATTGTTTTTGGATGGGTAATAAGTTGGGAAGGAGGAAACAAGTGGTGGATGATAAGTACACTAGGCCTCAAGGGTTGTACCAGCATAAGGATGTGGATGTTAAGAAGCTTCGAAAACTCATTCTTGATTCCAAGCTTGCTCCTTGCTACCCTGGTGATGACGATTGTCCCAATGCTAACCTTGAAGAATGCCCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0189M10-XfmMd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E248751" ref_strand="+" ref_description="SGN-E248751 [cLEG-5-M19]">
      <seq>gataaaatatatataaaaaaattatattgttcttagacaaagtactattttttttatattatatataaaaattgtacaataatatacgtgtaaatcagatatcgaaacacacactacaaatttttgtatcagaggcgaaacttctgatcttgttccctcctcctctctcttttctcctgttgccttcttcctcaagatgggtgaatttgtgttgttgaaatttcatgtattttatgttgtgggagttttgtattttgagatgtgaaaattatggctaggagattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0189M10-XfmMd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0189M10.2" temp_strand="-" temp_description="C07HBa0189M10.2  AC216425.2 htgs_phase:3 submitted_to_sgn_as:gi|167341761|gb|AC216425.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0189M10, complete sequence">
        <position start="14433" stop="13437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14133" g_stop="13939" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13938" i_stop="13827" i_length="112">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13826" g_stop="13737" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="285" r_length="90" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0189M10.2" gen_strand="-" ref_id="SGN-E248751" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>285</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0189M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14133" e_stop="13939"/>
          <exon e_start="13826" e_stop="13737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAAAATATATATAAAAAAATTATATTGTTCTTAGACAAAGTACTATTTTTTTTATATTATATATAAAAATTGTACAATAATATACGTGTAAATCAGATATCGAAACACACACTACAAATTTTTGTATCAGAGGCGAAACTTCTGATCTTGTTCCCTCCTCCTCTCTCTTTTCTCCTGTTGCCTTCTTCCTCAGGTGGGTTTTTCTTTGAAAAAAAAGTTCTGGTTTTTTGGTTAAAGATTAAATTTTTACGTAATTATTGTTTCTATTTTGTGAAAATTTGAATTGGGTATTTTTTATTTTGCAGGATGGGTGAATTTGTGTTGTTGAAATTTCATGTATTTTATGTTGTGGGAGTTTTGTATTTTGAGATGTGAAAATTAGGGCTAGGAGATTC</genome_strand>
        <mrna_strand>GATAAAATATATATAAAAAAATTATATTGTTCTTAGACAAAGTACTATTTTTTTTATATTATATATAAAAATTGTACAATAATATACGTGTAAATCAGATATCGAAACACACACTACAAATTTTTGTATCAGAGGCGAAACTTCTGATCTTGTTCCCTCCTCCTCTCTCTTTTCTCCTGTTGCCTTCTTCCTCAA................................................................................................................GATGGGTGAATTTGTGTTGTTGAAATTTCATGTATTTTATGTTGTGGGAGTTTTGTATTTTGAGATGTGAAAATTATGGCTAGGAGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0189M10-XfmMd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375745" ref_strand="+" ref_description="SGN-E375745 [TUS-35-M9](-)">
      <seq>tcaagtgcactctacccgtattgcttttgttgaatttgttatggctgagagtgcaattttggcgttggactgttgcggacagattttgggatcccaacgcatcagggtgagtccttcaaagacacctgtgaggccacgagttcctcgccccatgatgcattaggcaatcctttgttgctatcaaggtctggaaagagttgagcgcaagccctcttggatgacttgaggtcgcgatgggaacatgagacaaacgtttgtttcagtaatttccgtctttttcattcccacttcctttcagctcgcggtaactctttatcattactgaaaatgactgttgaccctgtttagcttaaagtttttaacagaaatgtcacaacattttagtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0189M10-XfmMd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0189M10.2" temp_strand="-" temp_description="C07HBa0189M10.2  AC216425.2 htgs_phase:3 submitted_to_sgn_as:gi|167341761|gb|AC216425.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0189M10, complete sequence">
        <position start="32983" stop="30373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32683" g_stop="32641" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32640" i_stop="32254" i_length="387">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32253" g_stop="32192" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="105" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32191" i_stop="30954" i_length="1238">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30953" g_stop="30665" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="394" r_length="289" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0189M10.2" gen_strand="-" ref_id="SGN-E375745" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0189M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32683" e_stop="32641"/>
          <exon e_start="32253" e_stop="32192"/>
          <exon e_start="30953" e_stop="30665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGTGCACTCTACCCGTATTGCTTTTGTTGAATTTGTTATGGTACGTTGACTATCTTTTTCTTTTTCTTTGGATTTAAGTTGAGATATAGCATCAATAGGTACATTAAACACATCTATAGATTATAATGTCACTAGATGATGACTCTTCCTTATTTTAGTTTTTTGTGTCATGGAATTATCAGCACGATCTTCTTCTTTTTTGTAATTCTTCTGAATGTACTTCTCTTCCTCCCCTTGTTATTTTTGTGGCCGCAACCATCACTCTAGAGACGCCATTGAGCAGAGGAAGTTCCTATAAATTATCAGTGGTATATCTAAAGATGCTAGCCTGCAAAAAGCTGCAGCATGATATCAAATATTTCGTTTTGAAGATGATCTAAACAGGTGCTGGAATTATAATGTAAAAAGATACTTGATAAATGTGCAGGCTGAGAGTGCAATTTTGGCGTTGGACTGTTGCGGACAGATTTTGGGATCCCAACGCATCAGGTACTTCAGTTAGAAGTGTCTTTGATCCCAATTGATATTGCATCTTTTTAAGCTTGGTATCTCAGGTTCTATTTTCTCCCAAATAGGCACCAATCAACAGAGTCATGCACTCTAAGGTTCCCCTTGAACTGGAAAAGCTTCTTCTCTCTTTCTCCAAATGTATACTATCACATTGCCTGCTTTCTGCCTTTCTGTCATCTGAAAATGAAACTGAAAAATAATGCTACAGTACAGGCAGTGCATGCCAGATCCTAGATTGTGTATCAGTCCGTTAATTATTTTTGTGAGTTGGGACATGTTCAGTCTAGGGAATATTGTTGTGTTGGTACACCCTGGTTAGTGTGAGTTTGTGTTCTGTAGCCTCGTGAATATGTCAGTTCCAGTTGCCTGCTTGCACATATAAGCATTTAAACTGGATTCTTACTCCCTTTGCACCAGTAACAAAGACTCTTCACTCATTGAGGATCTAATTTGATTGATTTTTCGGAGTCAAATTGAACACGTAAGAATTCAAATTGGAGGATACGTTAATGGATAGCTACTTTCAAGTACTCTTCTTAACAAGGTTGAGAGTAGATTATGAAACTAAATCTAAGATCGTCAGTCCAACTACTGTTTCTTGTAATTATATAGGATCATTAGGTTGTGAAGGTCCCATGGGGGGATGGCCTAATGGTTGACACATAGACCAACCTGGAGATTCAGGTTTAAATTCCATATATAATACACGCTATGAGTCCTCCTGCTTGACAGATAACCTTGACAACGGTGGTTGTAGGACATATACGGTATGATGAAATAGTAAAAGTGCTTGCAAGCTGGACAAAGCACCCCTGATATCCGAAGAAAATATCAGTTGTGAAGTTTTAGTGATTAGAGTAACTAACATGTACAAAATGGAGAAAAGAAGGTTTGGTGCCCTTAGTTGGATGAGGGGGATTATCGAAGAAAATACATTTACTGTTCGTATACTAGTCATAATGACTTCCCCACCCTCTTTACCATATTTGATTTTTTGCACTACGCGTTTTACAAAATTTACCGCTACTGATTTGTACTTGAGTCTCGTTCAACTACATGCATCACAAGGTTTCGTCTTCTAAGTCCACCCCACCCCTCCCGTCCCCTCTTCCCCCAGGTGCTCCATTCTTTAACCAGCATTTCCTTTTACCAAGAGTATGTAAATGCTATTTATGTTTAATGTCTCTTCCAACTTTAATACTTTGCTAATGCCATAGGGTGAGTCCTTCAAAGACACCTGTGAGGCCACGAGTTCCTCGCCCCATGATGCATTAGGCAATCCTTTGTTGCTATCAAGGTCTGGAAAGAGTTGAGCGCAAGCCCTCTTGGATGACTTGAGGTCGCGATGGGAACATGAGACAAACGTTTGTTTCAGTAATTTCCGTCTTTTTCATTCCCACTTCCTTTCAGCTCGCGGTAACTCTTTATCATTACTGAAAATGACTGTTGACCCTGTTTAGCTTAAAGTTTTTAACAGAAATGTCACAACATTTTAGTAGCTCTATA</genome_strand>
        <mrna_strand>TCAAGTGCACTCTACCCGTATTGCTTTTGTTGAATTTGTTATG...................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAGTGCAATTTTGGCGTTGGACTGTTGCGGACAGATTTTGGGATCCCAACGCATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAGTCCTTCAAAGACACCTGTGAGGCCACGAGTTCCTCGCCCCATGATGCATTAGGCAATCCTTTGTTGCTATCAAGGTCTGGAAAGAGTTGAGCGCAAGCCCTCTTGGATGACTTGAGGTCGCGATGGGAACATGAGACAAACGTTTGTTTCAGTAATTTCCGTCTTTTTCATTCCCACTTCCTTTCAGCTCGCGGTAACTCTTTATCATTACTGAAAATGACTGTTGACCCTGTTTAGCTTAAAGTTTTTAACAGAAATGTCACAACATTTTAGTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0189M10-XfmMd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E269039" ref_strand="+" ref_description="SGN-E269039 [cLEI-16-H7]">
      <seq>gcttatggacaagttgttgactgcagagtttgtggtgatccccactctcgccttcgctttgcctttgtggaattcgccgatgaatactcagcaagaggttcacttagcctttgtggaacaatattagggttctctcctctgaaggtcctaccatcaaaaactgctattctacccgtgaatcctacattccttcctaggtctgaggatgagcgtgagatgtgtgccaggacagtctactgcacaaatattgataagaagctttctcaagctgatgtcaagaatttctttgaaacaagatgtggtgaggtgtctcgcctgaggcttttgggggatcaagtgcactctacccgtattgcttttgttgaatttgttatggctgagagtgcaattttggcgttggactgttgcggacagattttgggatcccaacgcatcagggtgagtccttcaaagacacctgtgaggccacgagttcctcgccccatgatgcattaggcaatcctttgttgctatcaaggtctggaaagagttgagcgcaagccctcttggatgacttgaggtcgcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0189M10-XfmMd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0189M10.2" temp_strand="-" temp_description="C07HBa0189M10.2  AC216425.2 htgs_phase:3 submitted_to_sgn_as:gi|167341761|gb|AC216425.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0189M10, complete sequence">
        <position start="33785" stop="30524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33481" g_stop="33409" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="85" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33408" i_stop="33322" i_length="87">
            <donor d_prob="0.052" d_score="1.00"/>
            <acceptor a_prob="0.670" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33321" g_stop="33209" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="198" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33208" i_stop="33069" i_length="140">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33068" g_stop="33009" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="258" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33008" i_stop="32841" i_length="168">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32840" g_stop="32793" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="306" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32792" i_stop="32710" i_length="83">
            <donor d_prob="0.634" d_score="1.00"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32709" g_stop="32641" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="375" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32640" i_stop="32254" i_length="387">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32253" g_stop="32192" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="437" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="32191" i_stop="30954" i_length="1238">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30953" g_stop="30824" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="567" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0189M10.2" gen_strand="-" ref_id="SGN-E269039" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0189M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33481" e_stop="33409"/>
          <exon e_start="33321" e_stop="33209"/>
          <exon e_start="33068" e_stop="33009"/>
          <exon e_start="32840" e_stop="32793"/>
          <exon e_start="32709" e_stop="32641"/>
          <exon e_start="32253" e_stop="32192"/>
          <exon e_start="30953" e_stop="30824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTTGACTGCAGAGTTTGTGGTGATCCCCACTCTCGCCTTCGCTTTGCCTTTGTGGAATTCGCCGATGAATGTAAGTTGGAGGGGATAGAAGTTTTTCTTAGTACTGCTGAACATTGAAAAGTGAAAACTAACTTGTCATGTGGAATCATTCTAACAGACTCAGCAAGAGGTTCACTTAGCCTTTGTGGAACAATATTAGGGTTCTCTCCTCTGAAGGTCCTACCATCAAAAACTGCTATTCTACCCGTGAATCCTACATTCCTTCCTAGGGTACGCAGAGATCTGTGCCGTTTTATTTACTTGTTTATGAATATGTGGAATAATTTTCTTGAGGTTCTATCTCATCTTATAGAAGTAAGGTCTTGGAACTAAATGCTTAGTTTTCCATTATGTGTACATGCTATGTGCAGTCTGAGGATGAGCGTGAGATGTGTGCCAGGACAGTCTACTGCACAAATATTGATAAGAAGGTATAAATCCCGCCTTTGAAATCTTCTGAAGTTCATTGCATGCTTTTTAGTACATCTTTCTTTGGGATTACCGCTGTCTGATCCATAGGTTATAATGATCTGGCTCAGGTCACTTTTTGTTTTCATAATCATCTGAAAGTTTAATGTATTGTATTCTATCCTGAACAGCTTTCTCAAGCTGATGTCAAGAATTTCTTTGAAACAAGATGTGGTGAGGTCAGTGTGATGTCTGAAACTTCTGACATATTAAGTTTAAAGAATGTTCGCCCAAGTGATGCTGAAGCTGCTCCTCTTTGCAGGTGTCTCGCCTGAGGCTTTTGGGGGATCAAGTGCACTCTACCCGTATTGCTTTTGTTGAATTTGTTATGGTACGTTGACTATCTTTTTCTTTTTCTTTGGATTTAAGTTGAGATATAGCATCAATAGGTACATTAAACACATCTATAGATTATAATGTCACTAGATGATGACTCTTCCTTATTTTAGTTTTTTGTGTCATGGAATTATCAGCACGATCTTCTTCTTTTTTGTAATTCTTCTGAATGTACTTCTCTTCCTCCCCTTGTTATTTTTGTGGCCGCAACCATCACTCTAGAGACGCCATTGAGCAGAGGAAGTTCCTATAAATTATCAGTGGTATATCTAAAGATGCTAGCCTGCAAAAAGCTGCAGCATGATATCAAATATTTCGTTTTGAAGATGATCTAAACAGGTGCTGGAATTATAATGTAAAAAGATACTTGATAAATGTGCAGGCTGAGAGTGCAATTTTGGCGTTGGACTGTTGCGGACAGATTTTGGGATCCCAACGCATCAGGTACTTCAGTTAGAAGTGTCTTTGATCCCAATTGATATTGCATCTTTTTAAGCTTGGTATCTCAGGTTCTATTTTCTCCCAAATAGGCACCAATCAACAGAGTCATGCACTCTAAGGTTCCCCTTGAACTGGAAAAGCTTCTTCTCTCTTTCTCCAAATGTATACTATCACATTGCCTGCTTTCTGCCTTTCTGTCATCTGAAAATGAAACTGAAAAATAATGCTACAGTACAGGCAGTGCATGCCAGATCCTAGATTGTGTATCAGTCCGTTAATTATTTTTGTGAGTTGGGACATGTTCAGTCTAGGGAATATTGTTGTGTTGGTACACCCTGGTTAGTGTGAGTTTGTGTTCTGTAGCCTCGTGAATATGTCAGTTCCAGTTGCCTGCTTGCACATATAAGCATTTAAACTGGATTCTTACTCCCTTTGCACCAGTAACAAAGACTCTTCACTCATTGAGGATCTAATTTGATTGATTTTTCGGAGTCAAATTGAACACGTAAGAATTCAAATTGGAGGATACGTTAATGGATAGCTACTTTCAAGTACTCTTCTTAACAAGGTTGAGAGTAGATTATGAAACTAAATCTAAGATCGTCAGTCCAACTACTGTTTCTTGTAATTATATAGGATCATTAGGTTGTGAAGGTCCCATGGGGGGATGGCCTAATGGTTGACACATAGACCAACCTGGAGATTCAGGTTTAAATTCCATATATAATACACGCTATGAGTCCTCCTGCTTGACAGATAACCTTGACAACGGTGGTTGTAGGACATATACGGTATGATGAAATAGTAAAAGTGCTTGCAAGCTGGACAAAGCACCCCTGATATCCGAAGAAAATATCAGTTGTGAAGTTTTAGTGATTAGAGTAACTAACATGTACAAAATGGAGAAAAGAAGGTTTGGTGCCCTTAGTTGGATGAGGGGGATTATCGAAGAAAATACATTTACTGTTCGTATACTAGTCATAATGACTTCCCCACCCTCTTTACCATATTTGATTTTTTGCACTACGCGTTTTACAAAATTTACCGCTACTGATTTGTACTTGAGTCTCGTTCAACTACATGCATCACAAGGTTTCGTCTTCTAAGTCCACCCCACCCCTCCCGTCCCCTCTTCCCCCAGGTGCTCCATTCTTTAACCAGCATTTCCTTTTACCAAGAGTATGTAAATGCTATTTATGTTTAATGTCTCTTCCAACTTTAATACTTTGCTAATGCCATAGGGTGAGTCCTTCAAAGACACCTGTGAGGCCACGAGTTCCTCGCCCCATGATGCATTAGGCAATCCTTTGTTGCTATCAAGGTCTGGAAAGAGTTGAGCGCAAGCCCTCTTGGATGACTTGAGGTCGCGAT</genome_strand>
        <mrna_strand>GTTGTTGACTGCAGAGTTTGTGGTGATCCCCACTCTCGCCTTCGCTTTGCCTTTGTGGAATTCGCCGATGAAT.......................................................................................ACTCAGCAAGAGGTTCACTTAGCCTTTGTGGAACAATATTAGGGTTCTCTCCTCTGAAGGTCCTACCATCAAAAACTGCTATTCTACCCGTGAATCCTACATTCCTTCCTAGG............................................................................................................................................TCTGAGGATGAGCGTGAGATGTGTGCCAGGACAGTCTACTGCACAAATATTGATAAGAAG........................................................................................................................................................................CTTTCTCAAGCTGATGTCAAGAATTTCTTTGAAACAAGATGTGGTGAG...................................................................................GTGTCTCGCCTGAGGCTTTTGGGGGATCAAGTGCACTCTACCCGTATTGCTTTTGTTGAATTTGTTATG...................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAGTGCAATTTTGGCGTTGGACTGTTGCGGACAGATTTTGGGATCCCAACGCATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAGTCCTTCAAAGACACCTGTGAGGCCACGAGTTCCTCGCCCCATGATGCATTAGGCAATCCTTTGTTGCTATCAAGGTCTGGAAAGAGTTGAGCGCAAGCCCTCTTGGATGACTTGAGGTCGCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0189M10-XfmMd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250450" ref_strand="+" ref_description="SGN-E250450 [cLEG-18-E15]">
      <seq>tgcctttgtggaattcgccgatgaatactctgcaagaggttcacttatcctttgcggaacaatattagggttctctcctctgaaggtcctaccatcaaaaactgctattctacccgtgaatcctacattccttcctatgtctgaggatgagcgtgatatgtgtgccgagacatgctacacctcagacattggtgagaagctctgtgaggcacctgtcaagaatctctttgaaacaagatgtggtgaggtgtctcgcctgaggcttttgggggatcaagtgcactctacccgtattgcttttgttgaatttgttatggctgagagtgcaattttggcgttggactgttgcggacagattttgggatcccgacgcatcagggtgagttcttcaaagacacctgtgaggccacgagttcctctccccatgatgcattatgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0189M10-XfmMd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0189M10.2" temp_strand="-" temp_description="C07HBa0189M10.2  AC216425.2 htgs_phase:3 submitted_to_sgn_as:gi|167341761|gb|AC216425.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0189M10, complete sequence">
        <position start="33734" stop="30592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33434" g_stop="33409" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33408" i_stop="33322" i_length="87">
            <donor d_prob="0.052" d_score="0.00"/>
            <acceptor a_prob="0.670" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33321" g_stop="33209" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="139" r_length="113" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33208" i_stop="33069" i_length="140">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33068" g_stop="33009" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="199" r_length="60" r_score="0.800"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33008" i_stop="32841" i_length="168">
            <donor d_prob="0.996" d_score="0.76"/>
            <acceptor a_prob="0.978" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32840" g_stop="32793" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="247" r_length="48" r_score="0.833"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32792" i_stop="32710" i_length="83">
            <donor d_prob="0.634" d_score="0.83"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32709" g_stop="32641" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="316" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32640" i_stop="32254" i_length="387">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32253" g_stop="32192" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="378" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="32191" i_stop="30954" i_length="1238">
            <donor d_prob="0.881" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30953" g_stop="30892" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="440" r_length="62" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0189M10.2" gen_strand="-" ref_id="SGN-E250450" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0189M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33434" e_stop="33409"/>
          <exon e_start="33321" e_stop="33209"/>
          <exon e_start="33068" e_stop="33009"/>
          <exon e_start="32840" e_stop="32793"/>
          <exon e_start="32709" e_stop="32641"/>
          <exon e_start="32253" e_stop="32192"/>
          <exon e_start="30953" e_stop="30892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCTTTGTGGAATTCGCCGATGAATGTAAGTTGGAGGGGATAGAAGTTTTTCTTAGTACTGCTGAACATTGAAAAGTGAAAACTAACTTGTCATGTGGAATCATTCTAACAGACTCAGCAAGAGGTTCACTTAGCCTTTGTGGAACAATATTAGGGTTCTCTCCTCTGAAGGTCCTACCATCAAAAACTGCTATTCTACCCGTGAATCCTACATTCCTTCCTAGGGTACGCAGAGATCTGTGCCGTTTTATTTACTTGTTTATGAATATGTGGAATAATTTTCTTGAGGTTCTATCTCATCTTATAGAAGTAAGGTCTTGGAACTAAATGCTTAGTTTTCCATTATGTGTACATGCTATGTGCAGTCTGAGGATGAGCGTGAGATGTGTGCCAGGACAGTCTACTGCACAAATATTGATAAGAAGGTATAAATCCCGCCTTTGAAATCTTCTGAAGTTCATTGCATGCTTTTTAGTACATCTTTCTTTGGGATTACCGCTGTCTGATCCATAGGTTATAATGATCTGGCTCAGGTCACTTTTTGTTTTCATAATCATCTGAAAGTTTAATGTATTGTATTCTATCCTGAACAGCTTTCTCAAGCTGATGTCAAGAATTTCTTTGAAACAAGATGTGGTGAGGTCAGTGTGATGTCTGAAACTTCTGACATATTAAGTTTAAAGAATGTTCGCCCAAGTGATGCTGAAGCTGCTCCTCTTTGCAGGTGTCTCGCCTGAGGCTTTTGGGGGATCAAGTGCACTCTACCCGTATTGCTTTTGTTGAATTTGTTATGGTACGTTGACTATCTTTTTCTTTTTCTTTGGATTTAAGTTGAGATATAGCATCAATAGGTACATTAAACACATCTATAGATTATAATGTCACTAGATGATGACTCTTCCTTATTTTAGTTTTTTGTGTCATGGAATTATCAGCACGATCTTCTTCTTTTTTGTAATTCTTCTGAATGTACTTCTCTTCCTCCCCTTGTTATTTTTGTGGCCGCAACCATCACTCTAGAGACGCCATTGAGCAGAGGAAGTTCCTATAAATTATCAGTGGTATATCTAAAGATGCTAGCCTGCAAAAAGCTGCAGCATGATATCAAATATTTCGTTTTGAAGATGATCTAAACAGGTGCTGGAATTATAATGTAAAAAGATACTTGATAAATGTGCAGGCTGAGAGTGCAATTTTGGCGTTGGACTGTTGCGGACAGATTTTGGGATCCCAACGCATCAGGTACTTCAGTTAGAAGTGTCTTTGATCCCAATTGATATTGCATCTTTTTAAGCTTGGTATCTCAGGTTCTATTTTCTCCCAAATAGGCACCAATCAACAGAGTCATGCACTCTAAGGTTCCCCTTGAACTGGAAAAGCTTCTTCTCTCTTTCTCCAAATGTATACTATCACATTGCCTGCTTTCTGCCTTTCTGTCATCTGAAAATGAAACTGAAAAATAATGCTACAGTACAGGCAGTGCATGCCAGATCCTAGATTGTGTATCAGTCCGTTAATTATTTTTGTGAGTTGGGACATGTTCAGTCTAGGGAATATTGTTGTGTTGGTACACCCTGGTTAGTGTGAGTTTGTGTTCTGTAGCCTCGTGAATATGTCAGTTCCAGTTGCCTGCTTGCACATATAAGCATTTAAACTGGATTCTTACTCCCTTTGCACCAGTAACAAAGACTCTTCACTCATTGAGGATCTAATTTGATTGATTTTTCGGAGTCAAATTGAACACGTAAGAATTCAAATTGGAGGATACGTTAATGGATAGCTACTTTCAAGTACTCTTCTTAACAAGGTTGAGAGTAGATTATGAAACTAAATCTAAGATCGTCAGTCCAACTACTGTTTCTTGTAATTATATAGGATCATTAGGTTGTGAAGGTCCCATGGGGGGATGGCCTAATGGTTGACACATAGACCAACCTGGAGATTCAGGTTTAAATTCCATATATAATACACGCTATGAGTCCTCCTGCTTGACAGATAACCTTGACAACGGTGGTTGTAGGACATATACGGTATGATGAAATAGTAAAAGTGCTTGCAAGCTGGACAAAGCACCCCTGATATCCGAAGAAAATATCAGTTGTGAAGTTTTAGTGATTAGAGTAACTAACATGTACAAAATGGAGAAAAGAAGGTTTGGTGCCCTTAGTTGGATGAGGGGGATTATCGAAGAAAATACATTTACTGTTCGTATACTAGTCATAATGACTTCCCCACCCTCTTTACCATATTTGATTTTTTGCACTACGCGTTTTACAAAATTTACCGCTACTGATTTGTACTTGAGTCTCGTTCAACTACATGCATCACAAGGTTTCGTCTTCTAAGTCCACCCCACCCCTCCCGTCCCCTCTTCCCCCAGGTGCTCCATTCTTTAACCAGCATTTCCTTTTACCAAGAGTATGTAAATGCTATTTATGTTTAATGTCTCTTCCAACTTTAATACTTTGCTAATGCCATAGGGTGAGTCCTTCAAAGACACCTGTGAGGCCACGAGTTCCTCGCCCCATGATGCATTAGGCAA</genome_strand>
        <mrna_strand>TGCCTTTGTGGAATTCGCCGATGAAT.......................................................................................ACTCTGCAAGAGGTTCACTTATCCTTTGCGGAACAATATTAGGGTTCTCTCCTCTGAAGGTCCTACCATCAAAAACTGCTATTCTACCCGTGAATCCTACATTCCTTCCTATG............................................................................................................................................TCTGAGGATGAGCGTGATATGTGTGCCGAGACATGCTACACCTCAGACATTGGTGAGAAG........................................................................................................................................................................CTCTGTGAGGCACCTGTCAAGAATCTCTTTGAAACAAGATGTGGTGAG...................................................................................GTGTCTCGCCTGAGGCTTTTGGGGGATCAAGTGCACTCTACCCGTATTGCTTTTGTTGAATTTGTTATG...................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAGTGCAATTTTGGCGTTGGACTGTTGCGGACAGATTTTGGGATCCCGACGCATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAGTTCTTCAAAGACACCTGTGAGGCCACGAGTTCCTCTCCCCATGATGCATTATGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0189M10-XfmMd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E688650" ref_strand="+" ref_description="SGN-E688650 [t3_tus_54_E23]">
      <seq>gcgtcttgctggattatttagcgcttatggacaagttgttgactgcagagtttgtggtgatccccactctcgccttcgctttgcctttgtggaattcgccgatgaatactcagcaagaggttcacttagcctttgtggaacaatattagggttctctcctctgaaggtcctaccatcaaaaactgctattctacccgtgaatcctacattccttcctaggtctgaggatgagcgtgagatgtgtgccaggacagtctactgcacaaatattgataagaagctttctcaagctgatgtcaagaatttctttgaaacaagatgtggtgaggtgtctcgcctgaggcttttgggggatcaagtgcactctacccgtattgcttttgttgaatttgttatggctgagagtgcaattttggcgttggactgttgcggacagattttgggatcccaacgcatcanggtgagtccttcaaagacacctgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0189M10-XfmMd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0189M10.2" temp_strand="-" temp_description="C07HBa0189M10.2  AC216425.2 htgs_phase:3 submitted_to_sgn_as:gi|167341761|gb|AC216425.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0189M10, complete sequence">
        <position start="36069" stop="30629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35769" g_stop="35736" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35735" i_stop="33482" i_length="2254">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33481" g_stop="33409" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="107" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33408" i_stop="33322" i_length="87">
            <donor d_prob="0.052" d_score="1.00"/>
            <acceptor a_prob="0.670" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33321" g_stop="33209" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="220" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33208" i_stop="33069" i_length="140">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33068" g_stop="33009" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="280" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33008" i_stop="32841" i_length="168">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32840" g_stop="32793" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="328" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32792" i_stop="32710" i_length="83">
            <donor d_prob="0.634" d_score="1.00"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32709" g_stop="32641" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="397" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="32640" i_stop="32254" i_length="387">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32253" g_stop="32192" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="459" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="32191" i_stop="30954" i_length="1238">
            <donor d_prob="0.881" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="30953" g_stop="30929" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="484" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0189M10.2" gen_strand="-" ref_id="SGN-E688650" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0189M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35769" e_stop="35736"/>
          <exon e_start="33481" e_stop="33409"/>
          <exon e_start="33321" e_stop="33209"/>
          <exon e_start="33068" e_stop="33009"/>
          <exon e_start="32840" e_stop="32793"/>
          <exon e_start="32709" e_stop="32641"/>
          <exon e_start="32253" e_stop="32192"/>
          <exon e_start="30953" e_stop="30929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTCTTGCTGGATTATTTAGCGCTTATGGACAAGTAAGTGATGATTCTCTTCTGGACATTCTTGTGATTCATTATGTTAGATACTTGAGTGCTTTAAGTGCAGAGTGGCGCTTCTTTCAATTAATTGAGAAACCTAAAAACCATTAATGCGCTAAGTGTCATGCTGAAGCAGATGGGTGCCTATAGCTTGTGTTTTACTCCATAGTATATGTCTCAAGTCCTAGTTTGTTGCTCTATCTGCATTGCATAGGATGTTTGAATTCCATGTCCTGCAAATAAGCAATAACCTTTAGACTGTCTAATATTATGACTGAGCTATGATTAGCATTAATTGTCAGGTTGCTTAAGACATTAGTATCATTGAAATATCTTGATCATTGACATATGCTTCAAATTACTGATGACATGCAGCAAACATACCTTTTGCTATCTTTGGTAGAGGGGTGAGTGTTCTTTCTATCTCTTGGCTGTGGGTACTAGCATAATAACATTGTGCATACTATTCTGAAATATTGACCAGGCCGAGGTACTTATTTTCTTGTCAATCTCCATAAAGAGTCAAAAAGGGTATCTCAAAGTTAATGTTGCCTAGTCTCTGGTATTATGTAATTTATTTTCTGGTCATGCCAATTCAGTGTCAAAAAAGGTAGCTCAAAGTTGTTCTTCAAATTCCCCATCAGCTTGTTAGAGTTAAATAGTAGCTGCTTCGTAGAGTTGATTCTGTCAGTCTAATCTCCTGAGAAATTCTCGACAAGCATGGGAAAGAGGAAGCTGAAATGAGGAGGTACAAAACTAAAGCAGAAGCCTAAAGGTGAAGCTGGTAGATGCACAAGCAAACTATATATGTTGCTTGGACTATCCAAAAAGAAGTCCGGTGTGCGCAGGATCCTTAAAAAGTAATGCATTTTTGGAGGACTCGATACGCGTACAACAATATTTTTGGAGAGTCCGGTGCAACATAGCAAGAAAAACCTAATAACTTTAACACAACAAAAGATTGATTCATATTACACTTATTTTACCTTTACACGGATATAAGCTGCCTCCTTTCATATTCCTCTTAGGCTGATCCTGAACACCAAGGAGACTTCTATCATTTCACTCCTAGGACAAATCACAGGTGGGATTTGGATTTTCTTTAAAAACTGTACTTTGCTTGACTAAAGACATAAGTAGTTGCTTAACTAAAGACATAAGTAGACTATGAATATTTACTGTAAGGACTAAGGATGTAATCACTGCTACCTTAAAATTAATAAAATAGAGTATATCTGATAGCCAGTGAGAGCCAGTTACTAATTAAGAAGCATGTAAAGATGAACCTAAAGTATTTCTAAATTATATAAAGTACCATATCTTATTGTTCTTCCACTTACATCCTGCATCTCTGAGTGGAATTTAAATTTCTGTGTTTTTGTTTTGGCTTACAGTTTTTGGATATCTTTAACGTACGTCTTACATTTTTACTTAAATCAACATATTAGGAAGACTCTAAAGAAGGTTACAATATAAAGAAGCAATTAGATATTGAAATGTTGAACTACAACATCTAGCTCGAAAGAGCACTACTTCGCTTGTTATTTCTCTCTTCTTTCTTTCTTTTCTTACACTTTGGTGTCATAATAACGTGCTTTAACTGTCTTTTACGCACCAGCGATGTGCGCTGATGCTTATTCTGGTTAAAGACTGTTTGAATTAATATACATCAGTACTTTACTTTTGTCTCCTTACTTGCATCATCAATTGAAGAGCTTCTTTACACTTTGGTTATGGTTTATTTTACTGTTTAATATGTTTGGCTTATGATTATTGCCCTGCAAGACCATTATCCGTTTCATGGTTTGTCTTTCCAAAAATACAGATACGCCATACAATTATTTTTACTATTTATGGGACTGTCTAACAAAAAGTTTGGTTTGTATGAAACTTGGAAAGCTAGATTGAGTTGCTTGTTGTCAGTCTGTGAGGTGTTGGTGAGTCACGATGCTTGTGTTTCTGTTTGACATAGTTGGACTAGTTTCCTTTTAATTTGCTAAGTTTCATGCCATTTTGACACAATTGAATTGTTCTTTATCCTCATTTCTTTCTCAAACTCGACTGACGTTAATTCATATTTGTGTTTTTGGTGAAAATTCCTGTGTAATTACACTGGGTGTGTTGTTGTTGCTTAGGTGAAAATTGTATGGGGTATCTATTGAGGAGTGTAATAGTGGTCTTTCTATAATAATAATAATAAAAAAAGAGTGTAATGTTGGTGTGTTTTCTTTTGTCTACGTTTGCTCCATAGGTTGTTGACTGCAGAGTTTGTGGTGATCCCCACTCTCGCCTTCGCTTTGCCTTTGTGGAATTCGCCGATGAATGTAAGTTGGAGGGGATAGAAGTTTTTCTTAGTACTGCTGAACATTGAAAAGTGAAAACTAACTTGTCATGTGGAATCATTCTAACAGACTCAGCAAGAGGTTCACTTAGCCTTTGTGGAACAATATTAGGGTTCTCTCCTCTGAAGGTCCTACCATCAAAAACTGCTATTCTACCCGTGAATCCTACATTCCTTCCTAGGGTACGCAGAGATCTGTGCCGTTTTATTTACTTGTTTATGAATATGTGGAATAATTTTCTTGAGGTTCTATCTCATCTTATAGAAGTAAGGTCTTGGAACTAAATGCTTAGTTTTCCATTATGTGTACATGCTATGTGCAGTCTGAGGATGAGCGTGAGATGTGTGCCAGGACAGTCTACTGCACAAATATTGATAAGAAGGTATAAATCCCGCCTTTGAAATCTTCTGAAGTTCATTGCATGCTTTTTAGTACATCTTTCTTTGGGATTACCGCTGTCTGATCCATAGGTTATAATGATCTGGCTCAGGTCACTTTTTGTTTTCATAATCATCTGAAAGTTTAATGTATTGTATTCTATCCTGAACAGCTTTCTCAAGCTGATGTCAAGAATTTCTTTGAAACAAGATGTGGTGAGGTCAGTGTGATGTCTGAAACTTCTGACATATTAAGTTTAAAGAATGTTCGCCCAAGTGATGCTGAAGCTGCTCCTCTTTGCAGGTGTCTCGCCTGAGGCTTTTGGGGGATCAAGTGCACTCTACCCGTATTGCTTTTGTTGAATTTGTTATGGTACGTTGACTATCTTTTTCTTTTTCTTTGGATTTAAGTTGAGATATAGCATCAATAGGTACATTAAACACATCTATAGATTATAATGTCACTAGATGATGACTCTTCCTTATTTTAGTTTTTTGTGTCATGGAATTATCAGCACGATCTTCTTCTTTTTTGTAATTCTTCTGAATGTACTTCTCTTCCTCCCCTTGTTATTTTTGTGGCCGCAACCATCACTCTAGAGACGCCATTGAGCAGAGGAAGTTCCTATAAATTATCAGTGGTATATCTAAAGATGCTAGCCTGCAAAAAGCTGCAGCATGATATCAAATATTTCGTTTTGAAGATGATCTAAACAGGTGCTGGAATTATAATGTAAAAAGATACTTGATAAATGTGCAGGCTGAGAGTGCAATTTTGGCGTTGGACTGTTGCGGACAGATTTTGGGATCCCAACGCATCAGGTACTTCAGTTAGAAGTGTCTTTGATCCCAATTGATATTGCATCTTTTTAAGCTTGGTATCTCAGGTTCTATTTTCTCCCAAATAGGCACCAATCAACAGAGTCATGCACTCTAAGGTTCCCCTTGAACTGGAAAAGCTTCTTCTCTCTTTCTCCAAATGTATACTATCACATTGCCTGCTTTCTGCCTTTCTGTCATCTGAAAATGAAACTGAAAAATAATGCTACAGTACAGGCAGTGCATGCCAGATCCTAGATTGTGTATCAGTCCGTTAATTATTTTTGTGAGTTGGGACATGTTCAGTCTAGGGAATATTGTTGTGTTGGTACACCCTGGTTAGTGTGAGTTTGTGTTCTGTAGCCTCGTGAATATGTCAGTTCCAGTTGCCTGCTTGCACATATAAGCATTTAAACTGGATTCTTACTCCCTTTGCACCAGTAACAAAGACTCTTCACTCATTGAGGATCTAATTTGATTGATTTTTCGGAGTCAAATTGAACACGTAAGAATTCAAATTGGAGGATACGTTAATGGATAGCTACTTTCAAGTACTCTTCTTAACAAGGTTGAGAGTAGATTATGAAACTAAATCTAAGATCGTCAGTCCAACTACTGTTTCTTGTAATTATATAGGATCATTAGGTTGTGAAGGTCCCATGGGGGGATGGCCTAATGGTTGACACATAGACCAACCTGGAGATTCAGGTTTAAATTCCATATATAATACACGCTATGAGTCCTCCTGCTTGACAGATAACCTTGACAACGGTGGTTGTAGGACATATACGGTATGATGAAATAGTAAAAGTGCTTGCAAGCTGGACAAAGCACCCCTGATATCCGAAGAAAATATCAGTTGTGAAGTTTTAGTGATTAGAGTAACTAACATGTACAAAATGGAGAAAAGAAGGTTTGGTGCCCTTAGTTGGATGAGGGGGATTATCGAAGAAAATACATTTACTGTTCGTATACTAGTCATAATGACTTCCCCACCCTCTTTACCATATTTGATTTTTTGCACTACGCGTTTTACAAAATTTACCGCTACTGATTTGTACTTGAGTCTCGTTCAACTACATGCATCACAAGGTTTCGTCTTCTAAGTCCACCCCACCCCTCCCGTCCCCTCTTCCCCCAGGTGCTCCATTCTTTAACCAGCATTTCCTTTTACCAAGAGTATGTAAATGCTATTTATGTTTAATGTCTCTTCCAACTTTAATACTTTGCTAATGCCATAGGGTGAGTCCTTCAAAGACACCTGTG</genome_strand>
        <mrna_strand>GCGTCTTGCTGGATTATTTAGCGCTTATGGACAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGACTGCAGAGTTTGTGGTGATCCCCACTCTCGCCTTCGCTTTGCCTTTGTGGAATTCGCCGATGAAT.......................................................................................ACTCAGCAAGAGGTTCACTTAGCCTTTGTGGAACAATATTAGGGTTCTCTCCTCTGAAGGTCCTACCATCAAAAACTGCTATTCTACCCGTGAATCCTACATTCCTTCCTAGG............................................................................................................................................TCTGAGGATGAGCGTGAGATGTGTGCCAGGACAGTCTACTGCACAAATATTGATAAGAAG........................................................................................................................................................................CTTTCTCAAGCTGATGTCAAGAATTTCTTTGAAACAAGATGTGGTGAG...................................................................................GTGTCTCGCCTGAGGCTTTTGGGGGATCAAGTGCACTCTACCCGTATTGCTTTTGTTGAATTTGTTATG...................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAGTGCAATTTTGGCGTTGGACTGTTGCGGACAGATTTTGGGATCCCAACGCATCAN......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAGTCCTTCAAAGACACCTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0189M10-XfmMd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550905" ref_strand="+" ref_description="SGN-E550905 [TUS-54-E23]">
      <seq>gcgtcttgctggattatttagcgcttatggacaagttgttgactgcagagtttgtggtgatccccactctcgccttcgctttgcctttgtggaattcgccgatgaatactcagcaagaggttcacttagcctttgtggaacaatattagggttctctcctctgaaggtcctaccatcaaaaactgctattctacccgtgaatcctacattccttcctaggtctgaggatgagcgtgagatgtgtgccaggacagtctactgcacaaatattgataagaagctttctcaagctgatgtcaagaatttctttgaaacaagatgtggtgaggtgtctcgcctgaggcttttgggggatcaagtgcactctacccgtattgcttttgttgaatttgttatggctgagagtgcaattttggcgttggactgttgcggacagattttgggatcccaacgcatcanggtgagtcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0189M10-XfmMd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0189M10.2" temp_strand="-" temp_description="C07HBa0189M10.2  AC216425.2 htgs_phase:3 submitted_to_sgn_as:gi|167341761|gb|AC216425.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0189M10, complete sequence">
        <position start="36069" stop="31885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35769" g_stop="35736" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35735" i_stop="33482" i_length="2254">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33481" g_stop="33409" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="107" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33408" i_stop="33322" i_length="87">
            <donor d_prob="0.052" d_score="1.00"/>
            <acceptor a_prob="0.670" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33321" g_stop="33209" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="220" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33208" i_stop="33069" i_length="140">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33068" g_stop="33009" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="280" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33008" i_stop="32841" i_length="168">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32840" g_stop="32793" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="328" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32792" i_stop="32710" i_length="83">
            <donor d_prob="0.634" d_score="1.00"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32709" g_stop="32641" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="397" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="32640" i_stop="32254" i_length="387">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32253" g_stop="32192" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="459" r_length="62" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0189M10.2" gen_strand="-" ref_id="SGN-E550905" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0189M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35769" e_stop="35736"/>
          <exon e_start="33481" e_stop="33409"/>
          <exon e_start="33321" e_stop="33209"/>
          <exon e_start="33068" e_stop="33009"/>
          <exon e_start="32840" e_stop="32793"/>
          <exon e_start="32709" e_stop="32641"/>
          <exon e_start="32253" e_stop="32192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTCTTGCTGGATTATTTAGCGCTTATGGACAAGTAAGTGATGATTCTCTTCTGGACATTCTTGTGATTCATTATGTTAGATACTTGAGTGCTTTAAGTGCAGAGTGGCGCTTCTTTCAATTAATTGAGAAACCTAAAAACCATTAATGCGCTAAGTGTCATGCTGAAGCAGATGGGTGCCTATAGCTTGTGTTTTACTCCATAGTATATGTCTCAAGTCCTAGTTTGTTGCTCTATCTGCATTGCATAGGATGTTTGAATTCCATGTCCTGCAAATAAGCAATAACCTTTAGACTGTCTAATATTATGACTGAGCTATGATTAGCATTAATTGTCAGGTTGCTTAAGACATTAGTATCATTGAAATATCTTGATCATTGACATATGCTTCAAATTACTGATGACATGCAGCAAACATACCTTTTGCTATCTTTGGTAGAGGGGTGAGTGTTCTTTCTATCTCTTGGCTGTGGGTACTAGCATAATAACATTGTGCATACTATTCTGAAATATTGACCAGGCCGAGGTACTTATTTTCTTGTCAATCTCCATAAAGAGTCAAAAAGGGTATCTCAAAGTTAATGTTGCCTAGTCTCTGGTATTATGTAATTTATTTTCTGGTCATGCCAATTCAGTGTCAAAAAAGGTAGCTCAAAGTTGTTCTTCAAATTCCCCATCAGCTTGTTAGAGTTAAATAGTAGCTGCTTCGTAGAGTTGATTCTGTCAGTCTAATCTCCTGAGAAATTCTCGACAAGCATGGGAAAGAGGAAGCTGAAATGAGGAGGTACAAAACTAAAGCAGAAGCCTAAAGGTGAAGCTGGTAGATGCACAAGCAAACTATATATGTTGCTTGGACTATCCAAAAAGAAGTCCGGTGTGCGCAGGATCCTTAAAAAGTAATGCATTTTTGGAGGACTCGATACGCGTACAACAATATTTTTGGAGAGTCCGGTGCAACATAGCAAGAAAAACCTAATAACTTTAACACAACAAAAGATTGATTCATATTACACTTATTTTACCTTTACACGGATATAAGCTGCCTCCTTTCATATTCCTCTTAGGCTGATCCTGAACACCAAGGAGACTTCTATCATTTCACTCCTAGGACAAATCACAGGTGGGATTTGGATTTTCTTTAAAAACTGTACTTTGCTTGACTAAAGACATAAGTAGTTGCTTAACTAAAGACATAAGTAGACTATGAATATTTACTGTAAGGACTAAGGATGTAATCACTGCTACCTTAAAATTAATAAAATAGAGTATATCTGATAGCCAGTGAGAGCCAGTTACTAATTAAGAAGCATGTAAAGATGAACCTAAAGTATTTCTAAATTATATAAAGTACCATATCTTATTGTTCTTCCACTTACATCCTGCATCTCTGAGTGGAATTTAAATTTCTGTGTTTTTGTTTTGGCTTACAGTTTTTGGATATCTTTAACGTACGTCTTACATTTTTACTTAAATCAACATATTAGGAAGACTCTAAAGAAGGTTACAATATAAAGAAGCAATTAGATATTGAAATGTTGAACTACAACATCTAGCTCGAAAGAGCACTACTTCGCTTGTTATTTCTCTCTTCTTTCTTTCTTTTCTTACACTTTGGTGTCATAATAACGTGCTTTAACTGTCTTTTACGCACCAGCGATGTGCGCTGATGCTTATTCTGGTTAAAGACTGTTTGAATTAATATACATCAGTACTTTACTTTTGTCTCCTTACTTGCATCATCAATTGAAGAGCTTCTTTACACTTTGGTTATGGTTTATTTTACTGTTTAATATGTTTGGCTTATGATTATTGCCCTGCAAGACCATTATCCGTTTCATGGTTTGTCTTTCCAAAAATACAGATACGCCATACAATTATTTTTACTATTTATGGGACTGTCTAACAAAAAGTTTGGTTTGTATGAAACTTGGAAAGCTAGATTGAGTTGCTTGTTGTCAGTCTGTGAGGTGTTGGTGAGTCACGATGCTTGTGTTTCTGTTTGACATAGTTGGACTAGTTTCCTTTTAATTTGCTAAGTTTCATGCCATTTTGACACAATTGAATTGTTCTTTATCCTCATTTCTTTCTCAAACTCGACTGACGTTAATTCATATTTGTGTTTTTGGTGAAAATTCCTGTGTAATTACACTGGGTGTGTTGTTGTTGCTTAGGTGAAAATTGTATGGGGTATCTATTGAGGAGTGTAATAGTGGTCTTTCTATAATAATAATAATAAAAAAAGAGTGTAATGTTGGTGTGTTTTCTTTTGTCTACGTTTGCTCCATAGGTTGTTGACTGCAGAGTTTGTGGTGATCCCCACTCTCGCCTTCGCTTTGCCTTTGTGGAATTCGCCGATGAATGTAAGTTGGAGGGGATAGAAGTTTTTCTTAGTACTGCTGAACATTGAAAAGTGAAAACTAACTTGTCATGTGGAATCATTCTAACAGACTCAGCAAGAGGTTCACTTAGCCTTTGTGGAACAATATTAGGGTTCTCTCCTCTGAAGGTCCTACCATCAAAAACTGCTATTCTACCCGTGAATCCTACATTCCTTCCTAGGGTACGCAGAGATCTGTGCCGTTTTATTTACTTGTTTATGAATATGTGGAATAATTTTCTTGAGGTTCTATCTCATCTTATAGAAGTAAGGTCTTGGAACTAAATGCTTAGTTTTCCATTATGTGTACATGCTATGTGCAGTCTGAGGATGAGCGTGAGATGTGTGCCAGGACAGTCTACTGCACAAATATTGATAAGAAGGTATAAATCCCGCCTTTGAAATCTTCTGAAGTTCATTGCATGCTTTTTAGTACATCTTTCTTTGGGATTACCGCTGTCTGATCCATAGGTTATAATGATCTGGCTCAGGTCACTTTTTGTTTTCATAATCATCTGAAAGTTTAATGTATTGTATTCTATCCTGAACAGCTTTCTCAAGCTGATGTCAAGAATTTCTTTGAAACAAGATGTGGTGAGGTCAGTGTGATGTCTGAAACTTCTGACATATTAAGTTTAAAGAATGTTCGCCCAAGTGATGCTGAAGCTGCTCCTCTTTGCAGGTGTCTCGCCTGAGGCTTTTGGGGGATCAAGTGCACTCTACCCGTATTGCTTTTGTTGAATTTGTTATGGTACGTTGACTATCTTTTTCTTTTTCTTTGGATTTAAGTTGAGATATAGCATCAATAGGTACATTAAACACATCTATAGATTATAATGTCACTAGATGATGACTCTTCCTTATTTTAGTTTTTTGTGTCATGGAATTATCAGCACGATCTTCTTCTTTTTTGTAATTCTTCTGAATGTACTTCTCTTCCTCCCCTTGTTATTTTTGTGGCCGCAACCATCACTCTAGAGACGCCATTGAGCAGAGGAAGTTCCTATAAATTATCAGTGGTATATCTAAAGATGCTAGCCTGCAAAAAGCTGCAGCATGATATCAAATATTTCGTTTTGAAGATGATCTAAACAGGTGCTGGAATTATAATGTAAAAAGATACTTGATAAATGTGCAGGCTGAGAGTGCAATTTTGGCGTTGGACTGTTGCGGACAGATTTTGGGATCCCAACGCATCAG</genome_strand>
        <mrna_strand>GCGTCTTGCTGGATTATTTAGCGCTTATGGACAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGACTGCAGAGTTTGTGGTGATCCCCACTCTCGCCTTCGCTTTGCCTTTGTGGAATTCGCCGATGAAT.......................................................................................ACTCAGCAAGAGGTTCACTTAGCCTTTGTGGAACAATATTAGGGTTCTCTCCTCTGAAGGTCCTACCATCAAAAACTGCTATTCTACCCGTGAATCCTACATTCCTTCCTAGG............................................................................................................................................TCTGAGGATGAGCGTGAGATGTGTGCCAGGACAGTCTACTGCACAAATATTGATAAGAAG........................................................................................................................................................................CTTTCTCAAGCTGATGTCAAGAATTTCTTTGAAACAAGATGTGGTGAG...................................................................................GTGTCTCGCCTGAGGCTTTTGGGGGATCAAGTGCACTCTACCCGTATTGCTTTTGTTGAATTTGTTATG...................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAGTGCAATTTTGGCGTTGGACTGTTGCGGACAGATTTTGGGATCCCAACGCATCAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0189M10-XfmMd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371341" ref_strand="+" ref_description="SGN-E371341 [TUS-27-C23]">
      <seq>gcttatggacaagttgttgactgcagagtttgtggtgatccccactctcgccttcgctttgcctttgtggaattcgccgatgaatactcagcaagaggttcacttagcctttgtggaacaatattagggttctctcctctgaaggtcctaccatcaaaaactgctattctacccgtgaatcctacattccttcctaggtctgaggatgagcgtgagatgtgtgccaggacagtctactgcacaaatattgataagaagctttctcaagctgatgtcaagaatttctttgaaacaagatgtggtgaggtgtctcgcctgaggcttttgggggatcaagtgcactctacccgtattgcttttgttgaatttgttatggctgagagtgcaatttttgcgttggactgttgcgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0189M10-XfmMd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0189M10.2" temp_strand="-" temp_description="C07HBa0189M10.2  AC216425.2 htgs_phase:3 submitted_to_sgn_as:gi|167341761|gb|AC216425.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0189M10, complete sequence">
        <position start="33785" stop="31918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33481" g_stop="33409" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="85" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33408" i_stop="33322" i_length="87">
            <donor d_prob="0.052" d_score="1.00"/>
            <acceptor a_prob="0.670" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33321" g_stop="33209" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="198" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33208" i_stop="33069" i_length="140">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33068" g_stop="33009" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="258" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33008" i_stop="32841" i_length="168">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32840" g_stop="32793" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="306" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32792" i_stop="32710" i_length="83">
            <donor d_prob="0.634" d_score="1.00"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32709" g_stop="32641" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="375" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32640" i_stop="32254" i_length="387">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32253" g_stop="32218" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="411" r_length="36" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0189M10.2" gen_strand="-" ref_id="SGN-E371341" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0189M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33481" e_stop="33409"/>
          <exon e_start="33321" e_stop="33209"/>
          <exon e_start="33068" e_stop="33009"/>
          <exon e_start="32840" e_stop="32793"/>
          <exon e_start="32709" e_stop="32641"/>
          <exon e_start="32253" e_stop="32218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTTGACTGCAGAGTTTGTGGTGATCCCCACTCTCGCCTTCGCTTTGCCTTTGTGGAATTCGCCGATGAATGTAAGTTGGAGGGGATAGAAGTTTTTCTTAGTACTGCTGAACATTGAAAAGTGAAAACTAACTTGTCATGTGGAATCATTCTAACAGACTCAGCAAGAGGTTCACTTAGCCTTTGTGGAACAATATTAGGGTTCTCTCCTCTGAAGGTCCTACCATCAAAAACTGCTATTCTACCCGTGAATCCTACATTCCTTCCTAGGGTACGCAGAGATCTGTGCCGTTTTATTTACTTGTTTATGAATATGTGGAATAATTTTCTTGAGGTTCTATCTCATCTTATAGAAGTAAGGTCTTGGAACTAAATGCTTAGTTTTCCATTATGTGTACATGCTATGTGCAGTCTGAGGATGAGCGTGAGATGTGTGCCAGGACAGTCTACTGCACAAATATTGATAAGAAGGTATAAATCCCGCCTTTGAAATCTTCTGAAGTTCATTGCATGCTTTTTAGTACATCTTTCTTTGGGATTACCGCTGTCTGATCCATAGGTTATAATGATCTGGCTCAGGTCACTTTTTGTTTTCATAATCATCTGAAAGTTTAATGTATTGTATTCTATCCTGAACAGCTTTCTCAAGCTGATGTCAAGAATTTCTTTGAAACAAGATGTGGTGAGGTCAGTGTGATGTCTGAAACTTCTGACATATTAAGTTTAAAGAATGTTCGCCCAAGTGATGCTGAAGCTGCTCCTCTTTGCAGGTGTCTCGCCTGAGGCTTTTGGGGGATCAAGTGCACTCTACCCGTATTGCTTTTGTTGAATTTGTTATGGTACGTTGACTATCTTTTTCTTTTTCTTTGGATTTAAGTTGAGATATAGCATCAATAGGTACATTAAACACATCTATAGATTATAATGTCACTAGATGATGACTCTTCCTTATTTTAGTTTTTTGTGTCATGGAATTATCAGCACGATCTTCTTCTTTTTTGTAATTCTTCTGAATGTACTTCTCTTCCTCCCCTTGTTATTTTTGTGGCCGCAACCATCACTCTAGAGACGCCATTGAGCAGAGGAAGTTCCTATAAATTATCAGTGGTATATCTAAAGATGCTAGCCTGCAAAAAGCTGCAGCATGATATCAAATATTTCGTTTTGAAGATGATCTAAACAGGTGCTGGAATTATAATGTAAAAAGATACTTGATAAATGTGCAGGCTGAGAGTGCAATTTTGGCGTTGGACTGTTGCGGA</genome_strand>
        <mrna_strand>GTTGTTGACTGCAGAGTTTGTGGTGATCCCCACTCTCGCCTTCGCTTTGCCTTTGTGGAATTCGCCGATGAAT.......................................................................................ACTCAGCAAGAGGTTCACTTAGCCTTTGTGGAACAATATTAGGGTTCTCTCCTCTGAAGGTCCTACCATCAAAAACTGCTATTCTACCCGTGAATCCTACATTCCTTCCTAGG............................................................................................................................................TCTGAGGATGAGCGTGAGATGTGTGCCAGGACAGTCTACTGCACAAATATTGATAAGAAG........................................................................................................................................................................CTTTCTCAAGCTGATGTCAAGAATTTCTTTGAAACAAGATGTGGTGAG...................................................................................GTGTCTCGCCTGAGGCTTTTGGGGGATCAAGTGCACTCTACCCGTATTGCTTTTGTTGAATTTGTTATG...................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAGTGCAATTTTTGCGTTGGACTGTTGCGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0189M10-XfmMd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550947" ref_strand="+" ref_description="SGN-E550947 [TUS-54-H24]">
      <seq>gtgtcttgcaggattatttagcgcttatggacaagttgttgactgcacagtttgtggtgatccccactctcgacttcactttgcctttgtggaattcaccgatgaatactcagcaagaggttcacttatcctttgtggaacaatattagggttctctcctctgaaggtcctaccaacaaaaactgctattctacccgtgaatcctacattccttcctaggtctgaggatgagcgtgagatgtgtgccaggacagtctactgctcaaatattgatcagaagctttctcaagctgatgtcaagaatttctttgacacaagatgtggtgaggtgtctcgcctgaggcttttgggggatcaagtgcactctacccgtattgcttttgttgaatttgttatggctgagagtgcaattttggcgttggactgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0189M10-XfmMd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0189M10.2" temp_strand="-" temp_description="C07HBa0189M10.2  AC216425.2 htgs_phase:3 submitted_to_sgn_as:gi|167341761|gb|AC216425.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0189M10, complete sequence">
        <position start="36069" stop="31922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35769" g_stop="35736" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35735" i_stop="33482" i_length="2254">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33481" g_stop="33409" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="107" r_length="73" r_score="0.945"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33408" i_stop="33322" i_length="87">
            <donor d_prob="0.052" d_score="0.94"/>
            <acceptor a_prob="0.670" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33321" g_stop="33209" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="220" r_length="113" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33208" i_stop="33069" i_length="140">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33068" g_stop="33009" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="280" r_length="60" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33008" i_stop="32841" i_length="168">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32840" g_stop="32793" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="328" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32792" i_stop="32710" i_length="83">
            <donor d_prob="0.634" d_score="0.98"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32709" g_stop="32641" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="397" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="32640" i_stop="32254" i_length="387">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32253" g_stop="32222" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="429" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0189M10.2" gen_strand="-" ref_id="SGN-E550947" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0189M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35769" e_stop="35736"/>
          <exon e_start="33481" e_stop="33409"/>
          <exon e_start="33321" e_stop="33209"/>
          <exon e_start="33068" e_stop="33009"/>
          <exon e_start="32840" e_stop="32793"/>
          <exon e_start="32709" e_stop="32641"/>
          <exon e_start="32253" e_stop="32222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTCTTGCTGGATTATTTAGCGCTTATGGACAAGTAAGTGATGATTCTCTTCTGGACATTCTTGTGATTCATTATGTTAGATACTTGAGTGCTTTAAGTGCAGAGTGGCGCTTCTTTCAATTAATTGAGAAACCTAAAAACCATTAATGCGCTAAGTGTCATGCTGAAGCAGATGGGTGCCTATAGCTTGTGTTTTACTCCATAGTATATGTCTCAAGTCCTAGTTTGTTGCTCTATCTGCATTGCATAGGATGTTTGAATTCCATGTCCTGCAAATAAGCAATAACCTTTAGACTGTCTAATATTATGACTGAGCTATGATTAGCATTAATTGTCAGGTTGCTTAAGACATTAGTATCATTGAAATATCTTGATCATTGACATATGCTTCAAATTACTGATGACATGCAGCAAACATACCTTTTGCTATCTTTGGTAGAGGGGTGAGTGTTCTTTCTATCTCTTGGCTGTGGGTACTAGCATAATAACATTGTGCATACTATTCTGAAATATTGACCAGGCCGAGGTACTTATTTTCTTGTCAATCTCCATAAAGAGTCAAAAAGGGTATCTCAAAGTTAATGTTGCCTAGTCTCTGGTATTATGTAATTTATTTTCTGGTCATGCCAATTCAGTGTCAAAAAAGGTAGCTCAAAGTTGTTCTTCAAATTCCCCATCAGCTTGTTAGAGTTAAATAGTAGCTGCTTCGTAGAGTTGATTCTGTCAGTCTAATCTCCTGAGAAATTCTCGACAAGCATGGGAAAGAGGAAGCTGAAATGAGGAGGTACAAAACTAAAGCAGAAGCCTAAAGGTGAAGCTGGTAGATGCACAAGCAAACTATATATGTTGCTTGGACTATCCAAAAAGAAGTCCGGTGTGCGCAGGATCCTTAAAAAGTAATGCATTTTTGGAGGACTCGATACGCGTACAACAATATTTTTGGAGAGTCCGGTGCAACATAGCAAGAAAAACCTAATAACTTTAACACAACAAAAGATTGATTCATATTACACTTATTTTACCTTTACACGGATATAAGCTGCCTCCTTTCATATTCCTCTTAGGCTGATCCTGAACACCAAGGAGACTTCTATCATTTCACTCCTAGGACAAATCACAGGTGGGATTTGGATTTTCTTTAAAAACTGTACTTTGCTTGACTAAAGACATAAGTAGTTGCTTAACTAAAGACATAAGTAGACTATGAATATTTACTGTAAGGACTAAGGATGTAATCACTGCTACCTTAAAATTAATAAAATAGAGTATATCTGATAGCCAGTGAGAGCCAGTTACTAATTAAGAAGCATGTAAAGATGAACCTAAAGTATTTCTAAATTATATAAAGTACCATATCTTATTGTTCTTCCACTTACATCCTGCATCTCTGAGTGGAATTTAAATTTCTGTGTTTTTGTTTTGGCTTACAGTTTTTGGATATCTTTAACGTACGTCTTACATTTTTACTTAAATCAACATATTAGGAAGACTCTAAAGAAGGTTACAATATAAAGAAGCAATTAGATATTGAAATGTTGAACTACAACATCTAGCTCGAAAGAGCACTACTTCGCTTGTTATTTCTCTCTTCTTTCTTTCTTTTCTTACACTTTGGTGTCATAATAACGTGCTTTAACTGTCTTTTACGCACCAGCGATGTGCGCTGATGCTTATTCTGGTTAAAGACTGTTTGAATTAATATACATCAGTACTTTACTTTTGTCTCCTTACTTGCATCATCAATTGAAGAGCTTCTTTACACTTTGGTTATGGTTTATTTTACTGTTTAATATGTTTGGCTTATGATTATTGCCCTGCAAGACCATTATCCGTTTCATGGTTTGTCTTTCCAAAAATACAGATACGCCATACAATTATTTTTACTATTTATGGGACTGTCTAACAAAAAGTTTGGTTTGTATGAAACTTGGAAAGCTAGATTGAGTTGCTTGTTGTCAGTCTGTGAGGTGTTGGTGAGTCACGATGCTTGTGTTTCTGTTTGACATAGTTGGACTAGTTTCCTTTTAATTTGCTAAGTTTCATGCCATTTTGACACAATTGAATTGTTCTTTATCCTCATTTCTTTCTCAAACTCGACTGACGTTAATTCATATTTGTGTTTTTGGTGAAAATTCCTGTGTAATTACACTGGGTGTGTTGTTGTTGCTTAGGTGAAAATTGTATGGGGTATCTATTGAGGAGTGTAATAGTGGTCTTTCTATAATAATAATAATAAAAAAAGAGTGTAATGTTGGTGTGTTTTCTTTTGTCTACGTTTGCTCCATAGGTTGTTGACTGCAGAGTTTGTGGTGATCCCCACTCTCGCCTTCGCTTTGCCTTTGTGGAATTCGCCGATGAATGTAAGTTGGAGGGGATAGAAGTTTTTCTTAGTACTGCTGAACATTGAAAAGTGAAAACTAACTTGTCATGTGGAATCATTCTAACAGACTCAGCAAGAGGTTCACTTAGCCTTTGTGGAACAATATTAGGGTTCTCTCCTCTGAAGGTCCTACCATCAAAAACTGCTATTCTACCCGTGAATCCTACATTCCTTCCTAGGGTACGCAGAGATCTGTGCCGTTTTATTTACTTGTTTATGAATATGTGGAATAATTTTCTTGAGGTTCTATCTCATCTTATAGAAGTAAGGTCTTGGAACTAAATGCTTAGTTTTCCATTATGTGTACATGCTATGTGCAGTCTGAGGATGAGCGTGAGATGTGTGCCAGGACAGTCTACTGCACAAATATTGATAAGAAGGTATAAATCCCGCCTTTGAAATCTTCTGAAGTTCATTGCATGCTTTTTAGTACATCTTTCTTTGGGATTACCGCTGTCTGATCCATAGGTTATAATGATCTGGCTCAGGTCACTTTTTGTTTTCATAATCATCTGAAAGTTTAATGTATTGTATTCTATCCTGAACAGCTTTCTCAAGCTGATGTCAAGAATTTCTTTGAAACAAGATGTGGTGAGGTCAGTGTGATGTCTGAAACTTCTGACATATTAAGTTTAAAGAATGTTCGCCCAAGTGATGCTGAAGCTGCTCCTCTTTGCAGGTGTCTCGCCTGAGGCTTTTGGGGGATCAAGTGCACTCTACCCGTATTGCTTTTGTTGAATTTGTTATGGTACGTTGACTATCTTTTTCTTTTTCTTTGGATTTAAGTTGAGATATAGCATCAATAGGTACATTAAACACATCTATAGATTATAATGTCACTAGATGATGACTCTTCCTTATTTTAGTTTTTTGTGTCATGGAATTATCAGCACGATCTTCTTCTTTTTTGTAATTCTTCTGAATGTACTTCTCTTCCTCCCCTTGTTATTTTTGTGGCCGCAACCATCACTCTAGAGACGCCATTGAGCAGAGGAAGTTCCTATAAATTATCAGTGGTATATCTAAAGATGCTAGCCTGCAAAAAGCTGCAGCATGATATCAAATATTTCGTTTTGAAGATGATCTAAACAGGTGCTGGAATTATAATGTAAAAAGATACTTGATAAATGTGCAGGCTGAGAGTGCAATTTTGGCGTTGGACTGTTG</genome_strand>
        <mrna_strand>GTGTCTTGCAGGATTATTTAGCGCTTATGGACAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGACTGCACAGTTTGTGGTGATCCCCACTCTCGACTTCACTTTGCCTTTGTGGAATTCACCGATGAAT.......................................................................................ACTCAGCAAGAGGTTCACTTATCCTTTGTGGAACAATATTAGGGTTCTCTCCTCTGAAGGTCCTACCAACAAAAACTGCTATTCTACCCGTGAATCCTACATTCCTTCCTAGG............................................................................................................................................TCTGAGGATGAGCGTGAGATGTGTGCCAGGACAGTCTACTGCTCAAATATTGATCAGAAG........................................................................................................................................................................CTTTCTCAAGCTGATGTCAAGAATTTCTTTGACACAAGATGTGGTGAG...................................................................................GTGTCTCGCCTGAGGCTTTTGGGGGATCAAGTGCACTCTACCCGTATTGCTTTTGTTGAATTTGTTATG...................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAGTGCAATTTTGGCGTTGGACTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0189M10-XfmMd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E688705" ref_strand="+" ref_description="SGN-E688705 [t3_tus_54_H24]">
      <seq>gtgtcttgcaggattatttagcgcttatggacaagttgttgactgcacagtttgtggtgatccccactctcgacttcactttgcctttgtggaattccccgatgaatactcagcaagaggttcacttatcctttgtggaacaatattagggttctctcctctgaaggtcctaccaacaaaaactgctattctacccgtgaatcctacattccttcctaggtctgaggatgagcgtgagatgtgtgccaggacagtctactgctcaaatattgatcagaagctttctctagctgatgtcaagaatttctttgacacaagatgtggtgaggtgtctcgcctgaggcttttgggggatcaagtgcactctacccgtattgcttttgttgaatttgttatggctgagagtgcaattttggcgttggactgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0189M10-XfmMd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0189M10.2" temp_strand="-" temp_description="C07HBa0189M10.2  AC216425.2 htgs_phase:3 submitted_to_sgn_as:gi|167341761|gb|AC216425.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0189M10, complete sequence">
        <position start="36069" stop="31922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35769" g_stop="35736" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35735" i_stop="33482" i_length="2254">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33481" g_stop="33409" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="107" r_length="73" r_score="0.945"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33408" i_stop="33322" i_length="87">
            <donor d_prob="0.052" d_score="0.94"/>
            <acceptor a_prob="0.670" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33321" g_stop="33209" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="220" r_length="113" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33208" i_stop="33069" i_length="140">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33068" g_stop="33009" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="280" r_length="60" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33008" i_stop="32841" i_length="168">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32840" g_stop="32793" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="328" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32792" i_stop="32710" i_length="83">
            <donor d_prob="0.634" d_score="0.96"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32709" g_stop="32641" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="397" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="32640" i_stop="32254" i_length="387">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32253" g_stop="32222" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="429" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0189M10.2" gen_strand="-" ref_id="SGN-E688705" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0189M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35769" e_stop="35736"/>
          <exon e_start="33481" e_stop="33409"/>
          <exon e_start="33321" e_stop="33209"/>
          <exon e_start="33068" e_stop="33009"/>
          <exon e_start="32840" e_stop="32793"/>
          <exon e_start="32709" e_stop="32641"/>
          <exon e_start="32253" e_stop="32222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTCTTGCTGGATTATTTAGCGCTTATGGACAAGTAAGTGATGATTCTCTTCTGGACATTCTTGTGATTCATTATGTTAGATACTTGAGTGCTTTAAGTGCAGAGTGGCGCTTCTTTCAATTAATTGAGAAACCTAAAAACCATTAATGCGCTAAGTGTCATGCTGAAGCAGATGGGTGCCTATAGCTTGTGTTTTACTCCATAGTATATGTCTCAAGTCCTAGTTTGTTGCTCTATCTGCATTGCATAGGATGTTTGAATTCCATGTCCTGCAAATAAGCAATAACCTTTAGACTGTCTAATATTATGACTGAGCTATGATTAGCATTAATTGTCAGGTTGCTTAAGACATTAGTATCATTGAAATATCTTGATCATTGACATATGCTTCAAATTACTGATGACATGCAGCAAACATACCTTTTGCTATCTTTGGTAGAGGGGTGAGTGTTCTTTCTATCTCTTGGCTGTGGGTACTAGCATAATAACATTGTGCATACTATTCTGAAATATTGACCAGGCCGAGGTACTTATTTTCTTGTCAATCTCCATAAAGAGTCAAAAAGGGTATCTCAAAGTTAATGTTGCCTAGTCTCTGGTATTATGTAATTTATTTTCTGGTCATGCCAATTCAGTGTCAAAAAAGGTAGCTCAAAGTTGTTCTTCAAATTCCCCATCAGCTTGTTAGAGTTAAATAGTAGCTGCTTCGTAGAGTTGATTCTGTCAGTCTAATCTCCTGAGAAATTCTCGACAAGCATGGGAAAGAGGAAGCTGAAATGAGGAGGTACAAAACTAAAGCAGAAGCCTAAAGGTGAAGCTGGTAGATGCACAAGCAAACTATATATGTTGCTTGGACTATCCAAAAAGAAGTCCGGTGTGCGCAGGATCCTTAAAAAGTAATGCATTTTTGGAGGACTCGATACGCGTACAACAATATTTTTGGAGAGTCCGGTGCAACATAGCAAGAAAAACCTAATAACTTTAACACAACAAAAGATTGATTCATATTACACTTATTTTACCTTTACACGGATATAAGCTGCCTCCTTTCATATTCCTCTTAGGCTGATCCTGAACACCAAGGAGACTTCTATCATTTCACTCCTAGGACAAATCACAGGTGGGATTTGGATTTTCTTTAAAAACTGTACTTTGCTTGACTAAAGACATAAGTAGTTGCTTAACTAAAGACATAAGTAGACTATGAATATTTACTGTAAGGACTAAGGATGTAATCACTGCTACCTTAAAATTAATAAAATAGAGTATATCTGATAGCCAGTGAGAGCCAGTTACTAATTAAGAAGCATGTAAAGATGAACCTAAAGTATTTCTAAATTATATAAAGTACCATATCTTATTGTTCTTCCACTTACATCCTGCATCTCTGAGTGGAATTTAAATTTCTGTGTTTTTGTTTTGGCTTACAGTTTTTGGATATCTTTAACGTACGTCTTACATTTTTACTTAAATCAACATATTAGGAAGACTCTAAAGAAGGTTACAATATAAAGAAGCAATTAGATATTGAAATGTTGAACTACAACATCTAGCTCGAAAGAGCACTACTTCGCTTGTTATTTCTCTCTTCTTTCTTTCTTTTCTTACACTTTGGTGTCATAATAACGTGCTTTAACTGTCTTTTACGCACCAGCGATGTGCGCTGATGCTTATTCTGGTTAAAGACTGTTTGAATTAATATACATCAGTACTTTACTTTTGTCTCCTTACTTGCATCATCAATTGAAGAGCTTCTTTACACTTTGGTTATGGTTTATTTTACTGTTTAATATGTTTGGCTTATGATTATTGCCCTGCAAGACCATTATCCGTTTCATGGTTTGTCTTTCCAAAAATACAGATACGCCATACAATTATTTTTACTATTTATGGGACTGTCTAACAAAAAGTTTGGTTTGTATGAAACTTGGAAAGCTAGATTGAGTTGCTTGTTGTCAGTCTGTGAGGTGTTGGTGAGTCACGATGCTTGTGTTTCTGTTTGACATAGTTGGACTAGTTTCCTTTTAATTTGCTAAGTTTCATGCCATTTTGACACAATTGAATTGTTCTTTATCCTCATTTCTTTCTCAAACTCGACTGACGTTAATTCATATTTGTGTTTTTGGTGAAAATTCCTGTGTAATTACACTGGGTGTGTTGTTGTTGCTTAGGTGAAAATTGTATGGGGTATCTATTGAGGAGTGTAATAGTGGTCTTTCTATAATAATAATAATAAAAAAAGAGTGTAATGTTGGTGTGTTTTCTTTTGTCTACGTTTGCTCCATAGGTTGTTGACTGCAGAGTTTGTGGTGATCCCCACTCTCGCCTTCGCTTTGCCTTTGTGGAATTCGCCGATGAATGTAAGTTGGAGGGGATAGAAGTTTTTCTTAGTACTGCTGAACATTGAAAAGTGAAAACTAACTTGTCATGTGGAATCATTCTAACAGACTCAGCAAGAGGTTCACTTAGCCTTTGTGGAACAATATTAGGGTTCTCTCCTCTGAAGGTCCTACCATCAAAAACTGCTATTCTACCCGTGAATCCTACATTCCTTCCTAGGGTACGCAGAGATCTGTGCCGTTTTATTTACTTGTTTATGAATATGTGGAATAATTTTCTTGAGGTTCTATCTCATCTTATAGAAGTAAGGTCTTGGAACTAAATGCTTAGTTTTCCATTATGTGTACATGCTATGTGCAGTCTGAGGATGAGCGTGAGATGTGTGCCAGGACAGTCTACTGCACAAATATTGATAAGAAGGTATAAATCCCGCCTTTGAAATCTTCTGAAGTTCATTGCATGCTTTTTAGTACATCTTTCTTTGGGATTACCGCTGTCTGATCCATAGGTTATAATGATCTGGCTCAGGTCACTTTTTGTTTTCATAATCATCTGAAAGTTTAATGTATTGTATTCTATCCTGAACAGCTTTCTCAAGCTGATGTCAAGAATTTCTTTGAAACAAGATGTGGTGAGGTCAGTGTGATGTCTGAAACTTCTGACATATTAAGTTTAAAGAATGTTCGCCCAAGTGATGCTGAAGCTGCTCCTCTTTGCAGGTGTCTCGCCTGAGGCTTTTGGGGGATCAAGTGCACTCTACCCGTATTGCTTTTGTTGAATTTGTTATGGTACGTTGACTATCTTTTTCTTTTTCTTTGGATTTAAGTTGAGATATAGCATCAATAGGTACATTAAACACATCTATAGATTATAATGTCACTAGATGATGACTCTTCCTTATTTTAGTTTTTTGTGTCATGGAATTATCAGCACGATCTTCTTCTTTTTTGTAATTCTTCTGAATGTACTTCTCTTCCTCCCCTTGTTATTTTTGTGGCCGCAACCATCACTCTAGAGACGCCATTGAGCAGAGGAAGTTCCTATAAATTATCAGTGGTATATCTAAAGATGCTAGCCTGCAAAAAGCTGCAGCATGATATCAAATATTTCGTTTTGAAGATGATCTAAACAGGTGCTGGAATTATAATGTAAAAAGATACTTGATAAATGTGCAGGCTGAGAGTGCAATTTTGGCGTTGGACTGTTG</genome_strand>
        <mrna_strand>GTGTCTTGCAGGATTATTTAGCGCTTATGGACAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGACTGCACAGTTTGTGGTGATCCCCACTCTCGACTTCACTTTGCCTTTGTGGAATTCCCCGATGAAT.......................................................................................ACTCAGCAAGAGGTTCACTTATCCTTTGTGGAACAATATTAGGGTTCTCTCCTCTGAAGGTCCTACCAACAAAAACTGCTATTCTACCCGTGAATCCTACATTCCTTCCTAGG............................................................................................................................................TCTGAGGATGAGCGTGAGATGTGTGCCAGGACAGTCTACTGCTCAAATATTGATCAGAAG........................................................................................................................................................................CTTTCTCTAGCTGATGTCAAGAATTTCTTTGACACAAGATGTGGTGAG...................................................................................GTGTCTCGCCTGAGGCTTTTGGGGGATCAAGTGCACTCTACCCGTATTGCTTTTGTTGAATTTGTTATG...................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAGTGCAATTTTGGCGTTGGACTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0189M10-XfmMd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701893" ref_strand="+" ref_description="SGN-E701893 [FA17AH12]">
      <seq>cacaagtatgtggcgagacagcagtgattgaggctccggctgttcaatcactgttgtcaaacactgatgataataaattttctgatgtgggttcggaagaatctgagtgtaattctgagaaaaatgtgaattctgaatctgtagataatggggggaaggattgttcggatgttaaatctgattataaaatgcaagatattgttgacatgttgaagaaactcaagttgaatccactggcgaaggagtttgttccttcttattttaatcgcgatcagatgcttctgaacaattttgtgcagaattttgtgcctgttattaagactgtgggagagggaggtgatgcttttcagaacaatggaaagagaggtaacaaccataaccagggcagaaggagaatgaacaatagagcttttaaggctcaaagagaagatagcattaggaggacagtatatgtttctgacatcgatcacaatataacagaagagcgtcttgctggattatttagcgcttatggacaagttgttgactgcagagtttgtggtgatccccactctcgccttcgctttgcctttgtggaattcgccgatgaatactcagcaagaggttcacttagcctttgtggaacaatattagggttctctcctctgaaggtcctaccatcaaaaactgctattctacccgtgaatcctacattccttcctaggtctgaggatgagcgtgagatgtgtgccaggacagtctactgcacaaatattgataagaagctttctcaagctgatgtcaagaatttctttgaaacaagatgtggtgaggtgtctcgcctgangcttttgggggatcaagtgcactctacccgtattgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0189M10-XfmMd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0189M10.2" temp_strand="-" temp_description="C07HBa0189M10.2  AC216425.2 htgs_phase:3 submitted_to_sgn_as:gi|167341761|gb|AC216425.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0189M10, complete sequence">
        <position start="38073" stop="32357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37773" g_stop="37412" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37411" i_stop="35982" i_length="1430">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35981" g_stop="35871" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="473" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35870" i_stop="35781" i_length="90">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35780" g_stop="35736" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="518" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35735" i_stop="33482" i_length="2254">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33481" g_stop="33409" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="591" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33408" i_stop="33322" i_length="87">
            <donor d_prob="0.052" d_score="1.00"/>
            <acceptor a_prob="0.670" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33321" g_stop="33209" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="704" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33208" i_stop="33069" i_length="140">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33068" g_stop="33009" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="705" r_stop="764" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33008" i_stop="32841" i_length="168">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32840" g_stop="32793" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="765" r_stop="812" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="32792" i_stop="32710" i_length="83">
            <donor d_prob="0.634" d_score="1.00"/>
            <acceptor a_prob="0.783" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="32709" g_stop="32657" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="813" r_stop="865" r_length="53" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0189M10.2" gen_strand="-" ref_id="SGN-E701893" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>865</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0189M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37773" e_stop="37412"/>
          <exon e_start="35981" e_stop="35871"/>
          <exon e_start="35780" e_stop="35736"/>
          <exon e_start="33481" e_stop="33409"/>
          <exon e_start="33321" e_stop="33209"/>
          <exon e_start="33068" e_stop="33009"/>
          <exon e_start="32840" e_stop="32793"/>
          <exon e_start="32709" e_stop="32657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAGTATGTGGCGAGACAGCAGTGATTGAGGCTCCGGCTGTTCAATCACTGTTGTCAAACACTGATGATAATAAATTTTCTGATGTGGGTTCGGAAGAATCTGAGTGTAATTCTGAGAAAAATGTGAATTCTGAATCTGTAGATAATGGGGGGAAGGATTGTTCGGATGTTAAATCTGATTATAAAATGCAAGATATTGTTGACATGTTGAAGAAACTCAAGTTGAATCCACTGGCGAAGGAGTTTGTTCCTTCTTATTTTAATCGCGATCAGATGCTTCTGAACAATTTTGTGCAGAATTTTGTGCCTGTTATTAAGACTGTGGGAGAGGGAGGTGATGCTTTTCAGAACAATGGAAAGGTATTGTTTCTGTTGTTCTGATTTAGTTAACTTGACTGAACAGTTGTTTTGGATTTTGATATGGTGTTTATTGTATTTGGTTGATTGTTTCATGACTTAGGCAATTATTAGTTCTTTGATTTCACTTGATAAAATCGAAATTCTGATATATTCGAAGTGTTTTTCCAGATAGCAGTTTCGCTGTGTAGGCTGCATAGACCTCTGTGGTCCGGCCTTCTTTGGATTTGTGTATAGCGGGAACTTAGTGCACCCGGCTGCCCCTTTTTACTCATTTTTATTTTCCTTTAGTTTTAAGGTTTTTTATGAGGTGGTATGTGCATCCATTAATTAGTTGTATACTTGTTTCAATTATGGGAAATGTAGCTGCTCGTAATGATTTTGGTTGAAAGTCTCATCATTTTTTCTAGGTAAAAAATGGTTTATTTGGAGATTTCAAATGTTGGGAATGTATGTGGAAGCATCATTAATCCTGCTTGATATTTGGTAATCAGTCTGTCAAATAAGTTGTTGTGAAAAGTTTCATGCTTTGGGCTGTTGATCATTTATCAAGGGTACTTTGAATGAATGAGTGGCTGGATTTCAAAGTTAAGAGGGACTTTTGCATTCTGAAGCTTTCTTGTTAAAATTGATTCTTTACTCTTCCTTGAGTTATTAATTGTTGGCATTTTGTTAGTCAATGGAATTTTGACATTGAGTCAGTTATTGGTATTGGTGACTTTTGTTTAATAAGAAATTGTTATGGATGCTTAGCTGGTAAAAATGAAAAAATTGTTTTTTTGATTGTTGTGAACGAGATGGAATTTGTCGTTTTGATCCAAATGTCCACTTGTGAGTGCTACATTTTCATTAAATTTGGTGATTTGAGCAGTTCTCAGATCAAACTTTTTTCTGTATGGTGCACCAGATATTAGGGAATATATTTGTCATTTTTCGTATAAATTGAATTAAAAGTTCTGGTCCGGAGCGGGGACTTGTTGATGTTTTAAGCATCCTTCCGTTGCACCTCTGCAAAGCGGCTGTAGAAGCTGATTTCACGCTTCGCATCTGTGATGCACAATTTACCAAAGGAACAATTCTACCTTAGCTTCAATTCTTGTCCTCTTTTAAATTTTTGTCTGGTCCTGTTGTTTAGTTTCTTTTATAAACAGAAAAGTTCAAGCTTCCATACTTTTTCTTTTTGATAAAGGTAAAAGTTGGATTCAACAGCATAAAGGACATGCTGTTCTATTCATTCTTCTTTTCACCAAAAATAAAAGGTTGTCAACCTTCCATACTTATCAATTCGAGGATTGTGTTTCAGATCATAATTACCACAATTTACTAAATACCCTCGTGGATTGGGCAATGCATTTCACCATTTTGGAAGTGATTTTTACTGCTCAATTCAGCAAGCTGACTCCTCCCTAATTTTATCACTAATGTGTCTGCAGAGAGGTAACAACCATAACCAGGGCAGAAGGAGAATGAACAATAGAGCTTTTAAGGCTCAAAGAGAAGATAGCATTAGGAGGACAGTATATGTTTCTGACATCGATCACAATGTAAGTGAGGATGGATGCCCCTTTATATTTAATTTATGTTCTGAAATTTGTATTTAAAAAGTTCCTCTTTTTGACTTTGCATCACCACAGATAACAGAAGAGCGTCTTGCTGGATTATTTAGCGCTTATGGACAAGTAAGTGATGATTCTCTTCTGGACATTCTTGTGATTCATTATGTTAGATACTTGAGTGCTTTAAGTGCAGAGTGGCGCTTCTTTCAATTAATTGAGAAACCTAAAAACCATTAATGCGCTAAGTGTCATGCTGAAGCAGATGGGTGCCTATAGCTTGTGTTTTACTCCATAGTATATGTCTCAAGTCCTAGTTTGTTGCTCTATCTGCATTGCATAGGATGTTTGAATTCCATGTCCTGCAAATAAGCAATAACCTTTAGACTGTCTAATATTATGACTGAGCTATGATTAGCATTAATTGTCAGGTTGCTTAAGACATTAGTATCATTGAAATATCTTGATCATTGACATATGCTTCAAATTACTGATGACATGCAGCAAACATACCTTTTGCTATCTTTGGTAGAGGGGTGAGTGTTCTTTCTATCTCTTGGCTGTGGGTACTAGCATAATAACATTGTGCATACTATTCTGAAATATTGACCAGGCCGAGGTACTTATTTTCTTGTCAATCTCCATAAAGAGTCAAAAAGGGTATCTCAAAGTTAATGTTGCCTAGTCTCTGGTATTATGTAATTTATTTTCTGGTCATGCCAATTCAGTGTCAAAAAAGGTAGCTCAAAGTTGTTCTTCAAATTCCCCATCAGCTTGTTAGAGTTAAATAGTAGCTGCTTCGTAGAGTTGATTCTGTCAGTCTAATCTCCTGAGAAATTCTCGACAAGCATGGGAAAGAGGAAGCTGAAATGAGGAGGTACAAAACTAAAGCAGAAGCCTAAAGGTGAAGCTGGTAGATGCACAAGCAAACTATATATGTTGCTTGGACTATCCAAAAAGAAGTCCGGTGTGCGCAGGATCCTTAAAAAGTAATGCATTTTTGGAGGACTCGATACGCGTACAACAATATTTTTGGAGAGTCCGGTGCAACATAGCAAGAAAAACCTAATAACTTTAACACAACAAAAGATTGATTCATATTACACTTATTTTACCTTTACACGGATATAAGCTGCCTCCTTTCATATTCCTCTTAGGCTGATCCTGAACACCAAGGAGACTTCTATCATTTCACTCCTAGGACAAATCACAGGTGGGATTTGGATTTTCTTTAAAAACTGTACTTTGCTTGACTAAAGACATAAGTAGTTGCTTAACTAAAGACATAAGTAGACTATGAATATTTACTGTAAGGACTAAGGATGTAATCACTGCTACCTTAAAATTAATAAAATAGAGTATATCTGATAGCCAGTGAGAGCCAGTTACTAATTAAGAAGCATGTAAAGATGAACCTAAAGTATTTCTAAATTATATAAAGTACCATATCTTATTGTTCTTCCACTTACATCCTGCATCTCTGAGTGGAATTTAAATTTCTGTGTTTTTGTTTTGGCTTACAGTTTTTGGATATCTTTAACGTACGTCTTACATTTTTACTTAAATCAACATATTAGGAAGACTCTAAAGAAGGTTACAATATAAAGAAGCAATTAGATATTGAAATGTTGAACTACAACATCTAGCTCGAAAGAGCACTACTTCGCTTGTTATTTCTCTCTTCTTTCTTTCTTTTCTTACACTTTGGTGTCATAATAACGTGCTTTAACTGTCTTTTACGCACCAGCGATGTGCGCTGATGCTTATTCTGGTTAAAGACTGTTTGAATTAATATACATCAGTACTTTACTTTTGTCTCCTTACTTGCATCATCAATTGAAGAGCTTCTTTACACTTTGGTTATGGTTTATTTTACTGTTTAATATGTTTGGCTTATGATTATTGCCCTGCAAGACCATTATCCGTTTCATGGTTTGTCTTTCCAAAAATACAGATACGCCATACAATTATTTTTACTATTTATGGGACTGTCTAACAAAAAGTTTGGTTTGTATGAAACTTGGAAAGCTAGATTGAGTTGCTTGTTGTCAGTCTGTGAGGTGTTGGTGAGTCACGATGCTTGTGTTTCTGTTTGACATAGTTGGACTAGTTTCCTTTTAATTTGCTAAGTTTCATGCCATTTTGACACAATTGAATTGTTCTTTATCCTCATTTCTTTCTCAAACTCGACTGACGTTAATTCATATTTGTGTTTTTGGTGAAAATTCCTGTGTAATTACACTGGGTGTGTTGTTGTTGCTTAGGTGAAAATTGTATGGGGTATCTATTGAGGAGTGTAATAGTGGTCTTTCTATAATAATAATAATAAAAAAAGAGTGTAATGTTGGTGTGTTTTCTTTTGTCTACGTTTGCTCCATAGGTTGTTGACTGCAGAGTTTGTGGTGATCCCCACTCTCGCCTTCGCTTTGCCTTTGTGGAATTCGCCGATGAATGTAAGTTGGAGGGGATAGAAGTTTTTCTTAGTACTGCTGAACATTGAAAAGTGAAAACTAACTTGTCATGTGGAATCATTCTAACAGACTCAGCAAGAGGTTCACTTAGCCTTTGTGGAACAATATTAGGGTTCTCTCCTCTGAAGGTCCTACCATCAAAAACTGCTATTCTACCCGTGAATCCTACATTCCTTCCTAGGGTACGCAGAGATCTGTGCCGTTTTATTTACTTGTTTATGAATATGTGGAATAATTTTCTTGAGGTTCTATCTCATCTTATAGAAGTAAGGTCTTGGAACTAAATGCTTAGTTTTCCATTATGTGTACATGCTATGTGCAGTCTGAGGATGAGCGTGAGATGTGTGCCAGGACAGTCTACTGCACAAATATTGATAAGAAGGTATAAATCCCGCCTTTGAAATCTTCTGAAGTTCATTGCATGCTTTTTAGTACATCTTTCTTTGGGATTACCGCTGTCTGATCCATAGGTTATAATGATCTGGCTCAGGTCACTTTTTGTTTTCATAATCATCTGAAAGTTTAATGTATTGTATTCTATCCTGAACAGCTTTCTCAAGCTGATGTCAAGAATTTCTTTGAAACAAGATGTGGTGAGGTCAGTGTGATGTCTGAAACTTCTGACATATTAAGTTTAAAGAATGTTCGCCCAAGTGATGCTGAAGCTGCTCCTCTTTGCAGGTGTCTCGCCTGAGGCTTTTGGGGGATCAAGTGCACTCTACCCGTATTGCTTT</genome_strand>
        <mrna_strand>CACAAGTATGTGGCGAGACAGCAGTGATTGAGGCTCCGGCTGTTCAATCACTGTTGTCAAACACTGATGATAATAAATTTTCTGATGTGGGTTCGGAAGAATCTGAGTGTAATTCTGAGAAAAATGTGAATTCTGAATCTGTAGATAATGGGGGGAAGGATTGTTCGGATGTTAAATCTGATTATAAAATGCAAGATATTGTTGACATGTTGAAGAAACTCAAGTTGAATCCACTGGCGAAGGAGTTTGTTCCTTCTTATTTTAATCGCGATCAGATGCTTCTGAACAATTTTGTGCAGAATTTTGTGCCTGTTATTAAGACTGTGGGAGAGGGAGGTGATGCTTTTCAGAACAATGGAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGTAACAACCATAACCAGGGCAGAAGGAGAATGAACAATAGAGCTTTTAAGGCTCAAAGAGAAGATAGCATTAGGAGGACAGTATATGTTTCTGACATCGATCACAAT..........................................................................................ATAACAGAAGAGCGTCTTGCTGGATTATTTAGCGCTTATGGACAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGACTGCAGAGTTTGTGGTGATCCCCACTCTCGCCTTCGCTTTGCCTTTGTGGAATTCGCCGATGAAT.......................................................................................ACTCAGCAAGAGGTTCACTTAGCCTTTGTGGAACAATATTAGGGTTCTCTCCTCTGAAGGTCCTACCATCAAAAACTGCTATTCTACCCGTGAATCCTACATTCCTTCCTAGG............................................................................................................................................TCTGAGGATGAGCGTGAGATGTGTGCCAGGACAGTCTACTGCACAAATATTGATAAGAAG........................................................................................................................................................................CTTTCTCAAGCTGATGTCAAGAATTTCTTTGAAACAAGATGTGGTGAG...................................................................................GTGTCTCGCCTGANGCTTTTGGGGGATCAAGTGCACTCTACCCGTATTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0189M10-XfmMd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258039" ref_strand="+" ref_description="SGN-E258039 [cLEG-48-G11]">
      <seq>tatgtggcgagacagcagtgattgaggctccggctgttcaatcactgttgtcaaacactgatgataataaattttctgatgtgggttcggaagaatctgagtgtaattctgagaaaaatgtgaattctgaatctgtagataatggggggaaggattgttcggatgttaaatctgattataaaatgcaagatattgttgacatgttgaagaaactcaagttgaatccactggcgaaggagtttgttccttcttattttaatcgcgatcagatgcttctgaacaattttgtgcagaattttgtgcctgttattaagactgtgggagagggaggtgatgcttttcagaacaatggaaagagaggtaacaaccataaccagggcagaaggagaatgaacaatagagcttttaaggctcaaagagaagatagcattaggaggacagtatatgtttctgacatcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0189M10-XfmMd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0189M10.2" temp_strand="-" temp_description="C07HBa0189M10.2  AC216425.2 htgs_phase:3 submitted_to_sgn_as:gi|167341761|gb|AC216425.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0189M10, complete sequence">
        <position start="38067" stop="35577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37767" g_stop="37412" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37411" i_stop="35982" i_length="1430">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35981" g_stop="35877" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="461" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0189M10.2" gen_strand="-" ref_id="SGN-E258039" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0189M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37767" e_stop="37412"/>
          <exon e_start="35981" e_stop="35877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGTGGCGAGACAGCAGTGATTGAGGCTCCGGCTGTTCAATCACTGTTGTCAAACACTGATGATAATAAATTTTCTGATGTGGGTTCGGAAGAATCTGAGTGTAATTCTGAGAAAAATGTGAATTCTGAATCTGTAGATAATGGGGGGAAGGATTGTTCGGATGTTAAATCTGATTATAAAATGCAAGATATTGTTGACATGTTGAAGAAACTCAAGTTGAATCCACTGGCGAAGGAGTTTGTTCCTTCTTATTTTAATCGCGATCAGATGCTTCTGAACAATTTTGTGCAGAATTTTGTGCCTGTTATTAAGACTGTGGGAGAGGGAGGTGATGCTTTTCAGAACAATGGAAAGGTATTGTTTCTGTTGTTCTGATTTAGTTAACTTGACTGAACAGTTGTTTTGGATTTTGATATGGTGTTTATTGTATTTGGTTGATTGTTTCATGACTTAGGCAATTATTAGTTCTTTGATTTCACTTGATAAAATCGAAATTCTGATATATTCGAAGTGTTTTTCCAGATAGCAGTTTCGCTGTGTAGGCTGCATAGACCTCTGTGGTCCGGCCTTCTTTGGATTTGTGTATAGCGGGAACTTAGTGCACCCGGCTGCCCCTTTTTACTCATTTTTATTTTCCTTTAGTTTTAAGGTTTTTTATGAGGTGGTATGTGCATCCATTAATTAGTTGTATACTTGTTTCAATTATGGGAAATGTAGCTGCTCGTAATGATTTTGGTTGAAAGTCTCATCATTTTTTCTAGGTAAAAAATGGTTTATTTGGAGATTTCAAATGTTGGGAATGTATGTGGAAGCATCATTAATCCTGCTTGATATTTGGTAATCAGTCTGTCAAATAAGTTGTTGTGAAAAGTTTCATGCTTTGGGCTGTTGATCATTTATCAAGGGTACTTTGAATGAATGAGTGGCTGGATTTCAAAGTTAAGAGGGACTTTTGCATTCTGAAGCTTTCTTGTTAAAATTGATTCTTTACTCTTCCTTGAGTTATTAATTGTTGGCATTTTGTTAGTCAATGGAATTTTGACATTGAGTCAGTTATTGGTATTGGTGACTTTTGTTTAATAAGAAATTGTTATGGATGCTTAGCTGGTAAAAATGAAAAAATTGTTTTTTTGATTGTTGTGAACGAGATGGAATTTGTCGTTTTGATCCAAATGTCCACTTGTGAGTGCTACATTTTCATTAAATTTGGTGATTTGAGCAGTTCTCAGATCAAACTTTTTTCTGTATGGTGCACCAGATATTAGGGAATATATTTGTCATTTTTCGTATAAATTGAATTAAAAGTTCTGGTCCGGAGCGGGGACTTGTTGATGTTTTAAGCATCCTTCCGTTGCACCTCTGCAAAGCGGCTGTAGAAGCTGATTTCACGCTTCGCATCTGTGATGCACAATTTACCAAAGGAACAATTCTACCTTAGCTTCAATTCTTGTCCTCTTTTAAATTTTTGTCTGGTCCTGTTGTTTAGTTTCTTTTATAAACAGAAAAGTTCAAGCTTCCATACTTTTTCTTTTTGATAAAGGTAAAAGTTGGATTCAACAGCATAAAGGACATGCTGTTCTATTCATTCTTCTTTTCACCAAAAATAAAAGGTTGTCAACCTTCCATACTTATCAATTCGAGGATTGTGTTTCAGATCATAATTACCACAATTTACTAAATACCCTCGTGGATTGGGCAATGCATTTCACCATTTTGGAAGTGATTTTTACTGCTCAATTCAGCAAGCTGACTCCTCCCTAATTTTATCACTAATGTGTCTGCAGAGAGGTAACAACCATAACCAGGGCAGAAGGAGAATGAACAATAGAGCTTTTAAGGCTCAAAGAGAAGATAGCATTAGGAGGACAGTATATGTTTCTGACATCGAT</genome_strand>
        <mrna_strand>TATGTGGCGAGACAGCAGTGATTGAGGCTCCGGCTGTTCAATCACTGTTGTCAAACACTGATGATAATAAATTTTCTGATGTGGGTTCGGAAGAATCTGAGTGTAATTCTGAGAAAAATGTGAATTCTGAATCTGTAGATAATGGGGGGAAGGATTGTTCGGATGTTAAATCTGATTATAAAATGCAAGATATTGTTGACATGTTGAAGAAACTCAAGTTGAATCCACTGGCGAAGGAGTTTGTTCCTTCTTATTTTAATCGCGATCAGATGCTTCTGAACAATTTTGTGCAGAATTTTGTGCCTGTTATTAAGACTGTGGGAGAGGGAGGTGATGCTTTTCAGAACAATGGAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGTAACAACCATAACCAGGGCAGAAGGAGAATGAACAATAGAGCTTTTAAGGCTCAAAGAGAAGATAGCATTAGGAGGACAGTATATGTTTCTGACATCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0189M10-XfmMd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710502" ref_strand="+" ref_description="SGN-E710502 [FA55CE08]">
      <seq>ccctttttctcaaatcaaaataaataaaaattggaacttttgattacccttttcgtttattgtaatcatacaattctgggtttagatttttttttgtaaattttgagtattttttgtatatattttgtgcatttccatggcggctgatgcacaagtatgtggcgagacagcattgattgaggctccggctgttcaatcactgttgtcaaacactgatgataataaattttctgatgtgggttcggaagaatctgactgtaattctgagaaaaatgtgaattctgaatctgtagataatggggggaaggattgttcggatgctaaatctgattataaaatgcaagatattgttgacatgttgacgaaactcaagttgaatccactggcgaaggagtttgttccttcttattttaatcgcgaccagatgcttctgaacacttttgtgcagaattttgcgcctgttattaagactgtgggacagggaggcgatgctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0189M10-XfmMd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0189M10.2" temp_strand="-" temp_description="C07HBa0189M10.2  AC216425.2 htgs_phase:3 submitted_to_sgn_as:gi|167341761|gb|AC216425.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0189M10, complete sequence">
        <position start="38215" stop="37127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37922" g_stop="37427" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0189M10.2" gen_strand="-" ref_id="SGN-E710502" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0189M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37922" e_stop="37427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTAAATCTCAAATCAAAATAAATAAAAATTGGAACTTTTGATTACCCTTTTCGTTTATTGTAATCATACAATTCTGGGTTTAGATTTTTTTTTGTAAATTTTGAGTATTTTTTGTATATATTTTGTGCATTTCCATGGCGGCTGATGCACAAGTATGTGGCGAGACAGCAGTGATTGAGGCTCCGGCTGTTCAATCACTGTTGTCAAACACTGATGATAATAAATTTTCTGATGTGGGTTCGGAAGAATCTGAGTGTAATTCTGAGAAAAATGTGAATTCTGAATCTGTAGATAATGGGGGGAAGGATTGTTCGGATGTTAAATCTGATTATAAAATGCAAGATATTGTTGACATGTTGAAGAAACTCAAGTTGAATCCACTGGCGAAGGAGTTTGTTCCTTCTTATTTTAATCGCGATCAGATGCTTCTGAACAATTTTGTGCAGAATTTTGTGCCTGTTATTAAGACTGTGGGAGAGGGAGGTGATGCTTTT</genome_strand>
        <mrna_strand>CCCTTTTTCTCAAATCAAAATAAATAAAAATTGGAACTTTTGATTACCCTTTTCGTTTATTGTAATCATACAATTCTGGGTTTAGATTTTTTTTTGTAAATTTTGAGTATTTTTTGTATATATTTTGTGCATTTCCATGGCGGCTGATGCACAAGTATGTGGCGAGACAGCATTGATTGAGGCTCCGGCTGTTCAATCACTGTTGTCAAACACTGATGATAATAAATTTTCTGATGTGGGTTCGGAAGAATCTGACTGTAATTCTGAGAAAAATGTGAATTCTGAATCTGTAGATAATGGGGGGAAGGATTGTTCGGATGCTAAATCTGATTATAAAATGCAAGATATTGTTGACATGTTGACGAAACTCAAGTTGAATCCACTGGCGAAGGAGTTTGTTCCTTCTTATTTTAATCGCGACCAGATGCTTCTGAACACTTTTGTGCAGAATTTTGCGCCTGTTATTAAGACTGTGGGACAGGGAGGCGATGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0189M10-XfmMd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212728" ref_strand="+" ref_description="SGN-E212728 [cLEC-73-L15]">
      <seq>aaaggccaaaacccaaagctaccttcttgaaatttccataaaatcaccttccaacagtctctctctgatcgaattttgttaacaaaaacccttaaaagcttctctctctttcatcaccattccatttctgacctctttttctatatataaaacaaactttcagtcggttttcactaatacattttgccgatcatctaaatctcaaatcaaaataaataaaaattggaacttttgattacccttttcgtttattgtaatcatacaattctgggtttagatttttttttgtaaattttgagtattttttgtatatattttgtgcatttccatggcggctgatgcacaagtatgtggcgagacagcagtgattgaggctccggctgttcaatcactgttgtcaaacactgatgataataaattttctgatgtgggttcggaagaatctgagtgtaattctgagaaaaatgtgaattctgaatctgtagataatggggggaaggattgttcggatgttaaatctgattataaaatgcaagatattgttgacatgttgaagaaactcaagttgaatccactggcgaaggagtttgttccttcttattttaatcgcgatcagatgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0189M10-XfmMd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0189M10.2" temp_strand="-" temp_description="C07HBa0189M10.2  AC216425.2 htgs_phase:3 submitted_to_sgn_as:gi|167341761|gb|AC216425.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0189M10, complete sequence">
        <position start="38414" stop="37193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38114" g_stop="37493" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="622" r_length="622" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0189M10.2" gen_strand="-" ref_id="SGN-E212728" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0189M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38114" e_stop="37493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGCCAAAACCCAAAGCTACCTTCTTGAAATTTCCATAAAATCACCTTCCAACAGTCTCTCTCTGATCGAATTTTGTTAACAAAAACCCTTAAAAGCTTCTCTCTCTTTCATCACCATTCCATTTCTGACCTCTTTTTCTATATATAAAACAAACTTTCAGTCGGTTTTCACTAATACATTTTGCCGATCATCTAAATCTCAAATCAAAATAAATAAAAATTGGAACTTTTGATTACCCTTTTCGTTTATTGTAATCATACAATTCTGGGTTTAGATTTTTTTTTGTAAATTTTGAGTATTTTTTGTATATATTTTGTGCATTTCCATGGCGGCTGATGCACAAGTATGTGGCGAGACAGCAGTGATTGAGGCTCCGGCTGTTCAATCACTGTTGTCAAACACTGATGATAATAAATTTTCTGATGTGGGTTCGGAAGAATCTGAGTGTAATTCTGAGAAAAATGTGAATTCTGAATCTGTAGATAATGGGGGGAAGGATTGTTCGGATGTTAAATCTGATTATAAAATGCAAGATATTGTTGACATGTTGAAGAAACTCAAGTTGAATCCACTGGCGAAGGAGTTTGTTCCTTCTTATTTTAATCGCGATCAGATGCTT</genome_strand>
        <mrna_strand>AAAGGCCAAAACCCAAAGCTACCTTCTTGAAATTTCCATAAAATCACCTTCCAACAGTCTCTCTCTGATCGAATTTTGTTAACAAAAACCCTTAAAAGCTTCTCTCTCTTTCATCACCATTCCATTTCTGACCTCTTTTTCTATATATAAAACAAACTTTCAGTCGGTTTTCACTAATACATTTTGCCGATCATCTAAATCTCAAATCAAAATAAATAAAAATTGGAACTTTTGATTACCCTTTTCGTTTATTGTAATCATACAATTCTGGGTTTAGATTTTTTTTTGTAAATTTTGAGTATTTTTTGTATATATTTTGTGCATTTCCATGGCGGCTGATGCACAAGTATGTGGCGAGACAGCAGTGATTGAGGCTCCGGCTGTTCAATCACTGTTGTCAAACACTGATGATAATAAATTTTCTGATGTGGGTTCGGAAGAATCTGAGTGTAATTCTGAGAAAAATGTGAATTCTGAATCTGTAGATAATGGGGGGAAGGATTGTTCGGATGTTAAATCTGATTATAAAATGCAAGATATTGTTGACATGTTGAAGAAACTCAAGTTGAATCCACTGGCGAAGGAGTTTGTTCCTTCTTATTTTAATCGCGATCAGATGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0189M10-XfmMd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396534" ref_strand="-" ref_description="SGN-E396534 [TUS-24-C19](-)">
      <seq>ttttttttttaattaaaactcgagctgaattcgactgtcattgtatttttcttacatcaaaccttacaggaaagacattaactagtcctatatatatgcatagattgtagacctaactactttatacaaagctactgaggattacataagataaatgaaactgcaatcagccatactgcatcatcatcgtgaacaaatcgttgtttttgcgaaaaatcggagattgtatttacgacacacttgtattctgatttctgagactcaagagtacgagtcttgagacaattttggtttactgggattaaaaaacagttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0189M10-XfmMd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0189M10.2" temp_strand="+" temp_description="C07HBa0189M10.2  AC216425.2 htgs_phase:3 submitted_to_sgn_as:gi|167341761|gb|AC216425.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0189M10, complete sequence">
        <position start="41719" stop="42624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41943" g_stop="41953" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="0.727"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41954" i_stop="42019" i_length="66">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42020" g_stop="42324" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="316" r_length="305" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0189M10.2" gen_strand="+" ref_id="SGN-E396534" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>316</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0189M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396534" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="41943" e_stop="41953"/>
          <exon e_start="42020" e_stop="42324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCTTTTTGGTTTCCTTTCCTTCACATGTAGGGTGTTAATTGCCAATATTTTAAAAAGAACACTAAGACAAACAAATTAAAACTCGAGCTGAATTCGACTGTCATTGTATTTTTCTTACATCAAACCTTACAGGAAAGACATTAACTAGTCCTATATATATGCATAGATTGTAGACCTAACTACTTTATACAAAGCTACTGAGGATTACATAAGATAAATGAAACTGCAATCAGCCATACTGCATCATCATCGTGAACAAATCGTTGTTTTTGCGAAAAATCGGAGATTGTATTTACGACACACTTGTATTCTGATTTCTGAGACTCAAGAGTACGAGTCTTGAGACAATTTTGGTTTACTGGGATTAAAGAACAGTTCC</genome_strand>
        <mrna_strand>TTTTTTTTTTA..................................................................ATTAAAACTCGAGCTGAATTCGACTGTCATTGTATTTTTCTTACATCAAACCTTACAGGAAAGACATTAACTAGTCCTATATATATGCATAGATTGTAGACCTAACTACTTTATACAAAGCTACTGAGGATTACATAAGATAAATGAAACTGCAATCAGCCATACTGCATCATCATCGTGAACAAATCGTTGTTTTTGCGAAAAATCGGAGATTGTATTTACGACACACTTGTATTCTGATTTCTGAGACTCAAGAGTACGAGTCTTGAGACAATTTTGGTTTACTGGGATTAAAAAACAGTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0189M10-XfmMd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354813" ref_strand="+" ref_description="SGN-E354813 [cTOS-19-M10]">
      <seq>tgcgatgtaacaaccattggctccggtgatgagtgcttgagaatccttactcgggaacacaaagtactaatcatggacgcaagtataacaggtatgaactgttatgatgttgccgtcagtgtacatgagaaatttggaaaacgtctcgagaggccacttattgtggcactaactgggaacactgaccaagtgacaaaagaaaactgcttgagagttggaatggatggagttattctgaaacctgtttcaattgataaaatgagaagtgttttatccgggcttttagagcacggaactgttctttaatcccagtaaaccaaaattgtctcaagactcgtactcttgagtctcagaaatcagaatacaagtgtgtcgtaaatacaatctccgatttttcgcaaaaacaacgatttgttcacgatgatgatgcagtatggctgatttgcagttcatttatcttatgtaatcctcagtagcttttgtataaggtattaggtctancatctatgcatatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0189M10-XfmMd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0189M10.2" temp_strand="-" temp_description="C07HBa0189M10.2  AC216425.2 htgs_phase:3 submitted_to_sgn_as:gi|167341761|gb|AC216425.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0189M10, complete sequence">
        <position start="42915" stop="41800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42615" g_stop="42100" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0189M10.2" gen_strand="-" ref_id="SGN-E354813" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0189M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42615" e_stop="42100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCGATGTAACAACCATTGGCTCCGGTGATGAGTGCTTGAGAATCCTTACTCGGGAACACAAAGTACTAATCATGGACGCAAGTATAACAGGTATGAACTGTTATGATGTTGCCGTCAGTGTACATGAGAAATTTGGAAAACGTCTCGAGAGGCCACTTATTGTGGCACTAACTGGGAACACTGACCAAGTGACAAAAGAAAACTGCTTGAGAGTTGGAATGGATGGAGTTATTCTGAAACCTGTTTCAATTGATAAAATGAGAAGTGTTTTATCCGGGCTTTTAGAGCACGGAACTGTTCTTTAATCCCAGTAAACCAAAATTGTCTCAAGACTCGTACTCTTGAGTCTCAGAAATCAGAATACAAGTGTGTCGTAAATACAATCTCCGATTTTTCGCAAAAACAACGATTTGTTCACGATGATGATGCAGTATGGCTGA-TTGCAGTTTCATTTATCTTATGTAATCCTCAGTAGC-TTTGTATAAAGTAGTTAGGTCTACAATCTATGCATATAT</genome_strand>
        <mrna_strand>TGCGATGTAACAACCATTGGCTCCGGTGATGAGTGCTTGAGAATCCTTACTCGGGAACACAAAGTACTAATCATGGACGCAAGTATAACAGGTATGAACTGTTATGATGTTGCCGTCAGTGTACATGAGAAATTTGGAAAACGTCTCGAGAGGCCACTTATTGTGGCACTAACTGGGAACACTGACCAAGTGACAAAAGAAAACTGCTTGAGAGTTGGAATGGATGGAGTTATTCTGAAACCTGTTTCAATTGATAAAATGAGAAGTGTTTTATCCGGGCTTTTAGAGCACGGAACTGTTCTTTAATCCCAGTAAACCAAAATTGTCTCAAGACTCGTACTCTTGAGTCTCAGAAATCAGAATACAAGTGTGTCGTAAATACAATCTCCGATTTTTCGCAAAAACAACGATTTGTTCACGATGATGATGCAGTATGGCTGATTTGCAG-TTCATTTATCTTATGTAATCCTCAGTAGCTTTTGTATAAGGTA-TTAGGTCTANCATCTATGCATATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>21</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="5103" PGL_stop="5687"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5103" e_stop="5687"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="5103" e_stop="5687" e_length="585"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5103" stop="5687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253563" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATAGAGGAAATTGAATTAATGAAGAAGTAGAAGATGACACTTTGTTGGTGACTTTGATCTCAAAAGAGTGCTTATCAATATTGTTTGTTTAATTTATTACGGTATGTTATTTGTCTTATTTTACTTTAGTAAACTATTTATTGAAACTTCTTTCAAAGATTAGTTTTTTTAGTCGAAAGTTTTTTGAAAGCATATTTTATATTGAGCAAGAGGTAAGAATAAGATTTATATACATTTCATGACCTGCTTATGAAATCATACTGAATATGTTATTATTATTATTTATTTTAGCAAAATGCTCATGTAGTATATTGTATTGTACCTTAATTGAATGTTTGATGCATGTTTGTGGGGCGGTGAAGCAATATTTGATCCTATATATGAAATAGTTTTTTAGTTGAAGATCGTTCAGCTGATCGTCCTTGAATTTATATACCTTTTATAATATAAAAGTGTCAAATTTGTAATTTAAAAAAAATAATCACCATTCTTATATACTATTTGTAAGAATGATCCTTGTTATTTTTACTTGAACTTAGAAATGATTTAGATGATTTACTTTAAAATTTTAAACATATTGTAGT</gDNA_template>
            <first_frame> H  R  G  N  *  I  N  E  E  V  E  D  D  T  L  L  V  T  L  I  S  K  E  C  L  S  I  L  F  V  *  F  I  T  V  C  Y  L  S  Y  F  T  L  V  N  Y  L  L  K  L  L  S  K  I  S  F  F  S  R  K  F  F  E  S  I  F  Y  I  E  Q  E  V  R  I  R  F  I  Y  I  S  *  P  A  Y  E  I  I  L  N  M  L  L  L  L  F  I  L  A  K  C  S  C  S  I  L  Y  C  T  L  I  E  C  L  M  H  V  C  G  A  V  K  Q  Y  L  I  L  Y  M  K  *  F  F  S  *  R  S  F  S  *  S  S  L  N  L  Y  T  F  Y  N  I  K  V  S  N  L  *  F  K  K  N  N  H  H  S  Y  I  L  F  V  R  M  I  L  V  I  F  T  *  T  *  K  *  F  R  *  F  T  L  K  F  *  T  Y  C  S </first_frame>
            <second_frame>  I  E  E  I  E  L  M  K  K  *  K  M  T  L  C  W  *  L  *  S  Q  K  S  A  Y  Q  Y  C  L  F  N  L  L  R  Y  V  I  C  L  I  L  L  *  *  T  I  Y  *  N  F  F  Q  R  L  V  F  L  V  E  S  F  L  K  A  Y  F  I  L  S  K  R  *  E  *  D  L  Y  T  F  H  D  L  L  M  K  S  Y  *  I  C  Y  Y  Y  Y  L  F  *  Q  N  A  H  V  V  Y  C  I  V  P  *  L  N  V  *  C  M  F  V  G  R  *  S  N  I  *  S  Y  I  *  N  S  F  L  V  E  D  R  S  A  D  R  P  *  I  Y  I  P  F  I  I  *  K  C  Q  I  C  N  L  K  K  I  I  T  I  L  I  Y  Y  L  *  E  *  S  L  L  F  L  L  E  L  R  N  D  L  D  D  L  L  *  N  F  K  H  I  V   </second_frame>
            <third_frame>   *  R  K  L  N  *  *  R  S  R  R  *  H  F  V  G  D  F  D  L  K  R  V  L  I  N  I  V  C  L  I  Y  Y  G  M  L  F  V  L  F  Y  F  S  K  L  F  I  E  T  S  F  K  D  *  F  F  *  S  K  V  F  *  K  H  I  L  Y  *  A  R  G  K  N  K  I  Y  I  H  F  M  T  C  L  *  N  H  T  E  Y  V  I  I  I  I  Y  F  S  K  M  L  M  *  Y  I  V  L  Y  L  N  *  M  F  D  A  C  L  W  G  G  E  A  I  F  D  P  I  Y  E  I  V  F  *  L  K  I  V  Q  L  I  V  L  E  F  I  Y  L  L  *  Y  K  S  V  K  F  V  I  *  K  K  *  S  P  F  L  Y  T  I  C  K  N  D  P  C  Y  F  Y  L  N  L  E  M  I  *  M  I  Y  F  K  I  L  N  I  L  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0189M10.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="7339" PGL_stop="6821"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7339" e_stop="6821"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="7339" e_stop="6821" e_length="519"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7339" stop="6821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7339" stop="6821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7294" stop="6839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7291" stop="6839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224401" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAGCGCCAGCAAATGAGTGGAGAGTCCAGTAGCTACAGTCGGAACATGTCATCATCGTACAATGAGCATCCTTCATGTGATAGGTTTTCCAATGGGGAGGAGCTAGAGAATGATGATTACCCTCATGCTGAGGGCACCATGCACGTGTCACCTGAAAGCCATCTGGAAATACCAAGGGAGGACGGTGAATGGGCTGATCATGGTTCCATGGTAGCCGAAGTTGGAACTAGTTATGCAGTCTCTGACGAAATGGAAGATGATGCTTCATTCCCTCTGCAGGGTGAAATGGTAAGCGATCTTCAACCCAACACTAGTTCAATAGTTCCCGAGAATTTTGAAGAGCAGATGATGTTAGCTATGGCTGTTTCACTGGCTGAGGCAAGTGCACGGTCTAGTCCACCCGGGGTGGCCTGGCACTAGTAGTGCTATCGATGTGGGTTATGAGGATTCCACTTGTGTTGCATTGCCACTCAACCCAAAAAGAAAAAGTAAAAAAAGAAAATGCTTCTACTTTTTTT</gDNA_template>
            <first_frame> *  A  P  A  N  E  W  R  V  Q  *  L  Q  S  E  H  V  I  I  V  Q  *  A  S  F  M  *  *  V  F  Q  W  G  G  A  R  E  *  *  L  P  S  C  *  G  H  H  A  R  V  T  *  K  P  S  G  N  T  K  G  G  R  *  M  G  *  S  W  F  H  G  S  R  S  W  N  *  L  C  S  L  *  R  N  G  R  *  C  F  I  P  S  A  G  *  N  G  K  R  S  S  T  Q  H  *  F  N  S  S  R  E  F  *  R  A  D  D  V  S  Y  G  C  F  T  G  *  G  K  C  T  V  *  S  T  R  G  G  L  A  L  V  V  L  S  M  W  V  M  R  I  P  L  V  L  H  C  H  S  T  Q  K  E  K  V  K  K  E  N  A  S  T  F  F </first_frame>
            <second_frame>  E  R  Q  Q  M  S  G  E  S  S  S  Y  S  R  N  M  S  S  S  Y  N  E  H  P  S  C  D  R  F  S  N  G  E  E  L  E  N  D  D  Y  P  H  A  E  G  T  M  H  V  S  P  E  S  H  L  E  I  P  R  E  D  G  E  W  A  D  H  G  S  M  V  A  E  V  G  T  S  Y  A  V  S  D  E  M  E  D  D  A  S  F  P  L  Q  G  E  M  V  S  D  L  Q  P  N  T  S  S  I  V  P  E  N  F  E  E  Q  M  M  L  A  M  A  V  S  L  A  E  A  S  A  R  S  S  P  P  G  V  A  W  H  *  *  C  Y  R  C  G  L  *  G  F  H  L  C  C  I  A  T  Q  P  K  K  K  K  *  K  K  K  M  L  L  L  F   </second_frame>
            <third_frame>   S  A  S  K  *  V  E  S  P  V  A  T  V  G  T  C  H  H  R  T  M  S  I  L  H  V  I  G  F  P  M  G  R  S  *  R  M  M  I  T  L  M  L  R  A  P  C  T  C  H  L  K  A  I  W  K  Y  Q  G  R  T  V  N  G  L  I  M  V  P  W  *  P  K  L  E  L  V  M  Q  S  L  T  K  W  K  M  M  L  H  S  L  C  R  V  K  W  *  A  I  F  N  P  T  L  V  Q  *  F  P  R  I  L  K  S  R  *  C  *  L  W  L  F  H  W  L  R  Q  V  H  G  L  V  H  P  G  W  P  G  T  S  S  A  I  D  V  G  Y  E  D  S  T  C  V  A  L  P  L  N  P  K  R  K  S  K  K  R  K  C  F  Y  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0189M10.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7338" stop="6919"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ERQQMSGESSSYSRNMSSSYNEHPSCDRFSNGEELENDDYPHAEGTMHVSPESHLEIPREDGEWADHGSMVAEVGTSYAVSDEMEDDASFPLQGEMVSDLQPNTSSIVPENFEEQMMLAMAVSLAEASARSSPPGVAWH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="14139" PGL_stop="13497"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14139" e_stop="13939"/>
            <exon e_start="13826" e_stop="13497"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="0.995"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="14139" e_stop="13939" e_length="201"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="13938" i_stop="13827" i_length="112"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="13826" e_stop="13497" e_length="330"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14139" stop="13939"/>
              <exon start="13826" stop="13497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14133" stop="13939"/>
              <exon start="13826" stop="13737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248751" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAGAGGATAAAATATATATAAAAAAATTATATTGTTCTTAGACAAAGTACTATTTTTTTTATATTATATATAAAAATTGTACAATAATATACGTGTAAATCAGATATCGAAACACACACTACAAATTTTTGTATCAGAGGCGAAACTTCTGATCTTGTTCCCTCCTCCTCTCTCTTTTCTCCTGTTGCCTTCTTCCTCAG : GATGGGTGAATTTGTGTTGTTGAAATTTCATGTATTTTATGTTGTGGGAGTTTTGTATTTTGAGATGTGAAAATTAGGGCTAGGAGATTCTTGTTTCTTTGCTGTTTTTTTTTTTGGGTTTGTTTTTTGGGGGAATTGTTTTTGGATGGGTAATAAGTTGGGAAGGAGGAAACAAGTGGTGGATGATAAGTACACTAGGCCTCAGGGGTTGTACCAGCATAAGGATGTGGATGTTAAGAAGCTTCGAAAACTCATTCTTGATTCCAAGCTTGCTCCTTGCTACCCTGGTGATGACGATTGTCCCAATGCTAACCTTGAAGAATGCCCCAT</gDNA_template>
            <first_frame> *  E  D  K  I  Y  I  K  K  L  Y  C  S  *  T  K  Y  Y  F  F  Y  I  I  Y  K  N  C  T  I  I  Y  V  *  I  R  Y  R  N  T  H  Y  K  F  L  Y  Q  R  R  N  F  *  S  C  S  L  L  L  S  L  F  S  C  C  L  L  P  Q  :  D  G  *  I  C  V  V  E  I  S  C  I  L  C  C  G  S  F  V  F  *  D  V  K  I  R  A  R  R  F  L  F  L  C  C  F  F  F  W  V  C  F  L  G  E  L  F  L  D  G  *  *  V  G  K  E  E  T  S  G  G  *  *  V  H  *  A  S  G  V  V  P  A  *  G  C  G  C  *  E  A  S  K  T  H  S  *  F  Q  A  C  S  L  L  P  W  *  *  R  L  S  Q  C  *  P  *  R  M  P  H </first_frame>
            <second_frame>  K  R  I  K  Y  I  *  K  N  Y  I  V  L  R  Q  S  T  I  F  F  I  L  Y  I  K  I  V  Q  *  Y  T  C  K  S  D  I  E  T  H  T  T  N  F  C  I  R  G  E  T  S  D  L  V  P  S  S  S  L  F  S  P  V  A  F  F  L  R :   M  G  E  F  V  L  L  K  F  H  V  F  Y  V  V  G  V  L  Y  F  E  M  *  K  L  G  L  G  D  S  C  F  F  A  V  F  F  F  G  F  V  F  W  G  N  C  F  W  M  G  N  K  L  G  R  R  K  Q  V  V  D  D  K  Y  T  R  P  Q  G  L  Y  Q  H  K  D  V  D  V  K  K  L  R  K  L  I  L  D  S  K  L  A  P  C  Y  P  G  D  D  D  C  P  N  A  N  L  E  E  C  P   </second_frame>
            <third_frame>   R  G  *  N  I  Y  K  K  I  I  L  F  L  D  K  V  L  F  F  L  Y  Y  I  *  K  L  Y  N  N  I  R  V  N  Q  I  S  K  H  T  L  Q  I  F  V  S  E  A  K  L  L  I  L  F  P  P  P  L  S  F  L  L  L  P  S  S  S   : G  W  V  N  L  C  C  *  N  F  M  Y  F  M  L  W  E  F  C  I  L  R  C  E  N  *  G  *  E  I  L  V  S  L  L  F  F  F  L  G  L  F  F  G  G  I  V  F  G  W  V  I  S  W  E  G  G  N  K  W  W  M  I  S  T  L  G  L  R  G  C  T  S  I  R  M  W  M  L  R  S  F  E  N  S  F  L  I  P  S  L  L  L  A  T  L  V  M  T  I  V  P  M  L  T  L  K  N  A  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0189M10.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13756" stop="13499"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLGLGDSCFFAVFFFGFVFWGNCFWMGNKLGRRKQVVDDKYTRPQGLYQHKDVDVKKLRKLILDSKLAPCYPGDDDCPNANLEECP</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0189M10.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13743" stop="13498"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EILVSLLFFFLGLFFGGIVFGWVISWEGGNKWWMISTLGLRGCTSIRMWMLRSFENSFLIPSLLLATLVMTIVPMLTLKNAP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="38114" PGL_stop="30665"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38114" e_stop="37412"/>
            <exon e_start="35981" e_stop="35871"/>
            <exon e_start="35780" e_stop="35736"/>
            <exon e_start="33481" e_stop="33409"/>
            <exon e_start="33321" e_stop="33209"/>
            <exon e_start="33068" e_stop="33009"/>
            <exon e_start="32840" e_stop="32793"/>
            <exon e_start="32709" e_stop="32641"/>
            <exon e_start="32253" e_stop="32192"/>
            <exon e_start="30953" e_stop="30665"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.911" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.052" acc_prob="0.670" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.634" acc_prob="0.783" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.881" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38114" e_stop="37412" e_length="703"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.965">
            <gDNA_intron_boundary i_start="37411" i_stop="35982" i_length="1430"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35981" e_stop="35871" e_length="111"/>
          </exon>
          <intron i_serial="2" don_prob="0.981" acc_prob="0.911">
            <gDNA_intron_boundary i_start="35870" i_stop="35781" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35780" e_stop="35736" e_length="45"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="35735" i_stop="33482" i_length="2254"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="33481" e_stop="33409" e_length="73"/>
          </exon>
          <intron i_serial="4" don_prob="0.052" acc_prob="0.670">
            <gDNA_intron_boundary i_start="33408" i_stop="33322" i_length="87"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="33321" e_stop="33209" e_length="113"/>
          </exon>
          <intron i_serial="5" don_prob="0.986" acc_prob="0.994">
            <gDNA_intron_boundary i_start="33208" i_stop="33069" i_length="140"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="33068" e_stop="33009" e_length="60"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.978">
            <gDNA_intron_boundary i_start="33008" i_stop="32841" i_length="168"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="32840" e_stop="32793" e_length="48"/>
          </exon>
          <intron i_serial="7" don_prob="0.634" acc_prob="0.783">
            <gDNA_intron_boundary i_start="32792" i_stop="32710" i_length="83"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="32709" e_stop="32641" e_length="69"/>
          </exon>
          <intron i_serial="8" don_prob="0.995" acc_prob="0.996">
            <gDNA_intron_boundary i_start="32640" i_stop="32254" i_length="387"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="32253" e_stop="32192" e_length="62"/>
          </exon>
          <intron i_serial="9" don_prob="0.881" acc_prob="0.998">
            <gDNA_intron_boundary i_start="32191" i_stop="30954" i_length="1238"/>
          </intron>
          <exon e_serial="10" e_score="0.979">
            <gDNA_exon_boundary e_start="30953" e_stop="30665" e_length="289"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38114" stop="37493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37922" stop="37427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37773" stop="37412"/>
              <exon start="35981" stop="35871"/>
              <exon start="35780" stop="35736"/>
              <exon start="33481" stop="33409"/>
              <exon start="33321" stop="33209"/>
              <exon start="33068" stop="33009"/>
              <exon start="32840" stop="32793"/>
              <exon start="32709" stop="32657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37767" stop="37412"/>
              <exon start="35981" stop="35877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35769" stop="35736"/>
              <exon start="33481" stop="33409"/>
              <exon start="33321" stop="33209"/>
              <exon start="33068" stop="33009"/>
              <exon start="32840" stop="32793"/>
              <exon start="32709" stop="32641"/>
              <exon start="32253" stop="32192"/>
              <exon start="30953" stop="30929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35769" stop="35736"/>
              <exon start="33481" stop="33409"/>
              <exon start="33321" stop="33209"/>
              <exon start="33068" stop="33009"/>
              <exon start="32840" stop="32793"/>
              <exon start="32709" stop="32641"/>
              <exon start="32253" stop="32192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35769" stop="35736"/>
              <exon start="33481" stop="33409"/>
              <exon start="33321" stop="33209"/>
              <exon start="33068" stop="33009"/>
              <exon start="32840" stop="32793"/>
              <exon start="32709" stop="32641"/>
              <exon start="32253" stop="32222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35769" stop="35736"/>
              <exon start="33481" stop="33409"/>
              <exon start="33321" stop="33209"/>
              <exon start="33068" stop="33009"/>
              <exon start="32840" stop="32793"/>
              <exon start="32709" stop="32641"/>
              <exon start="32253" stop="32222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33481" stop="33409"/>
              <exon start="33321" stop="33209"/>
              <exon start="33068" stop="33009"/>
              <exon start="32840" stop="32793"/>
              <exon start="32709" stop="32641"/>
              <exon start="32253" stop="32192"/>
              <exon start="30953" stop="30824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33481" stop="33409"/>
              <exon start="33321" stop="33209"/>
              <exon start="33068" stop="33009"/>
              <exon start="32840" stop="32793"/>
              <exon start="32709" stop="32641"/>
              <exon start="32253" stop="32218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33434" stop="33409"/>
              <exon start="33321" stop="33209"/>
              <exon start="33068" stop="33009"/>
              <exon start="32840" stop="32793"/>
              <exon start="32709" stop="32641"/>
              <exon start="32253" stop="32192"/>
              <exon start="30953" stop="30892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32683" stop="32641"/>
              <exon start="32253" stop="32192"/>
              <exon start="30953" stop="30665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375745" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGGCCAAAACCCAAAGCTACCTTCTTGAAATTTCCATAAAATCACCTTCCAACAGTCTCTCTCTGATCGAATTTTGTTAACAAAAACCCTTAAAAGCTTCTCTCTCTTTCATCACCATTCCATTTCTGACCTCTTTTTCTATATATAAAACAAACTTTCAGTCGGTTTTCACTAATACATTTTGCCGATCATCTAAATCTCAAATCAAAATAAATAAAAATTGGAACTTTTGATTACCCTTTTCGTTTATTGTAATCATACAATTCTGGGTTTAGATTTTTTTTTGTAAATTTTGAGTATTTTTTGTATATATTTTGTGCATTTCCATGGCGGCTGATGCACAAGTATGTGGCGAGACAGCAGTGATTGAGGCTCCGGCTGTTCAATCACTGTTGTCAAACACTGATGATAATAAATTTTCTGATGTGGGTTCGGAAGAATCTGAGTGTAATTCTGAGAAAAATGTGAATTCTGAATCTGTAGATAATGGGGGGAAGGATTGTTCGGATGTTAAATCTGATTATAAAATGCAAGATATTGTTGACATGTTGAAGAAACTCAAGTTGAATCCACTGGCGAAGGAGTTTGTTCCTTCTTATTTTAATCGCGATCAGATGCTTCTGAACAATTTTGTGCAGAATTTTGTGCCTGTTATTAAGACTGTGGGAGAGGGAGGTGATGCTTTTCAGAACAATGGAAAG : AGAGGTAACAACCATAACCAGGGCAGAAGGAGAATGAACAATAGAGCTTTTAAGGCTCAAAGAGAAGATAGCATTAGGAGGACAGTATATGTTTCTGACATCGATCACAAT : ATAACAGAAGAGCGTCTTGCTGGATTATTTAGCGCTTATGGACAA : GTTGTTGACTGCAGAGTTTGTGGTGATCCCCACTCTCGCCTTCGCTTTGCCTTTGTGGAATTCGCCGATGAAT : ACTCAGCAAGAGGTTCACTTAGCCTTTGTGGAACAATATTAGGGTTCTCTCCTCTGAAGGTCCTACCATCAAAAACTGCTATTCTACCCGTGAATCCTACATTCCTTCCTAGG : TCTGAGGATGAGCGTGAGATGTGTGCCAGGACAGTCTACTGCACAAATATTGATAAGAAG : CTTTCTCAAGCTGATGTCAAGAATTTCTTTGAAACAAGATGTGGTGAG : GTGTCTCGCCTGAGGCTTTTGGGGGATCAAGTGCACTCTACCCGTATTGCTTTTGTTGAATTTGTTATG : GCTGAGAGTGCAATTTTGGCGTTGGACTGTTGCGGACAGATTTTGGGATCCCAACGCATCAG : GGTGAGTCCTTCAAAGACACCTGTGAGGCCACGAGTTCCTCGCCCCATGATGCATTAGGCAATCCTTTGTTGCTATCAAGGTCTGGAAAGAGTTGAGCGCAAGCCCTCTTGGATGACTTGAGGTCGCGATGGGAACATGAGACAAACGTTTGTTTCAGTAATTTCCGTCTTTTTCATTCCCACTTCCTTTCAGCTCGCGGTAACTCTTTATCATTACTGAAAATGACTGTTGACCCTGTTTAGCTTAAAGTTTTTAACAGAAATGTCACAACATTTTAGTAGCTCTATA</gDNA_template>
            <first_frame> K  G  Q  N  P  K  L  P  S  *  N  F  H  K  I  T  F  Q  Q  S  L  S  D  R  I  L  L  T  K  T  L  K  S  F  S  L  F  H  H  H  S  I  S  D  L  F  F  Y  I  *  N  K  L  S  V  G  F  H  *  Y  I  L  P  I  I  *  I  S  N  Q  N  K  *  K  L  E  L  L  I  T  L  F  V  Y  C  N  H  T  I  L  G  L  D  F  F  L  *  I  L  S  I  F  C  I  Y  F  V  H  F  H  G  G  *  C  T  S  M  W  R  D  S  S  D  *  G  S  G  C  S  I  T  V  V  K  H  *  *  *  *  I  F  *  C  G  F  G  R  I  *  V  *  F  *  E  K  C  E  F  *  I  C  R  *  W  G  E  G  L  F  G  C  *  I  *  L  *  N  A  R  Y  C  *  H  V  E  E  T  Q  V  E  S  T  G  E  G  V  C  S  F  L  F  *  S  R  S  D  A  S  E  Q  F  C  A  E  F  C  A  C  Y  *  D  C  G  R  G  R  *  C  F  S  E  Q  W  K   : E  R  *  Q  P  *  P  G  Q  K  E  N  E  Q  *  S  F  *  G  S  K  R  R  *  H  *  E  D  S  I  C  F  *  H  R  S  Q   : Y  N  R  R  A  S  C  W  I  I  *  R  L  W  T   : S  C  *  L  Q  S  L  W  *  S  P  L  S  P  S  L  C  L  C  G  I  R  R  *  I :   L  S  K  R  F  T  *  P  L  W  N  N  I  R  V  L  S  S  E  G  P  T  I  K  N  C  Y  S  T  R  E  S  Y  I  P  S  *   : V  *  G  *  A  *  D  V  C  Q  D  S  L  L  H  K  Y  *  *  E   : A  F  S  S  *  C  Q  E  F  L  *  N  K  M  W  *   : G  V  S  P  E  A  F  G  G  S  S  A  L  Y  P  Y  C  F  C  *  I  C  Y   : G  *  E  C  N  F  G  V  G  L  L  R  T  D  F  G  I  P  T  H  Q  :  G  E  S  F  K  D  T  C  E  A  T  S  S  S  P  H  D  A  L  G  N  P  L  L  L  S  R  S  G  K  S  *  A  Q  A  L  L  D  D  L  R  S  R  W  E  H  E  T  N  V  C  F  S  N  F  R  L  F  H  S  H  F  L  S  A  R  G  N  S  L  S  L  L  K  M  T  V  D  P  V  *  L  K  V  F  N  R  N  V  T  T  F  *  *  L  Y  </first_frame>
            <second_frame>  K  A  K  T  Q  S  Y  L  L  E  I  S  I  K  S  P  S  N  S  L  S  L  I  E  F  C  *  Q  K  P  L  K  A  S  L  S  F  I  T  I  P  F  L  T  S  F  S  I  Y  K  T  N  F  Q  S  V  F  T  N  T  F  C  R  S  S  K  S  Q  I  K  I  N  K  N  W  N  F  *  L  P  F  S  F  I  V  I  I  Q  F  W  V  *  I  F  F  C  K  F  *  V  F  F  V  Y  I  L  C  I  S  M  A  A  D  A  Q  V  C  G  E  T  A  V  I  E  A  P  A  V  Q  S  L  L  S  N  T  D  D  N  K  F  S  D  V  G  S  E  E  S  E  C  N  S  E  K  N  V  N  S  E  S  V  D  N  G  G  K  D  C  S  D  V  K  S  D  Y  K  M  Q  D  I  V  D  M  L  K  K  L  K  L  N  P  L  A  K  E  F  V  P  S  Y  F  N  R  D  Q  M  L  L  N  N  F  V  Q  N  F  V  P  V  I  K  T  V  G  E  G  G  D  A  F  Q  N  N  G  K  :  R  G  N  N  H  N  Q  G  R  R  R  M  N  N  R  A  F  K  A  Q  R  E  D  S  I  R  R  T  V  Y  V  S  D  I  D  H  N  :  I  T  E  E  R  L  A  G  L  F  S  A  Y  G  Q  :  V  V  D  C  R  V  C  G  D  P  H  S  R  L  R  F  A  F  V  E  F  A  D  E   : Y  S  A  R  G  S  L  S  L  C  G  T  I  L  G  F  S  P  L  K  V  L  P  S  K  T  A  I  L  P  V  N  P  T  F  L  P  R  :  S  E  D  E  R  E  M  C  A  R  T  V  Y  C  T  N  I  D  K  K  :  L  S  Q  A  D  V  K  N  F  F  E  T  R  C  G  E  :  V  S  R  L  R  L  L  G  D  Q  V  H  S  T  R  I  A  F  V  E  F  V  M  :  A  E  S  A  I  L  A  L  D  C  C  G  Q  I  L  G  S  Q  R  I  R :   V  S  P  S  K  T  P  V  R  P  R  V  P  R  P  M  M  H  *  A  I  L  C  C  Y  Q  G  L  E  R  V  E  R  K  P  S  W  M  T  *  G  R  D  G  N  M  R  Q  T  F  V  S  V  I  S  V  F  F  I  P  T  S  F  Q  L  A  V  T  L  Y  H  Y  *  K  *  L  L  T  L  F  S  L  K  F  L  T  E  M  S  Q  H  F  S  S  S  I </second_frame>
            <third_frame>   R  P  K  P  K  A  T  F  L  K  F  P  *  N  H  L  P  T  V  S  L  *  S  N  F  V  N  K  N  P  *  K  L  L  S  L  S  S  P  F  H  F  *  P  L  F  L  Y  I  K  Q  T  F  S  R  F  S  L  I  H  F  A  D  H  L  N  L  K  S  K  *  I  K  I  G  T  F  D  Y  P  F  R  L  L  *  S  Y  N  S  G  F  R  F  F  F  V  N  F  E  Y  F  L  Y  I  F  C  A  F  P  W  R  L  M  H  K  Y  V  A  R  Q  Q  *  L  R  L  R  L  F  N  H  C  C  Q  T  L  M  I  I  N  F  L  M  W  V  R  K  N  L  S  V  I  L  R  K  M  *  I  L  N  L  *  I  M  G  G  R  I  V  R  M  L  N  L  I  I  K  C  K  I  L  L  T  C  *  R  N  S  S  *  I  H  W  R  R  S  L  F  L  L  I  L  I  A  I  R  C  F  *  T  I  L  C  R  I  L  C  L  L  L  R  L  W  E  R  E  V  M  L  F  R  T  M  E  R :   E  V  T  T  I  T  R  A  E  G  E  *  T  I  E  L  L  R  L  K  E  K  I  A  L  G  G  Q  Y  M  F  L  T  S  I  T  I :   *  Q  K  S  V  L  L  D  Y  L  A  L  M  D  K :   L  L  T  A  E  F  V  V  I  P  T  L  A  F  A  L  P  L  W  N  S  P  M  N  :  T  Q  Q  E  V  H  L  A  F  V  E  Q  Y  *  G  S  L  L  *  R  S  Y  H  Q  K  L  L  F  Y  P  *  I  L  H  S  F  L  G :   L  R  M  S  V  R  C  V  P  G  Q  S  T  A  Q  I  L  I  R  S :   F  L  K  L  M  S  R  I  S  L  K  Q  D  V  V  R :   C  L  A  *  G  F  W  G  I  K  C  T  L  P  V  L  L  L  L  N  L  L  W :   L  R  V  Q  F  W  R  W  T  V  A  D  R  F  W  D  P  N  A  S   : G  *  V  L  Q  R  H  L  *  G  H  E  F  L  A  P  *  C  I  R  Q  S  F  V  A  I  K  V  W  K  E  L  S  A  S  P  L  G  *  L  E  V  A  M  G  T  *  D  K  R  L  F  Q  *  F  P  S  F  S  F  P  L  P  F  S  S  R  *  L  F  I  I  T  E  N  D  C  *  P  C  L  A  *  S  F  *  Q  K  C  H  N  I  L  V  A  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0189M10.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37816" stop="37412"/>
                    <exon start="35981" stop="35871"/>
                    <exon start="35780" stop="35736"/>
                    <exon start="33481" stop="33409"/>
                    <exon start="33321" stop="33209"/>
                    <exon start="33068" stop="33009"/>
                    <exon start="32840" stop="32793"/>
                    <exon start="32709" stop="32641"/>
                    <exon start="32253" stop="32192"/>
                    <exon start="30953" stop="30896"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1041</number_coding_nucleotides>
                  <number_encoded_amino_acids>347</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFFVYILCISMAADAQVCGETAVIEAPAVQSLLSNTDDNKFSDVGSEESECNSEKNVNSESVDNGGKDCSDVKSDYKMQDIVDMLKKLKLNPLAKEFVPSYFNRDQMLLNNFVQNFVPVIKTVGEGGDAFQNNGKRGNNHNQGRRRMNNRAFKAQREDSIRRTVYVSDIDHNITEERLAGLFSAYGQVVDCRVCGDPHSRLRFAFVEFADEYSARGSLSLCGTILGFSPLKVLPSKTAILPVNPTFLPRSEDEREMCARTVYCTNIDKKLSQADVKNFFETRCGEVSRLRLLGDQVHSTRIAFVEFVMAESAILALDCCGQILGSQRIRVSPSKTPVRPRVPRPMMH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="41943" PGL_stop="42324"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41943" e_stop="41953"/>
            <exon e_start="42020" e_stop="42324"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.727"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.727">
            <gDNA_exon_boundary e_start="41943" e_stop="41953" e_length="11"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41954" i_stop="42019" i_length="66"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="42020" e_stop="42324" e_length="305"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41943" stop="41953"/>
              <exon start="42020" stop="42324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396534" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCCTTTTTG : ATTAAAACTCGAGCTGAATTCGACTGTCATTGTATTTTTCTTACATCAAACCTTACAGGAAAGACATTAACTAGTCCTATATATATGCATAGATTGTAGACCTAACTACTTTATACAAAGCTACTGAGGATTACATAAGATAAATGAAACTGCAATCAGCCATACTGCATCATCATCGTGAACAAATCGTTGTTTTTGCGAAAAATCGGAGATTGTATTTACGACACACTTGTATTCTGATTTCTGAGACTCAAGAGTACGAGTCTTGAGACAATTTTGGTTTACTGGGATTAAAGAACAGTTCC</gDNA_template>
            <first_frame> F  P  F  * :   L  K  L  E  L  N  S  T  V  I  V  F  F  L  H  Q  T  L  Q  E  R  H  *  L  V  L  Y  I  C  I  D  C  R  P  N  Y  F  I  Q  S  Y  *  G  L  H  K  I  N  E  T  A  I  S  H  T  A  S  S  S  *  T  N  R  C  F  C  E  K  S  E  I  V  F  T  T  H  L  Y  S  D  F  *  D  S  R  V  R  V  L  R  Q  F  W  F  T  G  I  K  E  Q  F  </first_frame>
            <second_frame>  F  L  F   : D  *  N  S  S  *  I  R  L  S  L  Y  F  S  Y  I  K  P  Y  R  K  D  I  N  *  S  Y  I  Y  A  *  I  V  D  L  T  T  L  Y  K  A  T  E  D  Y  I  R  *  M  K  L  Q  S  A  I  L  H  H  H  R  E  Q  I  V  V  F  A  K  N  R  R  L  Y  L  R  H  T  C  I  L  I  S  E  T  Q  E  Y  E  S  *  D  N  F  G  L  L  G  L  K  N  S  S </second_frame>
            <third_frame>   S  F  L  :  I  K  T  R  A  E  F  D  C  H  C  I  F  L  T  S  N  L  T  G  K  T  L  T  S  P  I  Y  M  H  R  L  *  T  *  L  L  Y  T  K  L  L  R  I  T  *  D  K  *  N  C  N  Q  P  Y  C  I  I  I  V  N  K  S  L  F  L  R  K  I  G  D  C  I  Y  D  T  L  V  F  *  F  L  R  L  K  S  T  S  L  E  T  I  L  V  Y  W  D  *  R  T  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0189M10.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="42615" PGL_stop="42100"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42615" e_stop="42100"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="42615" e_stop="42100" e_length="516"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42615" stop="42100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354813" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCGATGTAACAACCATTGGCTCCGGTGATGAGTGCTTGAGAATCCTTACTCGGGAACACAAAGTACTAATCATGGACGCAAGTATAACAGGTATGAACTGTTATGATGTTGCCGTCAGTGTACATGAGAAATTTGGAAAACGTCTCGAGAGGCCACTTATTGTGGCACTAACTGGGAACACTGACCAAGTGACAAAAGAAAACTGCTTGAGAGTTGGAATGGATGGAGTTATTCTGAAACCTGTTTCAATTGATAAAATGAGAAGTGTTTTATCCGGGCTTTTAGAGCACGGAACTGTTCTTTAATCCCAGTAAACCAAAATTGTCTCAAGACTCGTACTCTTGAGTCTCAGAAATCAGAATACAAGTGTGTCGTAAATACAATCTCCGATTTTTCGCAAAAACAACGATTTGTTCACGATGATGATGCAGTATGGCTGATTGCAGTTTCATTTATCTTATGTAATCCTCAGTAGCTTTGTATAAAGTAGTTAGGTCTACAATCTATGCATATAT</gDNA_template>
            <first_frame> C  D  V  T  T  I  G  S  G  D  E  C  L  R  I  L  T  R  E  H  K  V  L  I  M  D  A  S  I  T  G  M  N  C  Y  D  V  A  V  S  V  H  E  K  F  G  K  R  L  E  R  P  L  I  V  A  L  T  G  N  T  D  Q  V  T  K  E  N  C  L  R  V  G  M  D  G  V  I  L  K  P  V  S  I  D  K  M  R  S  V  L  S  G  L  L  E  H  G  T  V  L  *  S  Q  *  T  K  I  V  S  R  L  V  L  L  S  L  R  N  Q  N  T  S  V  S  *  I  Q  S  P  I  F  R  K  N  N  D  L  F  T  M  M  M  Q  Y  G  *  L  Q  F  H  L  S  Y  V  I  L  S  S  F  V  *  S  S  *  V  Y  N  L  C  I  Y </first_frame>
            <second_frame>  A  M  *  Q  P  L  A  P  V  M  S  A  *  E  S  L  L  G  N  T  K  Y  *  S  W  T  Q  V  *  Q  V  *  T  V  M  M  L  P  S  V  Y  M  R  N  L  E  N  V  S  R  G  H  L  L  W  H  *  L  G  T  L  T  K  *  Q  K  K  T  A  *  E  L  E  W  M  E  L  F  *  N  L  F  Q  L  I  K  *  E  V  F  Y  P  G  F  *  S  T  E  L  F  F  N  P  S  K  P  K  L  S  Q  D  S  Y  S  *  V  S  E  I  R  I  Q  V  C  R  K  Y  N  L  R  F  F  A  K  T  T  I  C  S  R  *  *  C  S  M  A  D  C  S  F  I  Y  L  M  *  S  S  V  A  L  Y  K  V  V  R  S  T  I  Y  A  Y   </second_frame>
            <third_frame>   R  C  N  N  H  W  L  R  *  *  V  L  E  N  P  Y  S  G  T  Q  S  T  N  H  G  R  K  Y  N  R  Y  E  L  L  *  C  C  R  Q  C  T  *  E  I  W  K  T  S  R  E  A  T  Y  C  G  T  N  W  E  H  *  P  S  D  K  R  K  L  L  E  S  W  N  G  W  S  Y  S  E  T  C  F  N  *  *  N  E  K  C  F  I  R  A  F  R  A  R  N  C  S  L  I  P  V  N  Q  N  C  L  K  T  R  T  L  E  S  Q  K  S  E  Y  K  C  V  V  N  T  I  S  D  F  S  Q  K  Q  R  F  V  H  D  D  D  A  V  W  L  I  A  V  S  F  I  L  C  N  P  Q  *  L  C  I  K  *  L  G  L  Q  S  M  H  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0189M10.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42615" stop="42310"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CDVTTIGSGDECLRILTREHKVLIMDASITGMNCYDVAVSVHEKFGKRLERPLIVALTGNTDQVTKENCLRVGMDGVILKPVSIDKMRSVLSGLLEHGTVL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0189M10.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42358" stop="42140"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NEKCFIRAFRARNCSLIPVNQNCLKTRTLESQKSEYKCVVNTISDFSQKQRFVHDDDAVWLIAVSFILCNPQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 41 chains have been computed
$ 
$ memory statistics:
$ 44168 bytes spliced alignments in total
$ 21 spliced alignments have been stored
$ 2103 bytes was the average size of a spliced alignment
$ 11824 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 1970 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 43 backtrace matrices have been allocated
$ 
$ date finished: 2008-11-22 16:55:17
-->
