<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-03-07 04:41:47"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E314264" ref_strand="+" ref_description="SGN-E314264 [cTOA-21-H20]">
      <seq>gattgcagaagctgctgcacggcatttcctcacatctattactgtctatccaataaagtcttgtgcgggatttagtgtggatcagtggcctctaacatctactgggttattgcatgatcgtgaatggattctcaagagcacaaccggtgaaattcttacccaaaagaaggttccagaaatgtgctatatctccacgctgattgatctcaatttgggggaactgtttgtagagtcacctcgttgcaaggagaaattgcagattgaactcaaatccagctcactggtcactgaaagagatgaaatggatatccaaaatcatagatatgaagtcacaagttacaacaatgaggttgatatctggttcagcagggcgattgatcgaccttgcactctactaagaaattccgattcccagagtcactcctgcataaataagaacgggagtcctggcatgtgcagggatgttggtgctagattgaattttgttaatgaagcccaatttctgctgatatctgaagaaagcataaaggacctcaactctaggctgaaatctaatggacgaaggagaaatggtggacaagcagtacaagttggtgtaatgagatttcgacccaatcttgtagcatctagtggtgaacatatgcagaagatggatggagnncatataatattggaggccaatattttatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="92" stop="4620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="392" g_stop="495" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="496" i_stop="694" i_length="199">
            <donor d_prob="0.480" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="695" g_stop="759" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="169" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="760" i_stop="1666" i_length="907">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1667" g_stop="1818" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="321" r_length="152" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1819" i_stop="3454" i_length="1636">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3455" g_stop="3687" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="554" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3688" i_stop="4214" i_length="527">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4215" g_stop="4351" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="690" r_length="136" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E314264" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="392" e_stop="495"/>
          <exon e_start="695" e_stop="759"/>
          <exon e_start="1667" e_stop="1818"/>
          <exon e_start="3455" e_stop="3687"/>
          <exon e_start="4215" e_stop="4351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGCAGAAGCTGCTGCACGGCATTTCCTCACATCTATTACTGTCTATCCAATAAAGTCTTGTGCGGGATTTAGTGTGGATCAGTGGCCTCTAACATCTACTGGTAGCTATTCTGCTACATCTCATAGGAAAATTCAGTAGTTCAATTTTTATGGCACATATGATTTTGTCAAAATCAAGAGATATTTGCTCATTTCCATTGCATATAAGAAATTGATCCATGTTTTCTTTAGAATATCAAAGTATTTTGACTTTCAATGTATCATTCTTACATGTTGTCATTCCGTTCAATATGAATTTAGGGTTATTGCATGATCGTGAATGGATTCTCAAGAGCACAACCGGTGAAATTCTTACCCAAAAGAAGGTAGAATACTTTATAATTCACATCATGTGTGTTGATGCCTGTTATCCATGTGCAATGCGATGGTAAAACTACCTTCATTCACCCATTATAATTTAATTTAGTAAAGTGGAAAACATAGCATTGTTGTCTATCATTTGATCTACCCATCCTTCAATGTGTTTTGCTTTTAACCTTTTTAATCTCCTAGACAAGCCTTACTAATAATTGACTATTTTCTCAAAGTAGCATGCAACTTCTTAATGTGGGTTGTGTGCATTGTCAGGCTACATGAGGTCTTTTTTTCGACCTTCCCAATGAAATTATTTATTTTCTCTCTTTTCTTCTAATTCTTTTTTCTATTTGTTTGAGATCGAGGGGTAGTTGGTGTTTTCTAATTTGATTTAATGTATTTTAGCTTCTTTTTTGAAGCCTTACAATGCTCATTATATAATAGAATTGATTAGATGCCATCCTTTTTGTACAAGATATTCAACAATTCATGGTCTTAAAAAGAAGTTGAATAGCCTATAATCTGTACTACCAATAACATTTCAAGTCCTTTGAATAACTCTCCATTATCTCAATATATAAATCCTATTTTCTCCTGTGTTCCACTACTAACTTTGAAGTGTCTTAATCTCTACACTCCATGTTTTAACCTGTCATCTAATTTACTTATTTTTTGTTTTTCTCGAAAACATTCTTGAAAATATGCAAAGTGTCATGCTCTCGATTGGGATATAATCTCTACTTTTATATCTAGACATGTATTTTTGTATGAGAAGCAAGTTACTACGGAAGCTTATATCTTTGAAAGATAATTAATGATTATTCAAAATTTACTAGCTATTGCCTCTTAATTATTGTTTCCGATCCAGTGTTGATTACTTCTGCATCAATATCTAAGTCAGGTGTATTTGCGTTCTAGGTTCCAGAAATGTGCTATATCTCCACGCTGATTGATCTCAATTTGGGGAAACTGTTTGTAGAGTCACCTCGTTGCAAGGAGAAATTGCAGATTGAACTCAAATCCAGCTCACTGGTCACTGAAAGAGATGAAATGGATATCCAAAATCATAGGTTTGAACTTCATCTTCACTTCTTTCCTTTTGATATTAAATACTTAAAAGTAGCTACCTCTTAAAAAAATAAAAATAAAAAATCACGTGAATCAATATGTAGAGCTTTACAACTCAACAAAGAGATCCACATAGCCGTCAAAAAAAATTCAAACGGCTTTATGTACATACATTTACAGACATAGTATAGAATCTTATAGTACCTACATATTCTTAACTTGGGTGAGCATCTATGTTTTTTCAGACTATTTTATTTGGTCGTATGTGTAAGAGCCCAACTTTTCTTCTATTCTCGAGTTCAATAATTTTTCCTGTACCTATGTTACTCGGAATCTTTCAAAATGTCAAAGGGTGTGTGTCGGATTCTCCAAAGTATTGTATTTTTGGAGAATCCGACACGGGTGCAGCATCAAAAGTGAAGAGCTCGCTCAACTTAGTCCTGTAGCACTAAAACTTTGTATTTTGAAGAAACTTTTTTTTTGAGAAGGATTTGTATTTTGAAGCTTAAGTTGTTAAAACTTTGTGATCGTGTATCTGAACTGACTTAAACAATGTTGTGTTGCAGTTTCATATATGGCTACCATTAAGTGAAGGGTTCTTTCTTCACTTTTACAGTTGTACTTATTTTTTAATCAGAAAGGTGAAGTTTCATTAAGATAACACGGTTTACGTACAGTAGAAAAAGTTAGAAAGGAAAAATAGTGCTCCTTAAGTTTGGTCTAATATTTATGAAGAATTTTGTTTGTGGGCTTGCATGTGAGTTTCTAAGTTCGAACCACTTAGATGTAGTGGTTGAAAAGATGATTAGGGTATGTGCGTTGTACTGATGTAAGTTCTGTTGTTGACCGTCTGGTATGGTTGCCTTTAGTGAAGCATGAGAAGTTATAATTCTTGACAATGTTTGCCCTAATATTTTTGAACGGTGGTGTCCAGGCCAACTTGTGCGACCTGGACTGTTCCATTAGGTACCAACTGCCTCCCACCCAGCAACACTACTATCGGGTAACTTTGTCTACCAAGGCTTAGGCAGATAGGAAGAAATCACCTAGTGTTTCGTCTCTTCTGTGGTTTGAACCTTATCTCTAAGGTTGCACGCACTTCATTGACCACTAGGCCACACATTTCGACCTTCACTGTGTTTGCTTTTCAAAGATTGTACTCATTGTTTTCCTTGTATGTTGGAGACTATAATTATGTTCTTTGTCATGTAATAGAGTGTTTGATTAGGATAAAGTGGGTGTATTTCTCATCTGAACAAAGAAATAGTTTATGGAACTAACTGTTTTTAAAGCTTTGGCTCATTGTCGAGCTTCAAACTTCAATTTATTCGTTCCAAAGCAGATTTTAAACAGTTGTGGTTTAATCAGTTGCTTTATTATACTTCCCAAAAGACAAAACCAAGACAAGAAGAAACTAAAAAAGGAGTGAACAGTATTTTGAGAAGGATGTCATTATTTTAGTCTGCATGTTCTTAAAATAGCTACCGTTATCTGTGACTACTGTGGTAGTTCATGTGGAAATGAAAAAGAATCTAAAAAGAAGTGTAGTTCATGAATACAGTCTATGTAAGTGGTGTTTTTGAATAGCAGTATTATAGTAATGCTCAATCATTTTTCATGTCTTTTTGATTTGGGTAGATATGAAGTCACAAGTTACAACAATGAGGTTGATATCTGGTTCAGCAGGGCGATTGATCGACCTTGCACTCTACTAAGAAATTCCGATTCCCAGAGTCACTCCTGCATAAATAAGAACGGGAGTCCTGGCATGTGCAGGGATGTTGGTGCTAGATTGAATTTTGTTAATGAAGCCCAATTTCTGCTGATATCTGAAGAAAGCATAAAGGACCTCAACTCTAGGCTGAAATCTAGTATGTTTTCTTTTCTTTTCTCTTTGTTAGTAGTGAGCAAACTCTCTTTCTGGTATTGAGCTCTTCTGAAATAGGAATATAAGGAAACTAGAGAATGCACCCAATACAATTGGCCAATTTGAGGCTATTCCTCTGAGCTGAATGCATAACAACTTTTAAACCATGTCTATACAATATTAGTGCAATAACTTCTGTTCAGAGGATACAAATGCTTTGCATTACTTGAATCTATGTTAGACGTGGTGGTATTTCTGTTTTTAGAGGAGACTTGAGTTCAGAAGTCTTACCTGTAGTAGCATGGCTGTTGCGGCTGTAGGAGGATCTAAAAGGAATTAAAAGTAAATGTATTTGCTGTCTGTTCAGTCTTGTATAGTCCACTATACTTGAATTATTTTCCTGCATAAGTCACTTGTATCACTTAATATGCTTCCTCTGATGGTGGTTAGTGATTTTTACAGAAAGGTTTATGTATAAAGCAAATAGGTTCATCAAAAATTCATTCGACCTTTTTTCTTTAATCTTTTTAGATGGACGAAGGAGAAATGGTGGACAAGCAGTACAAGTTGGTGTAATGAGATTTCGACCCAATCTTGTAGCATCTAGTGGTGAACCATATGCAGAAGATGGATGGAGCA-ATATAAATATTGGAGGCAAATATTTTATG</genome_strand>
        <mrna_strand>GATTGCAGAAGCTGCTGCACGGCATTTCCTCACATCTATTACTGTCTATCCAATAAAGTCTTGTGCGGGATTTAGTGTGGATCAGTGGCCTCTAACATCTACTG.......................................................................................................................................................................................................GGTTATTGCATGATCGTGAATGGATTCTCAAGAGCACAACCGGTGAAATTCTTACCCAAAAGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAAATGTGCTATATCTCCACGCTGATTGATCTCAATTTGGGGGAACTGTTTGTAGAGTCACCTCGTTGCAAGGAGAAATTGCAGATTGAACTCAAATCCAGCTCACTGGTCACTGAAAGAGATGAAATGGATATCCAAAATCATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGAAGTCACAAGTTACAACAATGAGGTTGATATCTGGTTCAGCAGGGCGATTGATCGACCTTGCACTCTACTAAGAAATTCCGATTCCCAGAGTCACTCCTGCATAAATAAGAACGGGAGTCCTGGCATGTGCAGGGATGTTGGTGCTAGATTGAATTTTGTTAATGAAGCCCAATTTCTGCTGATATCTGAAGAAAGCATAAAGGACCTCAACTCTAGGCTGAAATCTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGACGAAGGAGAAATGGTGGACAAGCAGTACAAGTTGGTGTAATGAGATTTCGACCCAATCTTGTAGCATCTAGTGGTGAA-CATATGCAGAAGATGGATGGAGNNCATAT-AATATTGGAGGCCAATATTTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E354772" ref_strand="+" ref_description="SGN-E354772 [cTOS-19-I23]">
      <seq>ctttggcaactttagcaggttacaggagagcaaaggggaaaataatgtttggcatactgctaagatatgagaataatacgaaaaccgagtcagatacatggattcgtgtgggagaagaaataattccaaatggagataggcattgattgtttttcgtggaagttcctatttgagacttgtaagtagtcacaacagaggtgatacaagtgttcaatattgtgaagcagcgcaaaaaacacttgctctagccaggtcaatacatcaaactgtactttgttgctgttctctatctgcaaaagagtatgttcttctaaaagaactcgctaagatcttcattctttgtaaccagtactattataagctaataaatacccaatcgtaatattaacttctttggggctgcgtatagttttatgtgtaagtttttagtttgtgtagtgactcggtgtgcaagtacaacccatggatgatgcaaaaatcctcaggacatcgccatgatcttattaacagtgctttctcgagagttgagaccaaacgggtggaaaagatagtgaacgttgaaagctttattcctctcaactatgaaggttaattatgaatgtacatgttaatacttagcaatattggtggaataatatgtttgtcattttgttttcaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="4287" stop="5636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4587" g_stop="4621" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4622" i_stop="4714" i_length="93">
            <donor d_prob="0.201" d_score="0.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4715" g_stop="5341" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="662" r_length="627" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E354772" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4587" e_stop="4621"/>
          <exon e_start="4715" e_stop="5341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGGCAACTTTAGCAGGTTACAGGAGAGCAAAGGTTAGAACCCACCTAAAAATGAAGAAACCCCCCCAAAAAATGCAGTTTGCTTGCTTAGTTAATTGCTTCTTACCATATCTCCCTTGCAAACAGGGGAAAATAATGTTTGGCATACTGCTAAGATATGAGAATAATACGAAAACCGAGTCAGATACATGGATTCGTGTGGGAGAAGAAATAATTCCAAATGGAGATAGGCATTGATTGTTTTTCGTGGAAGTTCCTATTTGAGACTTGTAAGTAGTCACAACAGAGGTGATACAAGTGTTCAATATTGTGAAGCAGCGCAAAAAACACTTGCTCTAGCCAGGTCAATACATCAAACTGTACTTTGTTGCTGTTCTCTATCTGCAAAAGAGTATGTTCTTCTAAAAGAACTCGCTAAGATCTTCATTCTTTGTAACCAGTACTATTATAAGCTAATAAATACCCAATCGTAATATTAACTTCTTTGGGGCTGCGTATAGTTTTATGTGTAAGTTTTTAGTTTGTGTAGTGACTCGGTGTGCAAGTACAACCCATGGATGATGCAAAAATCCTCAGGACATCGCCATGATCTTATTAACAGTGCTTTCTCGAGAGTTGAGACCAAACGGGTGGAAAAGATAGTGAACGTTGAAAGCTTTATTCCTCTCAACTATGAAGGTTAATTATGAATGTACATGTTAATACTTAGCAATATTGGTGGAATAATATGTTTGTCATTTTGTTTTCACTCTT</genome_strand>
        <mrna_strand>CTTTGGCAACTTTAGCAGGTTACAGGAGAGCAAAG.............................................................................................GGGAAAATAATGTTTGGCATACTGCTAAGATATGAGAATAATACGAAAACCGAGTCAGATACATGGATTCGTGTGGGAGAAGAAATAATTCCAAATGGAGATAGGCATTGATTGTTTTTCGTGGAAGTTCCTATTTGAGACTTGTAAGTAGTCACAACAGAGGTGATACAAGTGTTCAATATTGTGAAGCAGCGCAAAAAACACTTGCTCTAGCCAGGTCAATACATCAAACTGTACTTTGTTGCTGTTCTCTATCTGCAAAAGAGTATGTTCTTCTAAAAGAACTCGCTAAGATCTTCATTCTTTGTAACCAGTACTATTATAAGCTAATAAATACCCAATCGTAATATTAACTTCTTTGGGGCTGCGTATAGTTTTATGTGTAAGTTTTTAGTTTGTGTAGTGACTCGGTGTGCAAGTACAACCCATGGATGATGCAAAAATCCTCAGGACATCGCCATGATCTTATTAACAGTGCTTTCTCGAGAGTTGAGACCAAACGGGTGGAAAAGATAGTGAACGTTGAAAGCTTTATTCCTCTCAACTATGAAGGTTAATTATGAATGTACATGTTAATACTTAGCAATATTGGTGGAATAATATGTTTGTCATTTTGTTTTCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E345989" ref_strand="+" ref_description="SGN-E345989 [cTOF-24-I1]">
      <seq>ttccttcggaaatggagatattcgtcgctctaaatgcttcaaatttgagctccgtttcccttttacaattgggttttcttcgccttgccgtaaatctgcactttcacttcaacgccggcgggtccacgttaccagggcttccgttgctctagaacagcaagctcaaactaaggtcgctgtcatcagagttggaacacgaggaaggacagccccctagctcttgcccaagcttatgagactcgagaaaagctaatagcctcgtttcctgacctggctgaagagggagccattgagatagtaataataaaaaccacaggtgataagatattaagtcagcctcttgcagatattggtggaaaagggttgttcacaaaagaaatagacgaagccctcatcaatggcgatattgatattgctgtccactcaatgaaagatgtgcccacatatctgccagagaagactatcttaccgtgcaaccttccacgtgaagatgtgagggatgcattcatttctttaactgcaggttccctggctgaacttccatcaggaagcacaattggtactgcttcactgaggagaaagtcccagattctccaccgctatccctcactcaatgtgttggagaatttcagaggcaatgtccagacaaggttgaagaaaactgatgaggggagtagtcaagctacattattggcactggcagggcttaagcgtctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="7543" stop="10478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7843" g_stop="8047" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8048" i_stop="9053" i_length="1006">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9054" g_stop="9464" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="615" r_length="411" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9465" i_stop="10075" i_length="611">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10076" g_stop="10178" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="718" r_length="103" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E345989" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7843" e_stop="8047"/>
          <exon e_start="9054" e_stop="9464"/>
          <exon e_start="10076" e_stop="10178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTCGGAAATGGAGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAGGTACTGTCAATTATTTACCCAATCTATTTGTACAAAAATACCTAATGGGCTTTATCTCAGCTTAAAGTTACAGTCTTTCAACTGAAAATTCGGATGTAAAAAGATTGCCGCTTTTACCAATTAATTGCTGTTTAGTCTTAGGTTTTGATAGATGATTCAAGATTAAATAATTGATGCTTTATTCTTATGTTTTTCTCTTGAGTGATAAAGTAAATATGGAAAAAAATTGTATTTGAAGTACATGAACAAGTATTTATCATATTATTCACTGAGGTGTCATTTAGTTCAATAGTCTCAGAACATTTAGTAATCAGAAATTAAAATGTGGGGTTAATGGCCCCATAGTTGGACAGAATCTAGATTTCTCTCATATCCTCCAAAGTAGTATAGTTTTGAAGGATCTGACACCCACCCGTAGGCAGTTTTTAAGAGTAGAGACATAATCTACTAACCTTTTCTGCCCTGTAATGTAATGATGCTAGTTGGACATATTTCGGATTAGCTTTATCCCAATTTCTTTCCACAATAGTTAACGGTCATCTTTATGCTTTTATCGATTATTTGTTGTATTTTAGTTATGATGTGTGCTAGTGTTAGTCAAAATGTAAGCTTTTTAAGGGGATCTGGCATTATGGAGAAAACAAAAATACAACTTTGTATGCTTGACTCCTCTTTGTGCTTGCCTTTTAGAAATTAACTAATGTTAGCAAGCAGATAAACCCTTTTTTTCTCCTTGCATTTTCCCCCTGGCATATATTTTCTAGCCAATCTATGTTCTTTTTGATGAATAAAAATATCTTGTTCATACTTCCCTTGTTCCATGAACATATTTGGTAACAACCATGTAATGTATATGGGATGAATTTCAACATTGCTTTGGATTAACTCTTCGTTCTATCTCCTTCTTTGCGTGTTCGGGTGGGATGATGGAAACTGACTGATATATCTATAAAGTGCTTTTGCTAAAACTCTTCTCTTATGGATTACAATGCAATTACTTGTGTAGGACAGCCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAATGTAAGTCTATTACCTATCACATCAAAGTCTCTGAAGAAGACCCATTGATCTCTGAGTGTGTGTTGATATCAGAAACAAAGTGAACTAAGAGTCTCCGTAAATTTTTCCATCAAGCTGCAGCCATAATTTATTTGAGTCATTGCTTCATGTATTGTGTTGGTATATATATGCCTTCTATGAAGGTAAAACCTTGAAAGTTAAATAGTTTACTTATACTACTACTTGGAGATTGTTTGCAACAACTAGGAATATGTTGCAATGGGCCAAATAATAAAAGAACTTCTGTGTGCTCAAAAAGATGGGTAGGATGACCTACGAGTGGAAAAAGAGTAAATTGAGGATTGTGTATTTCTTGTTGTGATATGTTACATAGCTTGGTATGCTCCAGGAGCAGTAATTGTTTTCTTGATAAGCCAAATGCGAAGCTCAGGTTTTCTATATCTGAATATCTTTTAGATGAAGCAAAATTTGTGGTGAAATTTTTTATGGTGGTTACTTCTGGCCTGAATTTTCTTATTTAGCTCAGCTCTGCCAATCTAACAACTTTTCCTCTTTGCTTTTATTTAGTTTGACAAGTCATGCTAATTATTTTATGTGAATTTTGTTTAAAGGTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAG-AAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGA</genome_strand>
        <mrna_strand>TTCCTTCGGAAATGGAGATATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGTTTCCCTTTTA-CAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGCCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAAACTGATGAGGGGAGTAG-TCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E709226" ref_strand="+" ref_description="SGN-E709226 [FA51AC08]">
      <seq>ccggaaatggagaaattcgtcgctctaaatgcttcaaatttgagctccggttcccttttaccaattgggttttcttcgccttgccgtaaatctgcactttcacttcaacgccggcgggtccacgttaccagggcttccgttgctctagaacagcaagctcaaactaaggtcgctgtcatcagagttggaacacgaggaagccccctagctcttgcccaagcttatgagactcgagaaaagctaatagcctcgtttcctgacctggctgaagagggagccattgagatagtaataataaaaaccacaggtgataagatattaagtcagcctcttgcagatattggtggaaaagggttgttcacaaaagaaatagacgaagccctcatcaatggcgatattgatattgctgtccactcaatgaaagatgtgcccacatatctgccagagaagactatcttaccgtgcaaccttccacgtgaagatgtgagggatgcattcatttctttaactgcaggttccctggctgaacttccatcaggaagcacaattggtactgcttcactgaggagaaagtcccagattctccaccgctatccctcactcaatgtgttggagaatttcagaggcaatgtccagacaaggttgaagaaactgaatgagggagtagttcaagctacattattggcactggcagggcttaagcgtctgaatatgacagaaaatgtatcatcgatcctttctatagaggatatgctaccagctgttgctcagggtgccattggtattgcctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="7549" stop="10561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7848" g_stop="8047" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8048" i_stop="9058" i_length="1011">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9059" g_stop="9464" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="606" r_length="406" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9465" i_stop="10075" i_length="611">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10076" g_stop="10261" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="792" r_length="186" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E709226" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7848" e_stop="8047"/>
          <exon e_start="9059" e_stop="9464"/>
          <exon e_start="10076" e_stop="10261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGAAATGGAGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAGGTACTGTCAATTATTTACCCAATCTATTTGTACAAAAATACCTAATGGGCTTTATCTCAGCTTAAAGTTACAGTCTTTCAACTGAAAATTCGGATGTAAAAAGATTGCCGCTTTTACCAATTAATTGCTGTTTAGTCTTAGGTTTTGATAGATGATTCAAGATTAAATAATTGATGCTTTATTCTTATGTTTTTCTCTTGAGTGATAAAGTAAATATGGAAAAAAATTGTATTTGAAGTACATGAACAAGTATTTATCATATTATTCACTGAGGTGTCATTTAGTTCAATAGTCTCAGAACATTTAGTAATCAGAAATTAAAATGTGGGGTTAATGGCCCCATAGTTGGACAGAATCTAGATTTCTCTCATATCCTCCAAAGTAGTATAGTTTTGAAGGATCTGACACCCACCCGTAGGCAGTTTTTAAGAGTAGAGACATAATCTACTAACCTTTTCTGCCCTGTAATGTAATGATGCTAGTTGGACATATTTCGGATTAGCTTTATCCCAATTTCTTTCCACAATAGTTAACGGTCATCTTTATGCTTTTATCGATTATTTGTTGTATTTTAGTTATGATGTGTGCTAGTGTTAGTCAAAATGTAAGCTTTTTAAGGGGATCTGGCATTATGGAGAAAACAAAAATACAACTTTGTATGCTTGACTCCTCTTTGTGCTTGCCTTTTAGAAATTAACTAATGTTAGCAAGCAGATAAACCCTTTTTTTCTCCTTGCATTTTCCCCCTGGCATATATTTTCTAGCCAATCTATGTTCTTTTTGATGAATAAAAATATCTTGTTCATACTTCCCTTGTTCCATGAACATATTTGGTAACAACCATGTAATGTATATGGGATGAATTTCAACATTGCTTTGGATTAACTCTTCGTTCTATCTCCTTCTTTGCGTGTTCGGGTGGGATGATGGAAACTGACTGATATATCTATAAAGTGCTTTTGCTAAAACTCTTCTCTTATGGATTACAATGCAATTACTTGTGTAGGACAGCCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAATGTAAGTCTATTACCTATCACATCAAAGTCTCTGAAGAAGACCCATTGATCTCTGAGTGTGTGTTGATATCAGAAACAAAGTGAACTAAGAGTCTCCGTAAATTTTTCCATCAAGCTGCAGCCATAATTTATTTGAGTCATTGCTTCATGTATTGTGTTGGTATATATATGCCTTCTATGAAGGTAAAACCTTGAAAGTTAAATAGTTTACTTATACTACTACTTGGAGATTGTTTGCAACAACTAGGAATATGTTGCAATGGGCCAAATAATAAAAGAACTTCTGTGTGCTCAAAAAGATGGGTAGGATGACCTACGAGTGGAAAAAGAGTAAATTGAGGATTGTGTATTTCTTGTTGTGATATGTTACATAGCTTGGTATGCTCCAGGAGCAGTAATTGTTTTCTTGATAAGCCAAATGCGAAGCTCAGGTTTTCTATATCTGAATATCTTTTAGATGAAGCAAAATTTGTGGTGAAATTTTTTATGGTGGTTACTTCTGGCCTGAATTTTCTTATTTAGCTCAGCTCTGCCAATCTAACAACTTTTCCTCTTTGCTTTTATTTAGTTTGACAAGTCATGCTAATTATTTTATGTGAATTTTGTTTAAAGGTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGC</genome_strand>
        <mrna_strand>CCGGAAATGGAGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E285221" ref_strand="+" ref_description="SGN-E285221 [cLER-20-P7]">
      <seq>cggaaatggagaaattcgtcgctctaaatgcttcaaatttgagctccggttcccttttaccaattgggttttcttcgccttgccgtaaatctgcactttcacttcaacgccggcgggtccacgttaccagggcttccgttgctctagaacagcaagctcaaactaaggtcgctgtcatcagagttggaacacgaggaagccccctagctcttgcccaagcttatgagactcgagaaaagctaatagcctcgtttcctgacctggctgaagagggagccattgagatagtaataataaaaaccacaggtgataagatattaagtcagcctcttgcagatattggtggaaaagggttgttcacaaaagaaatagacgaagccctcatcaatggcgatattgatattgctgtccactcaatgaaagatgtgcccacatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="7549" stop="9596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7849" g_stop="8047" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8048" i_stop="9058" i_length="1011">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9059" g_stop="9296" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="437" r_length="238" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E285221" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7849" e_stop="8047"/>
          <exon e_start="9059" e_stop="9296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAAATGGAGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAGGTACTGTCAATTATTTACCCAATCTATTTGTACAAAAATACCTAATGGGCTTTATCTCAGCTTAAAGTTACAGTCTTTCAACTGAAAATTCGGATGTAAAAAGATTGCCGCTTTTACCAATTAATTGCTGTTTAGTCTTAGGTTTTGATAGATGATTCAAGATTAAATAATTGATGCTTTATTCTTATGTTTTTCTCTTGAGTGATAAAGTAAATATGGAAAAAAATTGTATTTGAAGTACATGAACAAGTATTTATCATATTATTCACTGAGGTGTCATTTAGTTCAATAGTCTCAGAACATTTAGTAATCAGAAATTAAAATGTGGGGTTAATGGCCCCATAGTTGGACAGAATCTAGATTTCTCTCATATCCTCCAAAGTAGTATAGTTTTGAAGGATCTGACACCCACCCGTAGGCAGTTTTTAAGAGTAGAGACATAATCTACTAACCTTTTCTGCCCTGTAATGTAATGATGCTAGTTGGACATATTTCGGATTAGCTTTATCCCAATTTCTTTCCACAATAGTTAACGGTCATCTTTATGCTTTTATCGATTATTTGTTGTATTTTAGTTATGATGTGTGCTAGTGTTAGTCAAAATGTAAGCTTTTTAAGGGGATCTGGCATTATGGAGAAAACAAAAATACAACTTTGTATGCTTGACTCCTCTTTGTGCTTGCCTTTTAGAAATTAACTAATGTTAGCAAGCAGATAAACCCTTTTTTTCTCCTTGCATTTTCCCCCTGGCATATATTTTCTAGCCAATCTATGTTCTTTTTGATGAATAAAAATATCTTGTTCATACTTCCCTTGTTCCATGAACATATTTGGTAACAACCATGTAATGTATATGGGATGAATTTCAACATTGCTTTGGATTAACTCTTCGTTCTATCTCCTTCTTTGCGTGTTCGGGTGGGATGATGGAAACTGACTGATATATCTATAAAGTGCTTTTGCTAAAACTCTTCTCTTATGGATTACAATGCAATTACTTGTGTAGGACAGCCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATAT</genome_strand>
        <mrna_strand>CGGAAATGGAGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E303858" ref_strand="+" ref_description="SGN-E303858 [cLEX-4-E7]">
      <seq>ggaaatggagaaattcgtcgctctaaatgcttcaaatttgagctccggttcccttttaccaattgggttttcttcgccttgccgtaaatctgcactttcacttcaacgccggcgggtccacgttaccagggcttccgttgctctagaacagcaagctcaaactaaggtcgctgtcatcagagttggaacacgaggaagccccctagctcttgcccaagcttatgagactcgagaaaagctaatagcctcgtttcctgacctggctgaagagggagccattgagatagtaataataaaaaccacaggtgataagatattaagtcagcctcttgcagatattggtggaaaagggttgttcacaaaagaaatagacgaagccctcatcaatggcgatattgatattgctgtccactcaatgaaagatgtgcccacatattctgccagagaagactatcttaccgtgcaaccttccacgtgaagatgtgagggatgcattcatttctttaactgcaggttccctggctgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="7550" stop="9687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7850" g_stop="8047" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8048" i_stop="9058" i_length="1011">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9059" g_stop="9387" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="528" r_length="330" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E303858" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7850" e_stop="8047"/>
          <exon e_start="9059" e_stop="9387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATGGAGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAGGTACTGTCAATTATTTACCCAATCTATTTGTACAAAAATACCTAATGGGCTTTATCTCAGCTTAAAGTTACAGTCTTTCAACTGAAAATTCGGATGTAAAAAGATTGCCGCTTTTACCAATTAATTGCTGTTTAGTCTTAGGTTTTGATAGATGATTCAAGATTAAATAATTGATGCTTTATTCTTATGTTTTTCTCTTGAGTGATAAAGTAAATATGGAAAAAAATTGTATTTGAAGTACATGAACAAGTATTTATCATATTATTCACTGAGGTGTCATTTAGTTCAATAGTCTCAGAACATTTAGTAATCAGAAATTAAAATGTGGGGTTAATGGCCCCATAGTTGGACAGAATCTAGATTTCTCTCATATCCTCCAAAGTAGTATAGTTTTGAAGGATCTGACACCCACCCGTAGGCAGTTTTTAAGAGTAGAGACATAATCTACTAACCTTTTCTGCCCTGTAATGTAATGATGCTAGTTGGACATATTTCGGATTAGCTTTATCCCAATTTCTTTCCACAATAGTTAACGGTCATCTTTATGCTTTTATCGATTATTTGTTGTATTTTAGTTATGATGTGTGCTAGTGTTAGTCAAAATGTAAGCTTTTTAAGGGGATCTGGCATTATGGAGAAAACAAAAATACAACTTTGTATGCTTGACTCCTCTTTGTGCTTGCCTTTTAGAAATTAACTAATGTTAGCAAGCAGATAAACCCTTTTTTTCTCCTTGCATTTTCCCCCTGGCATATATTTTCTAGCCAATCTATGTTCTTTTTGATGAATAAAAATATCTTGTTCATACTTCCCTTGTTCCATGAACATATTTGGTAACAACCATGTAATGTATATGGGATGAATTTCAACATTGCTTTGGATTAACTCTTCGTTCTATCTCCTTCTTTGCGTGTTCGGGTGGGATGATGGAAACTGACTGATATATCTATAAAGTGCTTTTGCTAAAACTCTTCTCTTATGGATTACAATGCAATTACTTGTGTAGGACAGCCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATA-TCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAAC</genome_strand>
        <mrna_strand>GGAAATGGAGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATTCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E729232" ref_strand="+" ref_description="SGN-E729232 [LA20BF06]">
      <seq>ggaatggagaaattcgtcgctctaaatgcttcaaatttgagctccggttcccttttaccaattgggttttcttcgccttgccgtaaatctgcactttcacttcaacgccggcgggtccacgttaccagggcttccgttgctctagaacagcaagctcaaactaaggtcgctgtcatcagagttggaacacgaggaagccccctagctcttgcccaagcttatgagactcgagaaaagctaatagcctcgtttcctgacctggctgaagagggagccattgagatagtaataataaaaaccacaggtgataagatattaagtcagcctcttgcagatattggtggaaaagggttgttcacaaaagaaatagacgaagccctcatcaatggcgatattgatattgctgtccactcaatgaaagatgtgcccacatatctgccagagaagactatcttaccgtgcaaccttccacgtgaagatgtgagggatgcattcatttctttaactgcaggttccctggctgaacttccatcaggaagcacaattggtactgcttcactgaggagaaagtcccagattctccaccgctatccctcactcaatgtgttggagaatttcagaggcaatgtccagacaaggttgaagaaactgaatgagggagtagttcaagctacattattggcactggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="7551" stop="10462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7851" g_stop="8047" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8048" i_stop="9058" i_length="1011">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9059" g_stop="9464" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="603" r_length="406" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9465" i_stop="10075" i_length="611">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10076" g_stop="10162" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="690" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E729232" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7851" e_stop="8047"/>
          <exon e_start="9059" e_stop="9464"/>
          <exon e_start="10076" e_stop="10162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATGGAGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAGGTACTGTCAATTATTTACCCAATCTATTTGTACAAAAATACCTAATGGGCTTTATCTCAGCTTAAAGTTACAGTCTTTCAACTGAAAATTCGGATGTAAAAAGATTGCCGCTTTTACCAATTAATTGCTGTTTAGTCTTAGGTTTTGATAGATGATTCAAGATTAAATAATTGATGCTTTATTCTTATGTTTTTCTCTTGAGTGATAAAGTAAATATGGAAAAAAATTGTATTTGAAGTACATGAACAAGTATTTATCATATTATTCACTGAGGTGTCATTTAGTTCAATAGTCTCAGAACATTTAGTAATCAGAAATTAAAATGTGGGGTTAATGGCCCCATAGTTGGACAGAATCTAGATTTCTCTCATATCCTCCAAAGTAGTATAGTTTTGAAGGATCTGACACCCACCCGTAGGCAGTTTTTAAGAGTAGAGACATAATCTACTAACCTTTTCTGCCCTGTAATGTAATGATGCTAGTTGGACATATTTCGGATTAGCTTTATCCCAATTTCTTTCCACAATAGTTAACGGTCATCTTTATGCTTTTATCGATTATTTGTTGTATTTTAGTTATGATGTGTGCTAGTGTTAGTCAAAATGTAAGCTTTTTAAGGGGATCTGGCATTATGGAGAAAACAAAAATACAACTTTGTATGCTTGACTCCTCTTTGTGCTTGCCTTTTAGAAATTAACTAATGTTAGCAAGCAGATAAACCCTTTTTTTCTCCTTGCATTTTCCCCCTGGCATATATTTTCTAGCCAATCTATGTTCTTTTTGATGAATAAAAATATCTTGTTCATACTTCCCTTGTTCCATGAACATATTTGGTAACAACCATGTAATGTATATGGGATGAATTTCAACATTGCTTTGGATTAACTCTTCGTTCTATCTCCTTCTTTGCGTGTTCGGGTGGGATGATGGAAACTGACTGATATATCTATAAAGTGCTTTTGCTAAAACTCTTCTCTTATGGATTACAATGCAATTACTTGTGTAGGACAGCCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAATGTAAGTCTATTACCTATCACATCAAAGTCTCTGAAGAAGACCCATTGATCTCTGAGTGTGTGTTGATATCAGAAACAAAGTGAACTAAGAGTCTCCGTAAATTTTTCCATCAAGCTGCAGCCATAATTTATTTGAGTCATTGCTTCATGTATTGTGTTGGTATATATATGCCTTCTATGAAGGTAAAACCTTGAAAGTTAAATAGTTTACTTATACTACTACTTGGAGATTGTTTGCAACAACTAGGAATATGTTGCAATGGGCCAAATAATAAAAGAACTTCTGTGTGCTCAAAAAGATGGGTAGGATGACCTACGAGTGGAAAAAGAGTAAATTGAGGATTGTGTATTTCTTGTTGTGATATGTTACATAGCTTGGTATGCTCCAGGAGCAGTAATTGTTTTCTTGATAAGCCAAATGCGAAGCTCAGGTTTTCTATATCTGAATATCTTTTAGATGAAGCAAAATTTGTGGTGAAATTTTTTATGGTGGTTACTTCTGGCCTGAATTTTCTTATTTAGCTCAGCTCTGCCAATCTAACAACTTTTCCTCTTTGCTTTTATTTAGTTTGACAAGTCATGCTAATTATTTTATGTGAATTTTGTTTAAAGGTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCA</genome_strand>
        <mrna_strand>GGAATGGAGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E342782" ref_strand="+" ref_description="SGN-E342782 [cTOF-7-M20]">
      <seq>aatggagaaattcgtcgctctaaatgcttcaaatttgagctccggttcccttttacaattgggttttcttcgccttgccgtaaatctgcactttcacttcaacgccggcgggtccacgttaccagggcttccgttgctctagaacagcaagctcaaactaaggtcgctgtcatcagagttggaacacgaggaagccccctagctcttgcccaagcttatgagactcgagaaaagctaatagcctcgtttcctgacctggctgaagagggagccattgagatagtaataataaaaaccacaggtgataagatattaagtcagcctcttgcagatattggtggaaaagggttgttcacaaaagaaatagacgaagccctcatcaatggcgatattgatattgctgtccactcaatgaaagatgtgcccacatatctgccagagaagactatcttaccgtgcaaccttccacgtgaagatgtgagggatgcattcatttctttaactgcaggttccctggctgaacttccatcaggaagcacaattggtactgcttcactgaggagaaagtcccagattctccaccgctatccctcactcaatgtgttggagaatttcagaggcaatgtccagacaaggttgaagaaactgaatganggnagtagttcaagctacattattggcactggcagggctttaagcgtctgaatatgacagaaaaatgtatcatcgatcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="7553" stop="10507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7853" g_stop="8047" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8048" i_stop="9058" i_length="1011">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9059" g_stop="9464" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="600" r_length="406" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9465" i_stop="10075" i_length="611">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10076" g_stop="10207" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="735" r_length="135" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E342782" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7853" e_stop="8047"/>
          <exon e_start="9059" e_stop="9464"/>
          <exon e_start="10076" e_stop="10207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGAGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAGGTACTGTCAATTATTTACCCAATCTATTTGTACAAAAATACCTAATGGGCTTTATCTCAGCTTAAAGTTACAGTCTTTCAACTGAAAATTCGGATGTAAAAAGATTGCCGCTTTTACCAATTAATTGCTGTTTAGTCTTAGGTTTTGATAGATGATTCAAGATTAAATAATTGATGCTTTATTCTTATGTTTTTCTCTTGAGTGATAAAGTAAATATGGAAAAAAATTGTATTTGAAGTACATGAACAAGTATTTATCATATTATTCACTGAGGTGTCATTTAGTTCAATAGTCTCAGAACATTTAGTAATCAGAAATTAAAATGTGGGGTTAATGGCCCCATAGTTGGACAGAATCTAGATTTCTCTCATATCCTCCAAAGTAGTATAGTTTTGAAGGATCTGACACCCACCCGTAGGCAGTTTTTAAGAGTAGAGACATAATCTACTAACCTTTTCTGCCCTGTAATGTAATGATGCTAGTTGGACATATTTCGGATTAGCTTTATCCCAATTTCTTTCCACAATAGTTAACGGTCATCTTTATGCTTTTATCGATTATTTGTTGTATTTTAGTTATGATGTGTGCTAGTGTTAGTCAAAATGTAAGCTTTTTAAGGGGATCTGGCATTATGGAGAAAACAAAAATACAACTTTGTATGCTTGACTCCTCTTTGTGCTTGCCTTTTAGAAATTAACTAATGTTAGCAAGCAGATAAACCCTTTTTTTCTCCTTGCATTTTCCCCCTGGCATATATTTTCTAGCCAATCTATGTTCTTTTTGATGAATAAAAATATCTTGTTCATACTTCCCTTGTTCCATGAACATATTTGGTAACAACCATGTAATGTATATGGGATGAATTTCAACATTGCTTTGGATTAACTCTTCGTTCTATCTCCTTCTTTGCGTGTTCGGGTGGGATGATGGAAACTGACTGATATATCTATAAAGTGCTTTTGCTAAAACTCTTCTCTTATGGATTACAATGCAATTACTTGTGTAGGACAGCCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAATGTAAGTCTATTACCTATCACATCAAAGTCTCTGAAGAAGACCCATTGATCTCTGAGTGTGTGTTGATATCAGAAACAAAGTGAACTAAGAGTCTCCGTAAATTTTTCCATCAAGCTGCAGCCATAATTTATTTGAGTCATTGCTTCATGTATTGTGTTGGTATATATATGCCTTCTATGAAGGTAAAACCTTGAAAGTTAAATAGTTTACTTATACTACTACTTGGAGATTGTTTGCAACAACTAGGAATATGTTGCAATGGGCCAAATAATAAAAGAACTTCTGTGTGCTCAAAAAGATGGGTAGGATGACCTACGAGTGGAAAAAGAGTAAATTGAGGATTGTGTATTTCTTGTTGTGATATGTTACATAGCTTGGTATGCTCCAGGAGCAGTAATTGTTTTCTTGATAAGCCAAATGCGAAGCTCAGGTTTTCTATATCTGAATATCTTTTAGATGAAGCAAAATTTGTGGTGAAATTTTTTATGGTGGTTACTTCTGGCCTGAATTTTCTTATTTAGCTCAGCTCTGCCAATCTAACAACTTTTCCTCTTTGCTTTTATTTAGTTTGACAAGTCATGCTAATTATTTTATGTGAATTTTGTTTAAAGGTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGA-GGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGC-TTAAGCGTCTGAATATGACAG-AAAATGTATCATCGATCCTT</genome_strand>
        <mrna_strand>AATGGAGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTA-CAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGANGGNAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTTAAGCGTCTGAATATGACAGAAAAATGTATCATCGATCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E702948" ref_strand="+" ref_description="SGN-E702948 [FA20AE12]">
      <seq>gagaaattcgtcgctctaaatgcttcaaatttgagctccggttcccttttaccaattgggttttcttcgccttgccgtaaatctgcactttcacttcaacgccggcgggtccacgttaccagggcttccgttgctctagaacagcaagctcaaactaaggtcgctgtcatcagagttggaacacgaggaagccccctagctcttgcccaagcttatgagactcgagaaaagctaatagcctcgtttcctgacctggctgaagagggagccattgagatagtaataataaaaaccacaggtgataagatattaagtcagcctcttgcagatattggtggaaaagggttgttcacaaaagaaatagacgaagccctcatcaatggcgatattgatattgctgtccactcaatgaaagatgtgcccacatatctgccagagaagactatcttaccgtgcaaccttccacgtgaagaaactgaatgagggagtagttcaagctacattattggcactggcagggcttaagcgtctgaatatgacagaaaatgtatcatcgatcctttctatagaggatatgctaccagctgttgctcagggtgccattggtattgcctgcagaagtgatgacgagacaatggccaactacattgctgctttaaatcatgaagaaaccagattagcaatagtttgtgagagagcatttttgacgaccttggatgggtcttgtcgcaccccaattgctggctatgcctgtcgaggtgaagatggagattgtatttttaaaggattagttgcctctccagatggaacgcgagttattgaaacctctagaaagggaccttatacgtctgaagacatgatacggatgggtgaagatgctggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="7557" stop="11027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7857" g_stop="8047" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8048" i_stop="9058" i_length="1011">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9059" g_stop="9339" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="472" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9340" i_stop="10117" i_length="778">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10118" g_stop="10282" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="637" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10283" i_stop="10392" i_length="110">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.775" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10393" g_stop="10570" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="815" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10571" i_stop="10659" i_length="89">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10660" g_stop="10727" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="816" r_stop="883" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E702948" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>883</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7857" e_stop="8047"/>
          <exon e_start="9059" e_stop="9339"/>
          <exon e_start="10118" e_stop="10282"/>
          <exon e_start="10393" e_stop="10570"/>
          <exon e_start="10660" e_stop="10727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAGGTACTGTCAATTATTTACCCAATCTATTTGTACAAAAATACCTAATGGGCTTTATCTCAGCTTAAAGTTACAGTCTTTCAACTGAAAATTCGGATGTAAAAAGATTGCCGCTTTTACCAATTAATTGCTGTTTAGTCTTAGGTTTTGATAGATGATTCAAGATTAAATAATTGATGCTTTATTCTTATGTTTTTCTCTTGAGTGATAAAGTAAATATGGAAAAAAATTGTATTTGAAGTACATGAACAAGTATTTATCATATTATTCACTGAGGTGTCATTTAGTTCAATAGTCTCAGAACATTTAGTAATCAGAAATTAAAATGTGGGGTTAATGGCCCCATAGTTGGACAGAATCTAGATTTCTCTCATATCCTCCAAAGTAGTATAGTTTTGAAGGATCTGACACCCACCCGTAGGCAGTTTTTAAGAGTAGAGACATAATCTACTAACCTTTTCTGCCCTGTAATGTAATGATGCTAGTTGGACATATTTCGGATTAGCTTTATCCCAATTTCTTTCCACAATAGTTAACGGTCATCTTTATGCTTTTATCGATTATTTGTTGTATTTTAGTTATGATGTGTGCTAGTGTTAGTCAAAATGTAAGCTTTTTAAGGGGATCTGGCATTATGGAGAAAACAAAAATACAACTTTGTATGCTTGACTCCTCTTTGTGCTTGCCTTTTAGAAATTAACTAATGTTAGCAAGCAGATAAACCCTTTTTTTCTCCTTGCATTTTCCCCCTGGCATATATTTTCTAGCCAATCTATGTTCTTTTTGATGAATAAAAATATCTTGTTCATACTTCCCTTGTTCCATGAACATATTTGGTAACAACCATGTAATGTATATGGGATGAATTTCAACATTGCTTTGGATTAACTCTTCGTTCTATCTCCTTCTTTGCGTGTTCGGGTGGGATGATGGAAACTGACTGATATATCTATAAAGTGCTTTTGCTAAAACTCTTCTCTTATGGATTACAATGCAATTACTTGTGTAGGACAGCCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAATGTAAGTCTATTACCTATCACATCAAAGTCTCTGAAGAAGACCCATTGATCTCTGAGTGTGTGTTGATATCAGAAACAAAGTGAACTAAGAGTCTCCGTAAATTTTTCCATCAAGCTGCAGCCATAATTTATTTGAGTCATTGCTTCATGTATTGTGTTGGTATATATATGCCTTCTATGAAGGTAAAACCTTGAAAGTTAAATAGTTTACTTATACTACTACTTGGAGATTGTTTGCAACAACTAGGAATATGTTGCAATGGGCCAAATAATAAAAGAACTTCTGTGTGCTCAAAAAGATGGGTAGGATGACCTACGAGTGGAAAAAGAGTAAATTGAGGATTGTGTATTTCTTGTTGTGATATGTTACATAGCTTGGTATGCTCCAGGAGCAGTAATTGTTTTCTTGATAAGCCAAATGCGAAGCTCAGGTTTTCTATATCTGAATATCTTTTAGATGAAGCAAAATTTGTGGTGAAATTTTTTATGGTGGTTACTTCTGGCCTGAATTTTCTTATTTAGCTCAGCTCTGCCAATCTAACAACTTTTCCTCTTTGCTTTTATTTAGTTTGACAAGTCATGCTAATTATTTTATGTGAATTTTGTTTAAAGGTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATGGTATTTAGCACTCTTCTCTGTTATTACAAATACATTTCCTGCTCTACCATTGCTCATATCTCCTCTTTCGAGGGCTTTATTTCGCTCATATTTATCGGATGCAATTATAGGCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAGGTAAACGTTACTTCTTAGTTACAGAATTCTGAGGGATGTGTGAGTTACCTATTCTTTATGTTTATTTGATGTATAATCTTCAATTTCAGTTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGC</genome_strand>
        <mrna_strand>GAGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATG..............................................................................................................GCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAG.........................................................................................TTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E348215" ref_strand="+" ref_description="SGN-E348215 [cTOF-27-I11]">
      <seq>agaaattcgtcgctctaaatgcttcaaatttgagctccggttcccttttacaattgggttttcttcgccttgccgtaaatctgcactttcacttcaacgccggcgggtccacgttaccagggcttccgttgctctagaacagcaagctcaaactaaggtcgctgtcatcagagttggaacacgaggaagccccctagctcttgcccaagcttatgagactcgagaaaagctaatagcctcgtttcctgacctggctgaagagggagccattgagatagtaataataaaaaccacaggtgataagatattaagtcagcctcttgcagatattggtggaaaagggttgttcacaaaagaaatagacgaagccctcatcaatggcgatattgatattgctgtccactcaatgaaagatgtgcccacatatctgccagagaagactatcttaccgtgcaaccttccacgtgaagatgtgagggatgcattcatttctttaactgcaggttccctggctgaacttccatcaggaagcacaattggtactgcttcactgaggagaaagtcccagattctccaccgctatccctcactcaatgtgttggagaatttcagaggcaatgtccagacanggttgaagaaactgaatganggagtagttcaagctacattattggcactggcagggcttaagcgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="7558" stop="10475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7858" g_stop="8047" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8048" i_stop="9058" i_length="1011">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9059" g_stop="9464" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="595" r_length="406" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9465" i_stop="10075" i_length="611">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10076" g_stop="10175" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="695" r_length="100" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E348215" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7858" e_stop="8047"/>
          <exon e_start="9059" e_stop="9464"/>
          <exon e_start="10076" e_stop="10175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAGGTACTGTCAATTATTTACCCAATCTATTTGTACAAAAATACCTAATGGGCTTTATCTCAGCTTAAAGTTACAGTCTTTCAACTGAAAATTCGGATGTAAAAAGATTGCCGCTTTTACCAATTAATTGCTGTTTAGTCTTAGGTTTTGATAGATGATTCAAGATTAAATAATTGATGCTTTATTCTTATGTTTTTCTCTTGAGTGATAAAGTAAATATGGAAAAAAATTGTATTTGAAGTACATGAACAAGTATTTATCATATTATTCACTGAGGTGTCATTTAGTTCAATAGTCTCAGAACATTTAGTAATCAGAAATTAAAATGTGGGGTTAATGGCCCCATAGTTGGACAGAATCTAGATTTCTCTCATATCCTCCAAAGTAGTATAGTTTTGAAGGATCTGACACCCACCCGTAGGCAGTTTTTAAGAGTAGAGACATAATCTACTAACCTTTTCTGCCCTGTAATGTAATGATGCTAGTTGGACATATTTCGGATTAGCTTTATCCCAATTTCTTTCCACAATAGTTAACGGTCATCTTTATGCTTTTATCGATTATTTGTTGTATTTTAGTTATGATGTGTGCTAGTGTTAGTCAAAATGTAAGCTTTTTAAGGGGATCTGGCATTATGGAGAAAACAAAAATACAACTTTGTATGCTTGACTCCTCTTTGTGCTTGCCTTTTAGAAATTAACTAATGTTAGCAAGCAGATAAACCCTTTTTTTCTCCTTGCATTTTCCCCCTGGCATATATTTTCTAGCCAATCTATGTTCTTTTTGATGAATAAAAATATCTTGTTCATACTTCCCTTGTTCCATGAACATATTTGGTAACAACCATGTAATGTATATGGGATGAATTTCAACATTGCTTTGGATTAACTCTTCGTTCTATCTCCTTCTTTGCGTGTTCGGGTGGGATGATGGAAACTGACTGATATATCTATAAAGTGCTTTTGCTAAAACTCTTCTCTTATGGATTACAATGCAATTACTTGTGTAGGACAGCCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAATGTAAGTCTATTACCTATCACATCAAAGTCTCTGAAGAAGACCCATTGATCTCTGAGTGTGTGTTGATATCAGAAACAAAGTGAACTAAGAGTCTCCGTAAATTTTTCCATCAAGCTGCAGCCATAATTTATTTGAGTCATTGCTTCATGTATTGTGTTGGTATATATATGCCTTCTATGAAGGTAAAACCTTGAAAGTTAAATAGTTTACTTATACTACTACTTGGAGATTGTTTGCAACAACTAGGAATATGTTGCAATGGGCCAAATAATAAAAGAACTTCTGTGTGCTCAAAAAGATGGGTAGGATGACCTACGAGTGGAAAAAGAGTAAATTGAGGATTGTGTATTTCTTGTTGTGATATGTTACATAGCTTGGTATGCTCCAGGAGCAGTAATTGTTTTCTTGATAAGCCAAATGCGAAGCTCAGGTTTTCTATATCTGAATATCTTTTAGATGAAGCAAAATTTGTGGTGAAATTTTTTATGGTGGTTACTTCTGGCCTGAATTTTCTTATTTAGCTCAGCTCTGCCAATCTAACAACTTTTCCTCTTTGCTTTTATTTAGTTTGACAAGTCATGCTAATTATTTTATGTGAATTTTGTTTAAAGGTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTC</genome_strand>
        <mrna_strand>AGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTA-CAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGAGAATTTCAGAGGCAATGTCCAGACANGGTTGAAGAAACTGAATGANGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E373355" ref_strand="+" ref_description="SGN-E373355 [TUS-31-J15]">
      <seq>aaattcgtcgctctaaatgcttcaaatttgagctccggttcccttttaccaattgggttttcttcgccttgccgtaaatctgcactttcacttcaacgccggcgggtccacgttaccagggcttccgttgctctagaacagcaagctcaaactaaggtcgctgtcatcagagttggaacacgaggaagccccctagctcttgcccaagcttatgagactcgagaaaagctaatagcctcgtttcctgacctggctgaagagggagccattgagatagtaataataaaaaccacaggtgataagatattaagtcagcctcttgcagatattggtggaaaagggttgttcacaaaagaaatagacgaagccctcatcaatggcgatattgatattgctgtccactcaatgaaagatgtgcccacatatctgccagagaagactatcttaccgtgcaaccttccacgtgaagatgtgagggatgcattcatttctttaactgcaggttccctggctgaacttccatcaggaagcacaattggtactgcttcactgaggagaaagtcccagattctccaccgctatccctcactcaatgtgttggagaatttcagaggcaatgtccagacaaggttgaagacactgaatgagggagtagttcaagctacattattggcactggcagggcttaagcgtctgaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="7560" stop="10483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7860" g_stop="8047" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8048" i_stop="9058" i_length="1011">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9059" g_stop="9464" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="594" r_length="406" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9465" i_stop="10075" i_length="611">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10076" g_stop="10183" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="702" r_length="108" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E373355" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7860" e_stop="8047"/>
          <exon e_start="9059" e_stop="9464"/>
          <exon e_start="10076" e_stop="10183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAGGTACTGTCAATTATTTACCCAATCTATTTGTACAAAAATACCTAATGGGCTTTATCTCAGCTTAAAGTTACAGTCTTTCAACTGAAAATTCGGATGTAAAAAGATTGCCGCTTTTACCAATTAATTGCTGTTTAGTCTTAGGTTTTGATAGATGATTCAAGATTAAATAATTGATGCTTTATTCTTATGTTTTTCTCTTGAGTGATAAAGTAAATATGGAAAAAAATTGTATTTGAAGTACATGAACAAGTATTTATCATATTATTCACTGAGGTGTCATTTAGTTCAATAGTCTCAGAACATTTAGTAATCAGAAATTAAAATGTGGGGTTAATGGCCCCATAGTTGGACAGAATCTAGATTTCTCTCATATCCTCCAAAGTAGTATAGTTTTGAAGGATCTGACACCCACCCGTAGGCAGTTTTTAAGAGTAGAGACATAATCTACTAACCTTTTCTGCCCTGTAATGTAATGATGCTAGTTGGACATATTTCGGATTAGCTTTATCCCAATTTCTTTCCACAATAGTTAACGGTCATCTTTATGCTTTTATCGATTATTTGTTGTATTTTAGTTATGATGTGTGCTAGTGTTAGTCAAAATGTAAGCTTTTTAAGGGGATCTGGCATTATGGAGAAAACAAAAATACAACTTTGTATGCTTGACTCCTCTTTGTGCTTGCCTTTTAGAAATTAACTAATGTTAGCAAGCAGATAAACCCTTTTTTTCTCCTTGCATTTTCCCCCTGGCATATATTTTCTAGCCAATCTATGTTCTTTTTGATGAATAAAAATATCTTGTTCATACTTCCCTTGTTCCATGAACATATTTGGTAACAACCATGTAATGTATATGGGATGAATTTCAACATTGCTTTGGATTAACTCTTCGTTCTATCTCCTTCTTTGCGTGTTCGGGTGGGATGATGGAAACTGACTGATATATCTATAAAGTGCTTTTGCTAAAACTCTTCTCTTATGGATTACAATGCAATTACTTGTGTAGGACAGCCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAATGTAAGTCTATTACCTATCACATCAAAGTCTCTGAAGAAGACCCATTGATCTCTGAGTGTGTGTTGATATCAGAAACAAAGTGAACTAAGAGTCTCCGTAAATTTTTCCATCAAGCTGCAGCCATAATTTATTTGAGTCATTGCTTCATGTATTGTGTTGGTATATATATGCCTTCTATGAAGGTAAAACCTTGAAAGTTAAATAGTTTACTTATACTACTACTTGGAGATTGTTTGCAACAACTAGGAATATGTTGCAATGGGCCAAATAATAAAAGAACTTCTGTGTGCTCAAAAAGATGGGTAGGATGACCTACGAGTGGAAAAAGAGTAAATTGAGGATTGTGTATTTCTTGTTGTGATATGTTACATAGCTTGGTATGCTCCAGGAGCAGTAATTGTTTTCTTGATAAGCCAAATGCGAAGCTCAGGTTTTCTATATCTGAATATCTTTTAGATGAAGCAAAATTTGTGGTGAAATTTTTTATGGTGGTTACTTCTGGCCTGAATTTTCTTATTTAGCTCAGCTCTGCCAATCTAACAACTTTTCCTCTTTGCTTTTATTTAGTTTGACAAGTCATGCTAATTATTTTATGTGAATTTTGTTTAAAGGTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATG</genome_strand>
        <mrna_strand>AAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGACACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E373526" ref_strand="+" ref_description="SGN-E373526 [TUS-31-J14]">
      <seq>aaattcgtcgctctaaatgcttcaaatttgagctccggttcccttttaccaattgggttttcttcgccttgccgtaaatctgcactttcacttcaacgccggcgggtccacgttaccagggcttccgttgctctagaacagcaagctcaaactaaggtcgctgtcatcagagttggaacacgaggaagccccctagctcttgcccaagcttatgagactcgagaaaagctaatagcctcgtttcctgacctggctgaagagggagccattgagatagtaataataaaaaccacaggtgataagatattaagtcagcctcttgcagatattggtggaaaagggttgttcacaaaagaaatagacgaagccctcatcaatggcgatattgatattgctgtccactcaatgaaagatgtgcccacatatctgccagagaagactatcttaccgtgcaaccttccacgtgaagatgtgagggatgcattcatttctttaactgcaggttccctggctgaacttccatcaggaagcacaattggtactgcttcactgaggagaaagtcccagattctccaccgctatccctcactcaatgtgttggagaatttcagaggcaatgtccagacaaggttgaagaaactgaatgagggagtagttcaagctacattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="7560" stop="10451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7860" g_stop="8047" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8048" i_stop="9058" i_length="1011">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9059" g_stop="9464" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="594" r_length="406" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9465" i_stop="10075" i_length="611">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10076" g_stop="10151" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="670" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E373526" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7860" e_stop="8047"/>
          <exon e_start="9059" e_stop="9464"/>
          <exon e_start="10076" e_stop="10151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAGGTACTGTCAATTATTTACCCAATCTATTTGTACAAAAATACCTAATGGGCTTTATCTCAGCTTAAAGTTACAGTCTTTCAACTGAAAATTCGGATGTAAAAAGATTGCCGCTTTTACCAATTAATTGCTGTTTAGTCTTAGGTTTTGATAGATGATTCAAGATTAAATAATTGATGCTTTATTCTTATGTTTTTCTCTTGAGTGATAAAGTAAATATGGAAAAAAATTGTATTTGAAGTACATGAACAAGTATTTATCATATTATTCACTGAGGTGTCATTTAGTTCAATAGTCTCAGAACATTTAGTAATCAGAAATTAAAATGTGGGGTTAATGGCCCCATAGTTGGACAGAATCTAGATTTCTCTCATATCCTCCAAAGTAGTATAGTTTTGAAGGATCTGACACCCACCCGTAGGCAGTTTTTAAGAGTAGAGACATAATCTACTAACCTTTTCTGCCCTGTAATGTAATGATGCTAGTTGGACATATTTCGGATTAGCTTTATCCCAATTTCTTTCCACAATAGTTAACGGTCATCTTTATGCTTTTATCGATTATTTGTTGTATTTTAGTTATGATGTGTGCTAGTGTTAGTCAAAATGTAAGCTTTTTAAGGGGATCTGGCATTATGGAGAAAACAAAAATACAACTTTGTATGCTTGACTCCTCTTTGTGCTTGCCTTTTAGAAATTAACTAATGTTAGCAAGCAGATAAACCCTTTTTTTCTCCTTGCATTTTCCCCCTGGCATATATTTTCTAGCCAATCTATGTTCTTTTTGATGAATAAAAATATCTTGTTCATACTTCCCTTGTTCCATGAACATATTTGGTAACAACCATGTAATGTATATGGGATGAATTTCAACATTGCTTTGGATTAACTCTTCGTTCTATCTCCTTCTTTGCGTGTTCGGGTGGGATGATGGAAACTGACTGATATATCTATAAAGTGCTTTTGCTAAAACTCTTCTCTTATGGATTACAATGCAATTACTTGTGTAGGACAGCCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAATGTAAGTCTATTACCTATCACATCAAAGTCTCTGAAGAAGACCCATTGATCTCTGAGTGTGTGTTGATATCAGAAACAAAGTGAACTAAGAGTCTCCGTAAATTTTTCCATCAAGCTGCAGCCATAATTTATTTGAGTCATTGCTTCATGTATTGTGTTGGTATATATATGCCTTCTATGAAGGTAAAACCTTGAAAGTTAAATAGTTTACTTATACTACTACTTGGAGATTGTTTGCAACAACTAGGAATATGTTGCAATGGGCCAAATAATAAAAGAACTTCTGTGTGCTCAAAAAGATGGGTAGGATGACCTACGAGTGGAAAAAGAGTAAATTGAGGATTGTGTATTTCTTGTTGTGATATGTTACATAGCTTGGTATGCTCCAGGAGCAGTAATTGTTTTCTTGATAAGCCAAATGCGAAGCTCAGGTTTTCTATATCTGAATATCTTTTAGATGAAGCAAAATTTGTGGTGAAATTTTTTATGGTGGTTACTTCTGGCCTGAATTTTCTTATTTAGCTCAGCTCTGCCAATCTAACAACTTTTCCTCTTTGCTTTTATTTAGTTTGACAAGTCATGCTAATTATTTTATGTGAATTTTGTTTAAAGGTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTAT</genome_strand>
        <mrna_strand>AAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E254100" ref_strand="+" ref_description="SGN-E254100 [cLEG-34-N5]">
      <seq>aaattcgtcgctctaaatgcttcaaatttgagctccggttcccttttaccaattgggttttcttcgccttgccgtaaatctgcactttcacttcaacgccggcgggtccacgttaccagggcttccgttgctctagaacagcaagctcaaactaaggtcgctgtcatcagagttggaacacgaggaagccccctagctcttgcccaagcttatgagactcgagaaaagctaatagcctcgtttcctgacctggctgaagagggagccattgagatagtaataataaaaaccacaggtgataagatattaagtcagcctcttgcagatattggtggaaaagggttgttcacaaaagaaatagacgaagccctcatcaatggcgatattgatattgctgtccactcaatgaaagatgtgcccacatatctgccagagaagactatcttaccgtgcaaccttccacgtgaagatgtgagggatgcattcatttctttaactgcaggttccctggctgaacttccatcaggaagcacaattggtactgcttcactgaggagaaagtcccagattctccaccgctatccctcactcaatgtgttggagaatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="7560" stop="9766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7860" g_stop="8047" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8048" i_stop="9058" i_length="1011">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9059" g_stop="9464" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="594" r_length="406" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E254100" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7860" e_stop="8047"/>
          <exon e_start="9059" e_stop="9464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAGGTACTGTCAATTATTTACCCAATCTATTTGTACAAAAATACCTAATGGGCTTTATCTCAGCTTAAAGTTACAGTCTTTCAACTGAAAATTCGGATGTAAAAAGATTGCCGCTTTTACCAATTAATTGCTGTTTAGTCTTAGGTTTTGATAGATGATTCAAGATTAAATAATTGATGCTTTATTCTTATGTTTTTCTCTTGAGTGATAAAGTAAATATGGAAAAAAATTGTATTTGAAGTACATGAACAAGTATTTATCATATTATTCACTGAGGTGTCATTTAGTTCAATAGTCTCAGAACATTTAGTAATCAGAAATTAAAATGTGGGGTTAATGGCCCCATAGTTGGACAGAATCTAGATTTCTCTCATATCCTCCAAAGTAGTATAGTTTTGAAGGATCTGACACCCACCCGTAGGCAGTTTTTAAGAGTAGAGACATAATCTACTAACCTTTTCTGCCCTGTAATGTAATGATGCTAGTTGGACATATTTCGGATTAGCTTTATCCCAATTTCTTTCCACAATAGTTAACGGTCATCTTTATGCTTTTATCGATTATTTGTTGTATTTTAGTTATGATGTGTGCTAGTGTTAGTCAAAATGTAAGCTTTTTAAGGGGATCTGGCATTATGGAGAAAACAAAAATACAACTTTGTATGCTTGACTCCTCTTTGTGCTTGCCTTTTAGAAATTAACTAATGTTAGCAAGCAGATAAACCCTTTTTTTCTCCTTGCATTTTCCCCCTGGCATATATTTTCTAGCCAATCTATGTTCTTTTTGATGAATAAAAATATCTTGTTCATACTTCCCTTGTTCCATGAACATATTTGGTAACAACCATGTAATGTATATGGGATGAATTTCAACATTGCTTTGGATTAACTCTTCGTTCTATCTCCTTCTTTGCGTGTTCGGGTGGGATGATGGAAACTGACTGATATATCTATAAAGTGCTTTTGCTAAAACTCTTCTCTTATGGATTACAATGCAATTACTTGTGTAGGACAGCCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT</genome_strand>
        <mrna_strand>AAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E292049" ref_strand="+" ref_description="SGN-E292049 [cLET-1-A3]">
      <seq>aaattcgtcgctctaaatgcttcaaatctgagctccggttcccttttaccaattgggttttcttcgccttgccgtaaatctgcactttcacttcaacgccggcgggtccacgttaccagggcttccgttgctctagaacagcaagctcaaactaaggtcgctgtcatcagagttggaacacgaggaagccccctagctcttgcccaagcttatgagactcgagaaaagctaatagcctcgtttcctgacctggctgaagagggagccattgagatagtaataataaaaaccacaggtgataagatattaagtcagcctcttgcatatattgctggaaaagggttgttcacaaaagaaatagacgaagccctcatcaatggcgatattgatattgctgtccactcaatgaaagatgtgcccacatatgtgacagagaagactatcttaccgtgcaaccttccacgtgaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="7560" stop="9640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7860" g_stop="8047" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8048" i_stop="9058" i_length="1011">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9059" g_stop="9340" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="470" r_length="282" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E292049" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7860" e_stop="8047"/>
          <exon e_start="9059" e_stop="9340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAGGTACTGTCAATTATTTACCCAATCTATTTGTACAAAAATACCTAATGGGCTTTATCTCAGCTTAAAGTTACAGTCTTTCAACTGAAAATTCGGATGTAAAAAGATTGCCGCTTTTACCAATTAATTGCTGTTTAGTCTTAGGTTTTGATAGATGATTCAAGATTAAATAATTGATGCTTTATTCTTATGTTTTTCTCTTGAGTGATAAAGTAAATATGGAAAAAAATTGTATTTGAAGTACATGAACAAGTATTTATCATATTATTCACTGAGGTGTCATTTAGTTCAATAGTCTCAGAACATTTAGTAATCAGAAATTAAAATGTGGGGTTAATGGCCCCATAGTTGGACAGAATCTAGATTTCTCTCATATCCTCCAAAGTAGTATAGTTTTGAAGGATCTGACACCCACCCGTAGGCAGTTTTTAAGAGTAGAGACATAATCTACTAACCTTTTCTGCCCTGTAATGTAATGATGCTAGTTGGACATATTTCGGATTAGCTTTATCCCAATTTCTTTCCACAATAGTTAACGGTCATCTTTATGCTTTTATCGATTATTTGTTGTATTTTAGTTATGATGTGTGCTAGTGTTAGTCAAAATGTAAGCTTTTTAAGGGGATCTGGCATTATGGAGAAAACAAAAATACAACTTTGTATGCTTGACTCCTCTTTGTGCTTGCCTTTTAGAAATTAACTAATGTTAGCAAGCAGATAAACCCTTTTTTTCTCCTTGCATTTTCCCCCTGGCATATATTTTCTAGCCAATCTATGTTCTTTTTGATGAATAAAAATATCTTGTTCATACTTCCCTTGTTCCATGAACATATTTGGTAACAACCATGTAATGTATATGGGATGAATTTCAACATTGCTTTGGATTAACTCTTCGTTCTATCTCCTTCTTTGCGTGTTCGGGTGGGATGATGGAAACTGACTGATATATCTATAAAGTGCTTTTGCTAAAACTCTTCTCTTATGGATTACAATGCAATTACTTGTGTAGGACAGCCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGA</genome_strand>
        <mrna_strand>AAATTCGTCGCTCTAAATGCTTCAAATCTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCATATATTGCTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATGTGACAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E705574" ref_strand="+" ref_description="SGN-E705574 [FA27CB09]">
      <seq>gtcgctctaaatgcttcaaatttgagctccggttcccttttaccaattgggttttcttcgccttgccgtaaatctgcactttcacttcaacgccggcgggtccacgttaccagggcttccgttgctctagaacagcaagctcaaactaaggtcgctgtcatcagagttggaacacgaggaagccccctagctcttgcccaagcttatgagactcgagaaaagctaatagcctcgtttcctgacctggctgaagagggagccattgagatagtaataataaaaaccacaggtgataagatattaagtcagcctcttgcagatattggtggaaaagggttgttcacaaaagaaatagacgaagccctcatcaatggcgatattgatattgctgtccactcaatgaaagatgtgcccacatatctgccagagaagactatcttaccgtgcaaccttccacgtgaagatgtgagggatgcattcatttctttaactgcaggttccctggctgaacttccatcaggaagcacaattggtactgcttcactgaggagaaagtcccagattctccaccgctatccctcactcaatgtgttggagaatttcagaggcaatgtccagacaaggttgaagaaactgaatgagggagtagttcaagctacattattggcactggcagggcttaagcgtctgaatatgacagaaaatgtatcatcgatcctttctatagaggatatgctaccagctgttgctcagggtgccattggtattgcctgcagaagtgatgacgagacaatggccaactacattgctgctttaaatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="7566" stop="10719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7866" g_stop="8047" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8048" i_stop="9058" i_length="1011">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9059" g_stop="9464" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="588" r_length="406" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9465" i_stop="10075" i_length="611">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10076" g_stop="10282" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="795" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10283" i_stop="10392" i_length="110">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.775" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10393" g_stop="10419" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="796" r_stop="822" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E705574" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7866" e_stop="8047"/>
          <exon e_start="9059" e_stop="9464"/>
          <exon e_start="10076" e_stop="10282"/>
          <exon e_start="10393" e_stop="10419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAGGTACTGTCAATTATTTACCCAATCTATTTGTACAAAAATACCTAATGGGCTTTATCTCAGCTTAAAGTTACAGTCTTTCAACTGAAAATTCGGATGTAAAAAGATTGCCGCTTTTACCAATTAATTGCTGTTTAGTCTTAGGTTTTGATAGATGATTCAAGATTAAATAATTGATGCTTTATTCTTATGTTTTTCTCTTGAGTGATAAAGTAAATATGGAAAAAAATTGTATTTGAAGTACATGAACAAGTATTTATCATATTATTCACTGAGGTGTCATTTAGTTCAATAGTCTCAGAACATTTAGTAATCAGAAATTAAAATGTGGGGTTAATGGCCCCATAGTTGGACAGAATCTAGATTTCTCTCATATCCTCCAAAGTAGTATAGTTTTGAAGGATCTGACACCCACCCGTAGGCAGTTTTTAAGAGTAGAGACATAATCTACTAACCTTTTCTGCCCTGTAATGTAATGATGCTAGTTGGACATATTTCGGATTAGCTTTATCCCAATTTCTTTCCACAATAGTTAACGGTCATCTTTATGCTTTTATCGATTATTTGTTGTATTTTAGTTATGATGTGTGCTAGTGTTAGTCAAAATGTAAGCTTTTTAAGGGGATCTGGCATTATGGAGAAAACAAAAATACAACTTTGTATGCTTGACTCCTCTTTGTGCTTGCCTTTTAGAAATTAACTAATGTTAGCAAGCAGATAAACCCTTTTTTTCTCCTTGCATTTTCCCCCTGGCATATATTTTCTAGCCAATCTATGTTCTTTTTGATGAATAAAAATATCTTGTTCATACTTCCCTTGTTCCATGAACATATTTGGTAACAACCATGTAATGTATATGGGATGAATTTCAACATTGCTTTGGATTAACTCTTCGTTCTATCTCCTTCTTTGCGTGTTCGGGTGGGATGATGGAAACTGACTGATATATCTATAAAGTGCTTTTGCTAAAACTCTTCTCTTATGGATTACAATGCAATTACTTGTGTAGGACAGCCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAATGTAAGTCTATTACCTATCACATCAAAGTCTCTGAAGAAGACCCATTGATCTCTGAGTGTGTGTTGATATCAGAAACAAAGTGAACTAAGAGTCTCCGTAAATTTTTCCATCAAGCTGCAGCCATAATTTATTTGAGTCATTGCTTCATGTATTGTGTTGGTATATATATGCCTTCTATGAAGGTAAAACCTTGAAAGTTAAATAGTTTACTTATACTACTACTTGGAGATTGTTTGCAACAACTAGGAATATGTTGCAATGGGCCAAATAATAAAAGAACTTCTGTGTGCTCAAAAAGATGGGTAGGATGACCTACGAGTGGAAAAAGAGTAAATTGAGGATTGTGTATTTCTTGTTGTGATATGTTACATAGCTTGGTATGCTCCAGGAGCAGTAATTGTTTTCTTGATAAGCCAAATGCGAAGCTCAGGTTTTCTATATCTGAATATCTTTTAGATGAAGCAAAATTTGTGGTGAAATTTTTTATGGTGGTTACTTCTGGCCTGAATTTTCTTATTTAGCTCAGCTCTGCCAATCTAACAACTTTTCCTCTTTGCTTTTATTTAGTTTGACAAGTCATGCTAATTATTTTATGTGAATTTTGTTTAAAGGTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATGGTATTTAGCACTCTTCTCTGTTATTACAAATACATTTCCTGCTCTACCATTGCTCATATCTCCTCTTTCGAGGGCTTTATTTCGCTCATATTTATCGGATGCAATTATAGGCCAACTACATTGCTGCTTTAAATCAT</genome_strand>
        <mrna_strand>GTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATG..............................................................................................................GCCAACTACATTGCTGCTTTAAATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E311809" ref_strand="+" ref_description="SGN-E311809 [cLEZ-9-L21]">
      <seq>tcgagaaaagctaatagcctcgtttcctgacctggctgaagagggagccattgagatagtaataataaaaaccacaggtgataagatattaagtcagcctcttgcagatattggtggaaaagggttgttcacaaaagaaatagacgaagccctcatcaatggcgatattgatattgctgtccactcaatgaaagatgtgcccacatatctgccagagaagactatcttaccgtgcaaccttccacgtgaagatgtgagggatgcattcatttctttaactgcaggttccctggctgaacttccatcaggaagcacaattggtactgcttcactgaggagaaagtcccagattctccaccgctatccctcactcaatgtgttggagaatttcagaggcaatgtccagacaaggttgaagaaactgaatgagggagtagttcaagctacattattggcactggcagggcttaagcgtctgaatatgacagaaaatgtatcatcgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="8789" stop="10504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9089" g_stop="9464" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9465" i_stop="10075" i_length="611">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10076" g_stop="10204" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="505" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E311809" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9089" e_stop="9464"/>
          <exon e_start="10076" e_stop="10204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAATGTAAGTCTATTACCTATCACATCAAAGTCTCTGAAGAAGACCCATTGATCTCTGAGTGTGTGTTGATATCAGAAACAAAGTGAACTAAGAGTCTCCGTAAATTTTTCCATCAAGCTGCAGCCATAATTTATTTGAGTCATTGCTTCATGTATTGTGTTGGTATATATATGCCTTCTATGAAGGTAAAACCTTGAAAGTTAAATAGTTTACTTATACTACTACTTGGAGATTGTTTGCAACAACTAGGAATATGTTGCAATGGGCCAAATAATAAAAGAACTTCTGTGTGCTCAAAAAGATGGGTAGGATGACCTACGAGTGGAAAAAGAGTAAATTGAGGATTGTGTATTTCTTGTTGTGATATGTTACATAGCTTGGTATGCTCCAGGAGCAGTAATTGTTTTCTTGATAAGCCAAATGCGAAGCTCAGGTTTTCTATATCTGAATATCTTTTAGATGAAGCAAAATTTGTGGTGAAATTTTTTATGGTGGTTACTTCTGGCCTGAATTTTCTTATTTAGCTCAGCTCTGCCAATCTAACAACTTTTCCTCTTTGCTTTTATTTAGTTTGACAAGTCATGCTAATTATTTTATGTGAATTTTGTTTAAAGGTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATC</genome_strand>
        <mrna_strand>TCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E254793" ref_strand="+" ref_description="SGN-E254793 [cLEG-33-E4]">
      <seq>aaaagctaatagcctcgtttcctgacctggctgaagagggagccattgagatagtaataataaaaaccacaggtgataagatattaagtcagcctcttgcagatattggtggaaaagggttgttcacaaaagaaatagacgaagccctcatcaatggcgatattgatattgctgtccactcaatgaaagatgtgcccacatatctgccagagaagactatcttaccgtgcaaccttccacgtgaagatgtgagggatgcattcatttctttaactgcaggttccctggctgaacttccatcaggaagcacaattggtactgcttcactgaggagaaagtcccagattctccaccgctatccctcactcaatgtgttggagaatttcagaggcaatgtccagacaaggttgaagaaactgaatgagggagtagttcaagctacattattggcactggcagggcttaagcgtctgaatatgacagaaaatgtatcatcgatcctttctatagaggatatgctaccagctgttgctcanggtgccattggtattgcctgcagaagtgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="8794" stop="10572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9094" g_stop="9464" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9465" i_stop="10075" i_length="611">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10076" g_stop="10272" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="568" r_length="197" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E254793" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9094" e_stop="9464"/>
          <exon e_start="10076" e_stop="10272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAATGTAAGTCTATTACCTATCACATCAAAGTCTCTGAAGAAGACCCATTGATCTCTGAGTGTGTGTTGATATCAGAAACAAAGTGAACTAAGAGTCTCCGTAAATTTTTCCATCAAGCTGCAGCCATAATTTATTTGAGTCATTGCTTCATGTATTGTGTTGGTATATATATGCCTTCTATGAAGGTAAAACCTTGAAAGTTAAATAGTTTACTTATACTACTACTTGGAGATTGTTTGCAACAACTAGGAATATGTTGCAATGGGCCAAATAATAAAAGAACTTCTGTGTGCTCAAAAAGATGGGTAGGATGACCTACGAGTGGAAAAAGAGTAAATTGAGGATTGTGTATTTCTTGTTGTGATATGTTACATAGCTTGGTATGCTCCAGGAGCAGTAATTGTTTTCTTGATAAGCCAAATGCGAAGCTCAGGTTTTCTATATCTGAATATCTTTTAGATGAAGCAAAATTTGTGGTGAAATTTTTTATGGTGGTTACTTCTGGCCTGAATTTTCTTATTTAGCTCAGCTCTGCCAATCTAACAACTTTTCCTCTTTGCTTTTATTTAGTTTGACAAGTCATGCTAATTATTTTATGTGAATTTTGTTTAAAGGTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGA</genome_strand>
        <mrna_strand>AAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCANGGTGCCATTGGTATTGCCTGCAGAAGTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E343391" ref_strand="+" ref_description="SGN-E343391 [cTOF-19-G22]">
      <seq>cctggctgaagagggagccattgagatagtaataataaaaaccacaggtgataagatattaagtcagcctcttgcagatattggtggaaaagggttgttcacaaaagaaatagacgaagccctcatcaatggcgatattgatattgctgtccactcaatgaaagatgtgcccacatatctgccagagaagactatcttaccgtgcaaccttccacgtgaagatgtgagggatgcattcatttctttaactgcaggttccctggctgaacttccatcaggaagcacaattggtactgcttcactgaggagaaagtcccagattctccaccgctatccctcactcaatgtgttggagaatttcagaggcaatgtccagacaaggttgaagaaactgaatgagggagtagttcaagctacattattggcactggcagggcttaagcgtctgaatatgacagaaaatgtatcatcgatcctttctatagaggatatgctaccagctgttgctcagggtgccattggtattgcctgcagaagtgatgacgagacaatggccaactacattgctgctttaaatcatgaagaaaccagattagcaatagtttgtgagagagcatttttgacgaccttggatgggntcttgtcgcaccccaattgctggctatgcctgtcgaggtgaagaatggagattgtatttttaaagggattagttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="8819" stop="10851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9119" g_stop="9464" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="346" r_length="346" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9465" i_stop="10075" i_length="611">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10076" g_stop="10282" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="553" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10283" i_stop="10392" i_length="110">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.775" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10393" g_stop="10551" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="715" r_length="162" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E343391" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9119" e_stop="9464"/>
          <exon e_start="10076" e_stop="10282"/>
          <exon e_start="10393" e_stop="10551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAATGTAAGTCTATTACCTATCACATCAAAGTCTCTGAAGAAGACCCATTGATCTCTGAGTGTGTGTTGATATCAGAAACAAAGTGAACTAAGAGTCTCCGTAAATTTTTCCATCAAGCTGCAGCCATAATTTATTTGAGTCATTGCTTCATGTATTGTGTTGGTATATATATGCCTTCTATGAAGGTAAAACCTTGAAAGTTAAATAGTTTACTTATACTACTACTTGGAGATTGTTTGCAACAACTAGGAATATGTTGCAATGGGCCAAATAATAAAAGAACTTCTGTGTGCTCAAAAAGATGGGTAGGATGACCTACGAGTGGAAAAAGAGTAAATTGAGGATTGTGTATTTCTTGTTGTGATATGTTACATAGCTTGGTATGCTCCAGGAGCAGTAATTGTTTTCTTGATAAGCCAAATGCGAAGCTCAGGTTTTCTATATCTGAATATCTTTTAGATGAAGCAAAATTTGTGGTGAAATTTTTTATGGTGGTTACTTCTGGCCTGAATTTTCTTATTTAGCTCAGCTCTGCCAATCTAACAACTTTTCCTCTTTGCTTTTATTTAGTTTGACAAGTCATGCTAATTATTTTATGTGAATTTTGTTTAAAGGTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATGGTATTTAGCACTCTTCTCTGTTATTACAAATACATTTCCTGCTCTACCATTGCTCATATCTCCTCTTTCGAGGGCTTTATTTCGCTCATATTTATCGGATGCAATTATAGGCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGG-TCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAG-ATGGAGATTGTATTTTTAAA-GGATTAGTTGCC</genome_strand>
        <mrna_strand>CCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATG..............................................................................................................GCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGNTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGAATGGAGATTGTATTTTTAAAGGGATTAGTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E707506" ref_strand="+" ref_description="SGN-E707506 [FA33AH01]">
      <seq>cattaaaggttaagtcagcctcttgcagatattggtggaaaacggttgttcacaaaagaaatagacgaagccctcatcaatggcgatattgatattgctgtccactcaatgaaagatgtgcccacatatctgccagagaagactatcttaccgtgcaaccttccacgtgaagatgtgagggatgcattcatttctttaactgcaggttccctggctgaacttccatcaggaagcacaattggtactgcttcactgaggagaaagtcccagattctccaccgctatccctcactcaatgtgttggagaatttcagaggcaatgtccagacaaggttgaagaaactgaatgagggagtagttcaagctacattattggcactggcagggcttaagcgtctgaatatgacagaaaatgtatcatcgatcctttctatagaggatatgctaccagctgttgctcagggtgccattggtattgcctgcagaagtgatgacgagacaatggccaactacattgctgctttaaatcatgaagaaaccagattagcaatagtttgtgagagagcatttttgacgaccttggatgggtcttgtcgcaccccaattgctggctatgcctgtcgaggtgaagatggagattgtatttttaaaggattagttgcctctccagatggaacgcgagttattgaaacctctagaaagggaccttatacgtctgaagacatgatacggatgggtgaagatgctggccaggaactactttcgaaagcaggtccaggattttttggcaactgagtaaagcttatgctcttatggtcgacctctgcctatgaaaaatgcagagatgtatcgaataaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="8870" stop="11136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9168" g_stop="9464" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9465" i_stop="10075" i_length="611">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10076" g_stop="10282" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="504" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10283" i_stop="10392" i_length="110">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.775" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10393" g_stop="10570" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="682" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10571" i_stop="10659" i_length="89">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10660" g_stop="10836" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="859" r_length="177" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E707506" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>859</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9168" e_stop="9464"/>
          <exon e_start="10076" e_stop="10282"/>
          <exon e_start="10393" e_stop="10570"/>
          <exon e_start="10660" e_stop="10836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAATGTAAGTCTATTACCTATCACATCAAAGTCTCTGAAGAAGACCCATTGATCTCTGAGTGTGTGTTGATATCAGAAACAAAGTGAACTAAGAGTCTCCGTAAATTTTTCCATCAAGCTGCAGCCATAATTTATTTGAGTCATTGCTTCATGTATTGTGTTGGTATATATATGCCTTCTATGAAGGTAAAACCTTGAAAGTTAAATAGTTTACTTATACTACTACTTGGAGATTGTTTGCAACAACTAGGAATATGTTGCAATGGGCCAAATAATAAAAGAACTTCTGTGTGCTCAAAAAGATGGGTAGGATGACCTACGAGTGGAAAAAGAGTAAATTGAGGATTGTGTATTTCTTGTTGTGATATGTTACATAGCTTGGTATGCTCCAGGAGCAGTAATTGTTTTCTTGATAAGCCAAATGCGAAGCTCAGGTTTTCTATATCTGAATATCTTTTAGATGAAGCAAAATTTGTGGTGAAATTTTTTATGGTGGTTACTTCTGGCCTGAATTTTCTTATTTAGCTCAGCTCTGCCAATCTAACAACTTTTCCTCTTTGCTTTTATTTAGTTTGACAAGTCATGCTAATTATTTTATGTGAATTTTGTTTAAAGGTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATGGTATTTAGCACTCTTCTCTGTTATTACAAATACATTTCCTGCTCTACCATTGCTCATATCTCCTCTTTCGAGGGCTTTATTTCGCTCATATTTATCGGATGCAATTATAGGCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAGGTAAACGTTACTTCTTAGTTACAGAATTCTGAGGGATGTGTGAGTTACCTATTCTTTATGTTTATTTGATGTATAATCTTCAATTTCAGTTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACA</genome_strand>
        <mrna_strand>CATTAAAGGTTAAGTCAGCCTCTTGCAGATATTGGTGGAAAACGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATG..............................................................................................................GCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAG.........................................................................................TTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E707597" ref_strand="+" ref_description="SGN-E707597 [FA33BG12]">
      <seq>catttgatattaagtcagcctcttgcagatattggtggaaaagggttgttcacaaaagaaatagacgaagccctcatcaatggcgatattgatattgctgtccactcaatgaaagatgtgcccacatatctgccagagaagactatcttaccgtgcaaccttccacgtgaagatgtgagggatgcattcatttctttaactgcaggttccctggctgaacttccatcaggaagcacaattggtactgcttcactgaggagaaagtcccagattctccaccgctatccctcactcaatgtgttggagaatttcagaggcaatgtccagacaaggttgaagaaactgaatgagggagtagttcaagctacattattggcactggcagggcttaagcgtctgaatatgacagaaaatgtatcatcgatcctttctatagaggatatgctaccagctgttgctcagggtgccattggtattgcctgcagaagtgatgacgagacaatggccaactacattgctgctttaaatcatgaagaaaccagattagcaatagtttgtgagagagcatttttgacgaccttggatgggtcttgtcgcaccccaattgctggctatgcctgtcgaggtgaagatggagattgtatttttaaaggattagttgcctctccagatggaacgcgagttattgaaacctctagaaagggaccttatacgtctgaagacatgatacggatgggtgaagatgctggccaggaactactttcgaaagcaggtccaggattttttggcaactgagtaaagcttatgctcttatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="8869" stop="11094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9168" g_stop="9464" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9465" i_stop="10075" i_length="611">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10076" g_stop="10282" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="504" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10283" i_stop="10392" i_length="110">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.775" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10393" g_stop="10570" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="682" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10571" i_stop="10659" i_length="89">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10660" g_stop="10794" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="817" r_length="135" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E707597" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9168" e_stop="9464"/>
          <exon e_start="10076" e_stop="10282"/>
          <exon e_start="10393" e_stop="10570"/>
          <exon e_start="10660" e_stop="10794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAATGTAAGTCTATTACCTATCACATCAAAGTCTCTGAAGAAGACCCATTGATCTCTGAGTGTGTGTTGATATCAGAAACAAAGTGAACTAAGAGTCTCCGTAAATTTTTCCATCAAGCTGCAGCCATAATTTATTTGAGTCATTGCTTCATGTATTGTGTTGGTATATATATGCCTTCTATGAAGGTAAAACCTTGAAAGTTAAATAGTTTACTTATACTACTACTTGGAGATTGTTTGCAACAACTAGGAATATGTTGCAATGGGCCAAATAATAAAAGAACTTCTGTGTGCTCAAAAAGATGGGTAGGATGACCTACGAGTGGAAAAAGAGTAAATTGAGGATTGTGTATTTCTTGTTGTGATATGTTACATAGCTTGGTATGCTCCAGGAGCAGTAATTGTTTTCTTGATAAGCCAAATGCGAAGCTCAGGTTTTCTATATCTGAATATCTTTTAGATGAAGCAAAATTTGTGGTGAAATTTTTTATGGTGGTTACTTCTGGCCTGAATTTTCTTATTTAGCTCAGCTCTGCCAATCTAACAACTTTTCCTCTTTGCTTTTATTTAGTTTGACAAGTCATGCTAATTATTTTATGTGAATTTTGTTTAAAGGTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATGGTATTTAGCACTCTTCTCTGTTATTACAAATACATTTCCTGCTCTACCATTGCTCATATCTCCTCTTTCGAGGGCTTTATTTCGCTCATATTTATCGGATGCAATTATAGGCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAGGTAAACGTTACTTCTTAGTTACAGAATTCTGAGGGATGTGTGAGTTACCTATTCTTTATGTTTATTTGATGTATAATCTTCAATTTCAGTTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGT</genome_strand>
        <mrna_strand>CATTTGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATG..............................................................................................................GCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAG.........................................................................................TTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E700521" ref_strand="+" ref_description="SGN-E700521 [FA13BE02]">
      <seq>cgaagccctcatcaatggcgatattgatattgctgtccactcaatgaaagatgtgcccacatatctgccagagaagactatcttaccgtgcaaccttccacgtgaagatgtgagggatgcattcatttctttaactgcaggttccctggctgaacttccatcaggaagcacaattggtactgcttcactgaggagaaagtcccagattctccaccgctatccctcactcaatgtgttggagaatttcagaggcaatgtccagacaaggttgaagaaactgaatgagggagtagttcaagctacattattggcactggcagggcttaagcgtctgaatatgacagaaaatgtatcatcgatcctttctatagaggatatgctaccagctgttgctcagggtgccattggtattgcctgcagaagtgatgacgagacaatggccaactacattgctgctttaaatcatgaagaaaccagattagcaatagtttgtgagagagcatttttgacgaccttggatgggtcttgtcgcaccccaattgctggctatgcctgtcgaggtgaagatggagattgtatttttaaaggattagttgcctctccagatggaacgcgagttattgaaacctctagaaagggaccttatacgtctgaagacatgatacggatgggtgaagatgctggccaggaactactttcgaaagcaggtccaggattttttggcaactgagtaaagcttatgctcttatggtcgacctctgcctatgaaaaatgcagagatgtatcgaataacagggatagagatcggaattttatatttcacccctactataggattatgagtctacttatccttgtaactgtatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="8933" stop="11210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9233" g_stop="9464" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9465" i_stop="10075" i_length="611">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10076" g_stop="10282" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="439" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10283" i_stop="10392" i_length="110">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.775" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10393" g_stop="10570" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="617" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10571" i_stop="10659" i_length="89">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10660" g_stop="10910" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="868" r_length="251" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E700521" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>868</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9233" e_stop="9464"/>
          <exon e_start="10076" e_stop="10282"/>
          <exon e_start="10393" e_stop="10570"/>
          <exon e_start="10660" e_stop="10910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAATGTAAGTCTATTACCTATCACATCAAAGTCTCTGAAGAAGACCCATTGATCTCTGAGTGTGTGTTGATATCAGAAACAAAGTGAACTAAGAGTCTCCGTAAATTTTTCCATCAAGCTGCAGCCATAATTTATTTGAGTCATTGCTTCATGTATTGTGTTGGTATATATATGCCTTCTATGAAGGTAAAACCTTGAAAGTTAAATAGTTTACTTATACTACTACTTGGAGATTGTTTGCAACAACTAGGAATATGTTGCAATGGGCCAAATAATAAAAGAACTTCTGTGTGCTCAAAAAGATGGGTAGGATGACCTACGAGTGGAAAAAGAGTAAATTGAGGATTGTGTATTTCTTGTTGTGATATGTTACATAGCTTGGTATGCTCCAGGAGCAGTAATTGTTTTCTTGATAAGCCAAATGCGAAGCTCAGGTTTTCTATATCTGAATATCTTTTAGATGAAGCAAAATTTGTGGTGAAATTTTTTATGGTGGTTACTTCTGGCCTGAATTTTCTTATTTAGCTCAGCTCTGCCAATCTAACAACTTTTCCTCTTTGCTTTTATTTAGTTTGACAAGTCATGCTAATTATTTTATGTGAATTTTGTTTAAAGGTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATGGTATTTAGCACTCTTCTCTGTTATTACAAATACATTTCCTGCTCTACCATTGCTCATATCTCCTCTTTCGAGGGCTTTATTTCGCTCATATTTATCGGATGCAATTATAGGCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAGGTAAACGTTACTTCTTAGTTACAGAATTCTGAGGGATGTGTGAGTTACCTATTCTTTATGTTTATTTGATGTATAATCTTCAATTTCAGTTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCG</genome_strand>
        <mrna_strand>CGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATG..............................................................................................................GCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAG.........................................................................................TTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E342054" ref_strand="+" ref_description="SGN-E342054 [cTOF-10-L9]">
      <seq>attgatattgctgtccactcaatgaaagatgtgcccacatatctgccagagaagactatcttaccgtgcaaccttccacgtgaagatgtgagggatgcattcatttctttaactgcaggttccctggctgaacttccatcaggaagcacaattggtactgcttcactgaggagaaagtcccagattctccaccgctatccctcactcaatgtgttggagaatttcagaggcaatgtccagacaaggttgaagaaactgaatgagggagtagttcaagctacattattggcactggcagggcttaagcgtctgaatatgacagaaaatgtatcatcgatcctttctatagaggatatgctaccagctgttgctcagggtgccattggtattgcctgcagaagtgatgacgagacaatggccaactacattgctgctttaaatcatgaagaaacctctagaaagggaccttatacgtctgaagacatgatacggatgggtgaagatgctggccaggaactactttcgaaagcaggtccaggattttttggcaactgagtaaagcttatgctcttatggtcgacctctgcctatgaaaaatgcanagatgtatcgaataacagggatagagatcgggaatctatatttcacccctactataggattatgagtctacttatccttgntactgtatcggcaatagaattgaatactttgtatgttagtgtagcattttcacttcaatttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="8955" stop="11264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9255" g_stop="9464" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9465" i_stop="10075" i_length="611">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10076" g_stop="10282" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="417" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10283" i_stop="10392" i_length="110">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.775" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10393" g_stop="10418" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="443" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10419" i_stop="10659" i_length="241">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10660" g_stop="10964" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="746" r_length="303" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E342054" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9255" e_stop="9464"/>
          <exon e_start="10076" e_stop="10282"/>
          <exon e_start="10393" e_stop="10418"/>
          <exon e_start="10660" e_stop="10964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAATGTAAGTCTATTACCTATCACATCAAAGTCTCTGAAGAAGACCCATTGATCTCTGAGTGTGTGTTGATATCAGAAACAAAGTGAACTAAGAGTCTCCGTAAATTTTTCCATCAAGCTGCAGCCATAATTTATTTGAGTCATTGCTTCATGTATTGTGTTGGTATATATATGCCTTCTATGAAGGTAAAACCTTGAAAGTTAAATAGTTTACTTATACTACTACTTGGAGATTGTTTGCAACAACTAGGAATATGTTGCAATGGGCCAAATAATAAAAGAACTTCTGTGTGCTCAAAAAGATGGGTAGGATGACCTACGAGTGGAAAAAGAGTAAATTGAGGATTGTGTATTTCTTGTTGTGATATGTTACATAGCTTGGTATGCTCCAGGAGCAGTAATTGTTTTCTTGATAAGCCAAATGCGAAGCTCAGGTTTTCTATATCTGAATATCTTTTAGATGAAGCAAAATTTGTGGTGAAATTTTTTATGGTGGTTACTTCTGGCCTGAATTTTCTTATTTAGCTCAGCTCTGCCAATCTAACAACTTTTCCTCTTTGCTTTTATTTAGTTTGACAAGTCATGCTAATTATTTTATGTGAATTTTGTTTAAAGGTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATGGTATTTAGCACTCTTCTCTGTTATTACAAATACATTTCCTGCTCTACCATTGCTCATATCTCCTCTTTCGAGGGCTTTATTTCGCTCATATTTATCGGATGCAATTATAGGCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAGGTAAACGTTACTTCTTAGTTACAGAATTCTGAGGGATGTGTGAGTTACCTATTCTTTATGTTTATTTGATGTATAATCTTCAATTTCAGTTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGG</genome_strand>
        <mrna_strand>ATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATG..............................................................................................................GCCAACTACATTGCTGCTTTAAATCA.................................................................................................................................................................................................................................................TGA-AGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCANAGATGTATCGAATAACAGGGATAGAGATCGGGAATCTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGNTACTGTATCGGCAATAGAA-TTGAATACTTTGTATGTTAGTGTAGCATTTTCACTTCAATTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E342053" ref_strand="+" ref_description="SGN-E342053 [cTOF-10-L7]">
      <seq>attgatattgctgtccactcaatgaaagatgtgcccacatatctgccagagaagactatcttaccgtgcaaccttccacgtgaagatgtgagggatgcattcatttctttaactgcaggttccctggctgaacttccatcaggaagcacaattggtactgcttcactgaggagaaagtcccagattctccaccgctatccctcactcaatgtgttggagaatttcagaggcaatgtccagacaaggttgaagaaactgaatgagggagtagttcaagctacattattggcactggcagggcttaagcgtctgaatatgacagaaaatgtatcatcgatcctttctatagaggatatgctaccagctgttgctcagggtgccattggtattgcctgcagaagtgatgacgagacaatggccaactacattgctgctttaaatcatgaagaaacctctagaaagggaccttatacgtctgaagacatgatacggatgggtgaagatgctggccaggaactactttcgaaagcaggtccaggattttttggcaactgagtaaagcttatgctcttatggtcgacctctgcctatgaaaaatgcagagatgtatcgaataacagggatagagatcggaattttatatttcacccctactataggattatgagtctacttatccttgtaactgtatcggcaatagaatttgatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="8955" stop="11228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9255" g_stop="9464" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9465" i_stop="10075" i_length="611">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10076" g_stop="10282" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="417" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10283" i_stop="10392" i_length="110">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.775" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10393" g_stop="10418" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="443" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10419" i_stop="10659" i_length="241">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10660" g_stop="10923" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="706" r_length="263" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E342053" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9255" e_stop="9464"/>
          <exon e_start="10076" e_stop="10282"/>
          <exon e_start="10393" e_stop="10418"/>
          <exon e_start="10660" e_stop="10923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAATGTAAGTCTATTACCTATCACATCAAAGTCTCTGAAGAAGACCCATTGATCTCTGAGTGTGTGTTGATATCAGAAACAAAGTGAACTAAGAGTCTCCGTAAATTTTTCCATCAAGCTGCAGCCATAATTTATTTGAGTCATTGCTTCATGTATTGTGTTGGTATATATATGCCTTCTATGAAGGTAAAACCTTGAAAGTTAAATAGTTTACTTATACTACTACTTGGAGATTGTTTGCAACAACTAGGAATATGTTGCAATGGGCCAAATAATAAAAGAACTTCTGTGTGCTCAAAAAGATGGGTAGGATGACCTACGAGTGGAAAAAGAGTAAATTGAGGATTGTGTATTTCTTGTTGTGATATGTTACATAGCTTGGTATGCTCCAGGAGCAGTAATTGTTTTCTTGATAAGCCAAATGCGAAGCTCAGGTTTTCTATATCTGAATATCTTTTAGATGAAGCAAAATTTGTGGTGAAATTTTTTATGGTGGTTACTTCTGGCCTGAATTTTCTTATTTAGCTCAGCTCTGCCAATCTAACAACTTTTCCTCTTTGCTTTTATTTAGTTTGACAAGTCATGCTAATTATTTTATGTGAATTTTGTTTAAAGGTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATGGTATTTAGCACTCTTCTCTGTTATTACAAATACATTTCCTGCTCTACCATTGCTCATATCTCCTCTTTCGAGGGCTTTATTTCGCTCATATTTATCGGATGCAATTATAGGCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAGGTAAACGTTACTTCTTAGTTACAGAATTCTGAGGGATGTGTGAGTTACCTATTCTTTATGTTTATTTGATGTATAATCTTCAATTTCAGTTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTG</genome_strand>
        <mrna_strand>ATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATG..............................................................................................................GCCAACTACATTGCTGCTTTAAATCA.................................................................................................................................................................................................................................................TGA-AGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E711641" ref_strand="+" ref_description="SGN-E711641 [FB02CC06]">
      <seq>cccctgacaaggttgaagaaactgaatgagggagtagttcaccctacattattggcactggcagggcttaagcgtctgaatatgacagaaaatgtatcatcgatcctttctatagaggatatgctaccagctgttgctcagggtgccattggtattgcctgcagaagtgatgacgagacaatggccaactacattgctgctttaaatcatgaagaaaccagattagcaatagtttgtgagagagcatttttgacgaccttggatgggtcttgtcgcaccccaattgctggctatgcctgtcgaggtgaagatggagattgtatttttaaaggattagttgcctctccagatggaacgcgagttattgaaacctctagaaagggaccttatacgtctgaagacatgatacggatgggtgaagatgctggccaggaactactttcgaaagcaggtccaggattttttggcaactgagtaaagcttatgctcttatggtcgacctctgcctatgaaaaatgcagagatgtatcgaataacagggatagagatcggaattttatatttcacccctactataggattatgagtctacttatccttgtaactgtatcggcaatagaatttgaatactttgtatgttagtgtagcatttccacttcnnnaanaanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaannttctcggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="9802" stop="11257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10100" g_stop="10282" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10283" i_stop="10392" i_length="110">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.775" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10393" g_stop="10570" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="361" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10571" i_stop="10659" i_length="89">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10660" g_stop="10958" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="660" r_length="299" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="669" polyA_stop="703"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E711641" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10100" e_stop="10282"/>
          <exon e_start="10393" e_stop="10570"/>
          <exon e_start="10660" e_stop="10958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATGGTATTTAGCACTCTTCTCTGTTATTACAAATACATTTCCTGCTCTACCATTGCTCATATCTCCTCTTTCGAGGGCTTTATTTCGCTCATATTTATCGGATGCAATTATAGGCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAGGTAAACGTTACTTCTTAGTTACAGAATTCTGAGGGATGTGTGAGTTACCTATTCTTTATGTTTATTTGATGTATAATCTTCAATTTCAGTTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCA</genome_strand>
        <mrna_strand>CCCCTGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCACCCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATG..............................................................................................................GCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAG.........................................................................................TTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E343465" ref_strand="+" ref_description="SGN-E343465 [cTOF-19-A23]">
      <seq>gagggagtagttcaagctacattattggcactggcagggcttaagcgtctgaatatgacagaaaatgtatcatcgatcctttctatagaggatatgctaccagctgttgctcagggtgccattggtattgcctgcagaagtgatgacgagacaatggccaactacattgctgctttaaatcatgaagaaaccagattagcaatagtttgtgagagagcatttttgacgaccttggatgggtcttgtcgcaccccaattgctggctatgcctgtcgaggtgaagatggagattgtatttttaaaggattagttgcctctccagatggaacgcgagttattgaaacctctagaaagggaccttatacgtctgaagacatgatacggatgggtgaagatgctggccaggaactactttcgaaagcaggtccaggattttttggcaactgagtaaagcttatgctcttatggtcgacctctgcctatgaaaaatgcagagatgtatcgaataacagggatagagatcggaattttatatttcacccctactataggattatgagtctacttatccttgtaactgtatcggcaatagaatttgaatactttgtatgtttagtgtagcatttccacttcatttgggagtgtatccgaagaatggntgaatgtttgcagatttgtagaaaaanttgtactggcggatttgggattgtttttaatcactgtgagtaatttgtgcaactgttgtaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="9827" stop="11371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10127" g_stop="10282" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10283" i_stop="10392" i_length="110">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.775" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10393" g_stop="10570" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="334" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10571" i_stop="10659" i_length="89">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10660" g_stop="11071" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="750" r_length="416" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E343465" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10127" e_stop="10282"/>
          <exon e_start="10393" e_stop="10570"/>
          <exon e_start="10660" e_stop="11071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATGGTATTTAGCACTCTTCTCTGTTATTACAAATACATTTCCTGCTCTACCATTGCTCATATCTCCTCTTTCGAGGGCTTTATTTCGCTCATATTTATCGGATGCAATTATAGGCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAGGTAAACGTTACTTCTTAGTTACAGAATTCTGAGGGATGTGTGAGTTACCTATTCTTTATGTTTATTTGATGTATAATCTTCAATTTCAGTTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATG-TTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGG-TGAATGTTTGCAGATTTGTAG-AAAAGTTGTACTGGCGGATTT-GGATTGTTTTTAATCACTGTGAGTAATTTGTGCAACTGTTGTAAGCT</genome_strand>
        <mrna_strand>GAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATG..............................................................................................................GCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAG.........................................................................................TTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTTAGTGTAGCATTTCCACTTCATTTGGGAGTGTATCCGAAGAATGGNTGAATGTTTGCAGATTTGTAGAAAAANTTGTACTGGCGGATTTGGGATTGTTTTTAATCACTGTGAGTAATTTGTGCAACTGTTGTAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E373525" ref_strand="-" ref_description="SGN-E373525 [TUS-31-J14]">
      <seq>agttcaagctacattattggcactggcagggcttaagcgtctgaatatgacagaaaatgtatcatcgatcctttctatagaggatatgctaccagctgttgctcagggtgccattggtattgcctgcagaagtgatgacgagacaatggccaactacattgctgctttaaatcatgaagaaaccagattagcaatagtttgtgagagagcatttttgacgaccttggatgggtcttgtcgcaccccaattgctggctatgcctgtcgaggtgaagatggagattgtatttttaaaggattagttgcctctccagatggaacgcgagttattgaaacctctagaaagggaccttatacgtctgaagacatgatacggatgggtgaagatgctggccaggaactactttcgaaagcaggtccaggattttttggcaactgagtaaagcttatgctcttatggtcgacctctgcctatgaaaaatgcagagatgtatcgaataacagggatagagatcggaattttatatttcacccctactataggattatgagtctacttatccttgtaactgtatcggcaatagaatttgaatactttgtatgttagtgtagcatttccacttcaatttggagtgtatccgaggaatggtgaatgtttgcagatttgtagaaaagttgtactggcggatttggattgtttttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="9835" stop="86440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10135" g_stop="10282" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10283" i_stop="10392" i_length="110">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.775" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10393" g_stop="10570" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="326" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10571" i_stop="10659" i_length="89">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10660" g_stop="11044" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="711" r_length="385" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E373525" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373525" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="10135" e_stop="10282"/>
          <exon e_start="10393" e_stop="10570"/>
          <exon e_start="10660" e_stop="11044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATGGTATTTAGCACTCTTCTCTGTTATTACAAATACATTTCCTGCTCTACCATTGCTCATATCTCCTCTTTCGAGGGCTTTATTTCGCTCATATTTATCGGATGCAATTATAGGCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAGGTAAACGTTACTTCTTAGTTACAGAATTCTGAGGGATGTGTGAGTTACCTATTCTTTATGTTTATTTGATGTATAATCTTCAATTTCAGTTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAAGTTGTACTGGCGGATTTGGATTGTTTTTAATCACTGT</genome_strand>
        <mrna_strand>AGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATG..............................................................................................................GCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAG.........................................................................................TTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAAGTTGTACTGGCGGATTTGGATTGTTTTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E373354" ref_strand="-" ref_description="SGN-E373354 [TUS-31-J15]">
      <seq>ttattggcactggcagggcttaagcgtctgaatatgacagaaaatgtatcatcgatcctttctatagaggatatgctaccagctgttgctcagggtgccattggtattgcctgcagaagtgatgacgagacaatggccaactacattgctgctttaaatcatgaagaaaccagattagcaatagtttgtgagagagcatttttgacgaccttggatgggtcttgtcgcaccccaattgctggctatgcctgtcgaggtgaagatggagattgtatttttaaaggattagttgcctctccagatggaacgcgagttattgaaacctctagaaagggaccttatacgtctgaagacatgatacggatgggtgaagatgctggccaggaactactttcgaaagcaggtccaggattttttggcaactgagtaaagcttatgctcttatggtcgacctctgcctatgaaaaatgcagagatgtatcgaataacagggatagagatcggaattttatatttcacccctactataggattatgagtctacttatccttgtaactgtatcggcaatagaatttgaatactttgtatgttagtgtagcatttccacttcaatttggagtgtatccgaggaatggtgaatgtttgcagatttgtagaaaagttgtactggcggatttggattgtttttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="9848" stop="11337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10148" g_stop="10282" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10283" i_stop="10392" i_length="110">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.775" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10393" g_stop="10570" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="313" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10571" i_stop="10659" i_length="89">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10660" g_stop="11043" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="697" r_length="384" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E373354" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373354" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="10148" e_stop="10282"/>
          <exon e_start="10393" e_stop="10570"/>
          <exon e_start="10660" e_stop="11043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATGGTATTTAGCACTCTTCTCTGTTATTACAAATACATTTCCTGCTCTACCATTGCTCATATCTCCTCTTTCGAGGGCTTTATTTCGCTCATATTTATCGGATGCAATTATAGGCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAGGTAAACGTTACTTCTTAGTTACAGAATTCTGAGGGATGTGTGAGTTACCTATTCTTTATGTTTATTTGATGTATAATCTTCAATTTCAGTTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAAGTTGTACTGGCGGATTTGGATTGTTTTTAATCACTG</genome_strand>
        <mrna_strand>TTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATG..............................................................................................................GCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAG.........................................................................................TTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAAGTTGTACTGGCGGATTTGGATTGTTTTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E217416" ref_strand="-" ref_description="SGN-E217416 [cLEL-21-K13]">
      <seq>atcatgaagaaaccagattagcaatagtttgtgagagagcatttttgacgaccttggatgggtcttgtcgcaccccaattgctggctatgcctgtcgaggtgaagatggagattgtatttttaaaggattagttgcctctccagatggaacgcgagttattgaaacctctagaaagggaccttatacgtctgaagacatgatacggatgggtgaagatgctggccaggaactactttcgaaagcaggtccaggattttttggcaactgagtaaagcttatgctcttatggtcgacctctgcctatgaaaaatgcagagatgtatcgaataacagggatagagatcggaattttatatttcacccctactataggattatgagtctacttatccttgtaactgtatcggcaatagaatttgaatactttgtatgttagtgtagcatttccacttcaatttggagtgtatccgaggaatggtgaatgtttgcagatttgtagaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="10115" stop="11307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10415" g_stop="10570" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10571" i_stop="10659" i_length="89">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10660" g_stop="11007" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="504" r_length="348" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="505" polyA_stop="521"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E217416" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217416" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="10415" e_stop="10570"/>
          <exon e_start="10660" e_stop="11007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAGGTAAACGTTACTTCTTAGTTACAGAATTCTGAGGGATGTGTGAGTTACCTATTCTTTATGTTTATTTGATGTATAATCTTCAATTTCAGTTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAA</genome_strand>
        <mrna_strand>ATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAG.........................................................................................TTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E292050" ref_strand="-" ref_description="SGN-E292050 [cLET-1-A3]">
      <seq>gagagcatttttgacgaccttggatgggtcttgtcgcaccccaattgctggatatgcctgtgtaggtaaagatgaagattgtatttttaaaggattagttgcctctccagatggaacgtgagttatttacccctctagaaagggaccttatacgtctgaagacatcatgcggatgggtcaagatcctggccaggaacttactttcgaaagcaggtccaggattttttggcaactgagtaaagcttatgctcttatggtcgacctctgcctatgaaaaatgcagagatgtatcgaataacagggatagagatcggaattttatatttcaccccaactataggattatgagtctacttatccttgtaactgtatcggcaatagaatttgaatactttgtatgttagtgtagcatttccacttctatttggagtgtatccgaggaatggtgaatgtttgcagatttgtagaaaagttgtactggcggatttggattgtttttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="10149" stop="86440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10449" g_stop="10570" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10571" i_stop="10659" i_length="89">
            <donor d_prob="0.898" d_score="0.96"/>
            <acceptor a_prob="0.984" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10660" g_stop="11044" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="508" r_length="386" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E292050" ref_strand="-">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292050" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="10449" e_stop="10570"/>
          <exon e_start="10660" e_stop="11044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAGGTAAACGTTACTTCTTAGTTACAGAATTCTGAGGGATGTGTGAGTTACCTATTCTTTATGTTTATTTGATGTATAATCTTCAATTTCAGTTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAAC-TACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAAGTTGTACTGGCGGATTTGGATTGTTTTTAATCACTGT</genome_strand>
        <mrna_strand>GAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGATATGCCTGTGTAGGTAAAGATGAAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGTGAG.........................................................................................TTATTTACCCCTCTAGAAAGGGACCTTATACGTCTGAAGACATCATGCGGATGGGTCAAGATCCTGGCCAGGAACTTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCAACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCTATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAAGTTGTACTGGCGGATTTGGATTGTTTTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E342165" ref_strand="+" ref_description="SGN-E342165 [cTOF-10-J11]">
      <seq>gcaccccaattgctggctatgcctgtcgaggtgaagatggagattgtatttttaaaggattagttgcctctccagatggaacgcgagttattgaaacctctagaaagggaccttatacgtctgaagacatgatacggatgggtgaagatgctggccaggaactactttcgaaagcaggtccaggattttttggcaactgagtaaagcttatgctcttatggtcgacctctgcctatgaaaaatgcagagatgtatcgaataacagggatagagatcggaattttatatttcacccctactataggattatgagtctacttatccttgtaactgtatcggcaatagaatttgaatactttgtatgttagtgtagcatttccacttcaatttggagtgtatccgaggaatggtgaatgtttgcagatttgtagaaaagttgtactggcggatttggattgtttttaatcactgtgagtaatttgtgcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="10184" stop="11359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10484" g_stop="10570" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10571" i_stop="10659" i_length="89">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10660" g_stop="11068" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="496" r_length="409" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E342165" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10484" e_stop="10570"/>
          <exon e_start="10660" e_stop="11068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAGGTAAACGTTACTTCTTAGTTACAGAATTCTGAGGGATGTGTGAGTTACCTATTCTTTATGTTTATTTGATGTATAATCTTCAATTTCAGTTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAAGTTGTACTGGCGGATTTGGATTGTTTTTAATCACTGTGAGTAATTTGTGCAACTGTTGTAA</genome_strand>
        <mrna_strand>GCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAG.........................................................................................TTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAAGTTGTACTGGCGGATTTGGATTGTTTTTAATCACTGTGAGTAATTTGTGCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E217327" ref_strand="-" ref_description="SGN-E217327 [cLEL-21-K15]">
      <seq>aagggaccttatacgtctgaagacatgatacggatgggtgaagatgctggccaggaactactttcgaaagcaggtccaggattttttggcaactgagtaaagcttatgctcttatggtcgacctctgcctatgaaaaatgcagagatgtatcgaataacagggatagagatcggaattttatatttcacccctactataggattatgagtctacttatccttgtaactgtatcggcaatagaatttgaatactttgtatgttagtgtagcatttccacttcaatttggagtgtatccgaggaatggtgaatgtttgcagatttgtagaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="10377" stop="11307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10677" g_stop="11007" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="332" polyA_stop="348"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E217327" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217327" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="10677" e_stop="11007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAA</genome_strand>
        <mrna_strand>AAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E215981" ref_strand="-" ref_description="SGN-E215981 [cLEL-13-F23]">
      <seq>cggatgggtgaaaatgctggccaggaactactttcgaaagcaggtccaggattttttggcaactgagtaaagcttatgctcttatggtcgacctctgcctatgaaaaatgcagagatgtatcgaataacagggatagagatcggaattttatatttcacccctactataggattatgagtctacttatccttgtaactgtatcggcaatagaatttgaatactttgtatgttagtgtagcatttccgcttcaatttggagtgtatccgaggaatggtgaatgtttgcagatttgtagaaaaaaagaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="10407" stop="11307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10707" g_stop="11007" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="302" polyA_stop="319"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E215981" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215981" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="10707" e_stop="11007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAA</genome_strand>
        <mrna_strand>CGGATGGGTGAAAATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCGCTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E229840" ref_strand="-" ref_description="SGN-E229840 [cLEL-33-L23]">
      <seq>atgctggccaggaactactttcgaaagcaggtccaggattttttggcaactgagtaaagcttatgctcttatggtcgacctctgcctatgaaaaatgcagagatgtatcgaataacagggatagagatcggaattttatatttcacccctactataggattatgagtctacttatccttgtaactgtatcggcaatagaatttgaatactttgtatgttagtgtagcatttccacttcaatttggagtgtatccgaggaatggtgaatgtttgcagatttgtagaaaagttgtactggcggatttggattgtttttaatcactgtgagtaatttgtgcaactgttgtaagctaacgaaagagtatttcatcgttggcttaatttatgcaaggggtttggtccaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="10420" stop="11424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10720" g_stop="11123" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="405" polyA_stop="422"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E229840" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229840" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="10720" e_stop="11123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAAGTTGTACTGGCGGATTTGGATTGTTTTTAATCACTGTGAGTAATTTGTGCAACTGTTGTAAGCTAACGAAAGAGTATTTCATCGTTGGCTTAATTTATGCAAGGGGTTTGGTCCAA</genome_strand>
        <mrna_strand>ATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAAGTTGTACTGGCGGATTTGGATTGTTTTTAATCACTGTGAGTAATTTGTGCAACTGTTGTAAGCTAACGAAAGAGTATTTCATCGTTGGCTTAATTTATGCAAGGGGTTTGGTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E224869" ref_strand="+" ref_description="SGN-E224869 [cLEL-27-C9]">
      <seq>ttttttttttttttttttacgggccaaaccccttgcataatttatgccaacgatgaaatactctttcgttagcttacaacagttgcacaaattactcacagtgattaaaaacaatccaaatccgccagtacaacttttctacaaatctgcaaacattcaccattcctcggatacactccaaattgaagtggaaatgctacactaacatacaaagtattcaaattctattgccgatacagttacaaggataagtagactcataatcctatagtaggggtgaaatataaaattccgatctctatccctgttattcgatacatctctgcatttttcataggcagaggttcgaccataagagcataagcttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="11421" stop="10474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11421" g_stop="11416" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="22" r_length="6" r_score="0.833"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11415" i_stop="11120" i_length="296">
            <donor d_prob="0.356" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11119" g_stop="10774" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="369" r_length="347" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="16" polyA_stop="1"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E224869" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11421" e_stop="11416"/>
          <exon e_start="11119" e_stop="10774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAGGTATTAGTTCGGTCCTTATCGTGATTGTCCAACATGAAAGTAAAACAACTAATATGTTTCTGAACAAAGGTTCTATGATTGGTCTGAATGCTGAAGCATCCTTAGGAGGTGGAAATGGGGTTGGTTAATTCATGAATTTTTCTTTTACCGAATTTCACTCCAAGAGTTGAAGGGAGAGTTAGTTCATCAAGGGTCAACTTGATACTCTTTCTCAAAGATCTAATAGGAGGGAACCGTCTTATGAATAGTTGCGATACAAAAAATAAAGCCAATTATAAACGAAATATTCCATTTGGACCAAACCCCTTGCATAAATTAAGCCAACGATGAAATACTCTTTCGTTAGCTTACAACAGTTGCACAAATTACTCACAGTGATTAAAAACAATCCAAATCCGCCAGTACAACTTTTCTACAAATCTGCAAACATTCACCATTCCTCGGATACACTCCAAATTGAAGTGGAAATGCTACACTAACATACAAAGTATTCAAATTCTATTGCCGATACAGTTACAAGGATAAGTAGACTCATAATCCTATAGTAGGGGTGAAATATAAAATTCCGATCTCTATCCCTGTTATTCGATACATCTCTGCATTTTTCATAGGCAGAGG-TCGACCATAAGAGCATAAGCTTTA</genome_strand>
        <mrna_strand>TTACGG........................................................................................................................................................................................................................................................................................................GCCAAACCCCTTGCATAATTTATGCCAACGATGAAATACTCTTTCGTTAGCTTACAACAGTTGCACAAATTACTCACAGTGATTAAAAACAATCCAAATCCGCCAGTACAACTTTTCTACAAATCTGCAAACATTCACCATTCCTCGGATACACTCCAAATTGAAGTGGAAATGCTACACTAACATACAAAGTATTCAAATTCTATTGCCGATACAGTTACAAGGATAAGTAGACTCATAATCCTATAGTAGGGGTGAAATATAAAATTCCGATCTCTATCCCTGTTATTCGATACATCTCTGCATTTTTCATAGGCAGAGGTTCGACCATAAGAGCATAAGCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E230340" ref_strand="-" ref_description="SGN-E230340 [cLEL-33-L23]">
      <seq>cctctgcctatgaaaaaatgcagagatgtatcgaataacagggatagagatcggaattttatatttcacccctactataggattatgagtctacttatccttgtaactgtatcggcaatagaatttgaatactttgtatgttagtgtagcatttccacttcaatttggagtgtatccgaggaatggtgaatgtttgcagatttgtagaaaagttgtactggcggatttggattgtttttaatcactgtgagtaatttgtgcaactgttgtaagctaacgaaagagtatttcatcgttggcttaatttatgcaaggggtttggtccaacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="10498" stop="11423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10798" g_stop="11123" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="329" polyA_stop="345"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E230340" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230340" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="10798" e_stop="11123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTGCCTATGAAAAA-TGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAAGTTGTACTGGCGGATTTGGATTGTTTTTAATCACTGTGAGTAATTTGTGCAACTGTTGTAAGCTAACGAAAGAGTATTTCATCGTTGGCTTAATTTATGCAAGGGGTTTGGTCCAA</genome_strand>
        <mrna_strand>CCTCTGCCTATGAAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAAGTTGTACTGGCGGATTTGGATTGTTTTTAATCACTGTGAGTAATTTGTGCAACTGTTGTAAGCTAACGAAAGAGTATTTCATCGTTGGCTTAATTTATGCAAGGGGTTTGGTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E224369" ref_strand="-" ref_description="SGN-E224369 [cLEL-27-C9]">
      <seq>gcagagatgtatcgaataacagggatagagatcggaatttttatatttcaccccctactataggattatgagtctacttatccttgtaactgtatcggcaatagaatttgaatactttgtatgttagtgtagcatttccacttcaatttggagtgtatccgaggaatggtgaatgtttgcagatttgtagaaaagttgtactggcggatttggattgtttttaatcactgtgagtaatttgtgcaactgttgtaagctaacgaaagagtatttcatcgttggcttaatttatgcaaggggtttggtccaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="10516" stop="11424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10816" g_stop="11123" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="311" polyA_stop="328"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E224369" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224369" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="10816" e_stop="11123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAGATGTATCGAATAACAGGGATAGAGATCGGAA-TTTTATATTTCA-CCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAAGTTGTACTGGCGGATTTGGATTGTTTTTAATCACTGTGAGTAATTTGTGCAACTGTTGTAAGCTAACGAAAGAGTATTTCATCGTTGGCTTAATTTATGCAAGGGGTTTGGTCCAA</genome_strand>
        <mrna_strand>GCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTTATATTTCACCCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAAGTTGTACTGGCGGATTTGGATTGTTTTTAATCACTGTGAGTAATTTGTGCAACTGTTGTAAGCTAACGAAAGAGTATTTCATCGTTGGCTTAATTTATGCAAGGGGTTTGGTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E344845" ref_strand="+" ref_description="SGN-E344845 [cTOF-21-K22]">
      <seq>gcaactgagtttccccatacaatcctctcttgtgcagtatcttctaaagttgaaatctcgtatagaaaaatgaaagtacactcctgcattcatcctcttccctctactccctccaccggaattttggtctctgccggtcctgcggaagctaagcttgctgctaacaccagaaagctttattctttaactttgaattcctctaattatgtcccatttccttataaagatcagaaattttccagaagcagctctacggatttttctagaacggctatcggttcgaatgtaagtgaagatacagatgacatgtttgatgatctcctaagaacgcatggcaaagtggtatacaaaagaaatgaccaaaaacctgcaagtgaggagattgatgatgatgctgaaagcctatcgtttgcaatggctgtggctaaagttgcaagtgatgtcaaggctggaaatataaaggtcctctttgtcaagcctctagtatattggactcggtttttcattattgctactgcattctctcgcccacagattgatgccattgggaccagagtaagagatatggctgaggaacaatatggaagagttgcttctggagattcaaaacccaactcgtggacactactggactttggtgatngtcgttgttcatctatttcttcctccgcagcgtgagtactacaacctgnaagaattctatggcaatgcagcatccatcgaactaccatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="11390" stop="15328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11690" g_stop="11971" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11972" i_stop="12913" i_length="942">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12914" g_stop="13040" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="409" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13041" i_stop="13891" i_length="851">
            <donor d_prob="0.363" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13892" g_stop="14030" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="548" r_length="139" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14031" i_stop="14166" i_length="136">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14167" g_stop="14255" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="637" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14256" i_stop="14932" i_length="677">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14933" g_stop="15028" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="734" r_length="97" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E344845" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11690" e_stop="11971"/>
          <exon e_start="12914" e_stop="13040"/>
          <exon e_start="13892" e_stop="14030"/>
          <exon e_start="14167" e_stop="14255"/>
          <exon e_start="14933" e_stop="15028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACTGAGTTTCCCCATACAATCCTCTCTTGTGCAGTATCTTCTAAAGTTGAAATCTCGTATAGAAAAATGAAAGTACACTCCTGCATTCATCCTCTTCCCTCTACTCCCTCCACCGGAATTTTGGTCTCTGCCGGTCCTGCGGAAGCTAAGCTTGCTGCTAACACCAGAAAGCTTTATTCTTTAACTTTGAATTCCTCTAATTATGTCCCATTTCCTTATAAAGATCAGAAATTTTCCAGAAGCAGCTCTACGGATTTTTCTAGAACGGCTATCGGTTCGGTATTCCCTAAAACTTCAAGCTTCCGCCCCCCCCCCCCCCCTTTTTTTTTCTTTGTGAAGCTACAGCACTATTTGCAAATTGTTTTGCATTTTGCTGTTGTATTTTGTTGAAAAATTATCCCTTTTGTGGTTCAGAAGGGCATTCTTGTGAATTGAACGCCAATTTCTTATTTGAATTCTACACAAGAACCTGTTAACTAGCCGTCTCAAATTTTATTTTTCTAGTTGCAAAGTATGTTTTGTTGGATTTTCCAGCTAACTCAAATTATAATCTTGTCTTTGCTAATAGAAAGAGGAAGAGTTAACTGCATTTCACTCTTAATACAACTTTACTGCTCCTTCTGAAGACATTGATTAAGAAAATCTGTAGTCTTTGCCTTTATGTTTGGCTGTTGGATTAGTTGTATTAGATATGATAAGGTCTCTGTAAAAGTGAGTGAACTTGGAAAAAGAGATAGTTTATGCTCAAGAAAGTGAATTGTGACATCTTAAGGTTTTTGTATATGTCCAAACTATCTATCTCTCTCTAAAATGTCTCACTTAATGAACACTCCACTAATTGGAGAAACAAGGGTGAATTTTTGGGAGAAAAAGCAATAAATGCTTATTGTTTTTCTAGAACATCCAATATTTTAGAACAAATCCTTTGCCAAAAATGGCAAATATGAACCGGCAGTAGTACTATGTACTTCCCAGAAAAGAGTTTTTTTTCAAGGTGAACAACTACCATAAACTAGCCGACCTCAAGTTGTTTGGATTGAGATATAGTTGTCTGTTTGAACAACTACCTAAACACTGAATATAGTCTTTAGTAGTCTTAGTTCAAAGTCTATTCTTGAGGCTCGTTACGTGTGATTTCTTCTGGTTAGTCTGTGATTCATTATGAATGAATGATAATCTTTCTGCTTGATGCTGCACTTAACATGAATACCTTTGGTACAGAATGTAAGTGAAGATACAGATGACATGTTTGATGATCTCCTAAGAACGCATGGCAAAGTGGTATACAAAAGAAATGACCAAAAACCTGCAAGTGAGGAGATTGATGATGATGCTGAAAGCCTATCGTGTAAGTTGTTCTAAATTGTTAGTTGGATTGACTACTTCTCAGTTGCCGAAGCTTTGAGCCTCGTAGCTTATAGTTTTACTTTTCATGTTGGCCTGTACCTCTTAGCTCATAGTTTTATCTTAGGAACATCGGTTAGTTTTATGATATCCAAGAACGTGTTGACCAACTTTAATTTCATAACTCATGAGCATCTATGTTCTTGTTTTTGTTATTTTCCTTTGGGGAAAAAAGAGTATTTTCCCCTATGATTGATGTACTTACATTATACCTCTATGTAGTGAAAAAATAAGCTGAGAACCCTTTTAGCTTAAAAACCATCCATTTTACTCTCTTAATCAATTCCATACATGTCTCATTTTGTTGTTCCTTCAAAAATCTCATTGAAAATGTCATGAATATCCTCCATTCTTATGTGTAGGAACTCTTTGCATTAAAATGTTCATGTTCTTTCATTGCCCTTCAATCTAGTAGTAGTTCTACCAGAAGGTTTTTGAGATAATATTATTTGTATCAGAACTCTCTAACATAATTTCAAGTTTTTTTACATTGATATAGTTGTTAGTTATATTATAGAATTTAAGGTAGTATAGCCCAAATGTAATCGTAATTTGATTCGCATCATTTTGCTTAATATACTTTTGAGTTGTTTAGGTGACATTTACTGATAATGTTGCTTACTTTTAATGTATATTAGTGGTGAAATATTTTTACCTAAACTACTGAAGCATCATAAACAAACTATAGAAAATTATACAAGATGAAACCCAAAAAAGCACTTTAGAATCTGAGAATATGAATATGATGATTGACTTTAGGCAGAAGTCGTTGACAGTGCTGTTCCCTCTATGCAGTTGCAATGGCTGTGGCTAAAGTTGCAAGTGATGTCAAGGCTGGAGATATAAAGGTCCTCTTTGTCAAGCCTCTAGTATATTGGACTCGGTTTTTCATTATTGCTACTGCATTCTCTCGCCCACAGATTGATGCCATTGGGTATGATATCATATTCTGAGGTTTTCTATTGAATATTAACCAGCAGCAGTATAAATAATCGCAAATGAATAAATAGACGAAGAGGATTGACGATTATTTTTTGTAATTCTGAATTTTCTCTAAATTTCTCATAAAGGACCAGAGTAAGAGATATGGCTGAGGAACAATATGGAAGAGTTGCTTCTGGAGATTCAAAACCCAACTCGTGGACACTACTGGACTTTGGTAAGTAATTCATGGTACTTTAATAGTCCTGCTATTACTTGTGTCATGGCTGAAGAATTTCACTGGATATGAATTTATTATTGCCCTTGTTCTTGATTCACCCCTATTTTTTAATTTCATATGTGGACAAGTGCTGTTAAGGGGCAATATCCTTCTGCACATTAGGATTAGAAGGGAGTAACTTTGTTGTTGACTAACGACTACTTACTGTAACTGTGTTGCTTCACATTGTCCAACATAACTTACCCAAACATAGTGCTTAACTGTTACAAGTTATCAAACCATCAAGCAACTTGCAAAAATCCGTTATTATTCAGTTGAGCAAGAAAAGGAGGTTTAAAGGTTCAAAGCACAGAGATCTCTGACCCAGCCAGAGAAGCATTAGTTTATATCGTGCCCTGCTTCATATGGGTAGTGCTTTTCAAAAATCATCCCATGCATAAGGTTAACATCTGGTTTCAACATGGACTAGCTATCCCAGGGTGGCCAAACATGTTATGGCCAGGGTCAGAAGAAATGTTACCTCCAAAGCTATAAGGACTAAACATGAGTGGTTTGTTTTGATAAGGCGATGCTATATTATGTGCTACTATTTGACCCTTGCAGCAACCATGTACTATGCCATGAAATGTTGTTCTTCTTGCTGATATGTCGCTCCATGCCTCTCTTAATTACAGGTGAT-GTCGTTGTTCATCTATTTCTTCCTCCGCAGCGTGAGTACTACAACCTGGAAGAATTCTATGGCAATGCAGCATCCATCGAACTACCATTTG</genome_strand>
        <mrna_strand>GCAACTGAGTTTCCCCATACAATCCTCTCTTGTGCAGTATCTTCTAAAGTTGAAATCTCGTATAGAAAAATGAAAGTACACTCCTGCATTCATCCTCTTCCCTCTACTCCCTCCACCGGAATTTTGGTCTCTGCCGGTCCTGCGGAAGCTAAGCTTGCTGCTAACACCAGAAAGCTTTATTCTTTAACTTTGAATTCCTCTAATTATGTCCCATTTCCTTATAAAGATCAGAAATTTTCCAGAAGCAGCTCTACGGATTTTTCTAGAACGGCTATCGGTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTAAGTGAAGATACAGATGACATGTTTGATGATCTCCTAAGAACGCATGGCAAAGTGGTATACAAAAGAAATGACCAAAAACCTGCAAGTGAGGAGATTGATGATGATGCTGAAAGCCTATCGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAATGGCTGTGGCTAAAGTTGCAAGTGATGTCAAGGCTGGAAATATAAAGGTCCTCTTTGTCAAGCCTCTAGTATATTGGACTCGGTTTTTCATTATTGCTACTGCATTCTCTCGCCCACAGATTGATGCCATTGG........................................................................................................................................GACCAGAGTAAGAGATATGGCTGAGGAACAATATGGAAGAGTTGCTTCTGGAGATTCAAAACCCAACTCGTGGACACTACTGGACTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATNGTCGTTGTTCATCTATTTCTTCCTCCGCAGCGTGAGTACTACAACCTGNAAGAATTCTATGGCAATGCAGCATCCATCGAACTACCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E268156" ref_strand="+" ref_description="SGN-E268156 [cLEI-15-O4]">
      <seq>cctctcttgtgcagtatcttctaaagttgaaatctcgtatagaaaaatgaaagtacactcctgcattcatcctcttccctctactccctccaccggaattttggtctctgccggtcctgcggaagctaagcttgctgctaacaccagaaagctttattctttaactttgaattcctctaattatgtcccatttccttataaagatcagaaattttccagaagcagctctacggatttttctagaacggctatcggttcgaatgtaagtgaagatacagatgacatgtttgatgatctcctaagaacgcatggcaaagtggtatacaaaagaaatgaccaaaaacctgcaagtgaggagattgatgatgatgctgaaagcctatcgtttgcaatggctgtggctaaagttgcaagtgatgtcaaggctggagatataaaggtcctctttgtcaagcctctagtatattggactcggtttttcattattgctactgcattctctcgcccacagattgatgccattgggaccagagtaagagatatggctgaggaacaatatggaagagttgcttctggagattcaaaacccaactcgtggacactactggactttggtgatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="11413" stop="14561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11713" g_stop="11971" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11972" i_stop="12913" i_length="942">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12914" g_stop="13040" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="386" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13041" i_stop="13891" i_length="851">
            <donor d_prob="0.363" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13892" g_stop="14030" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="525" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14031" i_stop="14166" i_length="136">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14167" g_stop="14255" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="614" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E268156" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11713" e_stop="11971"/>
          <exon e_start="12914" e_stop="13040"/>
          <exon e_start="13892" e_stop="14030"/>
          <exon e_start="14167" e_stop="14255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTCTTGTGCAGTATCTTCTAAAGTTGAAATCTCGTATAGAAAAATGAAAGTACACTCCTGCATTCATCCTCTTCCCTCTACTCCCTCCACCGGAATTTTGGTCTCTGCCGGTCCTGCGGAAGCTAAGCTTGCTGCTAACACCAGAAAGCTTTATTCTTTAACTTTGAATTCCTCTAATTATGTCCCATTTCCTTATAAAGATCAGAAATTTTCCAGAAGCAGCTCTACGGATTTTTCTAGAACGGCTATCGGTTCGGTATTCCCTAAAACTTCAAGCTTCCGCCCCCCCCCCCCCCCTTTTTTTTTCTTTGTGAAGCTACAGCACTATTTGCAAATTGTTTTGCATTTTGCTGTTGTATTTTGTTGAAAAATTATCCCTTTTGTGGTTCAGAAGGGCATTCTTGTGAATTGAACGCCAATTTCTTATTTGAATTCTACACAAGAACCTGTTAACTAGCCGTCTCAAATTTTATTTTTCTAGTTGCAAAGTATGTTTTGTTGGATTTTCCAGCTAACTCAAATTATAATCTTGTCTTTGCTAATAGAAAGAGGAAGAGTTAACTGCATTTCACTCTTAATACAACTTTACTGCTCCTTCTGAAGACATTGATTAAGAAAATCTGTAGTCTTTGCCTTTATGTTTGGCTGTTGGATTAGTTGTATTAGATATGATAAGGTCTCTGTAAAAGTGAGTGAACTTGGAAAAAGAGATAGTTTATGCTCAAGAAAGTGAATTGTGACATCTTAAGGTTTTTGTATATGTCCAAACTATCTATCTCTCTCTAAAATGTCTCACTTAATGAACACTCCACTAATTGGAGAAACAAGGGTGAATTTTTGGGAGAAAAAGCAATAAATGCTTATTGTTTTTCTAGAACATCCAATATTTTAGAACAAATCCTTTGCCAAAAATGGCAAATATGAACCGGCAGTAGTACTATGTACTTCCCAGAAAAGAGTTTTTTTTCAAGGTGAACAACTACCATAAACTAGCCGACCTCAAGTTGTTTGGATTGAGATATAGTTGTCTGTTTGAACAACTACCTAAACACTGAATATAGTCTTTAGTAGTCTTAGTTCAAAGTCTATTCTTGAGGCTCGTTACGTGTGATTTCTTCTGGTTAGTCTGTGATTCATTATGAATGAATGATAATCTTTCTGCTTGATGCTGCACTTAACATGAATACCTTTGGTACAGAATGTAAGTGAAGATACAGATGACATGTTTGATGATCTCCTAAGAACGCATGGCAAAGTGGTATACAAAAGAAATGACCAAAAACCTGCAAGTGAGGAGATTGATGATGATGCTGAAAGCCTATCGTGTAAGTTGTTCTAAATTGTTAGTTGGATTGACTACTTCTCAGTTGCCGAAGCTTTGAGCCTCGTAGCTTATAGTTTTACTTTTCATGTTGGCCTGTACCTCTTAGCTCATAGTTTTATCTTAGGAACATCGGTTAGTTTTATGATATCCAAGAACGTGTTGACCAACTTTAATTTCATAACTCATGAGCATCTATGTTCTTGTTTTTGTTATTTTCCTTTGGGGAAAAAAGAGTATTTTCCCCTATGATTGATGTACTTACATTATACCTCTATGTAGTGAAAAAATAAGCTGAGAACCCTTTTAGCTTAAAAACCATCCATTTTACTCTCTTAATCAATTCCATACATGTCTCATTTTGTTGTTCCTTCAAAAATCTCATTGAAAATGTCATGAATATCCTCCATTCTTATGTGTAGGAACTCTTTGCATTAAAATGTTCATGTTCTTTCATTGCCCTTCAATCTAGTAGTAGTTCTACCAGAAGGTTTTTGAGATAATATTATTTGTATCAGAACTCTCTAACATAATTTCAAGTTTTTTTACATTGATATAGTTGTTAGTTATATTATAGAATTTAAGGTAGTATAGCCCAAATGTAATCGTAATTTGATTCGCATCATTTTGCTTAATATACTTTTGAGTTGTTTAGGTGACATTTACTGATAATGTTGCTTACTTTTAATGTATATTAGTGGTGAAATATTTTTACCTAAACTACTGAAGCATCATAAACAAACTATAGAAAATTATACAAGATGAAACCCAAAAAAGCACTTTAGAATCTGAGAATATGAATATGATGATTGACTTTAGGCAGAAGTCGTTGACAGTGCTGTTCCCTCTATGCAGTTGCAATGGCTGTGGCTAAAGTTGCAAGTGATGTCAAGGCTGGAGATATAAAGGTCCTCTTTGTCAAGCCTCTAGTATATTGGACTCGGTTTTTCATTATTGCTACTGCATTCTCTCGCCCACAGATTGATGCCATTGGGTATGATATCATATTCTGAGGTTTTCTATTGAATATTAACCAGCAGCAGTATAAATAATCGCAAATGAATAAATAGACGAAGAGGATTGACGATTATTTTTTGTAATTCTGAATTTTCTCTAAATTTCTCATAAAGGACCAGAGTAAGAGATATGGCTGAGGAACAATATGGAAGAGTTGCTTCTGGAGATTCAAAACCCAACTCGTGGACACTACTGGACTTTG</genome_strand>
        <mrna_strand>CCTCTCTTGTGCAGTATCTTCTAAAGTTGAAATCTCGTATAGAAAAATGAAAGTACACTCCTGCATTCATCCTCTTCCCTCTACTCCCTCCACCGGAATTTTGGTCTCTGCCGGTCCTGCGGAAGCTAAGCTTGCTGCTAACACCAGAAAGCTTTATTCTTTAACTTTGAATTCCTCTAATTATGTCCCATTTCCTTATAAAGATCAGAAATTTTCCAGAAGCAGCTCTACGGATTTTTCTAGAACGGCTATCGGTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTAAGTGAAGATACAGATGACATGTTTGATGATCTCCTAAGAACGCATGGCAAAGTGGTATACAAAAGAAATGACCAAAAACCTGCAAGTGAGGAGATTGATGATGATGCTGAAAGCCTATCGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAATGGCTGTGGCTAAAGTTGCAAGTGATGTCAAGGCTGGAGATATAAAGGTCCTCTTTGTCAAGCCTCTAGTATATTGGACTCGGTTTTTCATTATTGCTACTGCATTCTCTCGCCCACAGATTGATGCCATTGG........................................................................................................................................GACCAGAGTAAGAGATATGGCTGAGGAACAATATGGAAGAGTTGCTTCTGGAGATTCAAAACCCAACTCGTGGACACTACTGGACTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E265536" ref_strand="+" ref_description="SGN-E265536 [cLEI-14-H7]">
      <seq>cctctcttgtgcagtatcttgtaaagttgaaatctcgtatagaaaaatgaaagtacactcctgcattcatcctcttccctctactccctccaccggaattttggtctctgccggtcctgcggaagctaagcttgctgctaacaccagaaagctttattctttaactttgaattcctctaattatgtcccatttccttataaagatcagaaattttccagaagcagctctacggatttttctagaacggctatcggttcgaatgtaagtgaagatacagatgacatgtttgatgatctcctaagaacgcatggcaaagtggtatacaaaagaaatgaccaaaaacctgcaagtgaggagattgatgatgatgctgaaagcctatcgtttgcaatggctgtggctaaagttgcaagtgatgtcaaggctggagatataaaggtcctctttgtcaagcctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="11413" stop="14264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11713" g_stop="11971" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11972" i_stop="12913" i_length="942">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12914" g_stop="13040" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="386" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13041" i_stop="13891" i_length="851">
            <donor d_prob="0.363" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13892" g_stop="13964" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="459" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E265536" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11713" e_stop="11971"/>
          <exon e_start="12914" e_stop="13040"/>
          <exon e_start="13892" e_stop="13964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTCTTGTGCAGTATCTTCTAAAGTTGAAATCTCGTATAGAAAAATGAAAGTACACTCCTGCATTCATCCTCTTCCCTCTACTCCCTCCACCGGAATTTTGGTCTCTGCCGGTCCTGCGGAAGCTAAGCTTGCTGCTAACACCAGAAAGCTTTATTCTTTAACTTTGAATTCCTCTAATTATGTCCCATTTCCTTATAAAGATCAGAAATTTTCCAGAAGCAGCTCTACGGATTTTTCTAGAACGGCTATCGGTTCGGTATTCCCTAAAACTTCAAGCTTCCGCCCCCCCCCCCCCCCTTTTTTTTTCTTTGTGAAGCTACAGCACTATTTGCAAATTGTTTTGCATTTTGCTGTTGTATTTTGTTGAAAAATTATCCCTTTTGTGGTTCAGAAGGGCATTCTTGTGAATTGAACGCCAATTTCTTATTTGAATTCTACACAAGAACCTGTTAACTAGCCGTCTCAAATTTTATTTTTCTAGTTGCAAAGTATGTTTTGTTGGATTTTCCAGCTAACTCAAATTATAATCTTGTCTTTGCTAATAGAAAGAGGAAGAGTTAACTGCATTTCACTCTTAATACAACTTTACTGCTCCTTCTGAAGACATTGATTAAGAAAATCTGTAGTCTTTGCCTTTATGTTTGGCTGTTGGATTAGTTGTATTAGATATGATAAGGTCTCTGTAAAAGTGAGTGAACTTGGAAAAAGAGATAGTTTATGCTCAAGAAAGTGAATTGTGACATCTTAAGGTTTTTGTATATGTCCAAACTATCTATCTCTCTCTAAAATGTCTCACTTAATGAACACTCCACTAATTGGAGAAACAAGGGTGAATTTTTGGGAGAAAAAGCAATAAATGCTTATTGTTTTTCTAGAACATCCAATATTTTAGAACAAATCCTTTGCCAAAAATGGCAAATATGAACCGGCAGTAGTACTATGTACTTCCCAGAAAAGAGTTTTTTTTCAAGGTGAACAACTACCATAAACTAGCCGACCTCAAGTTGTTTGGATTGAGATATAGTTGTCTGTTTGAACAACTACCTAAACACTGAATATAGTCTTTAGTAGTCTTAGTTCAAAGTCTATTCTTGAGGCTCGTTACGTGTGATTTCTTCTGGTTAGTCTGTGATTCATTATGAATGAATGATAATCTTTCTGCTTGATGCTGCACTTAACATGAATACCTTTGGTACAGAATGTAAGTGAAGATACAGATGACATGTTTGATGATCTCCTAAGAACGCATGGCAAAGTGGTATACAAAAGAAATGACCAAAAACCTGCAAGTGAGGAGATTGATGATGATGCTGAAAGCCTATCGTGTAAGTTGTTCTAAATTGTTAGTTGGATTGACTACTTCTCAGTTGCCGAAGCTTTGAGCCTCGTAGCTTATAGTTTTACTTTTCATGTTGGCCTGTACCTCTTAGCTCATAGTTTTATCTTAGGAACATCGGTTAGTTTTATGATATCCAAGAACGTGTTGACCAACTTTAATTTCATAACTCATGAGCATCTATGTTCTTGTTTTTGTTATTTTCCTTTGGGGAAAAAAGAGTATTTTCCCCTATGATTGATGTACTTACATTATACCTCTATGTAGTGAAAAAATAAGCTGAGAACCCTTTTAGCTTAAAAACCATCCATTTTACTCTCTTAATCAATTCCATACATGTCTCATTTTGTTGTTCCTTCAAAAATCTCATTGAAAATGTCATGAATATCCTCCATTCTTATGTGTAGGAACTCTTTGCATTAAAATGTTCATGTTCTTTCATTGCCCTTCAATCTAGTAGTAGTTCTACCAGAAGGTTTTTGAGATAATATTATTTGTATCAGAACTCTCTAACATAATTTCAAGTTTTTTTACATTGATATAGTTGTTAGTTATATTATAGAATTTAAGGTAGTATAGCCCAAATGTAATCGTAATTTGATTCGCATCATTTTGCTTAATATACTTTTGAGTTGTTTAGGTGACATTTACTGATAATGTTGCTTACTTTTAATGTATATTAGTGGTGAAATATTTTTACCTAAACTACTGAAGCATCATAAACAAACTATAGAAAATTATACAAGATGAAACCCAAAAAAGCACTTTAGAATCTGAGAATATGAATATGATGATTGACTTTAGGCAGAAGTCGTTGACAGTGCTGTTCCCTCTATGCAGTTGCAATGGCTGTGGCTAAAGTTGCAAGTGATGTCAAGGCTGGAGATATAAAGGTCCTCTTTGTCAAGCCTCT</genome_strand>
        <mrna_strand>CCTCTCTTGTGCAGTATCTTGTAAAGTTGAAATCTCGTATAGAAAAATGAAAGTACACTCCTGCATTCATCCTCTTCCCTCTACTCCCTCCACCGGAATTTTGGTCTCTGCCGGTCCTGCGGAAGCTAAGCTTGCTGCTAACACCAGAAAGCTTTATTCTTTAACTTTGAATTCCTCTAATTATGTCCCATTTCCTTATAAAGATCAGAAATTTTCCAGAAGCAGCTCTACGGATTTTTCTAGAACGGCTATCGGTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTAAGTGAAGATACAGATGACATGTTTGATGATCTCCTAAGAACGCATGGCAAAGTGGTATACAAAAGAAATGACCAAAAACCTGCAAGTGAGGAGATTGATGATGATGCTGAAAGCCTATCGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAATGGCTGTGGCTAAAGTTGCAAGTGATGTCAAGGCTGGAGATATAAAGGTCCTCTTTGTCAAGCCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E732417" ref_strand="+" ref_description="SGN-E732417 [LB02AE02]">
      <seq>acattatgtcccatttccttataaagatcagaaattttccagaagcagctctacggatttttctagaacggctatcggttcgaatgtaagtgaagatacagatgacatgtttgatgatctcctaagaacgcatggcaaagtggtatacaaaagaaatgaccaaaaacctgcaagtgaggagattgatgatgatgctgaaagcctatcgtttgcaatggctgtggctaaagttgcaagtgatgtcaaggctggagatataaaggtcctctttgtcaagcctctagtatattggactcggtttttcattattgctactgcattctctcgcccacagattgatgccattgggaccagagtaagagatatggctgaggaacaatatggaagagttgcttctggagattcaaaacccaactcgtggacactactggactttggtgatgtcgttgttcatctatttcttcctccgcagcgtgagtactacaacctggaagaattctatggcaatgcagcatccatcgaactaccatttgagaaccaacaacaattgcgaggacctactggttattgaagtcccaacagttatggcctcgtggtgattaacagaaagtgtagcaaattatgaggcaatcacagtgttcccccgattgctgacaaggaacgattaacatatctgggcaaactctgttgatccactggttgcgttatttttcttaaattagtagtaagataaagctctctactaagttgtctctgtagaagtattggttaagaaatagtttacaagcattctgaactaataaaggctcattgtcacgtttgatgaaagaacctaacatcctgcttctttttccttgatgtgagttgagtttaaatgaagaatgaggatttaaataaaaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="11590" stop="15692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11890" g_stop="11971" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11972" i_stop="12913" i_length="942">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12914" g_stop="13040" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="209" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13041" i_stop="13891" i_length="851">
            <donor d_prob="0.363" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13892" g_stop="14030" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="348" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14031" i_stop="14166" i_length="136">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14167" g_stop="14255" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="437" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14256" i_stop="14932" i_length="677">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14933" g_stop="15391" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="895" r_length="458" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="896" polyA_stop="911"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E732417" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>896</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11890" e_stop="11971"/>
          <exon e_start="12914" e_stop="13040"/>
          <exon e_start="13892" e_stop="14030"/>
          <exon e_start="14167" e_stop="14255"/>
          <exon e_start="14933" e_stop="15391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTATGTCCCATTTCCTTATAAAGATCAGAAATTTTCCAGAAGCAGCTCTACGGATTTTTCTAGAACGGCTATCGGTTCGGTATTCCCTAAAACTTCAAGCTTCCGCCCCCCCCCCCCCCCTTTTTTTTTCTTTGTGAAGCTACAGCACTATTTGCAAATTGTTTTGCATTTTGCTGTTGTATTTTGTTGAAAAATTATCCCTTTTGTGGTTCAGAAGGGCATTCTTGTGAATTGAACGCCAATTTCTTATTTGAATTCTACACAAGAACCTGTTAACTAGCCGTCTCAAATTTTATTTTTCTAGTTGCAAAGTATGTTTTGTTGGATTTTCCAGCTAACTCAAATTATAATCTTGTCTTTGCTAATAGAAAGAGGAAGAGTTAACTGCATTTCACTCTTAATACAACTTTACTGCTCCTTCTGAAGACATTGATTAAGAAAATCTGTAGTCTTTGCCTTTATGTTTGGCTGTTGGATTAGTTGTATTAGATATGATAAGGTCTCTGTAAAAGTGAGTGAACTTGGAAAAAGAGATAGTTTATGCTCAAGAAAGTGAATTGTGACATCTTAAGGTTTTTGTATATGTCCAAACTATCTATCTCTCTCTAAAATGTCTCACTTAATGAACACTCCACTAATTGGAGAAACAAGGGTGAATTTTTGGGAGAAAAAGCAATAAATGCTTATTGTTTTTCTAGAACATCCAATATTTTAGAACAAATCCTTTGCCAAAAATGGCAAATATGAACCGGCAGTAGTACTATGTACTTCCCAGAAAAGAGTTTTTTTTCAAGGTGAACAACTACCATAAACTAGCCGACCTCAAGTTGTTTGGATTGAGATATAGTTGTCTGTTTGAACAACTACCTAAACACTGAATATAGTCTTTAGTAGTCTTAGTTCAAAGTCTATTCTTGAGGCTCGTTACGTGTGATTTCTTCTGGTTAGTCTGTGATTCATTATGAATGAATGATAATCTTTCTGCTTGATGCTGCACTTAACATGAATACCTTTGGTACAGAATGTAAGTGAAGATACAGATGACATGTTTGATGATCTCCTAAGAACGCATGGCAAAGTGGTATACAAAAGAAATGACCAAAAACCTGCAAGTGAGGAGATTGATGATGATGCTGAAAGCCTATCGTGTAAGTTGTTCTAAATTGTTAGTTGGATTGACTACTTCTCAGTTGCCGAAGCTTTGAGCCTCGTAGCTTATAGTTTTACTTTTCATGTTGGCCTGTACCTCTTAGCTCATAGTTTTATCTTAGGAACATCGGTTAGTTTTATGATATCCAAGAACGTGTTGACCAACTTTAATTTCATAACTCATGAGCATCTATGTTCTTGTTTTTGTTATTTTCCTTTGGGGAAAAAAGAGTATTTTCCCCTATGATTGATGTACTTACATTATACCTCTATGTAGTGAAAAAATAAGCTGAGAACCCTTTTAGCTTAAAAACCATCCATTTTACTCTCTTAATCAATTCCATACATGTCTCATTTTGTTGTTCCTTCAAAAATCTCATTGAAAATGTCATGAATATCCTCCATTCTTATGTGTAGGAACTCTTTGCATTAAAATGTTCATGTTCTTTCATTGCCCTTCAATCTAGTAGTAGTTCTACCAGAAGGTTTTTGAGATAATATTATTTGTATCAGAACTCTCTAACATAATTTCAAGTTTTTTTACATTGATATAGTTGTTAGTTATATTATAGAATTTAAGGTAGTATAGCCCAAATGTAATCGTAATTTGATTCGCATCATTTTGCTTAATATACTTTTGAGTTGTTTAGGTGACATTTACTGATAATGTTGCTTACTTTTAATGTATATTAGTGGTGAAATATTTTTACCTAAACTACTGAAGCATCATAAACAAACTATAGAAAATTATACAAGATGAAACCCAAAAAAGCACTTTAGAATCTGAGAATATGAATATGATGATTGACTTTAGGCAGAAGTCGTTGACAGTGCTGTTCCCTCTATGCAGTTGCAATGGCTGTGGCTAAAGTTGCAAGTGATGTCAAGGCTGGAGATATAAAGGTCCTCTTTGTCAAGCCTCTAGTATATTGGACTCGGTTTTTCATTATTGCTACTGCATTCTCTCGCCCACAGATTGATGCCATTGGGTATGATATCATATTCTGAGGTTTTCTATTGAATATTAACCAGCAGCAGTATAAATAATCGCAAATGAATAAATAGACGAAGAGGATTGACGATTATTTTTTGTAATTCTGAATTTTCTCTAAATTTCTCATAAAGGACCAGAGTAAGAGATATGGCTGAGGAACAATATGGAAGAGTTGCTTCTGGAGATTCAAAACCCAACTCGTGGACACTACTGGACTTTGGTAAGTAATTCATGGTACTTTAATAGTCCTGCTATTACTTGTGTCATGGCTGAAGAATTTCACTGGATATGAATTTATTATTGCCCTTGTTCTTGATTCACCCCTATTTTTTAATTTCATATGTGGACAAGTGCTGTTAAGGGGCAATATCCTTCTGCACATTAGGATTAGAAGGGAGTAACTTTGTTGTTGACTAACGACTACTTACTGTAACTGTGTTGCTTCACATTGTCCAACATAACTTACCCAAACATAGTGCTTAACTGTTACAAGTTATCAAACCATCAAGCAACTTGCAAAAATCCGTTATTATTCAGTTGAGCAAGAAAAGGAGGTTTAAAGGTTCAAAGCACAGAGATCTCTGACCCAGCCAGAGAAGCATTAGTTTATATCGTGCCCTGCTTCATATGGGTAGTGCTTTTCAAAAATCATCCCATGCATAAGGTTAACATCTGGTTTCAACATGGACTAGCTATCCCAGGGTGGCCAAACATGTTATGGCCAGGGTCAGAAGAAATGTTACCTCCAAAGCTATAAGGACTAAACATGAGTGGTTTGTTTTGATAAGGCGATGCTATATTATGTGCTACTATTTGACCCTTGCAGCAACCATGTACTATGCCATGAAATGTTGTTCTTCTTGCTGATATGTCGCTCCATGCCTCTCTTAATTACAGGTGATGTCGTTGTTCATCTATTTCTTCCTCCGCAGCGTGAGTACTACAACCTGGAAGAATTCTATGGCAATGCAGCATCCATCGAACTACCATTTGAGAACCAACAACAATTGCGAGGACCTACTGGTTATTGAAGTCCCAACAGTTATGGCCTCGTGGTGATTAACAGAAAGTGTAGCAAATTATGAGGCAATCACAGTGTTCCCCCGATTGCTGACAAGGAACGATTAACATATCTGGGCAAACTCTGTTGATCCACTGGTTGCGTTATTTTTCTTAAATTAGTAGTAAGATAAAGCTCTCTACTAAGTTGTCTCTGTAGAAGTATTGGTTAAGAAATAGTTTACAAGCATTCTGAACTAATAAGGGCTCATTGTCACGTTTGATGAAAGAACCTAACATCCTGCTTCTTTTTCCCTTGATGTGAGTTGAGTTTAAATGAAGAATGAGGATTTAAAT</genome_strand>
        <mrna_strand>ACATTATGTCCCATTTCCTTATAAAGATCAGAAATTTTCCAGAAGCAGCTCTACGGATTTTTCTAGAACGGCTATCGGTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTAAGTGAAGATACAGATGACATGTTTGATGATCTCCTAAGAACGCATGGCAAAGTGGTATACAAAAGAAATGACCAAAAACCTGCAAGTGAGGAGATTGATGATGATGCTGAAAGCCTATCGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAATGGCTGTGGCTAAAGTTGCAAGTGATGTCAAGGCTGGAGATATAAAGGTCCTCTTTGTCAAGCCTCTAGTATATTGGACTCGGTTTTTCATTATTGCTACTGCATTCTCTCGCCCACAGATTGATGCCATTGG........................................................................................................................................GACCAGAGTAAGAGATATGGCTGAGGAACAATATGGAAGAGTTGCTTCTGGAGATTCAAAACCCAACTCGTGGACACTACTGGACTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTCGTTGTTCATCTATTTCTTCCTCCGCAGCGTGAGTACTACAACCTGGAAGAATTCTATGGCAATGCAGCATCCATCGAACTACCATTTGAGAACCAACAACAATTGCGAGGACCTACTGGTTATTGAAGTCCCAACAGTTATGGCCTCGTGGTGATTAACAGAAAGTGTAGCAAATTATGAGGCAATCACAGTGTTCCCCCGATTGCTGACAAGGAACGATTAACATATCTGGGCAAACTCTGTTGATCCACTGGTTGCGTTATTTTTCTTAAATTAGTAGTAAGATAAAGCTCTCTACTAAGTTGTCTCTGTAGAAGTATTGGTTAAGAAATAGTTTACAAGCATTCTGAACTAATAAAGGCTCATTGTCACGTTTGATGAAAGAACCTAACATCCTGCTTCTTTTT-CCTTGATGTGAGTTGAGTTTAAATGAAGAATGAGGATTTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E395416" ref_strand="-" ref_description="SGN-E395416 [TUS-16-G22]">
      <seq>cctacattcaactttccaacagtccaagatggatttatgaagcccatgatgaggagaaggaagagtaactcaagatctaaacctcttccaccttcaaagaggttgagattggaggcacaaagagttctcaaagagagagttcaagacatagctgataaaaagggcattaagctgaggttctgcaccttaaaggattgtgaaagtcacatccagtcacttgatagcccatgtacgaacataagaatggaaattggatggccaccgggagttccatttgttcacccacatgatctcccaaataaggctaagattggatttcttgaaacatatgaacctggttggtctgcaactcatgatatggagttgagcctaatcgatcccggacagccaagtcaacacacttctaactgaatctatgttgctatcagaatgctgcctgatgagtgcttggattcattataccaatatttgtctgcttagttatgctcgtctcatgcagatcttgctaatttgtatatgaacttcaattaagatatgaatgcacaatgaactgttcctttgtttatcgtaatcgttgtccctgtacatattagtttgtaaaatttgatggaatattagttgtaaattccgaatgtactcctagttttctcggctctcatatcttagctcttgtggagcattaaatgttggccaaagagtttgaatttatatagtggttggataaaagaagctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="18075" stop="15313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17775" g_stop="17745" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17744" i_stop="16590" i_length="1155">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.860" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16589" g_stop="16212" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="409" r_length="378" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16211" i_stop="15926" i_length="286">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15925" g_stop="15592" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="743" r_length="334" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E395416" ref_strand="-">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395416" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="17775" e_stop="17745"/>
          <exon e_start="16589" e_stop="16212"/>
          <exon e_start="15925" e_stop="15592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTACATTCAACTTTCCAACAGTCCAAGATGGTATGACATCCTTTTTTTCTTTTTTCCTATTTGCATTATCAGTATGGAAATGAAAATCTAGAATTATTACGTTTTTGTTTCTATTCTCTTTTTTATATTTAAATGAATTAGTAGACACAATAAGGATAAGGTGACTTAGAATTGGCTTTCATGGATGGTGCTCCCTAATGTTTTCAGTTGGAGGGCCAGTTGACAACTTGATTAGGAAAGTAGGTTGTTCATAATCTTGAAACTTTTGTGGTTTTTTGAAAAATGTGAGTCTAAAGTAGCATCTAGTTAGAGTTATCATGATTATGAGTCCACACAACTAATACCTCCGAACAGATTTTATTTTTTTAGGATGGCAATGTATACATACATATTAAGCACAAAGATTGTGCTGGAAACCAAAACACGGGTGTTACTTCAGAGAAAAGAACCTCAACACAGCATTCCTTCTTCTTCTTCTTACGAGGAATCTAAGACATCTTGACTTGTATTAGGATCATCTATGCACTAAAAACTCAAAAGAAGGATTCAATTCATCTTAAGTTTCTGTAAGGAGCTGTTTGTAGCTTCAAAATATCTTTAATTTCTTTCCTTCCAATCCGAAAAAAGTACTTGGTGTTAATTTTGAAGATTTATTTAGAACAAAAACAAAATGCTGACTGAAGCTGGTGTCTCACGTATGATTGGTCAGAAATATGAAAAGTTTTGTGACAAGCTTAGCCGTTTTTCATAATTAAAAGTGAAAGGTCTTAGTTTTGCTTGTTGAGGACCTGAAGGACTGTTATTATCTCGAATATCTGGAAATGACTTTCAAACATGGTCAAAGTAGATAAAGCAGCCTCTATTGGTTTAATCATGAGTTCAAAAGGTTTCAGATTCTGTAAGTTTCTTTCTGTATCAATGTGAAGGAGGTATCTAGAAGCCGAATTACTTGCAGTTTCAAGTAATGGAACTAAAGAAGGATGCCTTTTTATTTTTACATTTTCTTGTGTTAAATGCTCTCCCATGTTTTTTCGTAATATTGATAGTTTGGTGTTTTTTACTTTTCCTTAAGCAATATATTACTGGCTGGATTTTTTTAACATTGAATTGAGCTCTTTTCTGCTAGTATTCCTTAGTAAGAAGCTTTTAACAACAGGTCCTTGGATCGATGAAATGCTGGTACAGGATCTATGAAGCCCATGATGAGGAGAAGGAAGAGTAACTCAAGATCTAAACCTCTTCCACCTTCAAAGAGGTTGAGATTGGAGGCACAAAGAGTTCTCAAAGAGAGAGTTCAAGACATAGCTGATAAAAAGGGCATTAAGCTGAGGTTCTGCACCTTAAAGGATTGTGAAAGTCACATCCAGTCACTTGATAGCCCATGTACGAACATAAGAATGGAAATTGGATGGCCACCGGGAGTTCCATTTGTTCACCCACATGATCTCCCAAATAAGGCTAAGATTGGATTTCTTGAAACATATGAACCTGGTTGGTCTGCAACTCATGATATGGAGTTGAGCCTAATCGATCCCGGACAGCCAAGTCAACACACTTCTAACTGTAACTATCATTCCCCTAATTATCCTTGTTTTTCTGCATCCGTATCTTTATTTAAGCAGTAGATGTTTCTGGTTTCTTTAGTTGCATATGCATGAGAGATGGCGTATAAGTTCACATCTTTCCTATCTTCTGCATTGGCCATGTTGCTAGTAACAACATTAATCCATTTGAAGAAGCATTTCTGTTCATCTACTCATGCATTCTAGAAGTTTACACCCTCCCTCCCTGTTCTTTTACTTTTACTTTTGGCTCTTGTATATACTGAAAGCAAAAATGTGTTCTGCAGGAATCTATGTTGCTATCAGAATGCTGCCTGATGAGTGCTTGGATTCATTATACCAATATTTGTCTGCTTAGTTATGCTCGTCTCATGCAGATCTTGCTAATTTGTATATGAACTTCAATTAAGATATGAATGCACAATGAACTGTTCCTTTGTTTATCGTAATCGTTGTCCCTGTACATATTAGTTTGTAAAATTTGATGGAATATTAGTTGTAAATTCCGAATGTACTCCTAGTTTTCTCGGCTCTCATATCTTAGCTCTTGTGGAGCATTTTATGTTGGCCAAAGAGTTTGAATTTATATAGTGGTTGGATCTTAGAAGCTAACTTAACTTC</genome_strand>
        <mrna_strand>CCTACATTCAACTTTCCAACAGTCCAAGATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTATGAAGCCCATGATGAGGAGAAGGAAGAGTAACTCAAGATCTAAACCTCTTCCACCTTCAAAGAGGTTGAGATTGGAGGCACAAAGAGTTCTCAAAGAGAGAGTTCAAGACATAGCTGATAAAAAGGGCATTAAGCTGAGGTTCTGCACCTTAAAGGATTGTGAAAGTCACATCCAGTCACTTGATAGCCCATGTACGAACATAAGAATGGAAATTGGATGGCCACCGGGAGTTCCATTTGTTCACCCACATGATCTCCCAAATAAGGCTAAGATTGGATTTCTTGAAACATATGAACCTGGTTGGTCTGCAACTCATGATATGGAGTTGAGCCTAATCGATCCCGGACAGCCAAGTCAACACACTTCTAACT..............................................................................................................................................................................................................................................................................................GAATCTATGTTGCTATCAGAATGCTGCCTGATGAGTGCTTGGATTCATTATACCAATATTTGTCTGCTTAGTTATGCTCGTCTCATGCAGATCTTGCTAATTTGTATATGAACTTCAATTAAGATATGAATGCACAATGAACTGTTCCTTTGTTTATCGTAATCGTTGTCCCTGTACATATTAGTTTGTAAAATTTGATGGAATATTAGTTGTAAATTCCGAATGTACTCCTAGTTTTCTCGGCTCTCATATCTTAGCTCTTGTGGAGCATTAAATGTTGGCCAAAGAGTTTGAATTTATATAGTGGTTGGATAAAAGAAGCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E710992" ref_strand="+" ref_description="SGN-E710992 [FA57CE06]">
      <seq>ctgacatattctctttgcttggtagagcagcaagggatatattggacgccatcagcttctatttaaatctgcgtagctctccatttactgaaatacttgataatgttccactcagaaatcgagaaacatcatcctctgtattatccgtctgttgtcattccaggccatcttttcagggtgctcagcaccatggcctgacaactcaagaggatggtcatttggggatgttctcggatcatgagcatcaggttgacagaagccttgttacaattgttaagtcggataggcctggtctacatgtaagagattttcatggtcactgggttcttgtggatggtgatcttggcccccaagaagcaattgtttatcctggccttgcattatatcaggcaactgcgggctatatcagccctgcacttcatcggacagacattggtaatcagcagggtagcatatatggacgctgttctctctcttttaaacttatgcccaagtccatgaccaacctcaattgttcagaaatgcgggctgctggtcatggggttgaagctcaattccagcttcccgtaccagttgatgacttcatgcagagatcaactgatcagttgcttaacaggagcaatttccctacattcaactttccaacagtccaagatggatctatgaagcccatgatgaggagaaggaagagtaacctcaagatctaaacctcttccacctttcaagaggttgagatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="18701" stop="16211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18401" g_stop="17745" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="657" r_length="657" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17744" i_stop="16590" i_length="1155">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.860" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16589" g_stop="16511" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="737" r_length="80" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E710992" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18401" e_stop="17745"/>
          <exon e_start="16589" e_stop="16511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGACATATTCTCTTTGCTTGGTAGAGCAGCAAGGGATATATTGGACGCCATCAGCTTCTATTTAAATCTGCGTAGCTCTCCATTTACTGAAATACTTGATAATGTTCCACTCAGAAATCGAGAAACATCATCCTCTGTATTATCCGTCTGTTGTCATTCCAGGCCATCTTTTCAGGGTGCTCAGCACCATGGCCTGACAACTCAAGAGGATGGTCATTTGGGGATGTTCTCGGATCATGAGCATCAGGTTGACAGAAGCCTTGTTACAATTGTTAAGTCGGATAGGCCTGGTCTACATGTAAGAGATTTTCATGGTCACTGGGTTCTTGTGGATGGTGATCTTGGCCCCCAAGAAGCAATTGTTTATCCTGGCCTTGCATTATATCAGGCAACTGCGGGCTATATCAGCCCTGCACTTCATCGGACAGACATTGGTAATCAGCAGGGTAGCATATATGGACGCTGTTCTCTCTCTTTTAAACTTATGCCCAAGTCCATGACCAACCTCAATTGTTCAGAAATGCGGGCTGCTGGTCATGGGGTTGAAGCTCAATTCCAGCTTCCCGTACCAGTTGATGACTTCATGCAGAGATCAACTGATCAGTTGCTTAACAGGAGCAATTTCCCTACATTCAACTTTCCAACAGTCCAAGATGGTATGACATCCTTTTTTTCTTTTTTCCTATTTGCATTATCAGTATGGAAATGAAAATCTAGAATTATTACGTTTTTGTTTCTATTCTCTTTTTTATATTTAAATGAATTAGTAGACACAATAAGGATAAGGTGACTTAGAATTGGCTTTCATGGATGGTGCTCCCTAATGTTTTCAGTTGGAGGGCCAGTTGACAACTTGATTAGGAAAGTAGGTTGTTCATAATCTTGAAACTTTTGTGGTTTTTTGAAAAATGTGAGTCTAAAGTAGCATCTAGTTAGAGTTATCATGATTATGAGTCCACACAACTAATACCTCCGAACAGATTTTATTTTTTTAGGATGGCAATGTATACATACATATTAAGCACAAAGATTGTGCTGGAAACCAAAACACGGGTGTTACTTCAGAGAAAAGAACCTCAACACAGCATTCCTTCTTCTTCTTCTTACGAGGAATCTAAGACATCTTGACTTGTATTAGGATCATCTATGCACTAAAAACTCAAAAGAAGGATTCAATTCATCTTAAGTTTCTGTAAGGAGCTGTTTGTAGCTTCAAAATATCTTTAATTTCTTTCCTTCCAATCCGAAAAAAGTACTTGGTGTTAATTTTGAAGATTTATTTAGAACAAAAACAAAATGCTGACTGAAGCTGGTGTCTCACGTATGATTGGTCAGAAATATGAAAAGTTTTGTGACAAGCTTAGCCGTTTTTCATAATTAAAAGTGAAAGGTCTTAGTTTTGCTTGTTGAGGACCTGAAGGACTGTTATTATCTCGAATATCTGGAAATGACTTTCAAACATGGTCAAAGTAGATAAAGCAGCCTCTATTGGTTTAATCATGAGTTCAAAAGGTTTCAGATTCTGTAAGTTTCTTTCTGTATCAATGTGAAGGAGGTATCTAGAAGCCGAATTACTTGCAGTTTCAAGTAATGGAACTAAAGAAGGATGCCTTTTTATTTTTACATTTTCTTGTGTTAAATGCTCTCCCATGTTTTTTCGTAATATTGATAGTTTGGTGTTTTTTACTTTTCCTTAAGCAATATATTACTGGCTGGATTTTTTTAACATTGAATTGAGCTCTTTTCTGCTAGTATTCCTTAGTAAGAAGCTTTTAACAACAGGTCCTTGGATCGATGAAATGCTGGTACAGGATCTATGAAGCCCATGATGAGGAGAAGGAAGAGTAA-CTCAAGATCTAAACCTCTTCCACCTTCAAAGAGGTTGAGATT</genome_strand>
        <mrna_strand>CTGACATATTCTCTTTGCTTGGTAGAGCAGCAAGGGATATATTGGACGCCATCAGCTTCTATTTAAATCTGCGTAGCTCTCCATTTACTGAAATACTTGATAATGTTCCACTCAGAAATCGAGAAACATCATCCTCTGTATTATCCGTCTGTTGTCATTCCAGGCCATCTTTTCAGGGTGCTCAGCACCATGGCCTGACAACTCAAGAGGATGGTCATTTGGGGATGTTCTCGGATCATGAGCATCAGGTTGACAGAAGCCTTGTTACAATTGTTAAGTCGGATAGGCCTGGTCTACATGTAAGAGATTTTCATGGTCACTGGGTTCTTGTGGATGGTGATCTTGGCCCCCAAGAAGCAATTGTTTATCCTGGCCTTGCATTATATCAGGCAACTGCGGGCTATATCAGCCCTGCACTTCATCGGACAGACATTGGTAATCAGCAGGGTAGCATATATGGACGCTGTTCTCTCTCTTTTAAACTTATGCCCAAGTCCATGACCAACCTCAATTGTTCAGAAATGCGGGCTGCTGGTCATGGGGTTGAAGCTCAATTCCAGCTTCCCGTACCAGTTGATGACTTCATGCAGAGATCAACTGATCAGTTGCTTAACAGGAGCAATTTCCCTACATTCAACTTTCCAACAGTCCAAGATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTATGAAGCCCATGATGAGGAGAAGGAAGAGTAACCTCAAGATCTAAACCTCTTCCACCTTTCAAGAGGTTGAGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E316647" ref_strand="+" ref_description="SGN-E316647 [cTOB-7-N19]">
      <seq>agaaaagaacctcaacacagcattccttcttcttcttcttacgaggaatctaagacatcttgacttgtattaggatcatctatgcactaaaaactcaaaagaaggattcaattcatcttaagtttctgtaaggagctgtttgtagcttcaaaatatctttaatttctttccttccaatccgaaaaaagtacttggtgttaattttgaagatttatttagaacaaaaacaaaatgctgactgaagctggtgtctcacgtatgattggtcagaaatatgaaaagttttgtgacaagcttagccgtttttcataattaaaagtgaaaggtcttatttttgcttgttgaggacctgaaggactgttattatctcgaatatctggaaatgactttcaaacatggtcaaagtagataaagcagcctctattggtttaatcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="17635" stop="16599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17335" g_stop="16899" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E316647" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17335" e_stop="16899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGAACCTCAACACAGCATTCCTTCTTCTTCTTCTTACGAGGAATCTAAGACATCTTGACTTGTATTAGGATCATCTATGCACTAAAAACTCAAAAGAAGGATTCAATTCATCTTAAGTTTCTGTAAGGAGCTGTTTGTAGCTTCAAAATATCTTTAATTTCTTTCCTTCCAATCCGAAAAAAGTACTTGGTGTTAATTTTGAAGATTTATTTAGAACAAAAACAAAATGCTGACTGAAGCTGGTGTCTCACGTATGATTGGTCAGAAATATGAAAAGTTTTGTGACAAGCTTAGCCGTTTTTCATAATTAAAAGTGAAAGGTCTTAGTTTTGCTTGTTGAGGACCTGAAGGACTGTTATTATCTCGAATATCTGGAAATGACTTTCAAACATGGTCAAAGTAGATAAAGCAGCCTCTATTGGTTTAATCATG</genome_strand>
        <mrna_strand>AGAAAAGAACCTCAACACAGCATTCCTTCTTCTTCTTCTTACGAGGAATCTAAGACATCTTGACTTGTATTAGGATCATCTATGCACTAAAAACTCAAAAGAAGGATTCAATTCATCTTAAGTTTCTGTAAGGAGCTGTTTGTAGCTTCAAAATATCTTTAATTTCTTTCCTTCCAATCCGAAAAAAGTACTTGGTGTTAATTTTGAAGATTTATTTAGAACAAAAACAAAATGCTGACTGAAGCTGGTGTCTCACGTATGATTGGTCAGAAATATGAAAAGTTTTGTGACAAGCTTAGCCGTTTTTCATAATTAAAAGTGAAAGGTCTTATTTTTGCTTGTTGAGGACCTGAAGGACTGTTATTATCTCGAATATCTGGAAATGACTTTCAAACATGGTCAAAGTAGATAAAGCAGCCTCTATTGGTTTAATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E334098" ref_strand="+" ref_description="SGN-E334098 [cTOD-21-C9]">
      <seq>tctctcgagattgagacctacatgcttggtgaaaccggttgcagtgcaacgtctgcctatggggtatggtctcgagttaatatatttcagcacaagcagtgcaaaatctagaggatttcatggcaggcaatggcctgccagctctgggtcgtgtgaagctcagtgatttggtaccattggaaggtcttccttctgattcgtataaattatctgtctcaactttgtcacagtcattggctcagtattcagctgccattatacagctatccacaagtgatggagctcttttaaggtctagtctagagtctgcccgactttactttcaacacaaaccctcttatcctgcagcggatgttattcattctgatgattctcaggagtggtgtaagacctctggttaccatgcagatcctcaacaatggcaagaaacatatgatttcaggccagggctcactccttcggaacccaccactgaaattgaattccctcctgctggtttggctgacatattctcttttgcttggtagagcagcaagggatatattggacgccatcagcttctatttaaatctgcgtagctctccatttactgaaatacttgataatggtccactcagaaatcgagaaacatcatcctctgtattatccgtctgttgtcattccaggccatcttttcagggtgctcagcaccatggcctgacaactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="19547" stop="17897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19247" g_stop="19187" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19186" i_stop="18843" i_length="344">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18842" g_stop="18197" g_length="646"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="707" r_length="646" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E334098" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19247" e_stop="19187"/>
          <exon e_start="18842" e_stop="18197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCGAGATTGAGACCTACATGCTTGGTGAAACCGGTTGCAGTGCAACGTCTGCCTATGGTGCGTTAAAAAGCCTCAAATTTTTCATCTTCAACCTCAACATTTTTCCTTATTATGCTCCTAAACTTGTCACATATTTATAGCTAAGTTTTTTTTTTTTTTTAATAGGCGATGCCTAGTAGTTGGGTTTAAGGTTTAGTGATGTTAGTATATTGATTGCTAATAGTGTTATTTGTCTGTTTAATATACAGAAATTAAACTCAAATTATTGAGTATAGAATGAAAAAGTTGGTCCAGTAGGGATATTGATACTGAGGGTTCATATAGTCGACCTCAATTGTGAAAGTTGGTTTTTTTATTTCATTTTAATTTCTGAATTGACTGGTTTTCTATTTGTCATTCAGTGGGTATGGTCTCGAGTTAATATATTTCAGCACAAGCAGTGCAAAATCTAGAGGATTTCATGGCAGGCAATGGCCTGCCAGCTCTGGGTCGTGTGAAGCTCAGTGATTTGGTACCATTGGAAGGTCTTCCTTCTGATTCGTATAAATTATCTGTCTCAACTTTGTCACAGTCATTGGCTCAGTATTCAGCTGCCATTATACAGCTATCCACAAGTGATGGAGCTCTTTTAAGGTCTAGTCTAGAGTCTGCCCGACTTTACTTTCAACACAAACCCTCTTATCCTGCAGCGGATGTTATTCATTCTGATGATTCTCAGGAGTGGTGTAAGACCTCTGGTTACCATGCAGATCCTCAACAATGGCAAGAAACATATGATTTCAGGCCAGGGCTCACTCCTTCGGAACCCACCACTGAAATTGAATTCCCTCCTGCTGGTTTGGCTGACATATTCTC-TTTGCTTGGTAGAGCAGCAAGGGATATATTGGACGCCATCAGCTTCTATTTAAATCTGCGTAGCTCTCCATTTACTGAAATACTTGATAATGTTCCACTCAGAAATCGAGAAACATCATCCTCTGTATTATCCGTCTGTTGTCATTCCAGGCCATCTTTTCAGGGTGCTCAGCACCATGGCCTGACAACTCA</genome_strand>
        <mrna_strand>TCTCTCGAGATTGAGACCTACATGCTTGGTGAAACCGGTTGCAGTGCAACGTCTGCCTATG........................................................................................................................................................................................................................................................................................................................................................-GGGTATGGTCTCGAGTTAATATATTTCAGCACAAGCAGTGCAAAATCTAGAGGATTTCATGGCAGGCAATGGCCTGCCAGCTCTGGGTCGTGTGAAGCTCAGTGATTTGGTACCATTGGAAGGTCTTCCTTCTGATTCGTATAAATTATCTGTCTCAACTTTGTCACAGTCATTGGCTCAGTATTCAGCTGCCATTATACAGCTATCCACAAGTGATGGAGCTCTTTTAAGGTCTAGTCTAGAGTCTGCCCGACTTTACTTTCAACACAAACCCTCTTATCCTGCAGCGGATGTTATTCATTCTGATGATTCTCAGGAGTGGTGTAAGACCTCTGGTTACCATGCAGATCCTCAACAATGGCAAGAAACATATGATTTCAGGCCAGGGCTCACTCCTTCGGAACCCACCACTGAAATTGAATTCCCTCCTGCTGGTTTGGCTGACATATTCTCTTTTGCTTGGTAGAGCAGCAAGGGATATATTGGACGCCATCAGCTTCTATTTAAATCTGCGTAGCTCTCCATTTACTGAAATACTTGATAATGGTCCACTCAGAAATCGAGAAACATCATCCTCTGTATTATCCGTCTGTTGTCATTCCAGGCCATCTTTTCAGGGTGCTCAGCACCATGGCCTGACAACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E334002" ref_strand="+" ref_description="SGN-E334002 [cTOD-24-K9]">
      <seq>tctctcgagattgagacctacatgcttggtgaaaccggttgcagtgcaacgtctgcctatggggtatggtctcgagttaatatatttcagcacaagcagtgcaaaatctagaggatttcatggcaggcaatggcctgccagctctgggtcgtgtgaagctcagtgatttggtaccattggaaggtcttccttctgattcgtataaattatctgtctcaactttgtcacagtcattggctcagtattcagctgccattatacagctatccacaagtgatggagctcttttaaggtctagtctagagtctgcccgactttactttcaacacaaaccctcttatcctgcagcggatgttattcattctgatgattctcaggagtggtgtaagacctctggttaccatgcagatcctcaacaatggcaagaaacatatgatttcaggccagggctcactccttcggaacccaccactgaaattgaattccctcctgctggtttggctgacatattctctttgcttggtagagcagcaagggatatattggacgccatcagcttctatttaaatctgcgtagctctccatttactgaaatacttgataatgttccactcagaaatcgagaaacatcatcctctgtattatccgtctggtgtcattccaggccatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="19547" stop="17930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19247" g_stop="19187" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19186" i_stop="18843" i_length="344">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18842" g_stop="18230" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="673" r_length="612" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E334002" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19247" e_stop="19187"/>
          <exon e_start="18842" e_stop="18230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCGAGATTGAGACCTACATGCTTGGTGAAACCGGTTGCAGTGCAACGTCTGCCTATGGTGCGTTAAAAAGCCTCAAATTTTTCATCTTCAACCTCAACATTTTTCCTTATTATGCTCCTAAACTTGTCACATATTTATAGCTAAGTTTTTTTTTTTTTTTAATAGGCGATGCCTAGTAGTTGGGTTTAAGGTTTAGTGATGTTAGTATATTGATTGCTAATAGTGTTATTTGTCTGTTTAATATACAGAAATTAAACTCAAATTATTGAGTATAGAATGAAAAAGTTGGTCCAGTAGGGATATTGATACTGAGGGTTCATATAGTCGACCTCAATTGTGAAAGTTGGTTTTTTTATTTCATTTTAATTTCTGAATTGACTGGTTTTCTATTTGTCATTCAGTGGGTATGGTCTCGAGTTAATATATTTCAGCACAAGCAGTGCAAAATCTAGAGGATTTCATGGCAGGCAATGGCCTGCCAGCTCTGGGTCGTGTGAAGCTCAGTGATTTGGTACCATTGGAAGGTCTTCCTTCTGATTCGTATAAATTATCTGTCTCAACTTTGTCACAGTCATTGGCTCAGTATTCAGCTGCCATTATACAGCTATCCACAAGTGATGGAGCTCTTTTAAGGTCTAGTCTAGAGTCTGCCCGACTTTACTTTCAACACAAACCCTCTTATCCTGCAGCGGATGTTATTCATTCTGATGATTCTCAGGAGTGGTGTAAGACCTCTGGTTACCATGCAGATCCTCAACAATGGCAAGAAACATATGATTTCAGGCCAGGGCTCACTCCTTCGGAACCCACCACTGAAATTGAATTCCCTCCTGCTGGTTTGGCTGACATATTCTCTTTGCTTGGTAGAGCAGCAAGGGATATATTGGACGCCATCAGCTTCTATTTAAATCTGCGTAGCTCTCCATTTACTGAAATACTTGATAATGTTCCACTCAGAAATCGAGAAACATCATCCTCTGTATTATCCGTCTGTTGTCATTCCAGGCCATCTTT</genome_strand>
        <mrna_strand>TCTCTCGAGATTGAGACCTACATGCTTGGTGAAACCGGTTGCAGTGCAACGTCTGCCTATG........................................................................................................................................................................................................................................................................................................................................................-GGGTATGGTCTCGAGTTAATATATTTCAGCACAAGCAGTGCAAAATCTAGAGGATTTCATGGCAGGCAATGGCCTGCCAGCTCTGGGTCGTGTGAAGCTCAGTGATTTGGTACCATTGGAAGGTCTTCCTTCTGATTCGTATAAATTATCTGTCTCAACTTTGTCACAGTCATTGGCTCAGTATTCAGCTGCCATTATACAGCTATCCACAAGTGATGGAGCTCTTTTAAGGTCTAGTCTAGAGTCTGCCCGACTTTACTTTCAACACAAACCCTCTTATCCTGCAGCGGATGTTATTCATTCTGATGATTCTCAGGAGTGGTGTAAGACCTCTGGTTACCATGCAGATCCTCAACAATGGCAAGAAACATATGATTTCAGGCCAGGGCTCACTCCTTCGGAACCCACCACTGAAATTGAATTCCCTCCTGCTGGTTTGGCTGACATATTCTCTTTGCTTGGTAGAGCAGCAAGGGATATATTGGACGCCATCAGCTTCTATTTAAATCTGCGTAGCTCTCCATTTACTGAAATACTTGATAATGTTCCACTCAGAAATCGAGAAACATCATCCTCTGTATTATCCGTCTGGTGTCATTCCAGGCCATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E315748" ref_strand="+" ref_description="SGN-E315748 [cTOA-26-I14]">
      <seq>ttggattcctcctctctcgagattgagacctacatgcttggtgaaaccggttgcagtgcaacgtctgcctatgtgggtatggtctcgagttaatatatttcagcacaagcagtgcaaaatctagaggatttcatggcaggcaatggcctgccagctctgggtcgtgtgaagctcagtgatttggtaccattggaaggtcttccttctgattcgtataaattatctgtctcaactttgtcacagtcattggctcagtattcagctgccattatacagctatccacaagtgatggagctcttttaaggtctagtctagagtctgcccgactttactttcaacacaaaccctcttatcctgcagcggatgttattcattctgatgattctcaggagtggtgtaagacctctggttaccatgcagatcctcaacaatggcaagaaacatatgatttcaggccagggctcactccttcggaacccaccactgaaattgaattccctcctgctggtttggctgacatattctctttgcttggtagagcagcaagggatatattggacgccatcagcttctatttaaatctgcgtagctctccatttactgaaatacttgataatgttccactcagaaatcgagaaacatcatcctctgtattatccgtctgttgtcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="19559" stop="17944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19259" g_stop="19187" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19186" i_stop="18843" i_length="344">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18842" g_stop="18244" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="672" r_length="599" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E315748" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19259" e_stop="19187"/>
          <exon e_start="18842" e_stop="18244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATTCCTCCTCTCTCGAGATTGAGACCTACATGCTTGGTGAAACCGGTTGCAGTGCAACGTCTGCCTATGGTGCGTTAAAAAGCCTCAAATTTTTCATCTTCAACCTCAACATTTTTCCTTATTATGCTCCTAAACTTGTCACATATTTATAGCTAAGTTTTTTTTTTTTTTTAATAGGCGATGCCTAGTAGTTGGGTTTAAGGTTTAGTGATGTTAGTATATTGATTGCTAATAGTGTTATTTGTCTGTTTAATATACAGAAATTAAACTCAAATTATTGAGTATAGAATGAAAAAGTTGGTCCAGTAGGGATATTGATACTGAGGGTTCATATAGTCGACCTCAATTGTGAAAGTTGGTTTTTTTATTTCATTTTAATTTCTGAATTGACTGGTTTTCTATTTGTCATTCAGTGGGTATGGTCTCGAGTTAATATATTTCAGCACAAGCAGTGCAAAATCTAGAGGATTTCATGGCAGGCAATGGCCTGCCAGCTCTGGGTCGTGTGAAGCTCAGTGATTTGGTACCATTGGAAGGTCTTCCTTCTGATTCGTATAAATTATCTGTCTCAACTTTGTCACAGTCATTGGCTCAGTATTCAGCTGCCATTATACAGCTATCCACAAGTGATGGAGCTCTTTTAAGGTCTAGTCTAGAGTCTGCCCGACTTTACTTTCAACACAAACCCTCTTATCCTGCAGCGGATGTTATTCATTCTGATGATTCTCAGGAGTGGTGTAAGACCTCTGGTTACCATGCAGATCCTCAACAATGGCAAGAAACATATGATTTCAGGCCAGGGCTCACTCCTTCGGAACCCACCACTGAAATTGAATTCCCTCCTGCTGGTTTGGCTGACATATTCTCTTTGCTTGGTAGAGCAGCAAGGGATATATTGGACGCCATCAGCTTCTATTTAAATCTGCGTAGCTCTCCATTTACTGAAATACTTGATAATGTTCCACTCAGAAATCGAGAAACATCATCCTCTGTATTATCCGTCTGTTGTCAT</genome_strand>
        <mrna_strand>TTGGATTCCTCCTCTCTCGAGATTGAGACCTACATGCTTGGTGAAACCGGTTGCAGTGCAACGTCTGCCTATG........................................................................................................................................................................................................................................................................................................................................................TGGGTATGGTCTCGAGTTAATATATTTCAGCACAAGCAGTGCAAAATCTAGAGGATTTCATGGCAGGCAATGGCCTGCCAGCTCTGGGTCGTGTGAAGCTCAGTGATTTGGTACCATTGGAAGGTCTTCCTTCTGATTCGTATAAATTATCTGTCTCAACTTTGTCACAGTCATTGGCTCAGTATTCAGCTGCCATTATACAGCTATCCACAAGTGATGGAGCTCTTTTAAGGTCTAGTCTAGAGTCTGCCCGACTTTACTTTCAACACAAACCCTCTTATCCTGCAGCGGATGTTATTCATTCTGATGATTCTCAGGAGTGGTGTAAGACCTCTGGTTACCATGCAGATCCTCAACAATGGCAAGAAACATATGATTTCAGGCCAGGGCTCACTCCTTCGGAACCCACCACTGAAATTGAATTCCCTCCTGCTGGTTTGGCTGACATATTCTCTTTGCTTGGTAGAGCAGCAAGGGATATATTGGACGCCATCAGCTTCTATTTAAATCTGCGTAGCTCTCCATTTACTGAAATACTTGATAATGTTCCACTCAGAAATCGAGAAACATCATCCTCTGTATTATCCGTCTGTTGTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E333903" ref_strand="+" ref_description="SGN-E333903 [cTOD-24-K8]">
      <seq>tctctcgagattgagacctacatgcttggtgaaaccggttgcagtgcaacgtctgcctatggggtatggtctcgagttaatatatttcagcacaagcagtgcaaaatctagaggatttcatggcaggcaatggcctgccagctctgggtcgtgtgaagctcagtgatttggtaccattggaaggtcttccttctgattcgtataaattatctgtctcaactttgtcacagtcattggctcagtattcagctgccattatacagctatccacaagtgatggagctcttttaaggtctagtctagagtctgcccgactttactttcaacacaaaccctcttatcctgcagcggatgttattcattctgatgattctcaggagtggtgtaagacctctggttaccatgcagatcctcaacaatggcaagaaacatatgatttcaggccagggctcactccttcggaacccaccactgaaattgaattccctcctgctggtttggctgacatattctctttgcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="19547" stop="18081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19247" g_stop="19187" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19186" i_stop="18843" i_length="344">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18842" g_stop="18381" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="522" r_length="461" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E333903" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19247" e_stop="19187"/>
          <exon e_start="18842" e_stop="18381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCGAGATTGAGACCTACATGCTTGGTGAAACCGGTTGCAGTGCAACGTCTGCCTATGGTGCGTTAAAAAGCCTCAAATTTTTCATCTTCAACCTCAACATTTTTCCTTATTATGCTCCTAAACTTGTCACATATTTATAGCTAAGTTTTTTTTTTTTTTTAATAGGCGATGCCTAGTAGTTGGGTTTAAGGTTTAGTGATGTTAGTATATTGATTGCTAATAGTGTTATTTGTCTGTTTAATATACAGAAATTAAACTCAAATTATTGAGTATAGAATGAAAAAGTTGGTCCAGTAGGGATATTGATACTGAGGGTTCATATAGTCGACCTCAATTGTGAAAGTTGGTTTTTTTATTTCATTTTAATTTCTGAATTGACTGGTTTTCTATTTGTCATTCAGTGGGTATGGTCTCGAGTTAATATATTTCAGCACAAGCAGTGCAAAATCTAGAGGATTTCATGGCAGGCAATGGCCTGCCAGCTCTGGGTCGTGTGAAGCTCAGTGATTTGGTACCATTGGAAGGTCTTCCTTCTGATTCGTATAAATTATCTGTCTCAACTTTGTCACAGTCATTGGCTCAGTATTCAGCTGCCATTATACAGCTATCCACAAGTGATGGAGCTCTTTTAAGGTCTAGTCTAGAGTCTGCCCGACTTTACTTTCAACACAAACCCTCTTATCCTGCAGCGGATGTTATTCATTCTGATGATTCTCAGGAGTGGTGTAAGACCTCTGGTTACCATGCAGATCCTCAACAATGGCAAGAAACATATGATTTCAGGCCAGGGCTCACTCCTTCGGAACCCACCACTGAAATTGAATTCCCTCCTGCTGGTTTGGCTGACATATTCTCTTTGCTTG</genome_strand>
        <mrna_strand>TCTCTCGAGATTGAGACCTACATGCTTGGTGAAACCGGTTGCAGTGCAACGTCTGCCTATG........................................................................................................................................................................................................................................................................................................................................................-GGGTATGGTCTCGAGTTAATATATTTCAGCACAAGCAGTGCAAAATCTAGAGGATTTCATGGCAGGCAATGGCCTGCCAGCTCTGGGTCGTGTGAAGCTCAGTGATTTGGTACCATTGGAAGGTCTTCCTTCTGATTCGTATAAATTATCTGTCTCAACTTTGTCACAGTCATTGGCTCAGTATTCAGCTGCCATTATACAGCTATCCACAAGTGATGGAGCTCTTTTAAGGTCTAGTCTAGAGTCTGCCCGACTTTACTTTCAACACAAACCCTCTTATCCTGCAGCGGATGTTATTCATTCTGATGATTCTCAGGAGTGGTGTAAGACCTCTGGTTACCATGCAGATCCTCAACAATGGCAAGAAACATATGATTTCAGGCCAGGGCTCACTCCTTCGGAACCCACCACTGAAATTGAATTCCCTCCTGCTGGTTTGGCTGACATATTCTCTTTGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E395417" ref_strand="+" ref_description="SGN-E395417 [TUS-16-G22]">
      <seq>atggccccaataatttctgtctccggcgatcagctgaacgacggtactggtcctcccttttcgacttgtgcctttttttcgctctattcctctcgcatttggattcctcctctctcgagattgagacctacatgcttggtgaaaccggttgcagtgcaacgtctgcctatgtgggtatggtctcgagttaatatatttcagcacaagcagtgcaaaatctagaggatttcatggcaggcaatggcctgccagctctgggtcgtgtgaagctcagtgatttggtaccattggaaggtcttccttctgattcgtataaattatctgtctcaactttgtcacagtcattggctcagtattcagctgccattatacagctatccacaagtgatggagctcttttaaggtctagtctagagtctgcccgactttactttcaacacaaaccctcttatcctgcagcggatgttattcattctgatgattctcaggagtggtgtaagacctctggttaccatgcagatcctcaacaatggcaagaaacatatgatttcaggccagggctcactccttcggaaccaccactgaaattgaattccctcctgctggtttggctgactttttctctttgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="19657" stop="18082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19357" g_stop="19187" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19186" i_stop="18843" i_length="344">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18842" g_stop="18382" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="631" r_length="460" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E395417" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19357" e_stop="19187"/>
          <exon e_start="18842" e_stop="18382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCCCCAATAATTTCTGTCTCCGGCGATCAGCTGAACGACGGTACTGGTCCTCCCTTTTCGACTTGTGCCTTTTTTTCGCTCTATTCCTCTCGCATTTGGATTCCTCCTCTCTCGAGATTGAGACCTACATGCTTGGTGAAACCGGTTGCAGTGCAACGTCTGCCTATGGTGCGTTAAAAAGCCTCAAATTTTTCATCTTCAACCTCAACATTTTTCCTTATTATGCTCCTAAACTTGTCACATATTTATAGCTAAGTTTTTTTTTTTTTTTAATAGGCGATGCCTAGTAGTTGGGTTTAAGGTTTAGTGATGTTAGTATATTGATTGCTAATAGTGTTATTTGTCTGTTTAATATACAGAAATTAAACTCAAATTATTGAGTATAGAATGAAAAAGTTGGTCCAGTAGGGATATTGATACTGAGGGTTCATATAGTCGACCTCAATTGTGAAAGTTGGTTTTTTTATTTCATTTTAATTTCTGAATTGACTGGTTTTCTATTTGTCATTCAGTGGGTATGGTCTCGAGTTAATATATTTCAGCACAAGCAGTGCAAAATCTAGAGGATTTCATGGCAGGCAATGGCCTGCCAGCTCTGGGTCGTGTGAAGCTCAGTGATTTGGTACCATTGGAAGGTCTTCCTTCTGATTCGTATAAATTATCTGTCTCAACTTTGTCACAGTCATTGGCTCAGTATTCAGCTGCCATTATACAGCTATCCACAAGTGATGGAGCTCTTTTAAGGTCTAGTCTAGAGTCTGCCCGACTTTACTTTCAACACAAACCCTCTTATCCTGCAGCGGATGTTATTCATTCTGATGATTCTCAGGAGTGGTGTAAGACCTCTGGTTACCATGCAGATCCTCAACAATGGCAAGAAACATATGATTTCAGGCCAGGGCTCACTCCTTCGGAACCCACCACTGAAATTGAATTCCCTCCTGCTGGTTTGGCTGACATATTCTCTTTGCTT</genome_strand>
        <mrna_strand>ATGGCCCCAATAATTTCTGTCTCCGGCGATCAGCTGAACGACGGTACTGGTCCTCCCTTTTCGACTTGTGCCTTTTTTTCGCTCTATTCCTCTCGCATTTGGATTCCTCCTCTCTCGAGATTGAGACCTACATGCTTGGTGAAACCGGTTGCAGTGCAACGTCTGCCTATG........................................................................................................................................................................................................................................................................................................................................................TGGGTATGGTCTCGAGTTAATATATTTCAGCACAAGCAGTGCAAAATCTAGAGGATTTCATGGCAGGCAATGGCCTGCCAGCTCTGGGTCGTGTGAAGCTCAGTGATTTGGTACCATTGGAAGGTCTTCCTTCTGATTCGTATAAATTATCTGTCTCAACTTTGTCACAGTCATTGGCTCAGTATTCAGCTGCCATTATACAGCTATCCACAAGTGATGGAGCTCTTTTAAGGTCTAGTCTAGAGTCTGCCCGACTTTACTTTCAACACAAACCCTCTTATCCTGCAGCGGATGTTATTCATTCTGATGATTCTCAGGAGTGGTGTAAGACCTCTGGTTACCATGCAGATCCTCAACAATGGCAAGAAACATATGATTTCAGGCCAGGGCTCACTCCTTCGGAA-CCACCACTGAAATTGAATTCCCTCCTGCTGGTTTGGCTGACTTTTTCTCTTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E205788" ref_strand="+" ref_description="SGN-E205788 [cLEC-20-G3]">
      <seq>tggccccaataatttctgtctccggcgatcagctgaacgacggtactggtcctcccttttcgacttgtgcctttttttcgctctattcctctcgcatttggattcctcctctctcgagattgagacctacatgcttggtgaaaccggttgcagtgcaacgtctgcctatgtgggtatggtctcgagttaatatatttcagcacaagcagtgcaaaatctagaggatttcatggcaggcaatggcctgccagctctgggtcgtgtgaagctcagtgatttggtaccattggaaggtcttccttctgattcgtataaattatctgtctcaactttgtcacagtcattggctcagtattcagctgccattatacagctatccacaagtgatggagctcttttaaggtctagtctagagtctgcccgactttactttcaacacaaaccctcttatcctgcagcggatgttattcattctgatgattctcaggagtggtgtaagacctctggttaccatgcagatcctcaacaatggcaagaaacatatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="19656" stop="18166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19356" g_stop="19187" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19186" i_stop="18843" i_length="344">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18842" g_stop="18466" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="547" r_length="377" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E205788" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19356" e_stop="19187"/>
          <exon e_start="18842" e_stop="18466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCCCCAATAATTTCTGTCTCCGGCGATCAGCTGAACGACGGTACTGGTCCTCCCTTTTCGACTTGTGCCTTTTTTTCGCTCTATTCCTCTCGCATTTGGATTCCTCCTCTCTCGAGATTGAGACCTACATGCTTGGTGAAACCGGTTGCAGTGCAACGTCTGCCTATGGTGCGTTAAAAAGCCTCAAATTTTTCATCTTCAACCTCAACATTTTTCCTTATTATGCTCCTAAACTTGTCACATATTTATAGCTAAGTTTTTTTTTTTTTTTAATAGGCGATGCCTAGTAGTTGGGTTTAAGGTTTAGTGATGTTAGTATATTGATTGCTAATAGTGTTATTTGTCTGTTTAATATACAGAAATTAAACTCAAATTATTGAGTATAGAATGAAAAAGTTGGTCCAGTAGGGATATTGATACTGAGGGTTCATATAGTCGACCTCAATTGTGAAAGTTGGTTTTTTTATTTCATTTTAATTTCTGAATTGACTGGTTTTCTATTTGTCATTCAGTGGGTATGGTCTCGAGTTAATATATTTCAGCACAAGCAGTGCAAAATCTAGAGGATTTCATGGCAGGCAATGGCCTGCCAGCTCTGGGTCGTGTGAAGCTCAGTGATTTGGTACCATTGGAAGGTCTTCCTTCTGATTCGTATAAATTATCTGTCTCAACTTTGTCACAGTCATTGGCTCAGTATTCAGCTGCCATTATACAGCTATCCACAAGTGATGGAGCTCTTTTAAGGTCTAGTCTAGAGTCTGCCCGACTTTACTTTCAACACAAACCCTCTTATCCTGCAGCGGATGTTATTCATTCTGATGATTCTCAGGAGTGGTGTAAGACCTCTGGTTACCATGCAGATCCTCAACAATGGCAAGAAACATATGAT</genome_strand>
        <mrna_strand>TGGCCCCAATAATTTCTGTCTCCGGCGATCAGCTGAACGACGGTACTGGTCCTCCCTTTTCGACTTGTGCCTTTTTTTCGCTCTATTCCTCTCGCATTTGGATTCCTCCTCTCTCGAGATTGAGACCTACATGCTTGGTGAAACCGGTTGCAGTGCAACGTCTGCCTATG........................................................................................................................................................................................................................................................................................................................................................TGGGTATGGTCTCGAGTTAATATATTTCAGCACAAGCAGTGCAAAATCTAGAGGATTTCATGGCAGGCAATGGCCTGCCAGCTCTGGGTCGTGTGAAGCTCAGTGATTTGGTACCATTGGAAGGTCTTCCTTCTGATTCGTATAAATTATCTGTCTCAACTTTGTCACAGTCATTGGCTCAGTATTCAGCTGCCATTATACAGCTATCCACAAGTGATGGAGCTCTTTTAAGGTCTAGTCTAGAGTCTGCCCGACTTTACTTTCAACACAAACCCTCTTATCCTGCAGCGGATGTTATTCATTCTGATGATTCTCAGGAGTGGTGTAAGACCTCTGGTTACCATGCAGATCCTCAACAATGGCAAGAAACATATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E543473" ref_strand="-" ref_description="SGN-E543473 [TUS-65-E23]">
      <seq>ttgaacttgatatcattaccaaagatgaagctctaaaagttgcagtgcaagaacagagagctgcctctgccacaatggtgggctctacggctggggattcttcacctcctgatataatgcttccaaaggacaaaatagagcctcttgggcttcacattcaacaaattcccttggaagatggcattggtggccctgatataaactcttcacctgtggaagctacatttaacttggaagaaagtgggatcaactttgatgcaagtgttgaacatcaattcattccaagcttcaatgggcaacctccggctaatcaagacgaccatcgtgataagtcagcatacgagaatctctcagctcttaggaaaggctctgatgaagacatcagcttttccttgcagttgggtggtcatgaatccaagagaagacgttcagagcctccaccaagcgcagatgaaccagaatgattttctccttttatctgctggtacatttaactttgaggtcttccatggaaaggaaatgcattttgtgtttggttctaaaacaagaaagaggtccaatttggtttttgaggtgctaaattttcatcatatggccattgatggcaacctgtgtatgaagagttctgtatttgaacatctcagtagtgcaaaatccaattgtaaaatacatgcaagctaaaaatgaggctgctttcttgagctattttgattcatggctccatgcagtagacataaaaatttgcctttgatgtatatttatgctggatatgttaagaaaccacagtgtttatatatatatatatatgtattgcaagtgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="21782" stop="19397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21482" g_stop="21444" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21443" i_stop="20478" i_length="966">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20477" g_stop="19702" g_length="776"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="816" r_length="777" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="820" polyA_stop="833"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E543473" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543473" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="21482" e_stop="21444"/>
          <exon e_start="20477" e_stop="19702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAACTTGATATCATTACCAAAGATGAAGCTCTAAAAGGTTTGTGGTCCTCAGCACTTGATTTCTGCCGATAAAGCTAGCTGTTTTTTTCTTTTTTGGTTACATGCACAAAAAATAAATCTCCAATGTGTCCCCCCCTAAATTTATCTTTTACCACTGTGCTTCCTAATTTGTTTATCGGGCATAGGGCTTACAGTTAGTTAGTGATGTTGAGACTTGAGAGTGATACATCCCAAGTTTTTTCAGAGGGGTGGTTGTAGAAGGAAAAACATGTGTGATTTAGAGTGGACGAGAAGCTAAGAAGCTCAATGGATGTCAAGATCTTTAGAATCGTACAGTGAGTTGTTAGATCTAGCTATACTAAATTGGCCTATTAGAAGCCACTTGACAATTGGCTGATTATCTTTCTCTAAGTGAGCAAGTTTCATTGGTTGATATTTTTATCAAAACCATCTCTTCTAGATTTAGTAGTATGTAGTTTGACATTTGTTGAAAAATTTGTGAATGCAAGGAGTTCCAAGAAGGCATGATAAATTGCTTTGTAGAATTAGTTTATTATTATCCCACTGTTTGCACATTAGTTCTCAGGCATCCAGTTGGTCTGTTTAGCTTCATAGTTCAGAAGCACGACTTGTCCTCCTTGAAATGACATGCTCAATTTCCTCTACTGACGTTATTTGGGTAGACGGTATTCCTTTCTTCATTTGTATAATGTTTGTAGGATAGATAAAGCAAGTGAATTCCATCCCTTCTGCTAGCCGTTAGTATTAGCACCACAAGATGGAATAGAACTAAGCTGACTCCCGTTCTTAATCCCAATCCATGGAGACAAAATAATGTCTATTCAAAGTGATGTAGGTTCTGTTGCTTTAAATCCTGTCACATCTGTATGACTTACTCCGACAAATTTACCATTTCATCAAAGTCTCCTCTTTTTCCCGATAAAAAGATCTTCAATTCTTTGAGGGTATGTAATAACCTTGTCTGTGTCTATCACTGGTGTAGTTGCAGTGCAAGAACAGAGAGCTGCCTCTGCCACAATGGTGGGCTCTACGGCTGGGGATTCTTCACCTCCTGATATAATGCTTCCAAAGGACAAAATAGAGCCTCTTGGGCTTCACATTCAACAAATTCCCTTGGAAGATGGCATTGGTGGCCCTGATATAAACTCTTCACCTGTGGAAGCTACATTTAACTTGGAAGAAAGTGGGATCAACTTTGATGCAAGTGTTGAACATCAATTCATTCCAAGCTTCAATGGGCAACCTCCGGCTAATCAAGACGACCATCGTGATAAGTCAGCATACGAGAATCTCTCAGCTCTTAGGAAAGGCTCTGATGAAGACATCAGCTTTTCCTTGCAGTTGGGTGGTCATGAATCCAAGAGAAGACGTTCAGAGCCTCCACCAAGCGCAGATGAACCAGAATGATTTTCTCCTTTTATCTGCTGGTACATTTAACTTTGAGGTCTTCCATGGAAAGGAAATGCATTTTGTGTTTGGTTCTAAAACAAGAAAGAGGTCCAATTTGGTTTTTGAGGTGCTAAATTTTCATCATATGGCCATTGATGGCAACCTGTGTATGAAGAGTTCTGTATTTGAACATCTCAGTAGTGCAAAATCCAATTGTAAAATACATGCAAGCTAAAAATGAGGCTGCTTTCTTGAGCTATTTTGATTCATGGCTCCATGCAGTAGACATAAAAATTTGCCTTTGATGTATATTTATGCTGGATATGTTAAGAAACCA-AGTGTTTATATATATATATATATGTATTGCAA</genome_strand>
        <mrna_strand>TTGAACTTGATATCATTACCAAAGATGAAGCTCTAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGTGCAAGAACAGAGAGCTGCCTCTGCCACAATGGTGGGCTCTACGGCTGGGGATTCTTCACCTCCTGATATAATGCTTCCAAAGGACAAAATAGAGCCTCTTGGGCTTCACATTCAACAAATTCCCTTGGAAGATGGCATTGGTGGCCCTGATATAAACTCTTCACCTGTGGAAGCTACATTTAACTTGGAAGAAAGTGGGATCAACTTTGATGCAAGTGTTGAACATCAATTCATTCCAAGCTTCAATGGGCAACCTCCGGCTAATCAAGACGACCATCGTGATAAGTCAGCATACGAGAATCTCTCAGCTCTTAGGAAAGGCTCTGATGAAGACATCAGCTTTTCCTTGCAGTTGGGTGGTCATGAATCCAAGAGAAGACGTTCAGAGCCTCCACCAAGCGCAGATGAACCAGAATGATTTTCTCCTTTTATCTGCTGGTACATTTAACTTTGAGGTCTTCCATGGAAAGGAAATGCATTTTGTGTTTGGTTCTAAAACAAGAAAGAGGTCCAATTTGGTTTTTGAGGTGCTAAATTTTCATCATATGGCCATTGATGGCAACCTGTGTATGAAGAGTTCTGTATTTGAACATCTCAGTAGTGCAAAATCCAATTGTAAAATACATGCAAGCTAAAAATGAGGCTGCTTTCTTGAGCTATTTTGATTCATGGCTCCATGCAGTAGACATAAAAATTTGCCTTTGATGTATATTTATGCTGGATATGTTAAGAAACCACAGTGTTTATATATATATATATATGTATTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E329695" ref_strand="+" ref_description="SGN-E329695 [cTOD-3-F4]">
      <seq>gtttttttttcacttgcaatacatatatatatatatataaacacttggtttcttaacatatccagcataaatatacatcaaaggcaaatttttatgtctactgcatggagccatgaatcaaaatagctcaagaaagcagcctcatttttagcttgcatgtattttacaattggattttgcactactgagatgttcaaatacagaactcttcatacacaggttgccatcaatggccatatgatgaaaatttagcacctcaaaaaccaaattggacctctttcttgttttagaaccaaacacaaaatgcatttcctttccatggaagacctcaaagttaaatgtaccagcagataaaaggagaaaatcattctggttcatctgcgcttggtggaggctctgaacgtcttctcttggattcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="19397" stop="20409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19702" g_stop="20109" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="421" r_length="408" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E329695" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19702" e_stop="20109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAATACATATATATATATATATAAACACTTGGTTTCTTAACATATCCAGCATAAATATACATCAAAGGCAAATTTTTATGTCTACTGCATGGAGCCATGAATCAAAATAGCTCAAGAAAGCAGCCTCATTTTTAGCTTGCATGTATTTTACAATTGGATTTTGCACTACTGAGATGTTCAAATACAGAACTCTTCATACACAGGTTGCCATCAATGGCCATATGATGAAAATTTAGCACCTCAAAAACCAAATTGGACCTCTTTCTTGTTTTAGAACCAAACACAAAATGCATTTCCTTTCCATGGAAGACCTCAAAGTTAAATGTACCAGCAGATAAAAGGAGAAAATCATTCTGGTTCATCTGCGCTTGGTGGAGGCTCTGAACGTCTTCTCTTGGATTCATG</genome_strand>
        <mrna_strand>TTGCAATACATATATATATATATATAAACACTTGGTTTCTTAACATATCCAGCATAAATATACATCAAAGGCAAATTTTTATGTCTACTGCATGGAGCCATGAATCAAAATAGCTCAAGAAAGCAGCCTCATTTTTAGCTTGCATGTATTTTACAATTGGATTTTGCACTACTGAGATGTTCAAATACAGAACTCTTCATACACAGGTTGCCATCAATGGCCATATGATGAAAATTTAGCACCTCAAAAACCAAATTGGACCTCTTTCTTGTTTTAGAACCAAACACAAAATGCATTTCCTTTCCATGGAAGACCTCAAAGTTAAATGTACCAGCAGATAAAAGGAGAAAATCATTCTGGTTCATCTGCGCTTGGTGGAGGCTCTGAACGTCTTCTCTTGGATTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E304583" ref_strand="+" ref_description="SGN-E304583 [cLEX-11-N1]">
      <seq>atatatatatatatataaacacttggtttcttaacatatccagcataaatatacatcaaaggcaaatttttatgtctactgcatggagccatgaatcaaaatagctcaagaaagcagcctcatttttagcttgcatgtattttacaattggattttgcactactgagatgttcaaatacagaactcttcatacacaggttgccatcaatggccatatgatgaaaatttagcacctcaaaaaccaaattggacctctttcttgttttagaaccaaacacaaaatgcatttcctttccatggaagacctcaaagttaaatgtaccagcagataaaaggagaaaatcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="19411" stop="20358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19711" g_stop="20058" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E304583" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19711" e_stop="20058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATATATATATATATAAACACTTGGTTTCTTAACATATCCAGCATAAATATACATCAAAGGCAAATTTTTATGTCTACTGCATGGAGCCATGAATCAAAATAGCTCAAGAAAGCAGCCTCATTTTTAGCTTGCATGTATTTTACAATTGGATTTTGCACTACTGAGATGTTCAAATACAGAACTCTTCATACACAGGTTGCCATCAATGGCCATATGATGAAAATTTAGCACCTCAAAAACCAAATTGGACCTCTTTCTTGTTTTAGAACCAAACACAAAATGCATTTCCTTTCCATGGAAGACCTCAAAGTTAAATGTACCAGCAGATAAAAGGAGAAAATCATTC</genome_strand>
        <mrna_strand>ATATATATATATATATAAACACTTGGTTTCTTAACATATCCAGCATAAATATACATCAAAGGCAAATTTTTATGTCTACTGCATGGAGCCATGAATCAAAATAGCTCAAGAAAGCAGCCTCATTTTTAGCTTGCATGTATTTTACAATTGGATTTTGCACTACTGAGATGTTCAAATACAGAACTCTTCATACACAGGTTGCCATCAATGGCCATATGATGAAAATTTAGCACCTCAAAAACCAAATTGGACCTCTTTCTTGTTTTAGAACCAAACACAAAATGCATTTCCTTTCCATGGAAGACCTCAAAGTTAAATGTACCAGCAGATAAAAGGAGAAAATCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E350539" ref_strand="+" ref_description="SGN-E350539 [cTOS-5-K10]">
      <seq>ctcttcacctgtggaagctacatttaacttggaagaaagtgggatcaactttgatgcaagtgttgaacatcaattcattccaagcttcaatgggcaacctccggctaatcaagacgaccatcgtgataagtcagcatacgagaatctctcagctcttaggaaaggctctgatgaagacatcagcttttccttgcagttgggtggtcatgaatccaagagaagacgttcagagcctccaccaagcgcagatgaaccagaatgattttctccttttatctgctggtacatttaactttgaggtcttccatggaaaggaaatgcattttgtgtttggttctaaaacaagaaagaggtccaatttggtttttgaggtgctaaattttcatcatatggccattgatggcaacctgtgtatgaagagttctgtatttgaacatctcagtagtgcaaaatccaattgtaaaatacatgcaagctaaaaatgaagctgctttcttgagctattttgattcatggctccatgcagtagacataaaaatttgcctttgatggatatttatgctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="20614" stop="19450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20314" g_stop="19750" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="565" r_length="565" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E350539" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20314" e_stop="19750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCACCTGTGGAAGCTACATTTAACTTGGAAGAAAGTGGGATCAACTTTGATGCAAGTGTTGAACATCAATTCATTCCAAGCTTCAATGGGCAACCTCCGGCTAATCAAGACGACCATCGTGATAAGTCAGCATACGAGAATCTCTCAGCTCTTAGGAAAGGCTCTGATGAAGACATCAGCTTTTCCTTGCAGTTGGGTGGTCATGAATCCAAGAGAAGACGTTCAGAGCCTCCACCAAGCGCAGATGAACCAGAATGATTTTCTCCTTTTATCTGCTGGTACATTTAACTTTGAGGTCTTCCATGGAAAGGAAATGCATTTTGTGTTTGGTTCTAAAACAAGAAAGAGGTCCAATTTGGTTTTTGAGGTGCTAAATTTTCATCATATGGCCATTGATGGCAACCTGTGTATGAAGAGTTCTGTATTTGAACATCTCAGTAGTGCAAAATCCAATTGTAAAATACATGCAAGCTAAAAATGAGGCTGCTTTCTTGAGCTATTTTGATTCATGGCTCCATGCAGTAGACATAAAAATTTGCCTTTGATGTATATTTATGCTGG</genome_strand>
        <mrna_strand>CTCTTCACCTGTGGAAGCTACATTTAACTTGGAAGAAAGTGGGATCAACTTTGATGCAAGTGTTGAACATCAATTCATTCCAAGCTTCAATGGGCAACCTCCGGCTAATCAAGACGACCATCGTGATAAGTCAGCATACGAGAATCTCTCAGCTCTTAGGAAAGGCTCTGATGAAGACATCAGCTTTTCCTTGCAGTTGGGTGGTCATGAATCCAAGAGAAGACGTTCAGAGCCTCCACCAAGCGCAGATGAACCAGAATGATTTTCTCCTTTTATCTGCTGGTACATTTAACTTTGAGGTCTTCCATGGAAAGGAAATGCATTTTGTGTTTGGTTCTAAAACAAGAAAGAGGTCCAATTTGGTTTTTGAGGTGCTAAATTTTCATCATATGGCCATTGATGGCAACCTGTGTATGAAGAGTTCTGTATTTGAACATCTCAGTAGTGCAAAATCCAATTGTAAAATACATGCAAGCTAAAAATGAAGCTGCTTTCTTGAGCTATTTTGATTCATGGCTCCATGCAGTAGACATAAAAATTTGCCTTTGATGGATATTTATGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E745783" ref_strand="+" ref_description="SGN-E745783 [GI|47105087]">
      <seq>gataatactcttaacactggggcctctcatggcgtagcgtgggtttgactatgtctgcagccttttgttttcctttcccaatttcatatcgagtttaggctgcttgtgtgagaaatatggatcgagcaaggttaaataaaagaacccattgctcaggttcaacaccgtcagaggagtcagccttagatcttgaaaaatactgttgcagttattctaatcttccttcacttagtccaccaacacttcaaccttatgcatcggctggacaacactctgagagtaatgctgcatacttctcctggcctagtcggctaaatgatgctgctgaagagagagcaaactatttcggaaatcttcagaaaggggttttgccagaaactcttggccgattgcccgaggggcagcgagcaacaaccttacttgacctcatgactataagggcatctcatagcaaactcttgcgttgctacagtctcggtacagcaattggttttcgtattcgacgtggtgttttgactgatataccagcaatactagtgtttgtatcccggaaagttcacaaacaatggcttagtccaatccagtgtctacctactgctttagagggccctggaggtgtgtggtgtgaagtggatgtggtcgagttctcctattttggtgcaccagagccaacacccaaggagcagttgtacacagagatagtcgatgacctgcggggtagtgacccatatattggttcaggatctcaggtagcaagccaggagacatatggaaccttgggcgctattgtgaggagtctgtcaggcaatcgacaagttggtttcctaacaaaccggcatgttgctgttgacttagattacccaaatcaaaaaatgtttcatcctttacctccaacattaggacctggagtatatctgggttcagtggagagagctacatcttttatcagagacgacctttggtatggcatatttgctggcataaatccagagacatttgtcagggcagatggtgcattcattcctttcacagatgattttgatatgacctctgttactacttctgttaagggcataggggaaattggagatgtcaaaattatagatttgcaatctcctattagtagtctcatcggaaagcaagtgacgaaggtcggaagaagctctggattgactacaggcactgtcttggcatatgcccttgaatataatgatgagaaagggatttgcttcttgactgattttcttgtcaatggagaaaaccagcagacttttgaccttgaaggagacagtggaagtttaatcgttttgaagggtgagaatggggaaaaaccccgaccaattggttttatttggggtggaactgcaaataggggacggcttaaactaaaggtgggacaatctccagaaaattggactagtggagttgaccttgggcgtctgctcaatttccttgaacttgatatcattaccaaagatgaagctctaaaagttgcagtgcaagaacagagagctgcctctgccacaatggtgggctctacggctggggattcttcacctcctgatataatgcttccaaaggacaaaatagagcctcttgggcttcacattcaacaaattcccttggaagatggcattggtggccctgatataaactcttcacctgtggaagctacatttaacttggaagaaagtgggatcaactttgatgcaagtgttgaacatcaattcattccaagcttcaatgggcaacctccggctaatcaagacgaccatcgtgataagtcagcatacgagaatctctcagctcttaggaaaggctctgatgaagacatcagcttttccttgcagttgggtggtcatgaatccaagagaagacgttcagagcctccaccaagcgcagatgaaccagaatgattttctccttttatctgctggtacatttaactttgaggtcttccatggaaaggaaatgcattttgtgtttggttctaaaacaagaaagaggtccaatttggtttttgaggtgctaaattttcatcatatggccattgatggcaacctgtgtatgaagagttctgtatttgaacatctcagtagtgcaaaatccaattgtaaaatacatgcaagctaaaaatgaggctgctttcttgagcccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="26516" stop="19514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26217" g_stop="26106" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26105" i_stop="24991" i_length="1115">
            <donor d_prob="0.876" d_score="1.00"/>
            <acceptor a_prob="0.806" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24990" g_stop="24498" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="605" r_length="493" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24497" i_stop="24180" i_length="318">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24179" g_stop="24036" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="749" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24035" i_stop="23225" i_length="811">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23224" g_stop="22984" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="750" r_stop="990" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22983" i_stop="21945" i_length="1039">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21944" g_stop="21444" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="991" r_stop="1491" r_length="501" r_score="0.998"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="21443" i_stop="20478" i_length="966">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20477" g_stop="19816" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1492" r_stop="2153" r_length="662" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2158" polyA_stop="2172"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E745783" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2153</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26217" e_stop="26106"/>
          <exon e_start="24990" e_stop="24498"/>
          <exon e_start="24179" e_stop="24036"/>
          <exon e_start="23224" e_stop="22984"/>
          <exon e_start="21944" e_stop="21444"/>
          <exon e_start="20477" e_stop="19816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAATACTCTTAACACTGGGGCCTCTCATGGCGTAGCGTGGGTTTGACTATGTTTGCAGCCTTTTGTTTTCCTTTCCCAATTTCATATCGAGTTTAGGCTGCTTGTGTGAGGTAAAAAAACTCATCTTTTTTTTCCTCTCGAAGAATCCATCACTATTGCGATTGATCTTCCTTTTTTCACTTTCTCTTCTTCATGCAGAGATATCTTCACACGCCCATGTTTTTTTTTTGAATTTTCCAGGACCCCATTAATTTTGTTCCCTCAATTTGTACTGTGCACAATCGTTATCAAAATAAGTGCTTTTTCAATATTACTGTATTTATTATCCGTTTTTCCTCTCAAGTGTTTCTTTTCACTTTTCCTGTTCCTGGTTTTGTTGCTTTTCCTTGGTTATATATGTTTGGCTGAGAACTTTTTGTTTTTATTTCCGTTGTTGGAGAAATAGGATATATTGGACCTCACCTAGTTTGGGATTGAAGCATAGTTATTGACATATTGTTGATTGATTATGGTTGTTGTTGAACTTATTATCTATTTCTGTTGAGAAAGATACCTGTTTTCTTAGGGCCATGTTGATTGTTGAGGCAGTTTTATCATCTTATGAAGTTCATTCTTTCAGATTTTAAAGTAGCTGAGAGAAATGATGTGATGGATAATATTGTTGTAAGCTGTGGCTAACTAAAGGAAAAAAAAATCTTGCCATGTTTATCTGGTGCTATAACACATTTGATGGATCTAAATAGCTTTCAAATTGCTTACCATTCACTTTATACAGTCTATATTGTCATGACTTGTATTGGACTGGAACAATAAAGTTACTCAAGGCCAGCAGTGCTACAGTTTCTTTTTATCATTTGGATCTTTTCTACAGTCTTCCCTTTGGTGATGTTAACAATATTATATTCAGTGGATATGTGCGTTTTGGCTGTATGGATTTCCATTTTCATTTTTGAGACTGAGTTTACTGGATATTGTTAAATCTTTTAAATAACGTTGCAGCTTTAATTAAAGAAACATGTGAAACAAATTGGAATTTATGCTAAATTATTGCATTGGCCGTTCTCTGTGGTTCGAACACTGTTCTTCCTTTATCAGTTTTGACATAGATTACTAGAGCATACCTCTATGATAGCAAAGATCTTGTCCTTGAAAGTCAGACTTTAGGGTAAATTTTTGGTTTTCTTCCTGTTGGACTTTGAATAACAAGTTTGTCAACTATGAGCAGAAATATGGATCGAGCAAGGTTAAATAAAAGAACCCATTGCTCAGGTTCAACACCGTCAGAGGAGTCAGCCTTAGATCTTGAAAAATACTGTTGCAGTTATTCTAATCTTCCTTCACTTAGTCCACCAACACTTCAACCTTATGCATCGGCTGGACAACACTCTGAGAGTAATGCTGCATACTTCTCCTGGCCTAGTCGGCTAAATGATGCTGCTGAAGAGAGAGCAAACTATTTCGGAAATCTTCAGAAAGGGGTTTTGCCAGAAACTCTTGGCCGATTGCCCGAGGGGCAGCGAGCAACAACCTTACTTGACCTCATGACTATAAGGGCATCTCATAGCAAACTCTTGCGTTGCTACAGTCTCGGTACAGCAATTGGTTTTCGTATTCGACGTGGTGTTTTGACTGATATACCAGCAATACTAGTGTTTGTATCCCGGAAAGTTCACAAACAATGGCTTAGTCCAATCCAGTGTCTACCTACTGCTTTAGAGGTGATCAAAAAGATGCCTAATTATCTCTTATCCTATTTCTGTCACCCTCTCGTGAAAGATTTTCCTGAATTAGGACAAAAAAAGATGACGAGACTTTACTTCCTTATAAAAACAAAAGAGGATGAAATTTACTTCATTGATTTTCTTTTATCTTCTCTTGCTGTATTCCTCCCCGTCACTTTTCCTGATAGGGATTGTTCAATTGTGTGAGTTTAACTATTATTAGAGCCCAAAGAATCAACACTTGCTAACAAATGTTATTCTTGCATCATTTATTCCTTAGTTTTCTCTATGCTTAAATATGTTACTTATCATCAGGGCCCTGGAGGTGTGTGGTGTGAAGTGGATGTGGTCGAGTTCTCCTATTTTGGTGCACCAGAGCCAACACCCAAGGAGCAGTTGTACACAGAGATAGTCGATGACCTGCGGGGTAGTGACCCATATATTGGTTCAGGATCTCAGGTAGTTTGATGTTTATCACAACTTTTCACTCTAAAGATGCTTTGATTGAGTTTTGATGAGTTCATAAGAGAGTTGAAGTCTAAGTCGAGTCCTAGAAAATGTATCAATCAATTTTCAAATCACGTAGGTTGGGCAAATTTATGGCAAGTATTGCTATTTTCATGAGTCTTGTTAGTAGATCGACTCTAAGCATCTTGCATAAAAGTTAAAACAACTATTTGGGTGTGGCAGATCCTTGGAGCCATCTGCTTCTTTGCTTCTGAGCACATTTTGTATTTTTCTGAAGTGCTTATCATTCAGTATCGGAACTGGATTTATGCTTACCATATTTTTCTGAAACTATGCAGCAAGGACAACTTATGTTAGTCTTATGTACTAAAAGGCATCTACTAATTTTGAAAAGGTTGGAAGAAATGGATGATGATTTCCTGTAATGTGTCTAAGAGCCCATAAACTTTATATGTGCACAAAGACACTTTTTAACACCTTTCTCCATTGTTTGGTTAGACTCACATCCTTTCTGAGTGAATTGGTTAGTCATCAAATCAGTTGAGTTCCTTTGAAATCTCCAGCAAAGGTTAAATACATTATAAGGGACTCGGGGAAAGGTTTTGTTTGTCAACAAGTTAGTTGAGCTTCTTTGTTGAGATCTCCAGTCGTTTTTAATTGCATCTTAGGAAGATAAACAATTAAAGAGTCTGCAGAAGAAATCAGATGTAAACTACTTGTTTGGCTTGTCATTTCTTTCTTCCCTAAGGTTATCACTCTGATCGTACATGTTAATTCACCACATTTTATTGGAAACATCTAGGTAGCAAGCCAGGAGACATATGGAACCTTGGGCGCTATTGTGAGGAGTCTGTCAGGCAATCGACAAGTTGGTTTCCTAACAAACCGGCATGTTGCTGTTGACTTAGATTACCCAAATCAAAAAATGTTTCATCCTTTACCTCCAACATTAGGACCTGGAGTATATCTGGGTTCAGTGGAGAGAGCTACATCTTTTATCAGAGACGACCTTTGGTATGGCATATTTGCTGGCATAAATCCAGGTTAAGTGTTTCTTCTTACCTTCTTTACTGATTTATGTTGGAAGGAAGAATGTTCTGATGCTACAAATCATTATTGAAATTCGCTAAATGAATAGTGGATTATGATGTCTCGCCTTGTGCTTTAGTAAATATGTCTTGTGATACTAATCCTTTCTCCATCATCAATTCATATCTATCATTTCTTGGATGGAAGAAGGTTATGTAAAAACTTTGAGATCTCACTAATCAGATTCCATTGTATTGATCCATAAGGTGTTGTATGAAATGAAATATAATCAAATGATAAAAATGAGGTTGTCTTGCTAATGGGGGACAAAGTTAACTGATACCTGTGCTGATGGGAGGTAGCAGGTATCCTGTGGGATTAGTCGAGGTGTGTGCAAGCTGGCCCGCACACCACCTGTTATAAAAGAATATGTTAGACAATGTCTCTTTTGTCCCGTGTGATTATATTTTCATCCTGCCACCACAACATATCATGGATTAAATCAATGTTATCAAAGGCGAAAAGCGCAAAAAAGCTCCAAGGTCCGTGGGGACTTTAAGCTCAAAGCACAAATAAAGCTTGGGCTTTAATTAAAAAAGGCGCAAAAGGAGAAAAAAAACAAATATATATGTTTAGTCCAAAACTAATAATTATAAACATTATGACAAATATATGACCAATGAATTGAAATTTTTTTAGTTATGAAGTGAATTATCAATTGTTTCGTGTCAATTCTTCATAAGAGGTTCATTGTCAAGAAAGTTTGTCTTAGAACCTTGACGACGATACTGAAGCGCATATAAAGCGAGGCGAAGCGCTCAACACATTTTGAGCCTCGCTTTGGGGCTTAAGCGCGCCTTTGATCTGCAAGTGCAACCCATGCTAGAAATCTTCATTTTTGTTTCTTTCTATGTTTTTAGATAGATGAAAAGTTATTCTTTGCGCACTTGCATGTTACCTGCTCTGCTCCTGAAGGTTCTTAATTTGTTAGAGTTATTATTTTTCTTATAGCATTGGTAAGATTTCTAAATGTGGAATTGATTACTCGTGCAGAGACATTTGTCAGGGCAGATGGTGCATTCATTCCTTTCACAGATGATTTTGATATGACCTCTGTTACTACTTCTGTTAAGGGCATAGGGGAAATTGGAGATGTCAAAATTATAGATTTGCAATCTCCTATTAGTAGTCTCATCGGAAAGCAAGTGACGAAGGTCGGAAGAAGCTCTGGATTGACTACAGGCACTGTCTTGGCATATGCCCTTGAATATAATGATGAGAAAGGGATTTGCTTCTTGACTGATTTTCTTGTCAATGGAGAAAACCAGCAGACTTTTGACCTTGAAGGAGACAGTGGAAGTTTAATCGTTTTGAAGGGTGAGAATGGGGAAAAACCCCGACCAATTGGTATTATTTGGGGTGGAACTGCAAATAGGGGACGGCTTAAACTAAAGGTGGGACAATCTCCAGAAAATTGGACTAGTGGAGTTGACCTTGGGCGTCTGCTCAATTTCCTTGAACTTGATATCATTACCAAAGATGAAGCTCTAAAAGGTTTGTGGTCCTCAGCACTTGATTTCTGCCGATAAAGCTAGCTGTTTTTTTCTTTTTTGGTTACATGCACAAAAAATAAATCTCCAATGTGTCCCCCCCTAAATTTATCTTTTACCACTGTGCTTCCTAATTTGTTTATCGGGCATAGGGCTTACAGTTAGTTAGTGATGTTGAGACTTGAGAGTGATACATCCCAAGTTTTTTCAGAGGGGTGGTTGTAGAAGGAAAAACATGTGTGATTTAGAGTGGACGAGAAGCTAAGAAGCTCAATGGATGTCAAGATCTTTAGAATCGTACAGTGAGTTGTTAGATCTAGCTATACTAAATTGGCCTATTAGAAGCCACTTGACAATTGGCTGATTATCTTTCTCTAAGTGAGCAAGTTTCATTGGTTGATATTTTTATCAAAACCATCTCTTCTAGATTTAGTAGTATGTAGTTTGACATTTGTTGAAAAATTTGTGAATGCAAGGAGTTCCAAGAAGGCATGATAAATTGCTTTGTAGAATTAGTTTATTATTATCCCACTGTTTGCACATTAGTTCTCAGGCATCCAGTTGGTCTGTTTAGCTTCATAGTTCAGAAGCACGACTTGTCCTCCTTGAAATGACATGCTCAATTTCCTCTACTGACGTTATTTGGGTAGACGGTATTCCTTTCTTCATTTGTATAATGTTTGTAGGATAGATAAAGCAAGTGAATTCCATCCCTTCTGCTAGCCGTTAGTATTAGCACCACAAGATGGAATAGAACTAAGCTGACTCCCGTTCTTAATCCCAATCCATGGAGACAAAATAATGTCTATTCAAAGTGATGTAGGTTCTGTTGCTTTAAATCCTGTCACATCTGTATGACTTACTCCGACAAATTTACCATTTCATCAAAGTCTCCTCTTTTTCCCGATAAAAAGATCTTCAATTCTTTGAGGGTATGTAATAACCTTGTCTGTGTCTATCACTGGTGTAGTTGCAGTGCAAGAACAGAGAGCTGCCTCTGCCACAATGGTGGGCTCTACGGCTGGGGATTCTTCACCTCCTGATATAATGCTTCCAAAGGACAAAATAGAGCCTCTTGGGCTTCACATTCAACAAATTCCCTTGGAAGATGGCATTGGTGGCCCTGATATAAACTCTTCACCTGTGGAAGCTACATTTAACTTGGAAGAAAGTGGGATCAACTTTGATGCAAGTGTTGAACATCAATTCATTCCAAGCTTCAATGGGCAACCTCCGGCTAATCAAGACGACCATCGTGATAAGTCAGCATACGAGAATCTCTCAGCTCTTAGGAAAGGCTCTGATGAAGACATCAGCTTTTCCTTGCAGTTGGGTGGTCATGAATCCAAGAGAAGACGTTCAGAGCCTCCACCAAGCGCAGATGAACCAGAATGATTTTCTCCTTTTATCTGCTGGTACATTTAACTTTGAGGTCTTCCATGGAAAGGAAATGCATTTTGTGTTTGGTTCTAAAACAAGAAAGAGGTCCAATTTGGTTTTTGAGGTGCTAAATTTTCATCATATGGCCATTGATGGCAACCTGTGTATGAAGAGTTCTGTATTTGAACATCTCAGTAGTGCAAAATCCAATTGTAAAATACATGCAAGCTAAAAATGAGGCTGCTTTCTTGA</genome_strand>
        <mrna_strand>GATAATACTCTTAACACTGGGGCCTCTCATGGCGTAGCGTGGGTTTGACTATGTCTGCAGCCTTTTGTTTTCCTTTCCCAATTTCATATCGAGTTTAGGCTGCTTGTGTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATATGGATCGAGCAAGGTTAAATAAAAGAACCCATTGCTCAGGTTCAACACCGTCAGAGGAGTCAGCCTTAGATCTTGAAAAATACTGTTGCAGTTATTCTAATCTTCCTTCACTTAGTCCACCAACACTTCAACCTTATGCATCGGCTGGACAACACTCTGAGAGTAATGCTGCATACTTCTCCTGGCCTAGTCGGCTAAATGATGCTGCTGAAGAGAGAGCAAACTATTTCGGAAATCTTCAGAAAGGGGTTTTGCCAGAAACTCTTGGCCGATTGCCCGAGGGGCAGCGAGCAACAACCTTACTTGACCTCATGACTATAAGGGCATCTCATAGCAAACTCTTGCGTTGCTACAGTCTCGGTACAGCAATTGGTTTTCGTATTCGACGTGGTGTTTTGACTGATATACCAGCAATACTAGTGTTTGTATCCCGGAAAGTTCACAAACAATGGCTTAGTCCAATCCAGTGTCTACCTACTGCTTTAGAG..............................................................................................................................................................................................................................................................................................................................GGCCCTGGAGGTGTGTGGTGTGAAGTGGATGTGGTCGAGTTCTCCTATTTTGGTGCACCAGAGCCAACACCCAAGGAGCAGTTGTACACAGAGATAGTCGATGACCTGCGGGGTAGTGACCCATATATTGGTTCAGGATCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAAGCCAGGAGACATATGGAACCTTGGGCGCTATTGTGAGGAGTCTGTCAGGCAATCGACAAGTTGGTTTCCTAACAAACCGGCATGTTGCTGTTGACTTAGATTACCCAAATCAAAAAATGTTTCATCCTTTACCTCCAACATTAGGACCTGGAGTATATCTGGGTTCAGTGGAGAGAGCTACATCTTTTATCAGAGACGACCTTTGGTATGGCATATTTGCTGGCATAAATCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACATTTGTCAGGGCAGATGGTGCATTCATTCCTTTCACAGATGATTTTGATATGACCTCTGTTACTACTTCTGTTAAGGGCATAGGGGAAATTGGAGATGTCAAAATTATAGATTTGCAATCTCCTATTAGTAGTCTCATCGGAAAGCAAGTGACGAAGGTCGGAAGAAGCTCTGGATTGACTACAGGCACTGTCTTGGCATATGCCCTTGAATATAATGATGAGAAAGGGATTTGCTTCTTGACTGATTTTCTTGTCAATGGAGAAAACCAGCAGACTTTTGACCTTGAAGGAGACAGTGGAAGTTTAATCGTTTTGAAGGGTGAGAATGGGGAAAAACCCCGACCAATTGGTTTTATTTGGGGTGGAACTGCAAATAGGGGACGGCTTAAACTAAAGGTGGGACAATCTCCAGAAAATTGGACTAGTGGAGTTGACCTTGGGCGTCTGCTCAATTTCCTTGAACTTGATATCATTACCAAAGATGAAGCTCTAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGTGCAAGAACAGAGAGCTGCCTCTGCCACAATGGTGGGCTCTACGGCTGGGGATTCTTCACCTCCTGATATAATGCTTCCAAAGGACAAAATAGAGCCTCTTGGGCTTCACATTCAACAAATTCCCTTGGAAGATGGCATTGGTGGCCCTGATATAAACTCTTCACCTGTGGAAGCTACATTTAACTTGGAAGAAAGTGGGATCAACTTTGATGCAAGTGTTGAACATCAATTCATTCCAAGCTTCAATGGGCAACCTCCGGCTAATCAAGACGACCATCGTGATAAGTCAGCATACGAGAATCTCTCAGCTCTTAGGAAAGGCTCTGATGAAGACATCAGCTTTTCCTTGCAGTTGGGTGGTCATGAATCCAAGAGAAGACGTTCAGAGCCTCCACCAAGCGCAGATGAACCAGAATGATTTTCTCCTTTTATCTGCTGGTACATTTAACTTTGAGGTCTTCCATGGAAAGGAAATGCATTTTGTGTTTGGTTCTAAAACAAGAAAGAGGTCCAATTTGGTTTTTGAGGTGCTAAATTTTCATCATATGGCCATTGATGGCAACCTGTGTATGAAGAGTTCTGTATTTGAACATCTCAGTAGTGCAAAATCCAATTGTAAAATACATGCAAGCTAAAAATGAGGCTGCTTTCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E700120" ref_strand="+" ref_description="SGN-E700120 [FA12AG08]">
      <seq>gacacattggaagtttaatcgttttgaagggtgagaatggggaaaaaccccgaccaattggtattatttggggtggaactgcaaataggggacggcttaaactaaaggtgggacaatctccagaaaattggactagtggagttgaccttgggcgtctgctcaatttccttgaacttgatatcattaccaaagatgaagctctaaaagttgcagtgcaagaacagagagctgcctctgccacaatggtgggctctacggctggggattcttcacctcctgatataatgcttccaaaggacaaaatagagcctcttgggcttcacattcaacaaattcccttggaagatggcattggtggccctgatataaactcttcacctgtggaagctacatttaacttggaagaaagtgggatcaactttgatgcaagtgttgaacatcaattcattccaagcttcaatgggcaacctccggctaatcaagacgaccatcgtgataagtcagcatacgagaatctctcagctcttaggaaaggctctgatgaagacatcagcttttccttgcagttgggtggtcatgaatccaagagaagacgttcagagcctccaccaagcgcagatgaaccagaatgattttctccttttatctgctggtacatttaactttgaggtcttccatggaaaggaaatgcattttgtgtttggttctaaaacaagaaagaggtccaatttggtttttgaggtgctaaattttcatcatatggccattgatggcaacctgtgtatgaagagttctgtatttgaacatctcaatagtgcaaaatccaattgtaaaatacatgcaccctaaaaatgaggctgctttcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="21950" stop="19517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21650" g_stop="21444" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21443" i_stop="20478" i_length="966">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20477" g_stop="19817" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="868" r_length="661" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E700120" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>868</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21650" e_stop="21444"/>
          <exon e_start="20477" e_stop="19817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACAGTGGAAGTTTAATCGTTTTGAAGGGTGAGAATGGGGAAAAACCCCGACCAATTGGTATTATTTGGGGTGGAACTGCAAATAGGGGACGGCTTAAACTAAAGGTGGGACAATCTCCAGAAAATTGGACTAGTGGAGTTGACCTTGGGCGTCTGCTCAATTTCCTTGAACTTGATATCATTACCAAAGATGAAGCTCTAAAAGGTTTGTGGTCCTCAGCACTTGATTTCTGCCGATAAAGCTAGCTGTTTTTTTCTTTTTTGGTTACATGCACAAAAAATAAATCTCCAATGTGTCCCCCCCTAAATTTATCTTTTACCACTGTGCTTCCTAATTTGTTTATCGGGCATAGGGCTTACAGTTAGTTAGTGATGTTGAGACTTGAGAGTGATACATCCCAAGTTTTTTCAGAGGGGTGGTTGTAGAAGGAAAAACATGTGTGATTTAGAGTGGACGAGAAGCTAAGAAGCTCAATGGATGTCAAGATCTTTAGAATCGTACAGTGAGTTGTTAGATCTAGCTATACTAAATTGGCCTATTAGAAGCCACTTGACAATTGGCTGATTATCTTTCTCTAAGTGAGCAAGTTTCATTGGTTGATATTTTTATCAAAACCATCTCTTCTAGATTTAGTAGTATGTAGTTTGACATTTGTTGAAAAATTTGTGAATGCAAGGAGTTCCAAGAAGGCATGATAAATTGCTTTGTAGAATTAGTTTATTATTATCCCACTGTTTGCACATTAGTTCTCAGGCATCCAGTTGGTCTGTTTAGCTTCATAGTTCAGAAGCACGACTTGTCCTCCTTGAAATGACATGCTCAATTTCCTCTACTGACGTTATTTGGGTAGACGGTATTCCTTTCTTCATTTGTATAATGTTTGTAGGATAGATAAAGCAAGTGAATTCCATCCCTTCTGCTAGCCGTTAGTATTAGCACCACAAGATGGAATAGAACTAAGCTGACTCCCGTTCTTAATCCCAATCCATGGAGACAAAATAATGTCTATTCAAAGTGATGTAGGTTCTGTTGCTTTAAATCCTGTCACATCTGTATGACTTACTCCGACAAATTTACCATTTCATCAAAGTCTCCTCTTTTTCCCGATAAAAAGATCTTCAATTCTTTGAGGGTATGTAATAACCTTGTCTGTGTCTATCACTGGTGTAGTTGCAGTGCAAGAACAGAGAGCTGCCTCTGCCACAATGGTGGGCTCTACGGCTGGGGATTCTTCACCTCCTGATATAATGCTTCCAAAGGACAAAATAGAGCCTCTTGGGCTTCACATTCAACAAATTCCCTTGGAAGATGGCATTGGTGGCCCTGATATAAACTCTTCACCTGTGGAAGCTACATTTAACTTGGAAGAAAGTGGGATCAACTTTGATGCAAGTGTTGAACATCAATTCATTCCAAGCTTCAATGGGCAACCTCCGGCTAATCAAGACGACCATCGTGATAAGTCAGCATACGAGAATCTCTCAGCTCTTAGGAAAGGCTCTGATGAAGACATCAGCTTTTCCTTGCAGTTGGGTGGTCATGAATCCAAGAGAAGACGTTCAGAGCCTCCACCAAGCGCAGATGAACCAGAATGATTTTCTCCTTTTATCTGCTGGTACATTTAACTTTGAGGTCTTCCATGGAAAGGAAATGCATTTTGTGTTTGGTTCTAAAACAAGAAAGAGGTCCAATTTGGTTTTTGAGGTGCTAAATTTTCATCATATGGCCATTGATGGCAACCTGTGTATGAAGAGTTCTGTATTTGAACATCTCAGTAGTGCAAAATCCAATTGTAAAATACATGCAAGCTAAAAATGAGGCTGCTTTCTTG</genome_strand>
        <mrna_strand>GACACATTGGAAGTTTAATCGTTTTGAAGGGTGAGAATGGGGAAAAACCCCGACCAATTGGTATTATTTGGGGTGGAACTGCAAATAGGGGACGGCTTAAACTAAAGGTGGGACAATCTCCAGAAAATTGGACTAGTGGAGTTGACCTTGGGCGTCTGCTCAATTTCCTTGAACTTGATATCATTACCAAAGATGAAGCTCTAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGTGCAAGAACAGAGAGCTGCCTCTGCCACAATGGTGGGCTCTACGGCTGGGGATTCTTCACCTCCTGATATAATGCTTCCAAAGGACAAAATAGAGCCTCTTGGGCTTCACATTCAACAAATTCCCTTGGAAGATGGCATTGGTGGCCCTGATATAAACTCTTCACCTGTGGAAGCTACATTTAACTTGGAAGAAAGTGGGATCAACTTTGATGCAAGTGTTGAACATCAATTCATTCCAAGCTTCAATGGGCAACCTCCGGCTAATCAAGACGACCATCGTGATAAGTCAGCATACGAGAATCTCTCAGCTCTTAGGAAAGGCTCTGATGAAGACATCAGCTTTTCCTTGCAGTTGGGTGGTCATGAATCCAAGAGAAGACGTTCAGAGCCTCCACCAAGCGCAGATGAACCAGAATGATTTTCTCCTTTTATCTGCTGGTACATTTAACTTTGAGGTCTTCCATGGAAAGGAAATGCATTTTGTGTTTGGTTCTAAAACAAGAAAGAGGTCCAATTTGGTTTTTGAGGTGCTAAATTTTCATCATATGGCCATTGATGGCAACCTGTGTATGAAGAGTTCTGTATTTGAACATCTCAATAGTGCAAAATCCAATTGTAAAATACATGCACCCTAAAAATGAGGCTGCTTTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E737983" ref_strand="+" ref_description="SGN-E737983 [LC11DF12]">
      <seq>gagatgtcaaaattatagatttgcaatctcctattagtagtctcatcggaaagcaagtgacgaaggtcggaagaagctctggattgactacaggcactgtcttggcatatgcccttgaatataatgatgagaaagggatttgcttcttgactgattttcttgtcaatggagaaaaccagcagacttttgaccttgaaggagacagtggaagtttaatcgttttgaagggtgagaatggggaaaaaccccgaccaattggtattatttggggtggaactgcaaataggggacggcttaaactaaaggtgggacaatctccagaaaattggactagtggagttgaccttgggcgtctgctcaatttccttgaacttgatatcattaccaaagatgaagctctaaaagttgcagtgcaagaacagagagctgcctctgccacaatggtgggctctacggctggggattcttcacctcctgatataatgcttccaaaggacaaaatagagcctcttgggcttcacattcaacaaattcccttggaagatggcattggtggccctgatataaactcttcacctgtggaagctacatttaacttggaagaaagtgggatcaactttgatgcaagtgttgaacatcaattcattccaagcttcaatgggcaacctccggctaatcaagacgaccatcgtgataagtcagcatacgagaatctctcagctcttaggaaaggctctgatgaagacatcagcttttccttgcagttgggtggtcatgaatccaagagaagacgttcagagcctccaccaagcgcagatgaaccagaatgattttctccttttatctgctggtacatttaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="22148" stop="19721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21848" g_stop="21444" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21443" i_stop="20478" i_length="966">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20477" g_stop="20021" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="862" r_length="457" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E737983" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21848" e_stop="21444"/>
          <exon e_start="20477" e_stop="20021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATGTCAAAATTATAGATTTGCAATCTCCTATTAGTAGTCTCATCGGAAAGCAAGTGACGAAGGTCGGAAGAAGCTCTGGATTGACTACAGGCACTGTCTTGGCATATGCCCTTGAATATAATGATGAGAAAGGGATTTGCTTCTTGACTGATTTTCTTGTCAATGGAGAAAACCAGCAGACTTTTGACCTTGAAGGAGACAGTGGAAGTTTAATCGTTTTGAAGGGTGAGAATGGGGAAAAACCCCGACCAATTGGTATTATTTGGGGTGGAACTGCAAATAGGGGACGGCTTAAACTAAAGGTGGGACAATCTCCAGAAAATTGGACTAGTGGAGTTGACCTTGGGCGTCTGCTCAATTTCCTTGAACTTGATATCATTACCAAAGATGAAGCTCTAAAAGGTTTGTGGTCCTCAGCACTTGATTTCTGCCGATAAAGCTAGCTGTTTTTTTCTTTTTTGGTTACATGCACAAAAAATAAATCTCCAATGTGTCCCCCCCTAAATTTATCTTTTACCACTGTGCTTCCTAATTTGTTTATCGGGCATAGGGCTTACAGTTAGTTAGTGATGTTGAGACTTGAGAGTGATACATCCCAAGTTTTTTCAGAGGGGTGGTTGTAGAAGGAAAAACATGTGTGATTTAGAGTGGACGAGAAGCTAAGAAGCTCAATGGATGTCAAGATCTTTAGAATCGTACAGTGAGTTGTTAGATCTAGCTATACTAAATTGGCCTATTAGAAGCCACTTGACAATTGGCTGATTATCTTTCTCTAAGTGAGCAAGTTTCATTGGTTGATATTTTTATCAAAACCATCTCTTCTAGATTTAGTAGTATGTAGTTTGACATTTGTTGAAAAATTTGTGAATGCAAGGAGTTCCAAGAAGGCATGATAAATTGCTTTGTAGAATTAGTTTATTATTATCCCACTGTTTGCACATTAGTTCTCAGGCATCCAGTTGGTCTGTTTAGCTTCATAGTTCAGAAGCACGACTTGTCCTCCTTGAAATGACATGCTCAATTTCCTCTACTGACGTTATTTGGGTAGACGGTATTCCTTTCTTCATTTGTATAATGTTTGTAGGATAGATAAAGCAAGTGAATTCCATCCCTTCTGCTAGCCGTTAGTATTAGCACCACAAGATGGAATAGAACTAAGCTGACTCCCGTTCTTAATCCCAATCCATGGAGACAAAATAATGTCTATTCAAAGTGATGTAGGTTCTGTTGCTTTAAATCCTGTCACATCTGTATGACTTACTCCGACAAATTTACCATTTCATCAAAGTCTCCTCTTTTTCCCGATAAAAAGATCTTCAATTCTTTGAGGGTATGTAATAACCTTGTCTGTGTCTATCACTGGTGTAGTTGCAGTGCAAGAACAGAGAGCTGCCTCTGCCACAATGGTGGGCTCTACGGCTGGGGATTCTTCACCTCCTGATATAATGCTTCCAAAGGACAAAATAGAGCCTCTTGGGCTTCACATTCAACAAATTCCCTTGGAAGATGGCATTGGTGGCCCTGATATAAACTCTTCACCTGTGGAAGCTACATTTAACTTGGAAGAAAGTGGGATCAACTTTGATGCAAGTGTTGAACATCAATTCATTCCAAGCTTCAATGGGCAACCTCCGGCTAATCAAGACGACCATCGTGATAAGTCAGCATACGAGAATCTCTCAGCTCTTAGGAAAGGCTCTGATGAAGACATCAGCTTTTCCTTGCAGTTGGGTGGTCATGAATCCAAGAGAAGACGTTCAGAGCCTCCACCAAGCGCAGATGAACCAGAATGATTTTCTCCTTTTATCTGCTGGTACATTTAACT</genome_strand>
        <mrna_strand>GAGATGTCAAAATTATAGATTTGCAATCTCCTATTAGTAGTCTCATCGGAAAGCAAGTGACGAAGGTCGGAAGAAGCTCTGGATTGACTACAGGCACTGTCTTGGCATATGCCCTTGAATATAATGATGAGAAAGGGATTTGCTTCTTGACTGATTTTCTTGTCAATGGAGAAAACCAGCAGACTTTTGACCTTGAAGGAGACAGTGGAAGTTTAATCGTTTTGAAGGGTGAGAATGGGGAAAAACCCCGACCAATTGGTATTATTTGGGGTGGAACTGCAAATAGGGGACGGCTTAAACTAAAGGTGGGACAATCTCCAGAAAATTGGACTAGTGGAGTTGACCTTGGGCGTCTGCTCAATTTCCTTGAACTTGATATCATTACCAAAGATGAAGCTCTAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGTGCAAGAACAGAGAGCTGCCTCTGCCACAATGGTGGGCTCTACGGCTGGGGATTCTTCACCTCCTGATATAATGCTTCCAAAGGACAAAATAGAGCCTCTTGGGCTTCACATTCAACAAATTCCCTTGGAAGATGGCATTGGTGGCCCTGATATAAACTCTTCACCTGTGGAAGCTACATTTAACTTGGAAGAAAGTGGGATCAACTTTGATGCAAGTGTTGAACATCAATTCATTCCAAGCTTCAATGGGCAACCTCCGGCTAATCAAGACGACCATCGTGATAAGTCAGCATACGAGAATCTCTCAGCTCTTAGGAAAGGCTCTGATGAAGACATCAGCTTTTCCTTGCAGTTGGGTGGTCATGAATCCAAGAGAAGACGTTCAGAGCCTCCACCAAGCGCAGATGAACCAGAATGATTTTCTCCTTTTATCTGCTGGTACATTTAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E736466" ref_strand="+" ref_description="SGN-E736466 [LC05DE03]">
      <seq>cggagatgtcaaaattatagatttgcaatctcctattagtagtctcatcggaaagcaagtgacgaaggtcggaagaagctctggattgactacaggcactgtcttggcatatgcccttgaatataatgatgagaaagggatttgcttcttgactgattttcttgtcaatggagaaaaccagcagacttttgaccttgaaggagacagtggaagtttaatcgttttgaagggtgagaatggggaaaaaccccgaccaattggtattatttggggtggaactgcaaataggggacggcttaaactaaaggtgggacaatctccagaaaattggactagtggagttgaccttgggcgtctgctcaatttccttgaacttgatatcattaccaaagatgaagctctaaaagttgcagtgcaagaacagagagctgcctctgccacaatggtgggctctacggctggggattcttcacctcctgatataatgcttccaaaggacaaaatagagcctcttgggcttcacattcaacaaattcccttggaagatggcattggtggccctgatataaactcttcacctgtggaagctacatttaacttggaagaaagtgggatcaactttgatgcaagtgttgaacatcaattcattccaagcttcaatgggcaacctccggctaatcaagacgaccatcgtgataagtcagcatacgagaatctctcagctcttangaaaggctctgatgaagacatcagcttttccttgcagttgggtggtcatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="22149" stop="19803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21850" g_stop="21444" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21443" i_stop="20478" i_length="966">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20477" g_stop="20103" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="782" r_length="375" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E736466" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21850" e_stop="21444"/>
          <exon e_start="20477" e_stop="20103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGATGTCAAAATTATAGATTTGCAATCTCCTATTAGTAGTCTCATCGGAAAGCAAGTGACGAAGGTCGGAAGAAGCTCTGGATTGACTACAGGCACTGTCTTGGCATATGCCCTTGAATATAATGATGAGAAAGGGATTTGCTTCTTGACTGATTTTCTTGTCAATGGAGAAAACCAGCAGACTTTTGACCTTGAAGGAGACAGTGGAAGTTTAATCGTTTTGAAGGGTGAGAATGGGGAAAAACCCCGACCAATTGGTATTATTTGGGGTGGAACTGCAAATAGGGGACGGCTTAAACTAAAGGTGGGACAATCTCCAGAAAATTGGACTAGTGGAGTTGACCTTGGGCGTCTGCTCAATTTCCTTGAACTTGATATCATTACCAAAGATGAAGCTCTAAAAGGTTTGTGGTCCTCAGCACTTGATTTCTGCCGATAAAGCTAGCTGTTTTTTTCTTTTTTGGTTACATGCACAAAAAATAAATCTCCAATGTGTCCCCCCCTAAATTTATCTTTTACCACTGTGCTTCCTAATTTGTTTATCGGGCATAGGGCTTACAGTTAGTTAGTGATGTTGAGACTTGAGAGTGATACATCCCAAGTTTTTTCAGAGGGGTGGTTGTAGAAGGAAAAACATGTGTGATTTAGAGTGGACGAGAAGCTAAGAAGCTCAATGGATGTCAAGATCTTTAGAATCGTACAGTGAGTTGTTAGATCTAGCTATACTAAATTGGCCTATTAGAAGCCACTTGACAATTGGCTGATTATCTTTCTCTAAGTGAGCAAGTTTCATTGGTTGATATTTTTATCAAAACCATCTCTTCTAGATTTAGTAGTATGTAGTTTGACATTTGTTGAAAAATTTGTGAATGCAAGGAGTTCCAAGAAGGCATGATAAATTGCTTTGTAGAATTAGTTTATTATTATCCCACTGTTTGCACATTAGTTCTCAGGCATCCAGTTGGTCTGTTTAGCTTCATAGTTCAGAAGCACGACTTGTCCTCCTTGAAATGACATGCTCAATTTCCTCTACTGACGTTATTTGGGTAGACGGTATTCCTTTCTTCATTTGTATAATGTTTGTAGGATAGATAAAGCAAGTGAATTCCATCCCTTCTGCTAGCCGTTAGTATTAGCACCACAAGATGGAATAGAACTAAGCTGACTCCCGTTCTTAATCCCAATCCATGGAGACAAAATAATGTCTATTCAAAGTGATGTAGGTTCTGTTGCTTTAAATCCTGTCACATCTGTATGACTTACTCCGACAAATTTACCATTTCATCAAAGTCTCCTCTTTTTCCCGATAAAAAGATCTTCAATTCTTTGAGGGTATGTAATAACCTTGTCTGTGTCTATCACTGGTGTAGTTGCAGTGCAAGAACAGAGAGCTGCCTCTGCCACAATGGTGGGCTCTACGGCTGGGGATTCTTCACCTCCTGATATAATGCTTCCAAAGGACAAAATAGAGCCTCTTGGGCTTCACATTCAACAAATTCCCTTGGAAGATGGCATTGGTGGCCCTGATATAAACTCTTCACCTGTGGAAGCTACATTTAACTTGGAAGAAAGTGGGATCAACTTTGATGCAAGTGTTGAACATCAATTCATTCCAAGCTTCAATGGGCAACCTCCGGCTAATCAAGACGACCATCGTGATAAGTCAGCATACGAGAATCTCTCAGCTCTTAGGAAAGGCTCTGATGAAGACATCAGCTTTTCCTTGCAGTTGGGTGGTCATGAAT</genome_strand>
        <mrna_strand>CGGAGATGTCAAAATTATAGATTTGCAATCTCCTATTAGTAGTCTCATCGGAAAGCAAGTGACGAAGGTCGGAAGAAGCTCTGGATTGACTACAGGCACTGTCTTGGCATATGCCCTTGAATATAATGATGAGAAAGGGATTTGCTTCTTGACTGATTTTCTTGTCAATGGAGAAAACCAGCAGACTTTTGACCTTGAAGGAGACAGTGGAAGTTTAATCGTTTTGAAGGGTGAGAATGGGGAAAAACCCCGACCAATTGGTATTATTTGGGGTGGAACTGCAAATAGGGGACGGCTTAAACTAAAGGTGGGACAATCTCCAGAAAATTGGACTAGTGGAGTTGACCTTGGGCGTCTGCTCAATTTCCTTGAACTTGATATCATTACCAAAGATGAAGCTCTAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGTGCAAGAACAGAGAGCTGCCTCTGCCACAATGGTGGGCTCTACGGCTGGGGATTCTTCACCTCCTGATATAATGCTTCCAAAGGACAAAATAGAGCCTCTTGGGCTTCACATTCAACAAATTCCCTTGGAAGATGGCATTGGTGGCCCTGATATAAACTCTTCACCTGTGGAAGCTACATTTAACTTGGAAGAAAGTGGGATCAACTTTGATGCAAGTGTTGAACATCAATTCATTCCAAGCTTCAATGGGCAACCTCCGGCTAATCAAGACGACCATCGTGATAAGTCAGCATACGAGAATCTCTCAGCTCTTANGAAAGGCTCTGATGAAGACATCAGCTTTTCCTTGCAGTTGGGTGGTCATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E543474" ref_strand="+" ref_description="SGN-E543474 [TUS-65-E23]">
      <seq>ggcatatttgctggcataaatccagagacatttgtcagggcagatggtgcattcattcctttcacagatgattttgatatgacctctgttactacttctgttaagggcataggggaaattggagatgtcaaaattatagatttgcaatctcctattagtagtctcatcggaaagcaagtgacgaaggtcggaagaagctctggattgactacaggcactgtcttggcatatgcccttgaatataatgatgagaaagggatttgcttcttgactgattttcttgtcaatggagaaaaccagcagacttttgaccttgaaggagacagtggaagtttaatcgttttgaagggtgagaatggggaaaaaccccgaccaattggtattatttggggtggaactgcaaataggggacggcttaaactaaaggtgggacaatctccagaaaattggactagtggagttgaccttgggcgtctgctcaatttccttgaacttgatatcattaccaaagatgaagctctaaaagttgcagtgcaagaacagagagctgcctctgccacaatggtgggctctacggctggggattcttcacctcctgatataatgcttccaaaggacaaaatagagcctcttgggcttcacattcaacaaattcccttggaagatggcatgggtggccctgatataaactcttcacctgtggaagctacatttaacttggaagaaagtgggatcaactttgatgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="23308" stop="19956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23008" g_stop="22984" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22983" i_stop="21945" i_length="1039">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21944" g_stop="21444" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="526" r_length="501" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21443" i_stop="20478" i_length="966">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20477" g_stop="20256" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="748" r_length="222" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E543474" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23008" e_stop="22984"/>
          <exon e_start="21944" e_stop="21444"/>
          <exon e_start="20477" e_stop="20256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATATTTGCTGGCATAAATCCAGGTTAAGTGTTTCTTCTTACCTTCTTTACTGATTTATGTTGGAAGGAAGAATGTTCTGATGCTACAAATCATTATTGAAATTCGCTAAATGAATAGTGGATTATGATGTCTCGCCTTGTGCTTTAGTAAATATGTCTTGTGATACTAATCCTTTCTCCATCATCAATTCATATCTATCATTTCTTGGATGGAAGAAGGTTATGTAAAAACTTTGAGATCTCACTAATCAGATTCCATTGTATTGATCCATAAGGTGTTGTATGAAATGAAATATAATCAAATGATAAAAATGAGGTTGTCTTGCTAATGGGGGACAAAGTTAACTGATACCTGTGCTGATGGGAGGTAGCAGGTATCCTGTGGGATTAGTCGAGGTGTGTGCAAGCTGGCCCGCACACCACCTGTTATAAAAGAATATGTTAGACAATGTCTCTTTTGTCCCGTGTGATTATATTTTCATCCTGCCACCACAACATATCATGGATTAAATCAATGTTATCAAAGGCGAAAAGCGCAAAAAAGCTCCAAGGTCCGTGGGGACTTTAAGCTCAAAGCACAAATAAAGCTTGGGCTTTAATTAAAAAAGGCGCAAAAGGAGAAAAAAAACAAATATATATGTTTAGTCCAAAACTAATAATTATAAACATTATGACAAATATATGACCAATGAATTGAAATTTTTTTAGTTATGAAGTGAATTATCAATTGTTTCGTGTCAATTCTTCATAAGAGGTTCATTGTCAAGAAAGTTTGTCTTAGAACCTTGACGACGATACTGAAGCGCATATAAAGCGAGGCGAAGCGCTCAACACATTTTGAGCCTCGCTTTGGGGCTTAAGCGCGCCTTTGATCTGCAAGTGCAACCCATGCTAGAAATCTTCATTTTTGTTTCTTTCTATGTTTTTAGATAGATGAAAAGTTATTCTTTGCGCACTTGCATGTTACCTGCTCTGCTCCTGAAGGTTCTTAATTTGTTAGAGTTATTATTTTTCTTATAGCATTGGTAAGATTTCTAAATGTGGAATTGATTACTCGTGCAGAGACATTTGTCAGGGCAGATGGTGCATTCATTCCTTTCACAGATGATTTTGATATGACCTCTGTTACTACTTCTGTTAAGGGCATAGGGGAAATTGGAGATGTCAAAATTATAGATTTGCAATCTCCTATTAGTAGTCTCATCGGAAAGCAAGTGACGAAGGTCGGAAGAAGCTCTGGATTGACTACAGGCACTGTCTTGGCATATGCCCTTGAATATAATGATGAGAAAGGGATTTGCTTCTTGACTGATTTTCTTGTCAATGGAGAAAACCAGCAGACTTTTGACCTTGAAGGAGACAGTGGAAGTTTAATCGTTTTGAAGGGTGAGAATGGGGAAAAACCCCGACCAATTGGTATTATTTGGGGTGGAACTGCAAATAGGGGACGGCTTAAACTAAAGGTGGGACAATCTCCAGAAAATTGGACTAGTGGAGTTGACCTTGGGCGTCTGCTCAATTTCCTTGAACTTGATATCATTACCAAAGATGAAGCTCTAAAAGGTTTGTGGTCCTCAGCACTTGATTTCTGCCGATAAAGCTAGCTGTTTTTTTCTTTTTTGGTTACATGCACAAAAAATAAATCTCCAATGTGTCCCCCCCTAAATTTATCTTTTACCACTGTGCTTCCTAATTTGTTTATCGGGCATAGGGCTTACAGTTAGTTAGTGATGTTGAGACTTGAGAGTGATACATCCCAAGTTTTTTCAGAGGGGTGGTTGTAGAAGGAAAAACATGTGTGATTTAGAGTGGACGAGAAGCTAAGAAGCTCAATGGATGTCAAGATCTTTAGAATCGTACAGTGAGTTGTTAGATCTAGCTATACTAAATTGGCCTATTAGAAGCCACTTGACAATTGGCTGATTATCTTTCTCTAAGTGAGCAAGTTTCATTGGTTGATATTTTTATCAAAACCATCTCTTCTAGATTTAGTAGTATGTAGTTTGACATTTGTTGAAAAATTTGTGAATGCAAGGAGTTCCAAGAAGGCATGATAAATTGCTTTGTAGAATTAGTTTATTATTATCCCACTGTTTGCACATTAGTTCTCAGGCATCCAGTTGGTCTGTTTAGCTTCATAGTTCAGAAGCACGACTTGTCCTCCTTGAAATGACATGCTCAATTTCCTCTACTGACGTTATTTGGGTAGACGGTATTCCTTTCTTCATTTGTATAATGTTTGTAGGATAGATAAAGCAAGTGAATTCCATCCCTTCTGCTAGCCGTTAGTATTAGCACCACAAGATGGAATAGAACTAAGCTGACTCCCGTTCTTAATCCCAATCCATGGAGACAAAATAATGTCTATTCAAAGTGATGTAGGTTCTGTTGCTTTAAATCCTGTCACATCTGTATGACTTACTCCGACAAATTTACCATTTCATCAAAGTCTCCTCTTTTTCCCGATAAAAAGATCTTCAATTCTTTGAGGGTATGTAATAACCTTGTCTGTGTCTATCACTGGTGTAGTTGCAGTGCAAGAACAGAGAGCTGCCTCTGCCACAATGGTGGGCTCTACGGCTGGGGATTCTTCACCTCCTGATATAATGCTTCCAAAGGACAAAATAGAGCCTCTTGGGCTTCACATTCAACAAATTCCCTTGGAAGATGGCATTGGTGGCCCTGATATAAACTCTTCACCTGTGGAAGCTACATTTAACTTGGAAGAAAGTGGGATCAACTTTGATGCAA</genome_strand>
        <mrna_strand>GGCATATTTGCTGGCATAAATCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACATTTGTCAGGGCAGATGGTGCATTCATTCCTTTCACAGATGATTTTGATATGACCTCTGTTACTACTTCTGTTAAGGGCATAGGGGAAATTGGAGATGTCAAAATTATAGATTTGCAATCTCCTATTAGTAGTCTCATCGGAAAGCAAGTGACGAAGGTCGGAAGAAGCTCTGGATTGACTACAGGCACTGTCTTGGCATATGCCCTTGAATATAATGATGAGAAAGGGATTTGCTTCTTGACTGATTTTCTTGTCAATGGAGAAAACCAGCAGACTTTTGACCTTGAAGGAGACAGTGGAAGTTTAATCGTTTTGAAGGGTGAGAATGGGGAAAAACCCCGACCAATTGGTATTATTTGGGGTGGAACTGCAAATAGGGGACGGCTTAAACTAAAGGTGGGACAATCTCCAGAAAATTGGACTAGTGGAGTTGACCTTGGGCGTCTGCTCAATTTCCTTGAACTTGATATCATTACCAAAGATGAAGCTCTAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGTGCAAGAACAGAGAGCTGCCTCTGCCACAATGGTGGGCTCTACGGCTGGGGATTCTTCACCTCCTGATATAATGCTTCCAAAGGACAAAATAGAGCCTCTTGGGCTTCACATTCAACAAATTCCCTTGGAAGATGGCATGGGTGGCCCTGATATAAACTCTTCACCTGTGGAAGCTACATTTAACTTGGAAGAAAGTGGGATCAACTTTGATGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E274810" ref_strand="+" ref_description="SGN-E274810 [cLEN-13-D15]">
      <seq>ctacttctgttaagggcataggggaaattggagatgtcaaaattatagatttgcaatctcctattagtagtctcatcggaaagcaagtgacgaaggtcggaagaagctctggattgactacaggcactgtcttggcatatgcccttgaatataatgatgagaaagggatttgcttcttgactgattttcttgtcaatggagaaaaccagcagacttttgaccttgaaggagacagtggaagtttaatcgttttgaagggtgagaatggggaaaaaccccgaccaattggtattatttggggtggaactgcaaataggggacggcttaaactaaaggtgggacaatctccagaaaattggactagtggagttgaccttgggcgtctgctcaatttccttgaacttgatatcattaccaaagatgaagctctaaaagttgcagtgcaagaacagagagctgcctctgccacaatggtgggctctacggctggggattcttcacctcctgatataatgcttccaaaggacaaaatagagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="22178" stop="20075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21878" g_stop="21444" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="435" r_length="435" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21443" i_stop="20478" i_length="966">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20477" g_stop="20375" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="538" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E274810" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21878" e_stop="21444"/>
          <exon e_start="20477" e_stop="20375"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTTCTGTTAAGGGCATAGGGGAAATTGGAGATGTCAAAATTATAGATTTGCAATCTCCTATTAGTAGTCTCATCGGAAAGCAAGTGACGAAGGTCGGAAGAAGCTCTGGATTGACTACAGGCACTGTCTTGGCATATGCCCTTGAATATAATGATGAGAAAGGGATTTGCTTCTTGACTGATTTTCTTGTCAATGGAGAAAACCAGCAGACTTTTGACCTTGAAGGAGACAGTGGAAGTTTAATCGTTTTGAAGGGTGAGAATGGGGAAAAACCCCGACCAATTGGTATTATTTGGGGTGGAACTGCAAATAGGGGACGGCTTAAACTAAAGGTGGGACAATCTCCAGAAAATTGGACTAGTGGAGTTGACCTTGGGCGTCTGCTCAATTTCCTTGAACTTGATATCATTACCAAAGATGAAGCTCTAAAAGGTTTGTGGTCCTCAGCACTTGATTTCTGCCGATAAAGCTAGCTGTTTTTTTCTTTTTTGGTTACATGCACAAAAAATAAATCTCCAATGTGTCCCCCCCTAAATTTATCTTTTACCACTGTGCTTCCTAATTTGTTTATCGGGCATAGGGCTTACAGTTAGTTAGTGATGTTGAGACTTGAGAGTGATACATCCCAAGTTTTTTCAGAGGGGTGGTTGTAGAAGGAAAAACATGTGTGATTTAGAGTGGACGAGAAGCTAAGAAGCTCAATGGATGTCAAGATCTTTAGAATCGTACAGTGAGTTGTTAGATCTAGCTATACTAAATTGGCCTATTAGAAGCCACTTGACAATTGGCTGATTATCTTTCTCTAAGTGAGCAAGTTTCATTGGTTGATATTTTTATCAAAACCATCTCTTCTAGATTTAGTAGTATGTAGTTTGACATTTGTTGAAAAATTTGTGAATGCAAGGAGTTCCAAGAAGGCATGATAAATTGCTTTGTAGAATTAGTTTATTATTATCCCACTGTTTGCACATTAGTTCTCAGGCATCCAGTTGGTCTGTTTAGCTTCATAGTTCAGAAGCACGACTTGTCCTCCTTGAAATGACATGCTCAATTTCCTCTACTGACGTTATTTGGGTAGACGGTATTCCTTTCTTCATTTGTATAATGTTTGTAGGATAGATAAAGCAAGTGAATTCCATCCCTTCTGCTAGCCGTTAGTATTAGCACCACAAGATGGAATAGAACTAAGCTGACTCCCGTTCTTAATCCCAATCCATGGAGACAAAATAATGTCTATTCAAAGTGATGTAGGTTCTGTTGCTTTAAATCCTGTCACATCTGTATGACTTACTCCGACAAATTTACCATTTCATCAAAGTCTCCTCTTTTTCCCGATAAAAAGATCTTCAATTCTTTGAGGGTATGTAATAACCTTGTCTGTGTCTATCACTGGTGTAGTTGCAGTGCAAGAACAGAGAGCTGCCTCTGCCACAATGGTGGGCTCTACGGCTGGGGATTCTTCACCTCCTGATATAATGCTTCCAAAGGACAAAATAGAGCC</genome_strand>
        <mrna_strand>CTACTTCTGTTAAGGGCATAGGGGAAATTGGAGATGTCAAAATTATAGATTTGCAATCTCCTATTAGTAGTCTCATCGGAAAGCAAGTGACGAAGGTCGGAAGAAGCTCTGGATTGACTACAGGCACTGTCTTGGCATATGCCCTTGAATATAATGATGAGAAAGGGATTTGCTTCTTGACTGATTTTCTTGTCAATGGAGAAAACCAGCAGACTTTTGACCTTGAAGGAGACAGTGGAAGTTTAATCGTTTTGAAGGGTGAGAATGGGGAAAAACCCCGACCAATTGGTATTATTTGGGGTGGAACTGCAAATAGGGGACGGCTTAAACTAAAGGTGGGACAATCTCCAGAAAATTGGACTAGTGGAGTTGACCTTGGGCGTCTGCTCAATTTCCTTGAACTTGATATCATTACCAAAGATGAAGCTCTAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGTGCAAGAACAGAGAGCTGCCTCTGCCACAATGGTGGGCTCTACGGCTGGGGATTCTTCACCTCCTGATATAATGCTTCCAAAGGACAAAATAGAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E304877" ref_strand="+" ref_description="SGN-E304877 [cLEX-10-A20]">
      <seq>gcatatttgctggcataaatccagagacatttgtcagggcagatggtgcattcattcctttcacagatgattttgatatgacctctgttactacttctgttaagggcataggggaaattggagatgtcaaaattatagatttgcaatctcctattagtagtctcatcggaaagcaagtgacgaaagtcggaagaagctctggattgactacaggcactgtcttggcatatgcccttgaatataatgatgagaaagggatttgcttcttgactgattttcttgtcaatggagaaaaccagcagacttttgaccttgaaggagacagtggaagtttaatcgttttgaagggtgagaatggggaaaaaccccgaccaattggtattatttggggtggaactgcaaataggggacggcttaaactaaaggtgggacaatctccagaaaattggactagtggagttgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="23307" stop="21204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23007" g_stop="22984" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22983" i_stop="21945" i_length="1039">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21944" g_stop="21504" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="465" r_length="441" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E304877" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23007" e_stop="22984"/>
          <exon e_start="21944" e_stop="21504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATATTTGCTGGCATAAATCCAGGTTAAGTGTTTCTTCTTACCTTCTTTACTGATTTATGTTGGAAGGAAGAATGTTCTGATGCTACAAATCATTATTGAAATTCGCTAAATGAATAGTGGATTATGATGTCTCGCCTTGTGCTTTAGTAAATATGTCTTGTGATACTAATCCTTTCTCCATCATCAATTCATATCTATCATTTCTTGGATGGAAGAAGGTTATGTAAAAACTTTGAGATCTCACTAATCAGATTCCATTGTATTGATCCATAAGGTGTTGTATGAAATGAAATATAATCAAATGATAAAAATGAGGTTGTCTTGCTAATGGGGGACAAAGTTAACTGATACCTGTGCTGATGGGAGGTAGCAGGTATCCTGTGGGATTAGTCGAGGTGTGTGCAAGCTGGCCCGCACACCACCTGTTATAAAAGAATATGTTAGACAATGTCTCTTTTGTCCCGTGTGATTATATTTTCATCCTGCCACCACAACATATCATGGATTAAATCAATGTTATCAAAGGCGAAAAGCGCAAAAAAGCTCCAAGGTCCGTGGGGACTTTAAGCTCAAAGCACAAATAAAGCTTGGGCTTTAATTAAAAAAGGCGCAAAAGGAGAAAAAAAACAAATATATATGTTTAGTCCAAAACTAATAATTATAAACATTATGACAAATATATGACCAATGAATTGAAATTTTTTTAGTTATGAAGTGAATTATCAATTGTTTCGTGTCAATTCTTCATAAGAGGTTCATTGTCAAGAAAGTTTGTCTTAGAACCTTGACGACGATACTGAAGCGCATATAAAGCGAGGCGAAGCGCTCAACACATTTTGAGCCTCGCTTTGGGGCTTAAGCGCGCCTTTGATCTGCAAGTGCAACCCATGCTAGAAATCTTCATTTTTGTTTCTTTCTATGTTTTTAGATAGATGAAAAGTTATTCTTTGCGCACTTGCATGTTACCTGCTCTGCTCCTGAAGGTTCTTAATTTGTTAGAGTTATTATTTTTCTTATAGCATTGGTAAGATTTCTAAATGTGGAATTGATTACTCGTGCAGAGACATTTGTCAGGGCAGATGGTGCATTCATTCCTTTCACAGATGATTTTGATATGACCTCTGTTACTACTTCTGTTAAGGGCATAGGGGAAATTGGAGATGTCAAAATTATAGATTTGCAATCTCCTATTAGTAGTCTCATCGGAAAGCAAGTGACGAAGGTCGGAAGAAGCTCTGGATTGACTACAGGCACTGTCTTGGCATATGCCCTTGAATATAATGATGAGAAAGGGATTTGCTTCTTGACTGATTTTCTTGTCAATGGAGAAAACCAGCAGACTTTTGACCTTGAAGGAGACAGTGGAAGTTTAATCGTTTTGAAGGGTGAGAATGGGGAAAAACCCCGACCAATTGGTATTATTTGGGGTGGAACTGCAAATAGGGGACGGCTTAAACTAAAGGTGGGACAATCTCCAGAAAATTGGACTAGTGGAGTTGACC</genome_strand>
        <mrna_strand>GCATATTTGCTGGCATAAATCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACATTTGTCAGGGCAGATGGTGCATTCATTCCTTTCACAGATGATTTTGATATGACCTCTGTTACTACTTCTGTTAAGGGCATAGGGGAAATTGGAGATGTCAAAATTATAGATTTGCAATCTCCTATTAGTAGTCTCATCGGAAAGCAAGTGACGAAAGTCGGAAGAAGCTCTGGATTGACTACAGGCACTGTCTTGGCATATGCCCTTGAATATAATGATGAGAAAGGGATTTGCTTCTTGACTGATTTTCTTGTCAATGGAGAAAACCAGCAGACTTTTGACCTTGAAGGAGACAGTGGAAGTTTAATCGTTTTGAAGGGTGAGAATGGGGAAAAACCCCGACCAATTGGTATTATTTGGGGTGGAACTGCAAATAGGGGACGGCTTAAACTAAAGGTGGGACAATCTCCAGAAAATTGGACTAGTGGAGTTGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E341015" ref_strand="+" ref_description="SGN-E341015 [cTOF-5-D12]">
      <seq>acacttcaaccttatgcatcggctggacaacactctgagagtaatgctgcatacttctcctggcctagtcggctaaatgatgctgctgaagagagagcaaactatttcggaaatcttcagaaaggggttttgccagaaactcttggccgattgcccgaggggcagcgagcaacaaccttacttgacctcatgactataagggcatctcatagcaaactcttgcgttgctacagtctcggtacagcaattggttttcgtattcgacgtggtgttttgactgatataccagcaatactagtgtttgtatcccggaaagttcacaaacaatggcttagtccaatccagtgtctacctactgctttagagggccctggaggtgtgtggtgtgaagtggatgtggtcgagttctcctattttggtgcaccagagccaacacccaaggagcagttgtacacagagatagtcgatgacctgcggggtagtgacccatatattggttcaggatctcaggtagcaagccaggagacatatggaaccttgggcgctattgtgaggagtctgtcaggcaatcgacaagttggtttcctaacaaaccggcatgttgctgttgacttagattacccaaatcaaaaaatgtttcatcctttacctccaacattaggacctggagtatantctgggttcagtggagagagctacatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="25163" stop="22731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24863" g_stop="24498" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24497" i_stop="24180" i_length="318">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24179" g_stop="24036" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="510" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24035" i_stop="23225" i_length="811">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23224" g_stop="23031" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="705" r_length="195" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E341015" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24863" e_stop="24498"/>
          <exon e_start="24179" e_stop="24036"/>
          <exon e_start="23224" e_stop="23031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTTCAACCTTATGCATCGGCTGGACAACACTCTGAGAGTAATGCTGCATACTTCTCCTGGCCTAGTCGGCTAAATGATGCTGCTGAAGAGAGAGCAAACTATTTCGGAAATCTTCAGAAAGGGGTTTTGCCAGAAACTCTTGGCCGATTGCCCGAGGGGCAGCGAGCAACAACCTTACTTGACCTCATGACTATAAGGGCATCTCATAGCAAACTCTTGCGTTGCTACAGTCTCGGTACAGCAATTGGTTTTCGTATTCGACGTGGTGTTTTGACTGATATACCAGCAATACTAGTGTTTGTATCCCGGAAAGTTCACAAACAATGGCTTAGTCCAATCCAGTGTCTACCTACTGCTTTAGAGGTGATCAAAAAGATGCCTAATTATCTCTTATCCTATTTCTGTCACCCTCTCGTGAAAGATTTTCCTGAATTAGGACAAAAAAAGATGACGAGACTTTACTTCCTTATAAAAACAAAAGAGGATGAAATTTACTTCATTGATTTTCTTTTATCTTCTCTTGCTGTATTCCTCCCCGTCACTTTTCCTGATAGGGATTGTTCAATTGTGTGAGTTTAACTATTATTAGAGCCCAAAGAATCAACACTTGCTAACAAATGTTATTCTTGCATCATTTATTCCTTAGTTTTCTCTATGCTTAAATATGTTACTTATCATCAGGGCCCTGGAGGTGTGTGGTGTGAAGTGGATGTGGTCGAGTTCTCCTATTTTGGTGCACCAGAGCCAACACCCAAGGAGCAGTTGTACACAGAGATAGTCGATGACCTGCGGGGTAGTGACCCATATATTGGTTCAGGATCTCAGGTAGTTTGATGTTTATCACAACTTTTCACTCTAAAGATGCTTTGATTGAGTTTTGATGAGTTCATAAGAGAGTTGAAGTCTAAGTCGAGTCCTAGAAAATGTATCAATCAATTTTCAAATCACGTAGGTTGGGCAAATTTATGGCAAGTATTGCTATTTTCATGAGTCTTGTTAGTAGATCGACTCTAAGCATCTTGCATAAAAGTTAAAACAACTATTTGGGTGTGGCAGATCCTTGGAGCCATCTGCTTCTTTGCTTCTGAGCACATTTTGTATTTTTCTGAAGTGCTTATCATTCAGTATCGGAACTGGATTTATGCTTACCATATTTTTCTGAAACTATGCAGCAAGGACAACTTATGTTAGTCTTATGTACTAAAAGGCATCTACTAATTTTGAAAAGGTTGGAAGAAATGGATGATGATTTCCTGTAATGTGTCTAAGAGCCCATAAACTTTATATGTGCACAAAGACACTTTTTAACACCTTTCTCCATTGTTTGGTTAGACTCACATCCTTTCTGAGTGAATTGGTTAGTCATCAAATCAGTTGAGTTCCTTTGAAATCTCCAGCAAAGGTTAAATACATTATAAGGGACTCGGGGAAAGGTTTTGTTTGTCAACAAGTTAGTTGAGCTTCTTTGTTGAGATCTCCAGTCGTTTTTAATTGCATCTTAGGAAGATAAACAATTAAAGAGTCTGCAGAAGAAATCAGATGTAAACTACTTGTTTGGCTTGTCATTTCTTTCTTCCCTAAGGTTATCACTCTGATCGTACATGTTAATTCACCACATTTTATTGGAAACATCTAGGTAGCAAGCCAGGAGACATATGGAACCTTGGGCGCTATTGTGAGGAGTCTGTCAGGCAATCGACAAGTTGGTTTCCTAACAAACCGGCATGTTGCTGTTGACTTAGATTACCCAAATCAAAAAATGTTTCATCCTTTACCTCCAACATTAGGACCTGGAGTATA-TCTGGGTTCAGTGGAGAGAGCTACATCTTT</genome_strand>
        <mrna_strand>ACACTTCAACCTTATGCATCGGCTGGACAACACTCTGAGAGTAATGCTGCATACTTCTCCTGGCCTAGTCGGCTAAATGATGCTGCTGAAGAGAGAGCAAACTATTTCGGAAATCTTCAGAAAGGGGTTTTGCCAGAAACTCTTGGCCGATTGCCCGAGGGGCAGCGAGCAACAACCTTACTTGACCTCATGACTATAAGGGCATCTCATAGCAAACTCTTGCGTTGCTACAGTCTCGGTACAGCAATTGGTTTTCGTATTCGACGTGGTGTTTTGACTGATATACCAGCAATACTAGTGTTTGTATCCCGGAAAGTTCACAAACAATGGCTTAGTCCAATCCAGTGTCTACCTACTGCTTTAGAG..............................................................................................................................................................................................................................................................................................................................GGCCCTGGAGGTGTGTGGTGTGAAGTGGATGTGGTCGAGTTCTCCTATTTTGGTGCACCAGAGCCAACACCCAAGGAGCAGTTGTACACAGAGATAGTCGATGACCTGCGGGGTAGTGACCCATATATTGGTTCAGGATCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAAGCCAGGAGACATATGGAACCTTGGGCGCTATTGTGAGGAGTCTGTCAGGCAATCGACAAGTTGGTTTCCTAACAAACCGGCATGTTGCTGTTGACTTAGATTACCCAAATCAAAAAATGTTTCATCCTTTACCTCCAACATTAGGACCTGGAGTATANTCTGGGTTCAGTGGAGAGAGCTACATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E271798" ref_strand="+" ref_description="SGN-E271798 [cLEM-8-O23]">
      <seq>tgcatacttcttctggcctaatcgggtaaatgatgctgctggggagagagcaaactatttcggaaatcttcagaaaggggttttgccagaaactcttggccgattgcccgaggggcagcgagcaacaaccttacttgacctcatgactataagggcatctcatagcaaactcttgcgttgctacagtctcggtacagcctttggttttcgtattcgacgtggtgttttgactgatatatcagcaatactagtgtttgtatcccggaaagttcacaaacaatggcttagtccaatccagtgtctacctactgctttagagggccctggaggtgtgtggagtgaagaggatgtggacaacttctcctattgtggtgcaccagagccaacacccaaggagcaggtgtacacagagatagtcgatgacctgcggggtagtgacccatatattgggtcaagatctcaggtagcaagccaggagacatattgaaccttgggcgctattgtgaggagtctgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="25116" stop="22871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24816" g_stop="24498" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24497" i_stop="24180" i_length="318">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24179" g_stop="24036" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="463" r_length="144" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24035" i_stop="23225" i_length="811">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23224" g_stop="23171" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="517" r_length="54" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E271798" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24816" e_stop="24498"/>
          <exon e_start="24179" e_stop="24036"/>
          <exon e_start="23224" e_stop="23171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATACTTCTCCTGGCCTAGTCGGCTAAATGATGCTGCTGAAGAGAGAGCAAACTATTTCGGAAATCTTCAGAAAGGGGTTTTGCCAGAAACTCTTGGCCGATTGCCCGAGGGGCAGCGAGCAACAACCTTACTTGACCTCATGACTATAAGGGCATCTCATAGCAAACTCTTGCGTTGCTACAGTCTCGGTACAGCAATTGGTTTTCGTATTCGACGTGGTGTTTTGACTGATATACCAGCAATACTAGTGTTTGTATCCCGGAAAGTTCACAAACAATGGCTTAGTCCAATCCAGTGTCTACCTACTGCTTTAGAGGTGATCAAAAAGATGCCTAATTATCTCTTATCCTATTTCTGTCACCCTCTCGTGAAAGATTTTCCTGAATTAGGACAAAAAAAGATGACGAGACTTTACTTCCTTATAAAAACAAAAGAGGATGAAATTTACTTCATTGATTTTCTTTTATCTTCTCTTGCTGTATTCCTCCCCGTCACTTTTCCTGATAGGGATTGTTCAATTGTGTGAGTTTAACTATTATTAGAGCCCAAAGAATCAACACTTGCTAACAAATGTTATTCTTGCATCATTTATTCCTTAGTTTTCTCTATGCTTAAATATGTTACTTATCATCAGGGCCCTGGAGGTGTGTGGTGTGAAGTGGATGTGGTCGAGTTCTCCTATTTTGGTGCACCAGAGCCAACACCCAAGGAGCAGTTGTACACAGAGATAGTCGATGACCTGCGGGGTAGTGACCCATATATTGGTTCAGGATCTCAGGTAGTTTGATGTTTATCACAACTTTTCACTCTAAAGATGCTTTGATTGAGTTTTGATGAGTTCATAAGAGAGTTGAAGTCTAAGTCGAGTCCTAGAAAATGTATCAATCAATTTTCAAATCACGTAGGTTGGGCAAATTTATGGCAAGTATTGCTATTTTCATGAGTCTTGTTAGTAGATCGACTCTAAGCATCTTGCATAAAAGTTAAAACAACTATTTGGGTGTGGCAGATCCTTGGAGCCATCTGCTTCTTTGCTTCTGAGCACATTTTGTATTTTTCTGAAGTGCTTATCATTCAGTATCGGAACTGGATTTATGCTTACCATATTTTTCTGAAACTATGCAGCAAGGACAACTTATGTTAGTCTTATGTACTAAAAGGCATCTACTAATTTTGAAAAGGTTGGAAGAAATGGATGATGATTTCCTGTAATGTGTCTAAGAGCCCATAAACTTTATATGTGCACAAAGACACTTTTTAACACCTTTCTCCATTGTTTGGTTAGACTCACATCCTTTCTGAGTGAATTGGTTAGTCATCAAATCAGTTGAGTTCCTTTGAAATCTCCAGCAAAGGTTAAATACATTATAAGGGACTCGGGGAAAGGTTTTGTTTGTCAACAAGTTAGTTGAGCTTCTTTGTTGAGATCTCCAGTCGTTTTTAATTGCATCTTAGGAAGATAAACAATTAAAGAGTCTGCAGAAGAAATCAGATGTAAACTACTTGTTTGGCTTGTCATTTCTTTCTTCCCTAAGGTTATCACTCTGATCGTACATGTTAATTCACCACATTTTATTGGAAACATCTAGGTAGCAAGCCAGGAGACATATGGAACCTTGGGCGCTATTGTGAGGAGTCTGTCA</genome_strand>
        <mrna_strand>TGCATACTTCTTCTGGCCTAATCGGGTAAATGATGCTGCTGGGGAGAGAGCAAACTATTTCGGAAATCTTCAGAAAGGGGTTTTGCCAGAAACTCTTGGCCGATTGCCCGAGGGGCAGCGAGCAACAACCTTACTTGACCTCATGACTATAAGGGCATCTCATAGCAAACTCTTGCGTTGCTACAGTCTCGGTACAGCCTTTGGTTTTCGTATTCGACGTGGTGTTTTGACTGATATATCAGCAATACTAGTGTTTGTATCCCGGAAAGTTCACAAACAATGGCTTAGTCCAATCCAGTGTCTACCTACTGCTTTAGAG..............................................................................................................................................................................................................................................................................................................................GGCCCTGGAGGTGTGTGGAGTGAAGAGGATGTGGACAACTTCTCCTATTGTGGTGCACCAGAGCCAACACCCAAGGAGCAGGTGTACACAGAGATAGTCGATGACCTGCGGGGTAGTGACCCATATATTGGGTCAAGATCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAAGCCAGGAGACATATTGAACCTTGGGCGCTATTGTGAGGAGTCTGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E314799" ref_strand="+" ref_description="SGN-E314799 [cTOA-20-J7]">
      <seq>gcagtgaagagaaaaatataatactcttaacactggggcctctcatggcgtagcgtgggtttgactatgtttgcagccttttgttttcctttcccaatttcatatcgagtttaggctgcttgtgtgagaaatatggatcgagcaaggttaaataaaagaacccattgctcaggttcaacaccgtcagaggagtcagccttagatcttgaaaaatactgttgcagttattctaatcttccttcacttagtccaccaacacttcaaccttatgcatcggctggacaacactctgagagtaatgctgcatacttctcctggcctagtcggctaaatgatgctgctgaagagagagcaaactatttcggaaatcttcagaaaggggttttgccagaaactcttggccgattgcccgaggggcagcgagcaacaaccttacttgacctcatgactataagggcatctcatagcaaactcttgcgttgctacagtctcggtacagcaattggttttcgtattcgacgtggtgttttgactgatataccagcaatactagtgtttgtatcccggaaagttcacaaacnatggcttagtccaatccagtgtctacctactgctttaagggccctggaggtgtgtggtgtgaagtggatgtggtcgagttctcctattttggtgcaccagagccaacacccaaggagcagttgtacacagagatagtcgatgacctgcggggtagtgacccatatattggttcaggatctcaggtagcaagccaggagacatatggaaccttgggcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="26533" stop="22890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26233" g_stop="26106" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26105" i_stop="24991" i_length="1115">
            <donor d_prob="0.876" d_score="1.00"/>
            <acceptor a_prob="0.806" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24990" g_stop="24498" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="620" r_length="492" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24497" i_stop="24180" i_length="318">
            <donor d_prob="0.926" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24179" g_stop="24036" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="764" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24035" i_stop="23225" i_length="811">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23224" g_stop="23190" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="765" r_stop="799" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E314799" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26233" e_stop="26106"/>
          <exon e_start="24990" e_stop="24498"/>
          <exon e_start="24179" e_stop="24036"/>
          <exon e_start="23224" e_stop="23190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTGAAGAGAAAAATATAATACTCTTAACACTGGGGCCTCTCATGGCGTAGCGTGGGTTTGACTATGTTTGCAGCCTTTTGTTTTCCTTTCCCAATTTCATATCGAGTTTAGGCTGCTTGTGTGAGGTAAAAAAACTCATCTTTTTTTTCCTCTCGAAGAATCCATCACTATTGCGATTGATCTTCCTTTTTTCACTTTCTCTTCTTCATGCAGAGATATCTTCACACGCCCATGTTTTTTTTTTGAATTTTCCAGGACCCCATTAATTTTGTTCCCTCAATTTGTACTGTGCACAATCGTTATCAAAATAAGTGCTTTTTCAATATTACTGTATTTATTATCCGTTTTTCCTCTCAAGTGTTTCTTTTCACTTTTCCTGTTCCTGGTTTTGTTGCTTTTCCTTGGTTATATATGTTTGGCTGAGAACTTTTTGTTTTTATTTCCGTTGTTGGAGAAATAGGATATATTGGACCTCACCTAGTTTGGGATTGAAGCATAGTTATTGACATATTGTTGATTGATTATGGTTGTTGTTGAACTTATTATCTATTTCTGTTGAGAAAGATACCTGTTTTCTTAGGGCCATGTTGATTGTTGAGGCAGTTTTATCATCTTATGAAGTTCATTCTTTCAGATTTTAAAGTAGCTGAGAGAAATGATGTGATGGATAATATTGTTGTAAGCTGTGGCTAACTAAAGGAAAAAAAAATCTTGCCATGTTTATCTGGTGCTATAACACATTTGATGGATCTAAATAGCTTTCAAATTGCTTACCATTCACTTTATACAGTCTATATTGTCATGACTTGTATTGGACTGGAACAATAAAGTTACTCAAGGCCAGCAGTGCTACAGTTTCTTTTTATCATTTGGATCTTTTCTACAGTCTTCCCTTTGGTGATGTTAACAATATTATATTCAGTGGATATGTGCGTTTTGGCTGTATGGATTTCCATTTTCATTTTTGAGACTGAGTTTACTGGATATTGTTAAATCTTTTAAATAACGTTGCAGCTTTAATTAAAGAAACATGTGAAACAAATTGGAATTTATGCTAAATTATTGCATTGGCCGTTCTCTGTGGTTCGAACACTGTTCTTCCTTTATCAGTTTTGACATAGATTACTAGAGCATACCTCTATGATAGCAAAGATCTTGTCCTTGAAAGTCAGACTTTAGGGTAAATTTTTGGTTTTCTTCCTGTTGGACTTTGAATAACAAGTTTGTCAACTATGAGCAGAAATATGGATCGAGCAAGGTTAAATAAAAGAACCCATTGCTCAGGTTCAACACCGTCAGAGGAGTCAGCCTTAGATCTTGAAAAATACTGTTGCAGTTATTCTAATCTTCCTTCACTTAGTCCACCAACACTTCAACCTTATGCATCGGCTGGACAACACTCTGAGAGTAATGCTGCATACTTCTCCTGGCCTAGTCGGCTAAATGATGCTGCTGAAGAGAGAGCAAACTATTTCGGAAATCTTCAGAAAGGGGTTTTGCCAGAAACTCTTGGCCGATTGCCCGAGGGGCAGCGAGCAACAACCTTACTTGACCTCATGACTATAAGGGCATCTCATAGCAAACTCTTGCGTTGCTACAGTCTCGGTACAGCAATTGGTTTTCGTATTCGACGTGGTGTTTTGACTGATATACCAGCAATACTAGTGTTTGTATCCCGGAAAGTTCACAAACAATGGCTTAGTCCAATCCAGTGTCTACCTACTGCTTTAGAGGTGATCAAAAAGATGCCTAATTATCTCTTATCCTATTTCTGTCACCCTCTCGTGAAAGATTTTCCTGAATTAGGACAAAAAAAGATGACGAGACTTTACTTCCTTATAAAAACAAAAGAGGATGAAATTTACTTCATTGATTTTCTTTTATCTTCTCTTGCTGTATTCCTCCCCGTCACTTTTCCTGATAGGGATTGTTCAATTGTGTGAGTTTAACTATTATTAGAGCCCAAAGAATCAACACTTGCTAACAAATGTTATTCTTGCATCATTTATTCCTTAGTTTTCTCTATGCTTAAATATGTTACTTATCATCAGGGCCCTGGAGGTGTGTGGTGTGAAGTGGATGTGGTCGAGTTCTCCTATTTTGGTGCACCAGAGCCAACACCCAAGGAGCAGTTGTACACAGAGATAGTCGATGACCTGCGGGGTAGTGACCCATATATTGGTTCAGGATCTCAGGTAGTTTGATGTTTATCACAACTTTTCACTCTAAAGATGCTTTGATTGAGTTTTGATGAGTTCATAAGAGAGTTGAAGTCTAAGTCGAGTCCTAGAAAATGTATCAATCAATTTTCAAATCACGTAGGTTGGGCAAATTTATGGCAAGTATTGCTATTTTCATGAGTCTTGTTAGTAGATCGACTCTAAGCATCTTGCATAAAAGTTAAAACAACTATTTGGGTGTGGCAGATCCTTGGAGCCATCTGCTTCTTTGCTTCTGAGCACATTTTGTATTTTTCTGAAGTGCTTATCATTCAGTATCGGAACTGGATTTATGCTTACCATATTTTTCTGAAACTATGCAGCAAGGACAACTTATGTTAGTCTTATGTACTAAAAGGCATCTACTAATTTTGAAAAGGTTGGAAGAAATGGATGATGATTTCCTGTAATGTGTCTAAGAGCCCATAAACTTTATATGTGCACAAAGACACTTTTTAACACCTTTCTCCATTGTTTGGTTAGACTCACATCCTTTCTGAGTGAATTGGTTAGTCATCAAATCAGTTGAGTTCCTTTGAAATCTCCAGCAAAGGTTAAATACATTATAAGGGACTCGGGGAAAGGTTTTGTTTGTCAACAAGTTAGTTGAGCTTCTTTGTTGAGATCTCCAGTCGTTTTTAATTGCATCTTAGGAAGATAAACAATTAAAGAGTCTGCAGAAGAAATCAGATGTAAACTACTTGTTTGGCTTGTCATTTCTTTCTTCCCTAAGGTTATCACTCTGATCGTACATGTTAATTCACCACATTTTATTGGAAACATCTAGGTAGCAAGCCAGGAGACATATGGAACCTTGGGCGC</genome_strand>
        <mrna_strand>GCAGTGAAGAGAAAAATATAATACTCTTAACACTGGGGCCTCTCATGGCGTAGCGTGGGTTTGACTATGTTTGCAGCCTTTTGTTTTCCTTTCCCAATTTCATATCGAGTTTAGGCTGCTTGTGTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATATGGATCGAGCAAGGTTAAATAAAAGAACCCATTGCTCAGGTTCAACACCGTCAGAGGAGTCAGCCTTAGATCTTGAAAAATACTGTTGCAGTTATTCTAATCTTCCTTCACTTAGTCCACCAACACTTCAACCTTATGCATCGGCTGGACAACACTCTGAGAGTAATGCTGCATACTTCTCCTGGCCTAGTCGGCTAAATGATGCTGCTGAAGAGAGAGCAAACTATTTCGGAAATCTTCAGAAAGGGGTTTTGCCAGAAACTCTTGGCCGATTGCCCGAGGGGCAGCGAGCAACAACCTTACTTGACCTCATGACTATAAGGGCATCTCATAGCAAACTCTTGCGTTGCTACAGTCTCGGTACAGCAATTGGTTTTCGTATTCGACGTGGTGTTTTGACTGATATACCAGCAATACTAGTGTTTGTATCCCGGAAAGTTCACAAACNATGGCTTAGTCCAATCCAGTGTCTACCTACTGCTTTA-AG..............................................................................................................................................................................................................................................................................................................................GGCCCTGGAGGTGTGTGGTGTGAAGTGGATGTGGTCGAGTTCTCCTATTTTGGTGCACCAGAGCCAACACCCAAGGAGCAGTTGTACACAGAGATAGTCGATGACCTGCGGGGTAGTGACCCATATATTGGTTCAGGATCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAAGCCAGGAGACATATGGAACCTTGGGCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E299753" ref_strand="+" ref_description="SGN-E299753 [cLEW-1-L4]">
      <seq>gcttgtgtgagaaatatggatcgagcaaggttaaataaaagaacccattgctcaggttcaacaccgtcagaggagtcagccttagatcttgaaaaatactgttgcagttattctaatcttccttcacttagtccaccaacacttcaaccttatgcatcggctggacaacactctgagagtaatgctgcatacttctcctggcctagtcggctaaatgatgctgctgaagagagagcaaactatttcggaaatcttcagaaaggggttttgccagaaactcttggccgattgcccgaggggcagcgagcaacaaccttacttgacctcatgactataagggcatctcatagcaaactcttgcgttgctacagtctcggtacagcaattggttttcgtattcgacgtggtgttttgactgatataccagcaatactagtgtttgtatcccggaaagttcacaaacaatggcttagtccaatccagtgtctacctactgctttagagggccctggaggtgtgtggtgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="25299" stop="23857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24990" g_stop="24498" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="504" r_length="493" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24497" i_stop="24180" i_length="318">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24179" g_stop="24157" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="527" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E299753" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24990" e_stop="24498"/>
          <exon e_start="24179" e_stop="24157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATGGATCGAGCAAGGTTAAATAAAAGAACCCATTGCTCAGGTTCAACACCGTCAGAGGAGTCAGCCTTAGATCTTGAAAAATACTGTTGCAGTTATTCTAATCTTCCTTCACTTAGTCCACCAACACTTCAACCTTATGCATCGGCTGGACAACACTCTGAGAGTAATGCTGCATACTTCTCCTGGCCTAGTCGGCTAAATGATGCTGCTGAAGAGAGAGCAAACTATTTCGGAAATCTTCAGAAAGGGGTTTTGCCAGAAACTCTTGGCCGATTGCCCGAGGGGCAGCGAGCAACAACCTTACTTGACCTCATGACTATAAGGGCATCTCATAGCAAACTCTTGCGTTGCTACAGTCTCGGTACAGCAATTGGTTTTCGTATTCGACGTGGTGTTTTGACTGATATACCAGCAATACTAGTGTTTGTATCCCGGAAAGTTCACAAACAATGGCTTAGTCCAATCCAGTGTCTACCTACTGCTTTAGAGGTGATCAAAAAGATGCCTAATTATCTCTTATCCTATTTCTGTCACCCTCTCGTGAAAGATTTTCCTGAATTAGGACAAAAAAAGATGACGAGACTTTACTTCCTTATAAAAACAAAAGAGGATGAAATTTACTTCATTGATTTTCTTTTATCTTCTCTTGCTGTATTCCTCCCCGTCACTTTTCCTGATAGGGATTGTTCAATTGTGTGAGTTTAACTATTATTAGAGCCCAAAGAATCAACACTTGCTAACAAATGTTATTCTTGCATCATTTATTCCTTAGTTTTCTCTATGCTTAAATATGTTACTTATCATCAGGGCCCTGGAGGTGTGTGGTGTGA</genome_strand>
        <mrna_strand>AAATATGGATCGAGCAAGGTTAAATAAAAGAACCCATTGCTCAGGTTCAACACCGTCAGAGGAGTCAGCCTTAGATCTTGAAAAATACTGTTGCAGTTATTCTAATCTTCCTTCACTTAGTCCACCAACACTTCAACCTTATGCATCGGCTGGACAACACTCTGAGAGTAATGCTGCATACTTCTCCTGGCCTAGTCGGCTAAATGATGCTGCTGAAGAGAGAGCAAACTATTTCGGAAATCTTCAGAAAGGGGTTTTGCCAGAAACTCTTGGCCGATTGCCCGAGGGGCAGCGAGCAACAACCTTACTTGACCTCATGACTATAAGGGCATCTCATAGCAAACTCTTGCGTTGCTACAGTCTCGGTACAGCAATTGGTTTTCGTATTCGACGTGGTGTTTTGACTGATATACCAGCAATACTAGTGTTTGTATCCCGGAAAGTTCACAAACAATGGCTTAGTCCAATCCAGTGTCTACCTACTGCTTTAGAG..............................................................................................................................................................................................................................................................................................................................GGCCCTGGAGGTGTGTGGTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E338341" ref_strand="+" ref_description="SGN-E338341 [cTOE-13-D14]">
      <seq>tagcgtgggtttgactatgtttgcagccttttgttttcctttcccaatttcatatcgagtttaggctgcttgtgtgagaaatatggatcgagcaaggttaaataaaagaacccattgctcaggttcaacaccgtcagaggagtcagccttagatcttgaaaaatactgttgcagttattctaatcttccttcacttagtccaccaacacttcaaccttatgcatcggctggacaacactctgagagtaatgctgcatacttctcctggcctagtcggctaaatgatgctgctgaagagagagcaaactatttcggaaatcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="26483" stop="24446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26183" g_stop="26106" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26105" i_stop="24991" i_length="1115">
            <donor d_prob="0.876" d_score="1.00"/>
            <acceptor a_prob="0.806" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24990" g_stop="24746" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="323" r_length="245" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E338341" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26183" e_stop="26106"/>
          <exon e_start="24990" e_stop="24746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCGTGGGTTTGACTATGTTTGCAGCCTTTTGTTTTCCTTTCCCAATTTCATATCGAGTTTAGGCTGCTTGTGTGAGGTAAAAAAACTCATCTTTTTTTTCCTCTCGAAGAATCCATCACTATTGCGATTGATCTTCCTTTTTTCACTTTCTCTTCTTCATGCAGAGATATCTTCACACGCCCATGTTTTTTTTTTGAATTTTCCAGGACCCCATTAATTTTGTTCCCTCAATTTGTACTGTGCACAATCGTTATCAAAATAAGTGCTTTTTCAATATTACTGTATTTATTATCCGTTTTTCCTCTCAAGTGTTTCTTTTCACTTTTCCTGTTCCTGGTTTTGTTGCTTTTCCTTGGTTATATATGTTTGGCTGAGAACTTTTTGTTTTTATTTCCGTTGTTGGAGAAATAGGATATATTGGACCTCACCTAGTTTGGGATTGAAGCATAGTTATTGACATATTGTTGATTGATTATGGTTGTTGTTGAACTTATTATCTATTTCTGTTGAGAAAGATACCTGTTTTCTTAGGGCCATGTTGATTGTTGAGGCAGTTTTATCATCTTATGAAGTTCATTCTTTCAGATTTTAAAGTAGCTGAGAGAAATGATGTGATGGATAATATTGTTGTAAGCTGTGGCTAACTAAAGGAAAAAAAAATCTTGCCATGTTTATCTGGTGCTATAACACATTTGATGGATCTAAATAGCTTTCAAATTGCTTACCATTCACTTTATACAGTCTATATTGTCATGACTTGTATTGGACTGGAACAATAAAGTTACTCAAGGCCAGCAGTGCTACAGTTTCTTTTTATCATTTGGATCTTTTCTACAGTCTTCCCTTTGGTGATGTTAACAATATTATATTCAGTGGATATGTGCGTTTTGGCTGTATGGATTTCCATTTTCATTTTTGAGACTGAGTTTACTGGATATTGTTAAATCTTTTAAATAACGTTGCAGCTTTAATTAAAGAAACATGTGAAACAAATTGGAATTTATGCTAAATTATTGCATTGGCCGTTCTCTGTGGTTCGAACACTGTTCTTCCTTTATCAGTTTTGACATAGATTACTAGAGCATACCTCTATGATAGCAAAGATCTTGTCCTTGAAAGTCAGACTTTAGGGTAAATTTTTGGTTTTCTTCCTGTTGGACTTTGAATAACAAGTTTGTCAACTATGAGCAGAAATATGGATCGAGCAAGGTTAAATAAAAGAACCCATTGCTCAGGTTCAACACCGTCAGAGGAGTCAGCCTTAGATCTTGAAAAATACTGTTGCAGTTATTCTAATCTTCCTTCACTTAGTCCACCAACACTTCAACCTTATGCATCGGCTGGACAACACTCTGAGAGTAATGCTGCATACTTCTCCTGGCCTAGTCGGCTAAATGATGCTGCTGAAGAGAGAGCAAACTATTTCGGAAATCTTC</genome_strand>
        <mrna_strand>TAGCGTGGGTTTGACTATGTTTGCAGCCTTTTGTTTTCCTTTCCCAATTTCATATCGAGTTTAGGCTGCTTGTGTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATATGGATCGAGCAAGGTTAAATAAAAGAACCCATTGCTCAGGTTCAACACCGTCAGAGGAGTCAGCCTTAGATCTTGAAAAATACTGTTGCAGTTATTCTAATCTTCCTTCACTTAGTCCACCAACACTTCAACCTTATGCATCGGCTGGACAACACTCTGAGAGTAATGCTGCATACTTCTCCTGGCCTAGTCGGCTAAATGATGCTGCTGAAGAGAGAGCAAACTATTTCGGAAATCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E325723" ref_strand="+" ref_description="SGN-E325723 [cTOC-15-J21]">
      <seq>ttttttttcctctcgaagaatccatcactattgcgattgatcttccttttttcactttctcttcttcatgcagagatatcttcacacgcccatgttttttttttgaattttccaggaccccattaattttgttccctcaatttgtactgtgcacaatcgttatcaaaataagtgctttttcaatattactgtatttattatccgtttttcctctcaagtgtttcttttcacttttcctgttcctggatttgatgcttttccttggttatatatgtgtggctgagaactttttgtttttatttccgttgttggagaaatacgatatattggacctcacctagtttgggattgaagcatagttattgacatattgctgattgattatggctgttgttgaacttattatctatttctgttgagaaagatacctgttttcttagggccatgttgattgttgaggcagacctatcatcttatgaaggtcattctttcagattttaaagtagctgatagaaatgatgtgatggataatattgttgtaagctgtggctaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="26390" stop="25236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26090" g_stop="25536" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E325723" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26090" e_stop="25536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTCCTCTCGAAGAATCCATCACTATTGCGATTGATCTTCCTTTTTTCACTTTCTCTTCTTCATGCAGAGATATCTTCACACGCCCATGTTTTTTTTTTGAATTTTCCAGGACCCCATTAATTTTGTTCCCTCAATTTGTACTGTGCACAATCGTTATCAAAATAAGTGCTTTTTCAATATTACTGTATTTATTATCCGTTTTTCCTCTCAAGTGTTTCTTTTCACTTTTCCTGTTCCTGGTTTTGTTGCTTTTCCTTGGTTATATATGTTTGGCTGAGAACTTTTTGTTTTTATTTCCGTTGTTGGAGAAATAGGATATATTGGACCTCACCTAGTTTGGGATTGAAGCATAGTTATTGACATATTGTTGATTGATTATGGTTGTTGTTGAACTTATTATCTATTTCTGTTGAGAAAGATACCTGTTTTCTTAGGGCCATGTTGATTGTTGAGGCAGTTTTATCATCTTATGAAGTTCATTCTTTCAGATTTTAAAGTAGCTGAGAGAAATGATGTGATGGATAATATTGTTGTAAGCTGTGGCTAACT</genome_strand>
        <mrna_strand>TTTTTTTTCCTCTCGAAGAATCCATCACTATTGCGATTGATCTTCCTTTTTTCACTTTCTCTTCTTCATGCAGAGATATCTTCACACGCCCATGTTTTTTTTTTGAATTTTCCAGGACCCCATTAATTTTGTTCCCTCAATTTGTACTGTGCACAATCGTTATCAAAATAAGTGCTTTTTCAATATTACTGTATTTATTATCCGTTTTTCCTCTCAAGTGTTTCTTTTCACTTTTCCTGTTCCTGGATTTGATGCTTTTCCTTGGTTATATATGTGTGGCTGAGAACTTTTTGTTTTTATTTCCGTTGTTGGAGAAATACGATATATTGGACCTCACCTAGTTTGGGATTGAAGCATAGTTATTGACATATTGCTGATTGATTATGGCTGTTGTTGAACTTATTATCTATTTCTGTTGAGAAAGATACCTGTTTTCTTAGGGCCATGTTGATTGTTGAGGCAGACCTATCATCTTATGAAGGTCATTCTTTCAGATTTTAAAGTAGCTGATAGAAATGATGTGATGGATAATATTGTTGTAAGCTGTGGCTAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E328251" ref_strand="+" ref_description="SGN-E328251 [cTOC-21-H23]">
      <seq>tttccatctctgcaatattcatcttctctatatcatattttagtttttttttaattaatgaaaccaagaaggaaggaagaaattaagagaagatgaagaagctgaatttgttattgaggaagtgtaagactttgtcaaggcaactaggaagaagctcatcttatagtagtttaaggtcaaaatctgcaagagaagatttttggaatgtggaagataatatggaagattttgagacaattcttgttggcaactcaagaaggaaatatgtcataaaatcaaaatacttgagccatccactattgaatgctctaatagagaaatcaaagcaaaagcatggggaaaaagatcatctttccgttaagtgtgaagttgtgctttttgatcatcttctctgggtacttgaaaatgctgatcctatcaaccttaattctgattcatttgaggaattggctgatctatatgctgtttaatgtgaataattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="27895" stop="26814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27595" g_stop="27114" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E328251" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27595" e_stop="27114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCATCTCTGCAATATTCATCTTCTCTATATCATATTTAAGTTTTTTTTTAATTAATGAAACCAAGAAGGAAGGAAGAAATTAAGAGAAGATGAAGAAGCTGAATTTGTTATTGAGGAAGTGTAAGACTTTGTCAAGGCAACTAGGAAGAAGCTCATCTTATAGTAGTTTAAGGTCAAAATCTGCAAGAGAAGATTTTTGGAATGTGGAAGATAATATGGAAGATTTTGAGACAATTCTTGTTGGCAACTCAAGAAGGAAATATGTCATAAAATCAAAATACTTGAGCCATCCACTATTGAATGCTCTAATAGAGAAATCAAAGCAAAAGCATGGGGAAAAAGATCATCTTTCCGTTAAGTGTGAAGTTGTGCTTTTTGATCATCTTCTCTGGTTACTTGAAAATGCTGATCCTATCAACCTTAATTCTGATTCATTTGAGGAATTGGCTGATCTATATGTTGTTTAATGTGAATAATTT</genome_strand>
        <mrna_strand>TTTCCATCTCTGCAATATTCATCTTCTCTATATCATATTTTAGTTTTTTTTTAATTAATGAAACCAAGAAGGAAGGAAGAAATTAAGAGAAGATGAAGAAGCTGAATTTGTTATTGAGGAAGTGTAAGACTTTGTCAAGGCAACTAGGAAGAAGCTCATCTTATAGTAGTTTAAGGTCAAAATCTGCAAGAGAAGATTTTTGGAATGTGGAAGATAATATGGAAGATTTTGAGACAATTCTTGTTGGCAACTCAAGAAGGAAATATGTCATAAAATCAAAATACTTGAGCCATCCACTATTGAATGCTCTAATAGAGAAATCAAAGCAAAAGCATGGGGAAAAAGATCATCTTTCCGTTAAGTGTGAAGTTGTGCTTTTTGATCATCTTCTCTGGGTACTTGAAAATGCTGATCCTATCAACCTTAATTCTGATTCATTTGAGGAATTGGCTGATCTATATGCTGTTTAATGTGAATAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E377353" ref_strand="+" ref_description="SGN-E377353 [TUS-21-I2]">
      <seq>tttttttttttggtcaagcttccaagatctatttatttatgctctcacacaaatgaaatcaacaagaaaaatgagcaatgagaaatttatgcagctaagctttcaagctatagaattatatgaatgcggactgtttggacaattcagaactcatcaaactgacaaaagttctacttttgaatcttcttctttccgtttattgcaaaaatcatattgcagaagccaactaaggcgtattggggagggtgataaggagtgaaagaattacaataatattacacaaagtcgaatgacctatggacattgaatgttacatgacgagccaaaaattgagatttgtagcagctgagtgaaaaccataaatctatctcatcagcaccagttgcagtgccttaaaattcacaaacctggctagctcataaattatatgcttcaccattaaacctcttgtagcaaaatctgctgtctcagaaatctgaatggttcaaacaaccgtgaacacaacataaaaattcgtgaaatctccttcaccaactgtttttcaattagacattgaaccggaacagcattatatccccttcttgcacaacataatcttttccttctaacctcaactgcatacacagataaatcctgtaaccagcttgatctattctcttgttgcacgggtcagtagacttagtgctcacatagaagcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="28557" stop="29858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28858" g_stop="29558" g_length="701"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="700" r_length="700" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E377353" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28858" e_stop="29558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCCTTGTTTGGTCAAGCTTCCAAGATCTATTTATTTATGCTCTCACACAAATGAAATCAACAAGAAAAATGAGCAATGAGAAATTTATGCAGCTAAGCTTTCAAGCTATAGAATTATATGAATGCGGACTGTTTGGACAATTCAGAACTCATCAAACTGACAAAAGTTCTACTTTTGAATCTTCTTCTTTCCGTTTATTGCAAAAATCATATTGCAGAAGCCAACTAAGGCGTATTGGGGAGGGTGATAAGGAGTGAAAGAATTACAATAATATTACACAAAGTCGAATGACCTATGGACATTGAATGTTACATGACGAGCCAAAAATTGAGATTTGTAGCAGCTGAGTGAAAACCATAAATCTATCTCATCAGCACCAGTTGCAGTGCCTTAAAATTCACAAACCTGGCTAGCTCATAAATTATATGCTTCACCATTAAACCTCTTGTAGCAAAATCTGCTGTCTCAGAAATCTGAATGGTTCAAACAACCGTGAACACAACATAAAAATTCGTGAAATCTCCTTCACCAACTGTTTTTCAATTAGACATTGAACCGGAACAGCATTATATCCCCTTCTTGCACAACATAATCTTTTCCTTCTAACCTCAACTGCATACACAGATAAATCCTGTAACCAGCTTGATCTATTCTCTTGTTTGCACGGGTCAGTAGACTTAGTGCTCACATAGAAGCACC</genome_strand>
        <mrna_strand>TTTTTTTTTTTGGTCAAGCTTCCAAGATCTATTTATTTATGCTCTCACACAAATGAAATCAACAAGAAAAATGAGCAATGAGAAATTTATGCAGCTAAGCTTTCAAGCTATAGAATTATATGAATGCGGACTGTTTGGACAATTCAGAACTCATCAAACTGACAAAAGTTCTACTTTTGAATCTTCTTCTTTCCGTTTATTGCAAAAATCATATTGCAGAAGCCAACTAAGGCGTATTGGGGAGGGTGATAAGGAGTGAAAGAATTACAATAATATTACACAAAGTCGAATGACCTATGGACATTGAATGTTACATGACGAGCCAAAAATTGAGATTTGTAGCAGCTGAGTGAAAACCATAAATCTATCTCATCAGCACCAGTTGCAGTGCCTTAAAATTCACAAACCTGGCTAGCTCATAAATTATATGCTTCACCATTAAACCTCTTGTAGCAAAATCTGCTGTCTCAGAAATCTGAATGGTTCAAACAACCGTGAACACAACATAAAAATTCGTGAAATCTCCTTCACCAACTGTTTTTCAATTAGACATTGAACCGGAACAGCATTATATCCCCTTCTTGCACAACATAATCTTTTCCTTCTAACCTCAACTGCATACACAGATAAATCCTGTAACCAGCTTGATCTATTCTCTTG-TTGCACGGGTCAGTAGACTTAGTGCTCACATAGAAGCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E375023" ref_strand="+" ref_description="SGN-E375023 [TUS-36-K15]">
      <seq>tttttttttttggtcaagcttccaagatctatttatttatgctctcacacaaatgaaatcaacaagaaaaatgagcaatgagaaatttatgcagctaagctttcaagctatagaattatatgaatgcggactgtttggacaattcagaactcatcaaactgacaaaagttctacttttgaatcttcttctttccgtttattgcaaaaatcatattgcagaagccaactaaggcgtattggggagggtgataaggagtgaaagaattacaataatattacacaaagtcgaatgacctatggacattgaatgttacatgacgagccaaaaattgagatttgtagcagctgagtgaaaaccataaatctatctcatcagcaccagttgcagtgccttaaaattcacaaacctggctagctcataaattatatgcttcaccattaaacctcttgtagcaaaatctgctgtctcagaaatctgaatggttcaaacaaccgtgaacacaacataaaaattcgtgaaatctccttcaccaactgtttttcaattagacattgaaccggaacagcattatatccccttcttgcacaacataatcttttccttctaacctcaactgcatacacagataaatcctgtaaccagcttgatctattctcttgtttgcacgggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="28557" stop="29829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28858" g_stop="29529" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="672" r_length="672" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E375023" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28858" e_stop="29529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCCTTGTTTGGTCAAGCTTCCAAGATCTATTTATTTATGCTCTCACACAAATGAAATCAACAAGAAAAATGAGCAATGAGAAATTTATGCAGCTAAGCTTTCAAGCTATAGAATTATATGAATGCGGACTGTTTGGACAATTCAGAACTCATCAAACTGACAAAAGTTCTACTTTTGAATCTTCTTCTTTCCGTTTATTGCAAAAATCATATTGCAGAAGCCAACTAAGGCGTATTGGGGAGGGTGATAAGGAGTGAAAGAATTACAATAATATTACACAAAGTCGAATGACCTATGGACATTGAATGTTACATGACGAGCCAAAAATTGAGATTTGTAGCAGCTGAGTGAAAACCATAAATCTATCTCATCAGCACCAGTTGCAGTGCCTTAAAATTCACAAACCTGGCTAGCTCATAAATTATATGCTTCACCATTAAACCTCTTGTAGCAAAATCTGCTGTCTCAGAAATCTGAATGGTTCAAACAACCGTGAACACAACATAAAAATTCGTGAAATCTCCTTCACCAACTGTTTTTCAATTAGACATTGAACCGGAACAGCATTATATCCCCTTCTTGCACAACATAATCTTTTCCTTCTAACCTCAACTGCATACACAGATAAATCCTGTAACCAGCTTGATCTATTCTCTTGTTTGCACGGGTC</genome_strand>
        <mrna_strand>TTTTTTTTTTTGGTCAAGCTTCCAAGATCTATTTATTTATGCTCTCACACAAATGAAATCAACAAGAAAAATGAGCAATGAGAAATTTATGCAGCTAAGCTTTCAAGCTATAGAATTATATGAATGCGGACTGTTTGGACAATTCAGAACTCATCAAACTGACAAAAGTTCTACTTTTGAATCTTCTTCTTTCCGTTTATTGCAAAAATCATATTGCAGAAGCCAACTAAGGCGTATTGGGGAGGGTGATAAGGAGTGAAAGAATTACAATAATATTACACAAAGTCGAATGACCTATGGACATTGAATGTTACATGACGAGCCAAAAATTGAGATTTGTAGCAGCTGAGTGAAAACCATAAATCTATCTCATCAGCACCAGTTGCAGTGCCTTAAAATTCACAAACCTGGCTAGCTCATAAATTATATGCTTCACCATTAAACCTCTTGTAGCAAAATCTGCTGTCTCAGAAATCTGAATGGTTCAAACAACCGTGAACACAACATAAAAATTCGTGAAATCTCCTTCACCAACTGTTTTTCAATTAGACATTGAACCGGAACAGCATTATATCCCCTTCTTGCACAACATAATCTTTTCCTTCTAACCTCAACTGCATACACAGATAAATCCTGTAACCAGCTTGATCTATTCTCTTGTTTGCACGGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E377532" ref_strand="+" ref_description="SGN-E377532 [TUS-20-D1]">
      <seq>tttttttttttggtcaagcttccaagatctatttatttatgctctcacacaaatgaaatcaacaagaaaaatgagcaatgagaaatttatgcagctaagctttcaagctatagaattatatgaatgcggactgtttggacaattcagaactcatcaaactgacaaaagttctacttttgaatcttcttctttccgtttattgcaaaaatcatattgcagaagccaactaaggcgtattggggagggtgataaggagtgaaagaattacaataatattacacaaagtcgaatgacctatggacattgaatgttacatgacgagccaaaaattgagatttgtagcagctgagtgaaaaccataaatctatctcatcagcaccagttgcagtgccttaaaattcacaaacctggctagctcataaattatatgcttcaccattaaacctcttgtagcaaaatctgctgtctcagaaatctgaatggttcaaacaaccgtgaacacaacataaaaattcgtgaaatctccttcaccaactgtttttcaattagacattgaaccggaacagcattatatccccttcttgcacaacataatcttttccttcttacctcaactgcatacacagataaatcctgtaaccagcttgatctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="28557" stop="29810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28858" g_stop="29510" g_length="653"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E377532" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28858" e_stop="29510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCCTTGTTTGGTCAAGCTTCCAAGATCTATTTATTTATGCTCTCACACAAATGAAATCAACAAGAAAAATGAGCAATGAGAAATTTATGCAGCTAAGCTTTCAAGCTATAGAATTATATGAATGCGGACTGTTTGGACAATTCAGAACTCATCAAACTGACAAAAGTTCTACTTTTGAATCTTCTTCTTTCCGTTTATTGCAAAAATCATATTGCAGAAGCCAACTAAGGCGTATTGGGGAGGGTGATAAGGAGTGAAAGAATTACAATAATATTACACAAAGTCGAATGACCTATGGACATTGAATGTTACATGACGAGCCAAAAATTGAGATTTGTAGCAGCTGAGTGAAAACCATAAATCTATCTCATCAGCACCAGTTGCAGTGCCTTAAAATTCACAAACCTGGCTAGCTCATAAATTATATGCTTCACCATTAAACCTCTTGTAGCAAAATCTGCTGTCTCAGAAATCTGAATGGTTCAAACAACCGTGAACACAACATAAAAATTCGTGAAATCTCCTTCACCAACTGTTTTTCAATTAGACATTGAACCGGAACAGCATTATATCCCCTTCTTGCACAACATAATCTTTTCCTTCTAACCTCAACTGCATACACAGATAAATCCTGTAACCAGCTTGATCTAT</genome_strand>
        <mrna_strand>TTTTTTTTTTTGGTCAAGCTTCCAAGATCTATTTATTTATGCTCTCACACAAATGAAATCAACAAGAAAAATGAGCAATGAGAAATTTATGCAGCTAAGCTTTCAAGCTATAGAATTATATGAATGCGGACTGTTTGGACAATTCAGAACTCATCAAACTGACAAAAGTTCTACTTTTGAATCTTCTTCTTTCCGTTTATTGCAAAAATCATATTGCAGAAGCCAACTAAGGCGTATTGGGGAGGGTGATAAGGAGTGAAAGAATTACAATAATATTACACAAAGTCGAATGACCTATGGACATTGAATGTTACATGACGAGCCAAAAATTGAGATTTGTAGCAGCTGAGTGAAAACCATAAATCTATCTCATCAGCACCAGTTGCAGTGCCTTAAAATTCACAAACCTGGCTAGCTCATAAATTATATGCTTCACCATTAAACCTCTTGTAGCAAAATCTGCTGTCTCAGAAATCTGAATGGTTCAAACAACCGTGAACACAACATAAAAATTCGTGAAATCTCCTTCACCAACTGTTTTTCAATTAGACATTGAACCGGAACAGCATTATATCCCCTTCTTGCACAACATAATCTTTTCCTTCTTACCTCAACTGCATACACAGATAAATCCTGTAACCAGCTTGATCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E232130" ref_strand="-" ref_description="SGN-E232130 [cLEL-5-A5]">
      <seq>agcatataatttatgagctagccaggtttgtgaattttaaggcactgcaactggtgctgatgagatagatttatggttttcactcagctgctacaaatctcaatttttggctcgtcatgtaacattcaatgtccataggtcattcgactttgtgtaatattattgtaattctttcactccttatcaccctccccaatacgccttagttggcttctgcaatatgatttttgcaataaacggaaagaagaagattcaaaagtagaacttttgtcagtttgatgagttctgaattgtccaaacagtccgcatacatataattctatagcttgaaagcttagctacataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="29589" stop="28643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29289" g_stop="28944" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="346" r_length="346" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="347" polyA_stop="362"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E232130" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>346</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232130" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="29289" e_stop="28944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATATAATTTATGAGCTAGCCAGGTTTGTGAATTTTAAGGCACTGCAACTGGTGCTGATGAGATAGATTTATGGTTTTCACTCAGCTGCTACAAATCTCAATTTTTGGCTCGTCATGTAACATTCAATGTCCATAGGTCATTCGACTTTGTGTAATATTATTGTAATTCTTTCACTCCTTATCACCCTCCCCAATACGCCTTAGTTGGCTTCTGCAATATGATTTTTGCAATAAACGGAAAGAAGAAGATTCAAAAGTAGAACTTTTGTCAGTTTGATGAGTTCTGAATTGTCCAAACAGTCCGCATTCATATAATTCTATAGCTTGAAAGCTTAGCTGCATAA</genome_strand>
        <mrna_strand>AGCATATAATTTATGAGCTAGCCAGGTTTGTGAATTTTAAGGCACTGCAACTGGTGCTGATGAGATAGATTTATGGTTTTCACTCAGCTGCTACAAATCTCAATTTTTGGCTCGTCATGTAACATTCAATGTCCATAGGTCATTCGACTTTGTGTAATATTATTGTAATTCTTTCACTCCTTATCACCCTCCCCAATACGCCTTAGTTGGCTTCTGCAATATGATTTTTGCAATAAACGGAAAGAAGAAGATTCAAAAGTAGAACTTTTGTCAGTTTGATGAGTTCTGAATTGTCCAAACAGTCCGCATACATATAATTCTATAGCTTGAAAGCTTAGCTACATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E232630" ref_strand="-" ref_description="SGN-E232630 [cLEL-5-A5]">
      <seq>agcatataatttatgagctagccaggtttgtgaattttaaggcactgcaactggtgctgatgagatagatttatggttttcactcagctgctacaaatctcaatttttggctcgtcatgtaacattcaatgtccataggtcattcgactttgtgtaatattattgtaattctttcactccttatcaccctccccaatacgccttagttggcttctgcaatatgatttttgcaataaacggaaagaagaagattcaaaagtagaacttttgtcagtttgatgagttctgaattgtccaaacagtccgcattcatataattctatagcttgaaagcttagctgcataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="29589" stop="28643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29289" g_stop="28944" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="346" r_length="346" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="347" polyA_stop="362"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E232630" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>346</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232630" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="29289" e_stop="28944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATATAATTTATGAGCTAGCCAGGTTTGTGAATTTTAAGGCACTGCAACTGGTGCTGATGAGATAGATTTATGGTTTTCACTCAGCTGCTACAAATCTCAATTTTTGGCTCGTCATGTAACATTCAATGTCCATAGGTCATTCGACTTTGTGTAATATTATTGTAATTCTTTCACTCCTTATCACCCTCCCCAATACGCCTTAGTTGGCTTCTGCAATATGATTTTTGCAATAAACGGAAAGAAGAAGATTCAAAAGTAGAACTTTTGTCAGTTTGATGAGTTCTGAATTGTCCAAACAGTCCGCATTCATATAATTCTATAGCTTGAAAGCTTAGCTGCATAA</genome_strand>
        <mrna_strand>AGCATATAATTTATGAGCTAGCCAGGTTTGTGAATTTTAAGGCACTGCAACTGGTGCTGATGAGATAGATTTATGGTTTTCACTCAGCTGCTACAAATCTCAATTTTTGGCTCGTCATGTAACATTCAATGTCCATAGGTCATTCGACTTTGTGTAATATTATTGTAATTCTTTCACTCCTTATCACCCTCCCCAATACGCCTTAGTTGGCTTCTGCAATATGATTTTTGCAATAAACGGAAAGAAGAAGATTCAAAAGTAGAACTTTTGTCAGTTTGATGAGTTCTGAATTGTCCAAACAGTCCGCATTCATATAATTCTATAGCTTGAAAGCTTAGCTGCATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E746562" ref_strand="+" ref_description="SGN-E746562 [GI|47104188]">
      <seq>tttgtttcattttcccaaatttttgggctcaaatacaattttggtgcaattatttgggtaattttctaatttacatgtagcgtcgtcgctgagttaaacccgagaaatatttgtagttgtagcacggcgatagatagccgcaacgctgtgtgtaccactcaataagcacttcaacttgctagtggtaaaatggcgagaatggcttgctctcagcttcttccttccatggcaattccgctcaagtcttctttcctcaatggttcttctcaccagtggttacgactctcagaatctacgcatcctgtggtactcatcaaaaggcgcttctccgtcgctaagataagcatgagtttgcgagctggcatcgttggccttcctaatgtcggcaagtccacgctgttcaacgccgtcgttgagaatggaaaggctcaggctgctaattttcctttttgcacaatagagccaaatgtagggatagtcgctgtccctgatacacgtctccatgttctttctgatataagcaaatccaaacgagcggtcccggcttcgatagagtttgttgatattgctggacttgtaaagggagccagtcaaggggagggcctggggaataagttcttgtcacatatacgtgaagtggactccatacttcaggtagtacgttgttttgaggacaatgacattgttcatgtgaatgggaaggttgagccaaaagctgatattgatgtaatcaacttggaattaattttctcagatttggatcagattgagaaaagaatggagaaactcaaaaaaggtagagctaaagattcacaagctaaagtaaaggaggaagcagaaaagtctgccttggagaaaatacaacaagcactactggatggaaaaccagcacgatcagtatctttgtcggagtttgaaaaggatgctataacacaactttgtcttctaacaatgaagcctgtcatatttgtggcaaatgtagcggaatcagaggtagctgaacctgaaaataatcctcatgtgaaggaagtaattaaaaaagctgctgagttaaattctggtgtggtaactatttcagcgcaggttgagtctgagctatctgaacttcctttagaagaaagaatagaatatttgaaatcgcttggtgtcaatgaaagtggccttggaaatctcatcagagaaacttatggtctcctagggttgcgtacatacttcacttctggcgagaaggaaaccaaagcatggaccatcctcacaggaatgactgctcctcaagcagctggggttattcactccgactttgaaaagggcttcatcagggcagagacggttgcttacgatgactttgtttctgctggttcttttgcagctgcaagggagaaaggactgttgaggttagaaggaaaagattatgttgtgcaagaaggggatataatgctgttccggttcaatgtctaattgaaaaacagttggtgaaggagatttcacgaatttttatgttgtgttcacggttgtttgaaccattcagatttctgagacagcagattttgctacaagaggtttaatggtgaagcatataatttatgagctagccaggtttgtgaattttaaggcactgcaactggtgctgatgagatagatttatggttttcactcagctgctacaaatctcaatttttggctcgtcatgtaacattcaatgtccataggtcattcgactttgtgtaatattattgtaattctttcactccttatcaccctccccaatacgccttagttggcttctgcaatatgatttttgcaataaacggaaagaagaagattcaaaagtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="37687" stop="28726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37387" g_stop="36977" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36976" i_stop="35992" i_length="985">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35991" g_stop="35803" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="600" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35802" i_stop="35677" i_length="126">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35676" g_stop="35623" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="654" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35622" i_stop="34316" i_length="1307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34315" g_stop="34205" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="765" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34204" i_stop="33829" i_length="376">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33828" g_stop="33766" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="766" r_stop="828" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33765" i_stop="33618" i_length="148">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33617" g_stop="33363" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="829" r_stop="1083" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33362" i_stop="32862" i_length="501">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32861" g_stop="32715" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1084" r_stop="1230" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="32714" i_stop="32610" i_length="105">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="32609" g_stop="32582" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1231" r_stop="1258" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="32581" i_stop="31687" i_length="895">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="31686" g_stop="31616" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1259" r_stop="1329" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="31615" i_stop="30363" i_length="1253">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="30362" g_stop="30303" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1330" r_stop="1389" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="30302" i_stop="29472" i_length="831">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="29471" g_stop="29032" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1390" r_stop="1829" r_length="440" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1832" polyA_stop="1846"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E746562" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1829</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37387" e_stop="36977"/>
          <exon e_start="35991" e_stop="35803"/>
          <exon e_start="35676" e_stop="35623"/>
          <exon e_start="34315" e_stop="34205"/>
          <exon e_start="33828" e_stop="33766"/>
          <exon e_start="33617" e_stop="33363"/>
          <exon e_start="32861" e_stop="32715"/>
          <exon e_start="32609" e_stop="32582"/>
          <exon e_start="31686" e_stop="31616"/>
          <exon e_start="30362" e_stop="30303"/>
          <exon e_start="29471" e_stop="29032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTTCATTTTCCCAAATTTTTGGGCTCAAATACAATTTTGGTGCAATTATTTGGGTAATTTTCTAATTTACATGTAGCGTCGTCGCTGAGTTAAACCCGAGAAATATTTGTAGTTGTAGCACGGCGATAGATAGCCGCAACGCTGTGTGTACCACTCAATAAGCACTTCAACTTGCTAGTGGTAAAATGGCGAGAATGGCTTGCTCTCAGCTTCTTCCTTCCATGGCAATTCCGCTCAAGTCTTCTTTCCTCAATGGTTCTTCTCACCAGTGGTTACGACTCTCAGAATCTACGCATCCTGTGGTACTCATCAAAAGGCGCTTCTCCGTCGCTAAGATAAGCATGAGTTTGCGAGCTGGCATCGTTGGCCTTCCTAATGTCGGCAAGTCCACGCTGTTCAACGCCGTCGTAAGTCTATTTTCACAATATATTTTCTTCTGCAAAGACGCAATTGAATGCTTACCCCATATATTTGTAGAAATGCCGATAGTCTTGCAATTGAAGCTCAGAAAATGGACGTGGAAGCTTAATAATTTAACTACAAGTATGAGTGTGTAGTGAGTTAGATGTTTACTGGAGTGTAAGTATAGTTACTGGTCCTTCTGTCAGAAGGAATTGAAGGTAGATGCTGTTAATTTAAAATTGGATAGCTCTTAAACTGGAAAAGCACAACCCGTAGGAAACTAATGGAAAATTGATGTTGCATATTTTTTTAGATGCTTTTCGAGAGCCGAATTGTTGTACATCTCTTTGATAAATGCATAGTGCATATCTGTATGGAGGATGTTATTCACTAGTTAAAGAGACTGTAACTGAGGTTTTGAGTTGATGAACGTGTTACTAGTAATACATGCCGGGGCAAACCATAATTTCCTTGGGAGGTTGATTTTGTGTAATTCCTAGATGCTTCTCCAATATCCAATATTATGCATACTACATCTATATGAATGATGTTATTAGTTCTACATGTTGGGGAAAAGAAATCATAAAAAATCGTATTACTGAATAATTTGTGTGTTCAGTGCAAGTGTAAACCAGAAAAATGGTAATTGTTGTGCTTCTTCTTGTTATGGTTGTCGATGTAGATCACCACTGTATCTTAAACTTCAGGTATCTTTGAAACCCTCTAGCATTAACTGACAGAATGGGTTACGTGTTCAACAGTTTTGAAGTTTTTGTTTGCTAGCAGGTGTCAGCTACATATGTACTATTAATCTGTTACTATGGTCCATTCTCCATGTATTCCAGTCTAAAAGGCTAAAAAATGGTAGCATATGCTGGAAACTTGACATTGTATTGTTGTAGTTTGCTGTCAAATAACTCCTTTGATTATTCTGCTTGTATGTTTGCTGTTGGTCACATGCCCTTATAGCCATTGCCAATATTCTTGCAGGTTGAGAATGGAAAGGCTCAGGCTGCTAATTTTCCTTTTTGCACAATAGAGCCAAATGTAGGGATAGTCGCTGTCCCTGATACACGTCTCCATGTTCTTTCTGATATAAGCAAATCCAAACGAGCGGTCCCGGCTTCGATAGAGTTTGTTGATATTGCTGGACTTGTAAAGGGAGCCAGTCAAGGGGAGGTTTATTCTCAATAACCTAAAGTTTCCTAATATCAATTATTAGTCATGTTTTCACTTATTGTATCATTGCATCAGTGGCATTATAAATTGAAGATACAACAATTTGTTAAATATTTTCTATGGCAGGGCCTGGGGAATAAGTTCTTGTCACATATACGTGAAGTGGACTCCATACTTCAGGTTTATATACTTTCTAGTTCCTTTATCATTGTTATCTGTAATCTTGTGTTACGTTGAAGTCCATGTTAGTTCCCAGCCCACTTCCATGGAAGTAATGATGAATCTATAGTCATTTGATCCTGATATAAAAACGAGAGAAAAATATTACATAAAATATAGATCTTGATGTATCCCTTTTTGGTAAGTTGTGAAGAAAAAGTACTCATTTCTAACTATTTTTTAAAAATAAGTTTTTTAATTTTTTAATATAAGTTTTTACATTAATTTTTTAAATAATAATTATAGTTTTTTTATGGTTTCCTTTCCTATTTAGATAGATATTTTTACATTCCATTTTGTTGGAGTATTCCCTAAAATCACTGAAAGTGTGATAAGTATAAAGAGACATTACAGTTTTTTTTATAAAATTATTCAATTTTCAGTTTTCATTTTTTAACCTTAAAAATTGAAATTTGAAGCATTTAAAGATCTTTCATTTTTTTTCATGTAATAGCCATTACTGTTTTTATAAAAAAAGATAGTTCAATTTCATTTTCCCCCTTAAAATTGAAATTAGAGGCATTTAAAAATCATCCATTTTTTGCCGTTACAATTTTTTTTAACAAAAAAACTCTTATTTTCTATTTAAAATAGCTATATTAAAATTCCTGTTTTTTTTAATTTTATTTTTAGAGCATATTTTGAAATGTTTTTTGAAAAATTAAAATTCTTGAATAATTGTGGTGCTGACATGTGACACTTTTTACTTCTCCTAATATATATTAGATAGATTTTTTTTTTAAAAAATAGGCAAACCCACATATTATACCCAGTAAAAAAATTACATTAAGAACTGTAATATGAGCTCCTCCGGTTCTTCAAGAAAATATGTGGGTTCCTCCGATTATTTAAAAGAATTAGAAAAATATTAATAACAAGTTAGAAAATATGACATGGCATCCCACTAAGAGAGAAATAATGTATTTTTTTGTGTCAAAGTTGGGTGATATTGTAGTCCTAAAACAAACACAAGTGATATTCCTAGATAATTTCTCTAACATGGGTGACTATCTAGGGAAATTACTCGATTTAATACTTCAATTGCATTTCAAATATGAAAATAATCATTCCAAGGCCTTTTTTTTCTCTTTTGAGTTGTAAGGCTTTATTTTGCTGTTATATTGCATCCTAGCTTATGAGCATGTAAAGACTAAAGAGAAGGAAGAGTGCCCCATCAGTTTGCTTTGAGTTCCTTACTGATTTAAAAAATTTTCTGTCATACATTTTCTGTTGTTGCTTGCTGAAAGTGCTTTTGTGTACTATTTTAGGTAGTACGTTGTTTTGAGGACAATGACATTGTTCATGTGAATGGGAAGGTTGAGCCAAAAGCTGATATTGATGTAATCAACTTGGAATTAATTTTCTCAGATTTGGATCAGGTACTTGTTACAGTTCTGCTTTACATTTACAGGATGCTAACATAAACTAGGGGTATAGCTCATGGAGATGTATGCAGATAAATGGAGAAAAAAGAGGACATAAGATGCTTTTTATTAAAATGGACTAAATACAGATTCGAATGCATGTGATGATGCTAGTATTGCACGAGAGGTGTATATGAATAATAGCTTTTTACGTACCTATGAAGCATGCATGACAGTCTCATGATGGTGTCAGAAAAATGCACACAAGACAAGGGATGTGGATGATATATTTTTTCTTTTTTTTTCAACAGTAATTTTGTAGTCTTTCTTCTCCTTGTAAAGTTTCTAGGTATGCGAACCAACTAATGACACTAAGTTTACAAGAATGCAGATTGAGAAAAGAATGGAGAAACTCAAAAAAGGTAGAGCTAAAGATTCACAAGCTAAAGTAAAGGTAACCTTATCTATTAGTTTCTGGGAGATTAAGTGAGTAGTTCATCCTTGCAAGGTTTTAAAATGTTGATTGTTGTATGATTGACATCCTCGTAGTTACATTACAAACGTTGTCGTTGGGGATGTCTATTTTAATATTATCGTTTCAGGAGGAAGCAGAAAAGTCTGCCTTGGAGAAAATACAACAAGCACTACTGGATGGAAAACCAGCACGATCAGTATCTTTGTCGGAGTTTGAAAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCTGAGTTAAATTCTGGTGTGGTAACTATTTCAGCGCAGGTCAGTTGACATCTTTCACTTTTCCCTTTTGTATTTGAATCAATCAAAATTCATGCTTATTTCATTTCAGGGGGAGATCTTTATCCTAATGCTCTATTGGAAATTACTTTAATTGTCATATCTAGTTGTGGTCCTCGATACAAGTCTAGAAACTCTCTTTGTTAAAGAAGGTGATACGAGTCTAGAAGCTCTTATGATAAAATAAATACCAGAAGGAAATTCGGGATGTGTGACATTGCCTTTCTATGAGAGAAGGGGTGAAAAGCATGAGCTGACCTTCATGGAAACCGGGACCTGTCAAGATCTCGTAACCATTTTAGGTAGAGGAGCTATTATTTACCAACTTGTTTTCTTTGCCATATGTATTTTTAACTTTTTCCACCTTTAGGGATTAGGAGTTATGATGTGCTAAAGTGAATCTAGCTTTCTACACGATAAAAAATCTCTGTGGAACAGAGGGTTGCTTCCAGTTGCTACATATTTCTGGTCTTCCTATTGCAGGTTGAGTCTGAGCTATCTGAACTTCCTTTAGAAGAAAGAATAGAATATTTGAAATCGCTTGGTGTCAATGAAAGTGGCCTTGGAAATCTCATCAGAGAAACTTATGGTCTCCTAGGGTTGCGTACATACTTCACTTCTGGCGAGAAGGTGAAACAAATAAAAGAGCTTTAGTGATATTTGACTGTCGGCGTAGTTTTCGCCTTTGGGTACTGTAGTGTATGAGTATTGAGTTTATCATTGGTTAACTTGCAGGAAACCAAAGCATGGACCATCCTCACAGGTTTGCACTATGGTTTCTCTATTTCAATCTTTTCTTAAAGTGAAAAATAAGCAGTTCTGGTCCCTCTTATAGTATTTTCCAATATTGGTACTTTTTTATCTGGCTAAGCACATAAAACCTCCACTTTTCCTGTTTTTGCTCTTTTAATTCTATTGTTAATGGCACTTCTACAAGTTAATGGAATCTATTTTGTTTCCTTGTCTTCAGTAGCTTTACTTAAATGGCAACTTAGCTTTTCCTATTAAATACCTGTGTCTTTTCCTCTGATTAAAATATTTACTTTTAATCATTTAAAAGGTGGGAAAAGGGAAAGCGCAAAAAAGTCATATTCTTCATGCTCATGCTTGTTGTTTTCTATCCCTCCTCTCACATTGTCTCTACAAGGCTCATTCATTCAACCAGCAGCCTTCTCACTTATTCTCCTTCTCCAGGCTGCTGCCTTTTCTCTCGTTTGACAGCTCCTGCAAACAACCATATGCAGCACTTTTTTCCTCTTCCAAGCTCCTCCACATGAAAGTTCTTCTTCTCCCTACTTCATTTTCTTTTTCTGATGCTGGACTCTTCCTTGTTGTGGGTCAATTTTCTCGAGAAAAACATTCTGGATGGTTGTTTAGGTCAATTTTAAGAATAACAATAAGTTTTATGTGCTTAAAAAATAGAGAGACTAAATTTGGAATTTGCAAAAGAGGGACTAAAACTGTTCTCTAAAAATTTCCTTTACAGGGAACTATAACTGAGTCTCTTGAGCTTCTAGAAAAGAATGATAATTCTTTTGTATTTTGCTAAGACTGGGTACAGATTTCACTATTTGATAGGCTCTTGACTGACCATGTGGTATCTATCCCTTCACATCCTTTATCCTGAAAATGTTTGTCTAACCATTATGATTATATAGGAATGACTGCTCCTCAAGCAGCTGGGGTTATTCACTCCGACTTTGAAAAGGGCTTCATCAGGGCAGAGACGGTGAGTATCATGTAAAAATAGGGCAAGAAACAGTAAACTATGCTTTGGTTACTCCCAAGAATTTCAGCATGTACATTGTTTTTGTTTTAGAGGACTACCATATACTCAATATTTCTGATAAAATTTAGTAGGCATGCATATATATCCTAAACATCGTGAAGGTAATGATTGAGAGCTTAGAGCTTCATATTGGTTAGATCATAGATGATGAAGATATGCTGACAGTGGTGAAACTTTGTACTTATGAATACAAATTGATGTGATTGATTTATTAGTGGTTTGTCACCTTAGATGGATAGAGCATGTCAAAGCAAGTTTTCACATAAATGGTGGAGTTTGATCAAACTATTTTGTTATGTGATATGTGATTATCAGTGACTATGAAGAATTGAGTCTATTTTTCGGCTGGAAATGTAAAATTTACTTACATGGTTATAACTTGTAATCATGAGTCTGCATTTACCCGTTTTACCAGACATAGATATTCTGTTTAAATGTTATTTTGGTGCTGCTAGGTTTGTTTGTGCATAAAATAATAACTAAGAGATGTTCAAATAGTAGCTTTTGATAGGGTGGATGTTAGCTCAACTAACAACAAATATGAGCGAATCCAAACTAACTAGGCTGCTCACATGAATCCTCAGCATCCAGTTAGCTTCATTCAGACAAGTAGTAGTGGATATTTTAATCCTTAATAGGATGGATCTTAGATCAGTTGATTTAGGATTGGTTTGTTTGGTTGTAAATTTGAAGGTTAGATCCATTATGTTGCCCCTTTTATGCTTAATAGTGTGGTTGTATTTTGTCTTTCATTTCAAGTAGCCCAGAAACTCACCACACTGATTATGTGGAACTAATAGAACTGTCTTATGGGTGCTTGGAGTTATTTTGCTCATGGAAGAAAGCTTAACTTGCCACAAACTGGATGTTGGAAACATTTCAGCTTAGTTGACCATCCCCATCCAGCCTCATATGCACATCCAAGACTGGATGATCTTGTTGTGAAGTGTGAACAGACTCAACCATGGCTAACATGGAACTATAGTAGTTATCCTTCGTTATTTTTAGGAGAAATGAGCCTTAGAAATAAACATATTCAATGATTTGTCATCTAGGTGTGTTCTTATTGTCTTGTATGTTATTAGCAGAGTGTTTTTTCACTATAAGTTTTTGAATGGTCTTTCCCTTTACCCTTTAATAAAAAAACTTTTTTTAATGTTTTTAAATGGTTTGTCGACTTCACTTCTTTGCAGGTTGCTTACGATGACTTTGTTTCTGCTGGTTCTTTTGCAGCTGCAAGGGAGAAAGGACTGGTAAGTTGGCACTTTCTGATCATTTATGGTTCTTGATACTGTTACTTCTGTATTTTTGACCTCAGATGTTGGGAACTGTGTAAAATGTCTTTGTAGTATTTGATTGAGACTGTAAAGCAGTATATAACCCATTGATAGTCTACCTGACCAAGTGTATGATTGAAATTTGAAAACTAGCTTTCTTTTCAATTTCAGATATATCTGAACCTAAATAGGGTATTCCCCCATGGGCCAAAGGTACCCTCAGATATTCCTTGGCTACCTGAAATGTCTCGAGGAATCAGTTAAAACTTAAGACTCGTGATTGCAGTGTAATTTCAAAAATAGATAAATATTTAAAGTAACGGTAAATAAGCTAAATATTTCAATTTTAGCTGTTAAAAAAGTTTATTTTAAAAAAAAAACCCTTAAAATAACCTTAGAGTCTATCTTTGGCTTGTAAGCACATGCAGTGGTTACATTAAAATACCTTCCCGAAGCAAAAAGCTTAGCCAAACACAAATAAAGAATCCATGGTTGTTTTTGGTGTCATTTCCTGATTATTGTCAATTGGAACCTTTTTAAATTTTTTAGTGAACCATTATCATCTCAATAACCTTCTTACTTTGGCTCCAGCACTTCAAAATTAAATGTTCATTGCCTCCCCTATCCCCAAATTGTAATGAGGTTGCTAATCTCATGTAACTTTTACTAGTAAGTAGTTTTCTTTCACAAAGATAATTACTTGTGTAGTAGAATGTAAACGGTGCTTCTATGTGAGCACTAAGTCTACTGACCCGTGCAAACAAGAGAATAGATCAAGCTGGTTACAGGATTTATCTGTGTATGCAGTTGAGGTTAGAAGGAAAAGATTATGTTGTGCAAGAAGGGGATATAATGCTGTTCCGGTTCAATGTCTAATTGAAAAACAGTTGGTGAAGGAGATTTCACGAATTTTTATGTTGTGTTCACGGTTGTTTGAACCATTCAGATTTCTGAGACAGCAGATTTTGCTACAAGAGGTTTAATGGTGAAGCATATAATTTATGAGCTAGCCAGGTTTGTGAATTTTAAGGCACTGCAACTGGTGCTGATGAGATAGATTTATGGTTTTCACTCAGCTGCTACAAATCTCAATTTTTGGCTCGTCATGTAACATTCAATGTCCATAGGTCATTCGACTTTGTGTAATATTATTGTAATTCTTTCACTCCTTATCACCCTCCCCAATACGCCTTAGTTGGCTTCTGCAATATGATTTTTGCAATAAACGGAAAGAAGAAGATTCAAAA</genome_strand>
        <mrna_strand>TTTGTTTCATTTTCCCAAATTTTTGGGCTCAAATACAATTTTGGTGCAATTATTTGGGTAATTTTCTAATTTACATGTAGCGTCGTCGCTGAGTTAAACCCGAGAAATATTTGTAGTTGTAGCACGGCGATAGATAGCCGCAACGCTGTGTGTACCACTCAATAAGCACTTCAACTTGCTAGTGGTAAAATGGCGAGAATGGCTTGCTCTCAGCTTCTTCCTTCCATGGCAATTCCGCTCAAGTCTTCTTTCCTCAATGGTTCTTCTCACCAGTGGTTACGACTCTCAGAATCTACGCATCCTGTGGTACTCATCAAAAGGCGCTTCTCCGTCGCTAAGATAAGCATGAGTTTGCGAGCTGGCATCGTTGGCCTTCCTAATGTCGGCAAGTCCACGCTGTTCAACGCCGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGAATGGAAAGGCTCAGGCTGCTAATTTTCCTTTTTGCACAATAGAGCCAAATGTAGGGATAGTCGCTGTCCCTGATACACGTCTCCATGTTCTTTCTGATATAAGCAAATCCAAACGAGCGGTCCCGGCTTCGATAGAGTTTGTTGATATTGCTGGACTTGTAAAGGGAGCCAGTCAAGGGGAG..............................................................................................................................GGCCTGGGGAATAAGTTCTTGTCACATATACGTGAAGTGGACTCCATACTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTACGTTGTTTTGAGGACAATGACATTGTTCATGTGAATGGGAAGGTTGAGCCAAAAGCTGATATTGATGTAATCAACTTGGAATTAATTTTCTCAGATTTGGATCAG........................................................................................................................................................................................................................................................................................................................................................................................ATTGAGAAAAGAATGGAGAAACTCAAAAAAGGTAGAGCTAAAGATTCACAAGCTAAAGTAAAG....................................................................................................................................................GAGGAAGCAGAAAAGTCTGCCTTGGAGAAAATACAACAAGCACTACTGGATGGAAAACCAGCACGATCAGTATCTTTGTCGGAGTTTGAAAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCTGAGTTAAATTCTGGTGTGGTAACTATTTCAGCGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTCTGAGCTATCTGAACTTCCTTTAGAAGAAAGAATAGAATATTTGAAATCGCTTGGTGTCAATGAAAGTGGCCTTGGAAATCTCATCAGAGAAACTTATGGTCTCCTAGGGTTGCGTACATACTTCACTTCTGGCGAGAAG.........................................................................................................GAAACCAAAGCATGGACCATCCTCACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGACTGCTCCTCAAGCAGCTGGGGTTATTCACTCCGACTTTGAAAAGGGCTTCATCAGGGCAGAGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTACGATGACTTTGTTTCTGCTGGTTCTTTTGCAGCTGCAAGGGAGAAAGGACTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGGTTAGAAGGAAAAGATTATGTTGTGCAAGAAGGGGATATAATGCTGTTCCGGTTCAATGTCTAATTGAAAAACAGTTGGTGAAGGAGATTTCACGAATTTTTATGTTGTGTTCACGGTTGTTTGAACCATTCAGATTTCTGAGACAGCAGATTTTGCTACAAGAGGTTTAATGGTGAAGCATATAATTTATGAGCTAGCCAGGTTTGTGAATTTTAAGGCACTGCAACTGGTGCTGATGAGATAGATTTATGGTTTTCACTCAGCTGCTACAAATCTCAATTTTTGGCTCGTCATGTAACATTCAATGTCCATAGGTCATTCGACTTTGTGTAATATTATTGTAATTCTTTCACTCCTTATCACCCTCCCCAATACGCCTTAGTTGGCTTCTGCAATATGATTTTTGCAATAAACGGAAAGAAGAAGATTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E214117" ref_strand="+" ref_description="SGN-E214117 [cLEC-80-O24]">
      <seq>aaaggatgctataacacaactttgtcttctaacaatgaagcctgtcatatttgtggcaaatgtagcggaatcagaggtagctgaacctgaaaataatcctcatgtgaaggaagtaattaaaaaagctgctgagttaaattctggtgtggtaactatttcagcgcaggttgagtctgagctatctgaacttcctttagaagaaagaatagaatatttgaaatcgcttggtgtcaatgaaagtggccttggaaatctcatcagagaaacttatggtctcctagggttgcgtacatacttcacttctggcgagaaggaaaccaaagcatggaccatcctcacaggaatgactgctcctcaagcagctggggttattcactccgactttgaaaagggcttcatcagggcagagacggttgcttacgatgactttgtttctgctggttcttttgcagctgcaagggagaaaggactgttgaggttagaaggaaaagattatgttgtgcaagaaggggatataatgctgttccggttcaatgtctaattgaaaaacagttggtgaaggagatttcacgaatttttatgttgtgttcacggttgtttgaaccattcagatttctgagacagcagattttgctacaagaggtttaatggtgaagcatataatttatgagctagccaggtttgtgaattttaaggcactgcaactggtgctgatgagatagatttatggttttcactcagctgctacaaatctcaatttttggctcgtcatgtaacattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="33828" stop="28862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33528" g_stop="33363" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33362" i_stop="32862" i_length="501">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32861" g_stop="32715" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="313" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32714" i_stop="32610" i_length="105">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32609" g_stop="32582" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="341" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32581" i_stop="31687" i_length="895">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31686" g_stop="31616" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="412" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31615" i_stop="30363" i_length="1253">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30362" g_stop="30303" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="472" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30302" i_stop="29472" i_length="831">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29471" g_stop="29162" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="782" r_length="310" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E214117" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33528" e_stop="33363"/>
          <exon e_start="32861" e_stop="32715"/>
          <exon e_start="32609" e_stop="32582"/>
          <exon e_start="31686" e_stop="31616"/>
          <exon e_start="30362" e_stop="30303"/>
          <exon e_start="29471" e_stop="29162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCTGAGTTAAATTCTGGTGTGGTAACTATTTCAGCGCAGGTCAGTTGACATCTTTCACTTTTCCCTTTTGTATTTGAATCAATCAAAATTCATGCTTATTTCATTTCAGGGGGAGATCTTTATCCTAATGCTCTATTGGAAATTACTTTAATTGTCATATCTAGTTGTGGTCCTCGATACAAGTCTAGAAACTCTCTTTGTTAAAGAAGGTGATACGAGTCTAGAAGCTCTTATGATAAAATAAATACCAGAAGGAAATTCGGGATGTGTGACATTGCCTTTCTATGAGAGAAGGGGTGAAAAGCATGAGCTGACCTTCATGGAAACCGGGACCTGTCAAGATCTCGTAACCATTTTAGGTAGAGGAGCTATTATTTACCAACTTGTTTTCTTTGCCATATGTATTTTTAACTTTTTCCACCTTTAGGGATTAGGAGTTATGATGTGCTAAAGTGAATCTAGCTTTCTACACGATAAAAAATCTCTGTGGAACAGAGGGTTGCTTCCAGTTGCTACATATTTCTGGTCTTCCTATTGCAGGTTGAGTCTGAGCTATCTGAACTTCCTTTAGAAGAAAGAATAGAATATTTGAAATCGCTTGGTGTCAATGAAAGTGGCCTTGGAAATCTCATCAGAGAAACTTATGGTCTCCTAGGGTTGCGTACATACTTCACTTCTGGCGAGAAGGTGAAACAAATAAAAGAGCTTTAGTGATATTTGACTGTCGGCGTAGTTTTCGCCTTTGGGTACTGTAGTGTATGAGTATTGAGTTTATCATTGGTTAACTTGCAGGAAACCAAAGCATGGACCATCCTCACAGGTTTGCACTATGGTTTCTCTATTTCAATCTTTTCTTAAAGTGAAAAATAAGCAGTTCTGGTCCCTCTTATAGTATTTTCCAATATTGGTACTTTTTTATCTGGCTAAGCACATAAAACCTCCACTTTTCCTGTTTTTGCTCTTTTAATTCTATTGTTAATGGCACTTCTACAAGTTAATGGAATCTATTTTGTTTCCTTGTCTTCAGTAGCTTTACTTAAATGGCAACTTAGCTTTTCCTATTAAATACCTGTGTCTTTTCCTCTGATTAAAATATTTACTTTTAATCATTTAAAAGGTGGGAAAAGGGAAAGCGCAAAAAAGTCATATTCTTCATGCTCATGCTTGTTGTTTTCTATCCCTCCTCTCACATTGTCTCTACAAGGCTCATTCATTCAACCAGCAGCCTTCTCACTTATTCTCCTTCTCCAGGCTGCTGCCTTTTCTCTCGTTTGACAGCTCCTGCAAACAACCATATGCAGCACTTTTTTCCTCTTCCAAGCTCCTCCACATGAAAGTTCTTCTTCTCCCTACTTCATTTTCTTTTTCTGATGCTGGACTCTTCCTTGTTGTGGGTCAATTTTCTCGAGAAAAACATTCTGGATGGTTGTTTAGGTCAATTTTAAGAATAACAATAAGTTTTATGTGCTTAAAAAATAGAGAGACTAAATTTGGAATTTGCAAAAGAGGGACTAAAACTGTTCTCTAAAAATTTCCTTTACAGGGAACTATAACTGAGTCTCTTGAGCTTCTAGAAAAGAATGATAATTCTTTTGTATTTTGCTAAGACTGGGTACAGATTTCACTATTTGATAGGCTCTTGACTGACCATGTGGTATCTATCCCTTCACATCCTTTATCCTGAAAATGTTTGTCTAACCATTATGATTATATAGGAATGACTGCTCCTCAAGCAGCTGGGGTTATTCACTCCGACTTTGAAAAGGGCTTCATCAGGGCAGAGACGGTGAGTATCATGTAAAAATAGGGCAAGAAACAGTAAACTATGCTTTGGTTACTCCCAAGAATTTCAGCATGTACATTGTTTTTGTTTTAGAGGACTACCATATACTCAATATTTCTGATAAAATTTAGTAGGCATGCATATATATCCTAAACATCGTGAAGGTAATGATTGAGAGCTTAGAGCTTCATATTGGTTAGATCATAGATGATGAAGATATGCTGACAGTGGTGAAACTTTGTACTTATGAATACAAATTGATGTGATTGATTTATTAGTGGTTTGTCACCTTAGATGGATAGAGCATGTCAAAGCAAGTTTTCACATAAATGGTGGAGTTTGATCAAACTATTTTGTTATGTGATATGTGATTATCAGTGACTATGAAGAATTGAGTCTATTTTTCGGCTGGAAATGTAAAATTTACTTACATGGTTATAACTTGTAATCATGAGTCTGCATTTACCCGTTTTACCAGACATAGATATTCTGTTTAAATGTTATTTTGGTGCTGCTAGGTTTGTTTGTGCATAAAATAATAACTAAGAGATGTTCAAATAGTAGCTTTTGATAGGGTGGATGTTAGCTCAACTAACAACAAATATGAGCGAATCCAAACTAACTAGGCTGCTCACATGAATCCTCAGCATCCAGTTAGCTTCATTCAGACAAGTAGTAGTGGATATTTTAATCCTTAATAGGATGGATCTTAGATCAGTTGATTTAGGATTGGTTTGTTTGGTTGTAAATTTGAAGGTTAGATCCATTATGTTGCCCCTTTTATGCTTAATAGTGTGGTTGTATTTTGTCTTTCATTTCAAGTAGCCCAGAAACTCACCACACTGATTATGTGGAACTAATAGAACTGTCTTATGGGTGCTTGGAGTTATTTTGCTCATGGAAGAAAGCTTAACTTGCCACAAACTGGATGTTGGAAACATTTCAGCTTAGTTGACCATCCCCATCCAGCCTCATATGCACATCCAAGACTGGATGATCTTGTTGTGAAGTGTGAACAGACTCAACCATGGCTAACATGGAACTATAGTAGTTATCCTTCGTTATTTTTAGGAGAAATGAGCCTTAGAAATAAACATATTCAATGATTTGTCATCTAGGTGTGTTCTTATTGTCTTGTATGTTATTAGCAGAGTGTTTTTTCACTATAAGTTTTTGAATGGTCTTTCCCTTTACCCTTTAATAAAAAAACTTTTTTTAATGTTTTTAAATGGTTTGTCGACTTCACTTCTTTGCAGGTTGCTTACGATGACTTTGTTTCTGCTGGTTCTTTTGCAGCTGCAAGGGAGAAAGGACTGGTAAGTTGGCACTTTCTGATCATTTATGGTTCTTGATACTGTTACTTCTGTATTTTTGACCTCAGATGTTGGGAACTGTGTAAAATGTCTTTGTAGTATTTGATTGAGACTGTAAAGCAGTATATAACCCATTGATAGTCTACCTGACCAAGTGTATGATTGAAATTTGAAAACTAGCTTTCTTTTCAATTTCAGATATATCTGAACCTAAATAGGGTATTCCCCCATGGGCCAAAGGTACCCTCAGATATTCCTTGGCTACCTGAAATGTCTCGAGGAATCAGTTAAAACTTAAGACTCGTGATTGCAGTGTAATTTCAAAAATAGATAAATATTTAAAGTAACGGTAAATAAGCTAAATATTTCAATTTTAGCTGTTAAAAAAGTTTATTTTAAAAAAAAAACCCTTAAAATAACCTTAGAGTCTATCTTTGGCTTGTAAGCACATGCAGTGGTTACATTAAAATACCTTCCCGAAGCAAAAAGCTTAGCCAAACACAAATAAAGAATCCATGGTTGTTTTTGGTGTCATTTCCTGATTATTGTCAATTGGAACCTTTTTAAATTTTTTAGTGAACCATTATCATCTCAATAACCTTCTTACTTTGGCTCCAGCACTTCAAAATTAAATGTTCATTGCCTCCCCTATCCCCAAATTGTAATGAGGTTGCTAATCTCATGTAACTTTTACTAGTAAGTAGTTTTCTTTCACAAAGATAATTACTTGTGTAGTAGAATGTAAACGGTGCTTCTATGTGAGCACTAAGTCTACTGACCCGTGCAAACAAGAGAATAGATCAAGCTGGTTACAGGATTTATCTGTGTATGCAGTTGAGGTTAGAAGGAAAAGATTATGTTGTGCAAGAAGGGGATATAATGCTGTTCCGGTTCAATGTCTAATTGAAAAACAGTTGGTGAAGGAGATTTCACGAATTTTTATGTTGTGTTCACGGTTGTTTGAACCATTCAGATTTCTGAGACAGCAGATTTTGCTACAAGAGGTTTAATGGTGAAGCATATAATTTATGAGCTAGCCAGGTTTGTGAATTTTAAGGCACTGCAACTGGTGCTGATGAGATAGATTTATGGTTTTCACTCAGCTGCTACAAATCTCAATTTTTGGCTCGTCATGTAACATTCA</genome_strand>
        <mrna_strand>AAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCTGAGTTAAATTCTGGTGTGGTAACTATTTCAGCGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTCTGAGCTATCTGAACTTCCTTTAGAAGAAAGAATAGAATATTTGAAATCGCTTGGTGTCAATGAAAGTGGCCTTGGAAATCTCATCAGAGAAACTTATGGTCTCCTAGGGTTGCGTACATACTTCACTTCTGGCGAGAAG.........................................................................................................GAAACCAAAGCATGGACCATCCTCACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGACTGCTCCTCAAGCAGCTGGGGTTATTCACTCCGACTTTGAAAAGGGCTTCATCAGGGCAGAGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTACGATGACTTTGTTTCTGCTGGTTCTTTTGCAGCTGCAAGGGAGAAAGGACTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGGTTAGAAGGAAAAGATTATGTTGTGCAAGAAGGGGATATAATGCTGTTCCGGTTCAATGTCTAATTGAAAAACAGTTGGTGAAGGAGATTTCACGAATTTTTATGTTGTGTTCACGGTTGTTTGAACCATTCAGATTTCTGAGACAGCAGATTTTGCTACAAGAGGTTTAATGGTGAAGCATATAATTTATGAGCTAGCCAGGTTTGTGAATTTTAAGGCACTGCAACTGGTGCTGATGAGATAGATTTATGGTTTTCACTCAGCTGCTACAAATCTCAATTTTTGGCTCGTCATGTAACATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E254028" ref_strand="+" ref_description="SGN-E254028 [cLEG-34-E8]">
      <seq>ataacacaactttgtcttctaacaatgaagcctgtcatatttgtggcaaatgtagcggaatcagaggtagctgaacctgaaaataatcctcatgtgaaggaagtaattaaaaaagctgctgagttaaattctggtgtggtaactatttcagcgcaggttgagtctgagctatctgaacttcctttagaagaaagaatagaatatttgaaatcgcttggtgtcaatgaaagtggccttggaaatctcatcagagaaacttatggtctcctagggttgcgtacatacttcacttctggcgagaaggaaaccaaagcatggaccatcctcacaggaatgactgctcctcaagcagctggggttattcactccgactttgaaaagggcttcatcagggcagagacggttgcttacgatgactttgtttctgctggttcttttgcagctgcaagggagaaaggactgttgaggttagaaggaaaagattatgttgtgcaagaaggggatataatgctgttccggttcaatgtctaattgaaaaacagttggtgaaggagatttcacgaatttttatgttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="33818" stop="29057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33518" g_stop="33363" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33362" i_stop="32862" i_length="501">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32861" g_stop="32715" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="303" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32714" i_stop="32610" i_length="105">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32609" g_stop="32582" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="331" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32581" i_stop="31687" i_length="895">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31686" g_stop="31616" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="402" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31615" i_stop="30363" i_length="1253">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30362" g_stop="30303" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="462" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30302" i_stop="29472" i_length="831">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29471" g_stop="29357" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="577" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E254028" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33518" e_stop="33363"/>
          <exon e_start="32861" e_stop="32715"/>
          <exon e_start="32609" e_stop="32582"/>
          <exon e_start="31686" e_stop="31616"/>
          <exon e_start="30362" e_stop="30303"/>
          <exon e_start="29471" e_stop="29357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCTGAGTTAAATTCTGGTGTGGTAACTATTTCAGCGCAGGTCAGTTGACATCTTTCACTTTTCCCTTTTGTATTTGAATCAATCAAAATTCATGCTTATTTCATTTCAGGGGGAGATCTTTATCCTAATGCTCTATTGGAAATTACTTTAATTGTCATATCTAGTTGTGGTCCTCGATACAAGTCTAGAAACTCTCTTTGTTAAAGAAGGTGATACGAGTCTAGAAGCTCTTATGATAAAATAAATACCAGAAGGAAATTCGGGATGTGTGACATTGCCTTTCTATGAGAGAAGGGGTGAAAAGCATGAGCTGACCTTCATGGAAACCGGGACCTGTCAAGATCTCGTAACCATTTTAGGTAGAGGAGCTATTATTTACCAACTTGTTTTCTTTGCCATATGTATTTTTAACTTTTTCCACCTTTAGGGATTAGGAGTTATGATGTGCTAAAGTGAATCTAGCTTTCTACACGATAAAAAATCTCTGTGGAACAGAGGGTTGCTTCCAGTTGCTACATATTTCTGGTCTTCCTATTGCAGGTTGAGTCTGAGCTATCTGAACTTCCTTTAGAAGAAAGAATAGAATATTTGAAATCGCTTGGTGTCAATGAAAGTGGCCTTGGAAATCTCATCAGAGAAACTTATGGTCTCCTAGGGTTGCGTACATACTTCACTTCTGGCGAGAAGGTGAAACAAATAAAAGAGCTTTAGTGATATTTGACTGTCGGCGTAGTTTTCGCCTTTGGGTACTGTAGTGTATGAGTATTGAGTTTATCATTGGTTAACTTGCAGGAAACCAAAGCATGGACCATCCTCACAGGTTTGCACTATGGTTTCTCTATTTCAATCTTTTCTTAAAGTGAAAAATAAGCAGTTCTGGTCCCTCTTATAGTATTTTCCAATATTGGTACTTTTTTATCTGGCTAAGCACATAAAACCTCCACTTTTCCTGTTTTTGCTCTTTTAATTCTATTGTTAATGGCACTTCTACAAGTTAATGGAATCTATTTTGTTTCCTTGTCTTCAGTAGCTTTACTTAAATGGCAACTTAGCTTTTCCTATTAAATACCTGTGTCTTTTCCTCTGATTAAAATATTTACTTTTAATCATTTAAAAGGTGGGAAAAGGGAAAGCGCAAAAAAGTCATATTCTTCATGCTCATGCTTGTTGTTTTCTATCCCTCCTCTCACATTGTCTCTACAAGGCTCATTCATTCAACCAGCAGCCTTCTCACTTATTCTCCTTCTCCAGGCTGCTGCCTTTTCTCTCGTTTGACAGCTCCTGCAAACAACCATATGCAGCACTTTTTTCCTCTTCCAAGCTCCTCCACATGAAAGTTCTTCTTCTCCCTACTTCATTTTCTTTTTCTGATGCTGGACTCTTCCTTGTTGTGGGTCAATTTTCTCGAGAAAAACATTCTGGATGGTTGTTTAGGTCAATTTTAAGAATAACAATAAGTTTTATGTGCTTAAAAAATAGAGAGACTAAATTTGGAATTTGCAAAAGAGGGACTAAAACTGTTCTCTAAAAATTTCCTTTACAGGGAACTATAACTGAGTCTCTTGAGCTTCTAGAAAAGAATGATAATTCTTTTGTATTTTGCTAAGACTGGGTACAGATTTCACTATTTGATAGGCTCTTGACTGACCATGTGGTATCTATCCCTTCACATCCTTTATCCTGAAAATGTTTGTCTAACCATTATGATTATATAGGAATGACTGCTCCTCAAGCAGCTGGGGTTATTCACTCCGACTTTGAAAAGGGCTTCATCAGGGCAGAGACGGTGAGTATCATGTAAAAATAGGGCAAGAAACAGTAAACTATGCTTTGGTTACTCCCAAGAATTTCAGCATGTACATTGTTTTTGTTTTAGAGGACTACCATATACTCAATATTTCTGATAAAATTTAGTAGGCATGCATATATATCCTAAACATCGTGAAGGTAATGATTGAGAGCTTAGAGCTTCATATTGGTTAGATCATAGATGATGAAGATATGCTGACAGTGGTGAAACTTTGTACTTATGAATACAAATTGATGTGATTGATTTATTAGTGGTTTGTCACCTTAGATGGATAGAGCATGTCAAAGCAAGTTTTCACATAAATGGTGGAGTTTGATCAAACTATTTTGTTATGTGATATGTGATTATCAGTGACTATGAAGAATTGAGTCTATTTTTCGGCTGGAAATGTAAAATTTACTTACATGGTTATAACTTGTAATCATGAGTCTGCATTTACCCGTTTTACCAGACATAGATATTCTGTTTAAATGTTATTTTGGTGCTGCTAGGTTTGTTTGTGCATAAAATAATAACTAAGAGATGTTCAAATAGTAGCTTTTGATAGGGTGGATGTTAGCTCAACTAACAACAAATATGAGCGAATCCAAACTAACTAGGCTGCTCACATGAATCCTCAGCATCCAGTTAGCTTCATTCAGACAAGTAGTAGTGGATATTTTAATCCTTAATAGGATGGATCTTAGATCAGTTGATTTAGGATTGGTTTGTTTGGTTGTAAATTTGAAGGTTAGATCCATTATGTTGCCCCTTTTATGCTTAATAGTGTGGTTGTATTTTGTCTTTCATTTCAAGTAGCCCAGAAACTCACCACACTGATTATGTGGAACTAATAGAACTGTCTTATGGGTGCTTGGAGTTATTTTGCTCATGGAAGAAAGCTTAACTTGCCACAAACTGGATGTTGGAAACATTTCAGCTTAGTTGACCATCCCCATCCAGCCTCATATGCACATCCAAGACTGGATGATCTTGTTGTGAAGTGTGAACAGACTCAACCATGGCTAACATGGAACTATAGTAGTTATCCTTCGTTATTTTTAGGAGAAATGAGCCTTAGAAATAAACATATTCAATGATTTGTCATCTAGGTGTGTTCTTATTGTCTTGTATGTTATTAGCAGAGTGTTTTTTCACTATAAGTTTTTGAATGGTCTTTCCCTTTACCCTTTAATAAAAAAACTTTTTTTAATGTTTTTAAATGGTTTGTCGACTTCACTTCTTTGCAGGTTGCTTACGATGACTTTGTTTCTGCTGGTTCTTTTGCAGCTGCAAGGGAGAAAGGACTGGTAAGTTGGCACTTTCTGATCATTTATGGTTCTTGATACTGTTACTTCTGTATTTTTGACCTCAGATGTTGGGAACTGTGTAAAATGTCTTTGTAGTATTTGATTGAGACTGTAAAGCAGTATATAACCCATTGATAGTCTACCTGACCAAGTGTATGATTGAAATTTGAAAACTAGCTTTCTTTTCAATTTCAGATATATCTGAACCTAAATAGGGTATTCCCCCATGGGCCAAAGGTACCCTCAGATATTCCTTGGCTACCTGAAATGTCTCGAGGAATCAGTTAAAACTTAAGACTCGTGATTGCAGTGTAATTTCAAAAATAGATAAATATTTAAAGTAACGGTAAATAAGCTAAATATTTCAATTTTAGCTGTTAAAAAAGTTTATTTTAAAAAAAAAACCCTTAAAATAACCTTAGAGTCTATCTTTGGCTTGTAAGCACATGCAGTGGTTACATTAAAATACCTTCCCGAAGCAAAAAGCTTAGCCAAACACAAATAAAGAATCCATGGTTGTTTTTGGTGTCATTTCCTGATTATTGTCAATTGGAACCTTTTTAAATTTTTTAGTGAACCATTATCATCTCAATAACCTTCTTACTTTGGCTCCAGCACTTCAAAATTAAATGTTCATTGCCTCCCCTATCCCCAAATTGTAATGAGGTTGCTAATCTCATGTAACTTTTACTAGTAAGTAGTTTTCTTTCACAAAGATAATTACTTGTGTAGTAGAATGTAAACGGTGCTTCTATGTGAGCACTAAGTCTACTGACCCGTGCAAACAAGAGAATAGATCAAGCTGGTTACAGGATTTATCTGTGTATGCAGTTGAGGTTAGAAGGAAAAGATTATGTTGTGCAAGAAGGGGATATAATGCTGTTCCGGTTCAATGTCTAATTGAAAAACAGTTGGTGAAGGAGATTTCACGAATTTTTATGTTGTG</genome_strand>
        <mrna_strand>ATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCTGAGTTAAATTCTGGTGTGGTAACTATTTCAGCGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTCTGAGCTATCTGAACTTCCTTTAGAAGAAAGAATAGAATATTTGAAATCGCTTGGTGTCAATGAAAGTGGCCTTGGAAATCTCATCAGAGAAACTTATGGTCTCCTAGGGTTGCGTACATACTTCACTTCTGGCGAGAAG.........................................................................................................GAAACCAAAGCATGGACCATCCTCACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGACTGCTCCTCAAGCAGCTGGGGTTATTCACTCCGACTTTGAAAAGGGCTTCATCAGGGCAGAGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTACGATGACTTTGTTTCTGCTGGTTCTTTTGCAGCTGCAAGGGAGAAAGGACTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGGTTAGAAGGAAAAGATTATGTTGTGCAAGAAGGGGATATAATGCTGTTCCGGTTCAATGTCTAATTGAAAAACAGTTGGTGAAGGAGATTTCACGAATTTTTATGTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E377533" ref_strand="+" ref_description="SGN-E377533 [TUS-20-D1]">
      <seq>tacctgaaatgtctcgaggaatcagttaaaacttaagactcgtgattgcagtgtaatttcaaaaatagataaatatttaaagtaacggtaaataagctaaatatttcaattttagctgttaaaaaagtttattttaaaaaaaaaacccttaaaataaccttagagtctatctttggcttgtaagcacatgcagtggttacattaaaataccttcccgaagcaaaaagcttagccaaacacaaataaagaatccatggttgtttttggtgtcatttcctgattattgtcaattggaacctttttaaattttttagtgaaccattatcatctcaataaccttcttactttggctccagcacttcaaaattaaatgttcattgcctcccctatccccaaattgtaatgaggttgctaatctcatgtaacttttactagtaagtagttttctttcacaaagataattacttgtgtagtagaatgtaaacggtgcttctatgtgagcactaagtctactgacccgtgcaaacaagagaatagatcaagctggttacaggatttatctgtgtatgcagttgaggttagaaggaaaagattatgttgtgcaagaaggggatataatgctgttccggttcaatgtctaattgaaaaacagttggtgaaggagatttcacgaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="30343" stop="29067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30043" g_stop="29367" g_length="677"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="677" r_length="677" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E377533" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30043" e_stop="29367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTGAAATGTCTCGAGGAATCAGTTAAAACTTAAGACTCGTGATTGCAGTGTAATTTCAAAAATAGATAAATATTTAAAGTAACGGTAAATAAGCTAAATATTTCAATTTTAGCTGTTAAAAAAGTTTATTTTAAAAAAAAAACCCTTAAAATAACCTTAGAGTCTATCTTTGGCTTGTAAGCACATGCAGTGGTTACATTAAAATACCTTCCCGAAGCAAAAAGCTTAGCCAAACACAAATAAAGAATCCATGGTTGTTTTTGGTGTCATTTCCTGATTATTGTCAATTGGAACCTTTTTAAATTTTTTAGTGAACCATTATCATCTCAATAACCTTCTTACTTTGGCTCCAGCACTTCAAAATTAAATGTTCATTGCCTCCCCTATCCCCAAATTGTAATGAGGTTGCTAATCTCATGTAACTTTTACTAGTAAGTAGTTTTCTTTCACAAAGATAATTACTTGTGTAGTAGAATGTAAACGGTGCTTCTATGTGAGCACTAAGTCTACTGACCCGTGCAAACAAGAGAATAGATCAAGCTGGTTACAGGATTTATCTGTGTATGCAGTTGAGGTTAGAAGGAAAAGATTATGTTGTGCAAGAAGGGGATATAATGCTGTTCCGGTTCAATGTCTAATTGAAAAACAGTTGGTGAAGGAGATTTCACGAATTT</genome_strand>
        <mrna_strand>TACCTGAAATGTCTCGAGGAATCAGTTAAAACTTAAGACTCGTGATTGCAGTGTAATTTCAAAAATAGATAAATATTTAAAGTAACGGTAAATAAGCTAAATATTTCAATTTTAGCTGTTAAAAAAGTTTATTTTAAAAAAAAAACCCTTAAAATAACCTTAGAGTCTATCTTTGGCTTGTAAGCACATGCAGTGGTTACATTAAAATACCTTCCCGAAGCAAAAAGCTTAGCCAAACACAAATAAAGAATCCATGGTTGTTTTTGGTGTCATTTCCTGATTATTGTCAATTGGAACCTTTTTAAATTTTTTAGTGAACCATTATCATCTCAATAACCTTCTTACTTTGGCTCCAGCACTTCAAAATTAAATGTTCATTGCCTCCCCTATCCCCAAATTGTAATGAGGTTGCTAATCTCATGTAACTTTTACTAGTAAGTAGTTTTCTTTCACAAAGATAATTACTTGTGTAGTAGAATGTAAACGGTGCTTCTATGTGAGCACTAAGTCTACTGACCCGTGCAAACAAGAGAATAGATCAAGCTGGTTACAGGATTTATCTGTGTATGCAGTTGAGGTTAGAAGGAAAAGATTATGTTGTGCAAGAAGGGGATATAATGCTGTTCCGGTTCAATGTCTAATTGAAAAACAGTTGGTGAAGGAGATTTCACGAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E375024" ref_strand="+" ref_description="SGN-E375024 [TUS-36-K15]">
      <seq>tacctgaaatgtctcgaggaatcagttaaaacttaagactcgtgattgcagtgtaatttcaaaaatagataaatatttaaagtaacggtaaataagctaaatatttcaattttagctgttaaaaaagtttattttaaaaaaaaaacccttaaaataaccttagagtctatctttggcttgtaagcacatgcagtggttacattaaaataccttcccgaagcaaaaagcttagccaaacacaaataaagaatccatggttgtttttggtgtcatttcctgattattgtcaattggaacctttttaaattttttagtgaaccattatcatctcaataaccttcttactttggctccagcacttcaaaattaaatgttcattgcctcccctatccccaaattgtaatgaggttgctaatctcatgtaacttttactagtaagtagttttctttcacaaagataattacttgtgtagtagaatgtaaacggtgcttctatgtgagcactaagtctactgacccgtgcaaacaagagaatagatcaagctggttacaggatttatctgtgtatgcagttgaggttagaaggaaaagattatgttgtgcaagaaggggatataatgctgttccggttcaatgtctaattgaaaaacagttggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="30343" stop="29085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30043" g_stop="29385" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E375024" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30043" e_stop="29385"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTGAAATGTCTCGAGGAATCAGTTAAAACTTAAGACTCGTGATTGCAGTGTAATTTCAAAAATAGATAAATATTTAAAGTAACGGTAAATAAGCTAAATATTTCAATTTTAGCTGTTAAAAAAGTTTATTTTAAAAAAAAAACCCTTAAAATAACCTTAGAGTCTATCTTTGGCTTGTAAGCACATGCAGTGGTTACATTAAAATACCTTCCCGAAGCAAAAAGCTTAGCCAAACACAAATAAAGAATCCATGGTTGTTTTTGGTGTCATTTCCTGATTATTGTCAATTGGAACCTTTTTAAATTTTTTAGTGAACCATTATCATCTCAATAACCTTCTTACTTTGGCTCCAGCACTTCAAAATTAAATGTTCATTGCCTCCCCTATCCCCAAATTGTAATGAGGTTGCTAATCTCATGTAACTTTTACTAGTAAGTAGTTTTCTTTCACAAAGATAATTACTTGTGTAGTAGAATGTAAACGGTGCTTCTATGTGAGCACTAAGTCTACTGACCCGTGCAAACAAGAGAATAGATCAAGCTGGTTACAGGATTTATCTGTGTATGCAGTTGAGGTTAGAAGGAAAAGATTATGTTGTGCAAGAAGGGGATATAATGCTGTTCCGGTTCAATGTCTAATTGAAAAACAGTTGGTGA</genome_strand>
        <mrna_strand>TACCTGAAATGTCTCGAGGAATCAGTTAAAACTTAAGACTCGTGATTGCAGTGTAATTTCAAAAATAGATAAATATTTAAAGTAACGGTAAATAAGCTAAATATTTCAATTTTAGCTGTTAAAAAAGTTTATTTTAAAAAAAAAACCCTTAAAATAACCTTAGAGTCTATCTTTGGCTTGTAAGCACATGCAGTGGTTACATTAAAATACCTTCCCGAAGCAAAAAGCTTAGCCAAACACAAATAAAGAATCCATGGTTGTTTTTGGTGTCATTTCCTGATTATTGTCAATTGGAACCTTTTTAAATTTTTTAGTGAACCATTATCATCTCAATAACCTTCTTACTTTGGCTCCAGCACTTCAAAATTAAATGTTCATTGCCTCCCCTATCCCCAAATTGTAATGAGGTTGCTAATCTCATGTAACTTTTACTAGTAAGTAGTTTTCTTTCACAAAGATAATTACTTGTGTAGTAGAATGTAAACGGTGCTTCTATGTGAGCACTAAGTCTACTGACCCGTGCAAACAAGAGAATAGATCAAGCTGGTTACAGGATTTATCTGTGTATGCAGTTGAGGTTAGAAGGAAAAGATTATGTTGTGCAAGAAGGGGATATAATGCTGTTCCGGTTCAATGTCTAATTGAAAAACAGTTGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E377354" ref_strand="+" ref_description="SGN-E377354 [TUS-21-I2]">
      <seq>tacctgaaatgtctcgaggaatcagttaaaacttaagactcgtgattgcagtgtaatttcaaaaatagataaatatttaaagtaacggtaaataagctaaatatttcaattttagctgttaaaaaagtttattttaaaaaaaaaacccttaaaataaccttagagtctatctttggcttgtaagcacatgcagtggttacattaaaataccttcccgaagcaaaaagcttagccaaacacaaataaagaatccatggttgtttttggtgtcatttcctgattattgtcaattggaacctttttaaattttttagtgaaccattatcatctcaataaccttcttactttggctccagcacttcaaaattaaatgttcattgcctcccctatccccaaattgtaatgaggttgctaatctcatgtaacttttactagtaagtagttttctttcacaaagataattacttgtgtagtagaatgtaaacggtgcttctatgtgagcactaagtctactgacccgtgcaaacaagagaatagatcaagctggttacaggatttatctgtgtatgcagttgaggttagaaggaaaagattatgttgtgcaagaaggggatataatgctgttccggttcaatgtctaattgaaaaacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="30343" stop="29092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30043" g_stop="29392" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="652" r_length="652" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E377354" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30043" e_stop="29392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTGAAATGTCTCGAGGAATCAGTTAAAACTTAAGACTCGTGATTGCAGTGTAATTTCAAAAATAGATAAATATTTAAAGTAACGGTAAATAAGCTAAATATTTCAATTTTAGCTGTTAAAAAAGTTTATTTTAAAAAAAAAACCCTTAAAATAACCTTAGAGTCTATCTTTGGCTTGTAAGCACATGCAGTGGTTACATTAAAATACCTTCCCGAAGCAAAAAGCTTAGCCAAACACAAATAAAGAATCCATGGTTGTTTTTGGTGTCATTTCCTGATTATTGTCAATTGGAACCTTTTTAAATTTTTTAGTGAACCATTATCATCTCAATAACCTTCTTACTTTGGCTCCAGCACTTCAAAATTAAATGTTCATTGCCTCCCCTATCCCCAAATTGTAATGAGGTTGCTAATCTCATGTAACTTTTACTAGTAAGTAGTTTTCTTTCACAAAGATAATTACTTGTGTAGTAGAATGTAAACGGTGCTTCTATGTGAGCACTAAGTCTACTGACCCGTGCAAACAAGAGAATAGATCAAGCTGGTTACAGGATTTATCTGTGTATGCAGTTGAGGTTAGAAGGAAAAGATTATGTTGTGCAAGAAGGGGATATAATGCTGTTCCGGTTCAATGTCTAATTGAAAAACAG</genome_strand>
        <mrna_strand>TACCTGAAATGTCTCGAGGAATCAGTTAAAACTTAAGACTCGTGATTGCAGTGTAATTTCAAAAATAGATAAATATTTAAAGTAACGGTAAATAAGCTAAATATTTCAATTTTAGCTGTTAAAAAAGTTTATTTTAAAAAAAAAACCCTTAAAATAACCTTAGAGTCTATCTTTGGCTTGTAAGCACATGCAGTGGTTACATTAAAATACCTTCCCGAAGCAAAAAGCTTAGCCAAACACAAATAAAGAATCCATGGTTGTTTTTGGTGTCATTTCCTGATTATTGTCAATTGGAACCTTTTTAAATTTTTTAGTGAACCATTATCATCTCAATAACCTTCTTACTTTGGCTCCAGCACTTCAAAATTAAATGTTCATTGCCTCCCCTATCCCCAAATTGTAATGAGGTTGCTAATCTCATGTAACTTTTACTAGTAAGTAGTTTTCTTTCACAAAGATAATTACTTGTGTAGTAGAATGTAAACGGTGCTTCTATGTGAGCACTAAGTCTACTGACCCGTGCAAACAAGAGAATAGATCAAGCTGGTTACAGGATTTATCTGTGTATGCAGTTGAGGTTAGAAGGAAAAGATTATGTTGTGCAAGAAGGGGATATAATGCTGTTCCGGTTCAATGTCTAATTGAAAAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E272799" ref_strand="+" ref_description="SGN-E272799 [cLEM-21-N6]">
      <seq>gaggagaaaataccaacaagcacctactggatggaaaaccagcacgatcagtatctttgtcggagtttgaaaaggatgctataacacaactttgtcttctaacaatgaagcctgtcatatttgtggcaaatgtagcggaatcagaggtagctgaacctgaaaataatcctcatgtgaaggaagtaattaaaaaagctgctgagttaaattctggtgtggtaactatttcagcgcaggttgagtctgagctatctgaacttcctttagaagaaagaatagaatatttgaaatcgcttggtgtcaatgaaagtggccttggaaatctcatcagagaaacttatggtctcctagggttgcgtacataccttcacttctggcgagaaggaaaccaaagcatggaccatcctcacaggaatgactgctcctcaagcagctggggttattcactccgactttgaaaagggcttcatcagggcagagacggttgcttacgatgactttgtttctgctggttcttttgcagctgcaagggagaaaggactgttgaggttagaaggaaaagattatgttgtgcaagaaggggatataatgctgttccggttcaatgtctaattgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="33894" stop="29097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33596" g_stop="33363" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33362" i_stop="32862" i_length="501">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32861" g_stop="32715" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="384" r_length="148" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32714" i_stop="32610" i_length="105">
            <donor d_prob="0.803" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32609" g_stop="32582" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="412" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32581" i_stop="31687" i_length="895">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31686" g_stop="31616" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="483" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31615" i_stop="30363" i_length="1253">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30362" g_stop="30303" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="543" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30302" i_stop="29472" i_length="831">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29471" g_stop="29397" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="618" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E272799" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33596" e_stop="33363"/>
          <exon e_start="32861" e_stop="32715"/>
          <exon e_start="32609" e_stop="32582"/>
          <exon e_start="31686" e_stop="31616"/>
          <exon e_start="30362" e_stop="30303"/>
          <exon e_start="29471" e_stop="29397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAGAAAATA-CAACAAGCA-CTACTGGATGGAAAACCAGCACGATCAGTATCTTTGTCGGAGTTTGAAAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCTGAGTTAAATTCTGGTGTGGTAACTATTTCAGCGCAGGTCAGTTGACATCTTTCACTTTTCCCTTTTGTATTTGAATCAATCAAAATTCATGCTTATTTCATTTCAGGGGGAGATCTTTATCCTAATGCTCTATTGGAAATTACTTTAATTGTCATATCTAGTTGTGGTCCTCGATACAAGTCTAGAAACTCTCTTTGTTAAAGAAGGTGATACGAGTCTAGAAGCTCTTATGATAAAATAAATACCAGAAGGAAATTCGGGATGTGTGACATTGCCTTTCTATGAGAGAAGGGGTGAAAAGCATGAGCTGACCTTCATGGAAACCGGGACCTGTCAAGATCTCGTAACCATTTTAGGTAGAGGAGCTATTATTTACCAACTTGTTTTCTTTGCCATATGTATTTTTAACTTTTTCCACCTTTAGGGATTAGGAGTTATGATGTGCTAAAGTGAATCTAGCTTTCTACACGATAAAAAATCTCTGTGGAACAGAGGGTTGCTTCCAGTTGCTACATATTTCTGGTCTTCCTATTGCAGGTTGAGTCTGAGCTATCTGAACTTCCTTTAGAAGAAAGAATAGAATATTTGAAATCGCTTGGTGTCAATGAAAGTGGCCTTGGAAATCTCATCAGAGAAACTTATGGTCTCCTAGGGTTGCGTACATA-CTTCACTTCTGGCGAGAAGGTGAAACAAATAAAAGAGCTTTAGTGATATTTGACTGTCGGCGTAGTTTTCGCCTTTGGGTACTGTAGTGTATGAGTATTGAGTTTATCATTGGTTAACTTGCAGGAAACCAAAGCATGGACCATCCTCACAGGTTTGCACTATGGTTTCTCTATTTCAATCTTTTCTTAAAGTGAAAAATAAGCAGTTCTGGTCCCTCTTATAGTATTTTCCAATATTGGTACTTTTTTATCTGGCTAAGCACATAAAACCTCCACTTTTCCTGTTTTTGCTCTTTTAATTCTATTGTTAATGGCACTTCTACAAGTTAATGGAATCTATTTTGTTTCCTTGTCTTCAGTAGCTTTACTTAAATGGCAACTTAGCTTTTCCTATTAAATACCTGTGTCTTTTCCTCTGATTAAAATATTTACTTTTAATCATTTAAAAGGTGGGAAAAGGGAAAGCGCAAAAAAGTCATATTCTTCATGCTCATGCTTGTTGTTTTCTATCCCTCCTCTCACATTGTCTCTACAAGGCTCATTCATTCAACCAGCAGCCTTCTCACTTATTCTCCTTCTCCAGGCTGCTGCCTTTTCTCTCGTTTGACAGCTCCTGCAAACAACCATATGCAGCACTTTTTTCCTCTTCCAAGCTCCTCCACATGAAAGTTCTTCTTCTCCCTACTTCATTTTCTTTTTCTGATGCTGGACTCTTCCTTGTTGTGGGTCAATTTTCTCGAGAAAAACATTCTGGATGGTTGTTTAGGTCAATTTTAAGAATAACAATAAGTTTTATGTGCTTAAAAAATAGAGAGACTAAATTTGGAATTTGCAAAAGAGGGACTAAAACTGTTCTCTAAAAATTTCCTTTACAGGGAACTATAACTGAGTCTCTTGAGCTTCTAGAAAAGAATGATAATTCTTTTGTATTTTGCTAAGACTGGGTACAGATTTCACTATTTGATAGGCTCTTGACTGACCATGTGGTATCTATCCCTTCACATCCTTTATCCTGAAAATGTTTGTCTAACCATTATGATTATATAGGAATGACTGCTCCTCAAGCAGCTGGGGTTATTCACTCCGACTTTGAAAAGGGCTTCATCAGGGCAGAGACGGTGAGTATCATGTAAAAATAGGGCAAGAAACAGTAAACTATGCTTTGGTTACTCCCAAGAATTTCAGCATGTACATTGTTTTTGTTTTAGAGGACTACCATATACTCAATATTTCTGATAAAATTTAGTAGGCATGCATATATATCCTAAACATCGTGAAGGTAATGATTGAGAGCTTAGAGCTTCATATTGGTTAGATCATAGATGATGAAGATATGCTGACAGTGGTGAAACTTTGTACTTATGAATACAAATTGATGTGATTGATTTATTAGTGGTTTGTCACCTTAGATGGATAGAGCATGTCAAAGCAAGTTTTCACATAAATGGTGGAGTTTGATCAAACTATTTTGTTATGTGATATGTGATTATCAGTGACTATGAAGAATTGAGTCTATTTTTCGGCTGGAAATGTAAAATTTACTTACATGGTTATAACTTGTAATCATGAGTCTGCATTTACCCGTTTTACCAGACATAGATATTCTGTTTAAATGTTATTTTGGTGCTGCTAGGTTTGTTTGTGCATAAAATAATAACTAAGAGATGTTCAAATAGTAGCTTTTGATAGGGTGGATGTTAGCTCAACTAACAACAAATATGAGCGAATCCAAACTAACTAGGCTGCTCACATGAATCCTCAGCATCCAGTTAGCTTCATTCAGACAAGTAGTAGTGGATATTTTAATCCTTAATAGGATGGATCTTAGATCAGTTGATTTAGGATTGGTTTGTTTGGTTGTAAATTTGAAGGTTAGATCCATTATGTTGCCCCTTTTATGCTTAATAGTGTGGTTGTATTTTGTCTTTCATTTCAAGTAGCCCAGAAACTCACCACACTGATTATGTGGAACTAATAGAACTGTCTTATGGGTGCTTGGAGTTATTTTGCTCATGGAAGAAAGCTTAACTTGCCACAAACTGGATGTTGGAAACATTTCAGCTTAGTTGACCATCCCCATCCAGCCTCATATGCACATCCAAGACTGGATGATCTTGTTGTGAAGTGTGAACAGACTCAACCATGGCTAACATGGAACTATAGTAGTTATCCTTCGTTATTTTTAGGAGAAATGAGCCTTAGAAATAAACATATTCAATGATTTGTCATCTAGGTGTGTTCTTATTGTCTTGTATGTTATTAGCAGAGTGTTTTTTCACTATAAGTTTTTGAATGGTCTTTCCCTTTACCCTTTAATAAAAAAACTTTTTTTAATGTTTTTAAATGGTTTGTCGACTTCACTTCTTTGCAGGTTGCTTACGATGACTTTGTTTCTGCTGGTTCTTTTGCAGCTGCAAGGGAGAAAGGACTGGTAAGTTGGCACTTTCTGATCATTTATGGTTCTTGATACTGTTACTTCTGTATTTTTGACCTCAGATGTTGGGAACTGTGTAAAATGTCTTTGTAGTATTTGATTGAGACTGTAAAGCAGTATATAACCCATTGATAGTCTACCTGACCAAGTGTATGATTGAAATTTGAAAACTAGCTTTCTTTTCAATTTCAGATATATCTGAACCTAAATAGGGTATTCCCCCATGGGCCAAAGGTACCCTCAGATATTCCTTGGCTACCTGAAATGTCTCGAGGAATCAGTTAAAACTTAAGACTCGTGATTGCAGTGTAATTTCAAAAATAGATAAATATTTAAAGTAACGGTAAATAAGCTAAATATTTCAATTTTAGCTGTTAAAAAAGTTTATTTTAAAAAAAAAACCCTTAAAATAACCTTAGAGTCTATCTTTGGCTTGTAAGCACATGCAGTGGTTACATTAAAATACCTTCCCGAAGCAAAAAGCTTAGCCAAACACAAATAAAGAATCCATGGTTGTTTTTGGTGTCATTTCCTGATTATTGTCAATTGGAACCTTTTTAAATTTTTTAGTGAACCATTATCATCTCAATAACCTTCTTACTTTGGCTCCAGCACTTCAAAATTAAATGTTCATTGCCTCCCCTATCCCCAAATTGTAATGAGGTTGCTAATCTCATGTAACTTTTACTAGTAAGTAGTTTTCTTTCACAAAGATAATTACTTGTGTAGTAGAATGTAAACGGTGCTTCTATGTGAGCACTAAGTCTACTGACCCGTGCAAACAAGAGAATAGATCAAGCTGGTTACAGGATTTATCTGTGTATGCAGTTGAGGTTAGAAGGAAAAGATTATGTTGTGCAAGAAGGGGATATAATGCTGTTCCGGTTCAATGTCTAATTGAAA</genome_strand>
        <mrna_strand>GAGGAGAAAATACCAACAAGCACCTACTGGATGGAAAACCAGCACGATCAGTATCTTTGTCGGAGTTTGAAAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCTGAGTTAAATTCTGGTGTGGTAACTATTTCAGCGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTCTGAGCTATCTGAACTTCCTTTAGAAGAAAGAATAGAATATTTGAAATCGCTTGGTGTCAATGAAAGTGGCCTTGGAAATCTCATCAGAGAAACTTATGGTCTCCTAGGGTTGCGTACATACCTTCACTTCTGGCGAGAAG.........................................................................................................GAAACCAAAGCATGGACCATCCTCACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGACTGCTCCTCAAGCAGCTGGGGTTATTCACTCCGACTTTGAAAAGGGCTTCATCAGGGCAGAGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTACGATGACTTTGTTTCTGCTGGTTCTTTTGCAGCTGCAAGGGAGAAAGGACTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGGTTAGAAGGAAAAGATTATGTTGTGCAAGAAGGGGATATAATGCTGTTCCGGTTCAATGTCTAATTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E232994" ref_strand="+" ref_description="SGN-E232994 [cLED-6-H21]">
      <seq>tacctgaaatgtctcgaggaatcagttaaaacttaagactcgtgattgcagtgtaatttcaaaaatagataaatatttaaagtaacggtaaataagctaaatatttcaattttagctgttaaaaaagtttattttaaaaaaaaaacccttaaaataaccttagagtctatctttggcttgtaagcacatgcagtggttacattaaaataccttcccgaagcaaaaagcttagccaaacacaaataaagaatccatggttgtttttggtgtcatttcctgattattgtcaattggaacctttttaaattttttagtgaaccattatcatctcaataaccttcttactttggctccagcacttcaaaattaaatgttcattgcctcccctatccccaaattgtaatgaggttgctaatctcatgtaacttttactagtaagtagttttctttcacaaagataattacttgtgtagtagaatgtaaacggtgcttctatgtgagcactaagtctactgacccgtgcaaacaagagaatagatcaagctggttacaggatttatctgtgtatgcagttgaagttagaaggaaaagattatgttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="30343" stop="29142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30043" g_stop="29442" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="602" r_length="602" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E232994" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30043" e_stop="29442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTGAAATGTCTCGAGGAATCAGTTAAAACTTAAGACTCGTGATTGCAGTGTAATTTCAAAAATAGATAAATATTTAAAGTAACGGTAAATAAGCTAAATATTTCAATTTTAGCTGTTAAAAAAGTTTATTTTAAAAAAAAAACCCTTAAAATAACCTTAGAGTCTATCTTTGGCTTGTAAGCACATGCAGTGGTTACATTAAAATACCTTCCCGAAGCAAAAAGCTTAGCCAAACACAAATAAAGAATCCATGGTTGTTTTTGGTGTCATTTCCTGATTATTGTCAATTGGAACCTTTTTAAATTTTTTAGTGAACCATTATCATCTCAATAACCTTCTTACTTTGGCTCCAGCACTTCAAAATTAAATGTTCATTGCCTCCCCTATCCCCAAATTGTAATGAGGTTGCTAATCTCATGTAACTTTTACTAGTAAGTAGTTTTCTTTCACAAAGATAATTACTTGTGTAGTAGAATGTAAACGGTGCTTCTATGTGAGCACTAAGTCTACTGACCCGTGCAAACAAGAGAATAGATCAAGCTGGTTACAGGATTTATCTGTGTATGCAGTTGAGGTTAGAAGGAAAAGATTATGTTGTG</genome_strand>
        <mrna_strand>TACCTGAAATGTCTCGAGGAATCAGTTAAAACTTAAGACTCGTGATTGCAGTGTAATTTCAAAAATAGATAAATATTTAAAGTAACGGTAAATAAGCTAAATATTTCAATTTTAGCTGTTAAAAAAGTTTATTTTAAAAAAAAAACCCTTAAAATAACCTTAGAGTCTATCTTTGGCTTGTAAGCACATGCAGTGGTTACATTAAAATACCTTCCCGAAGCAAAAAGCTTAGCCAAACACAAATAAAGAATCCATGGTTGTTTTTGGTGTCATTTCCTGATTATTGTCAATTGGAACCTTTTTAAATTTTTTAGTGAACCATTATCATCTCAATAACCTTCTTACTTTGGCTCCAGCACTTCAAAATTAAATGTTCATTGCCTCCCCTATCCCCAAATTGTAATGAGGTTGCTAATCTCATGTAACTTTTACTAGTAAGTAGTTTTCTTTCACAAAGATAATTACTTGTGTAGTAGAATGTAAACGGTGCTTCTATGTGAGCACTAAGTCTACTGACCCGTGCAAACAAGAGAATAGATCAAGCTGGTTACAGGATTTATCTGTGTATGCAGTTGAAGTTAGAAGGAAAAGATTATGTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E236379" ref_strand="+" ref_description="SGN-E236379 [cLED-13-E20]">
      <seq>tacctgaaatgtctcgaggaatcagttaaaacttaagactcgtgattgcagtgtaatttcaaaaatagataaatatttaaagtaacggtaaataagctaaatatttcaattttagctgttaaaaaagtttattttaaaaaaaaaacccttaaaataaccttagagtctatctttggcttgtaagcacatgcagtggttacattaaaataccttcccgaagcaaaaagcttagccaaacacaaataaagaatccatggttgtttttggtgtcatttcctgattattgtcaattggaacctttttaaattttttagtgaaccattatcatctcaataaccttcttactttggctccagcacttcaaaattaaatgttcattgcctcccctatccccaaattgtaatgaggttgctaatctcatgtaacttttactagtaagtagttttctttcacaaagataattacttgtgtagtagaatgtaaacggtgcttctatgtgagcactaagtctactgacccgtgcaaacaagagaatagatcaagctggttacaggatttatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="30343" stop="29182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30043" g_stop="29482" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E236379" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30043" e_stop="29482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTGAAATGTCTCGAGGAATCAGTTAAAACTTAAGACTCGTGATTGCAGTGTAATTTCAAAAATAGATAAATATTTAAAGTAACGGTAAATAAGCTAAATATTTCAATTTTAGCTGTTAAAAAAGTTTATTTTAAAAAAAAAACCCTTAAAATAACCTTAGAGTCTATCTTTGGCTTGTAAGCACATGCAGTGGTTACATTAAAATACCTTCCCGAAGCAAAAAGCTTAGCCAAACACAAATAAAGAATCCATGGTTGTTTTTGGTGTCATTTCCTGATTATTGTCAATTGGAACCTTTTTAAATTTTTTAGTGAACCATTATCATCTCAATAACCTTCTTACTTTGGCTCCAGCACTTCAAAATTAAATGTTCATTGCCTCCCCTATCCCCAAATTGTAATGAGGTTGCTAATCTCATGTAACTTTTACTAGTAAGTAGTTTTCTTTCACAAAGATAATTACTTGTGTAGTAGAATGTAAACGGTGCTTCTATGTGAGCACTAAGTCTACTGACCCGTGCAAACAAGAGAATAGATCAAGCTGGTTACAGGATTTATCT</genome_strand>
        <mrna_strand>TACCTGAAATGTCTCGAGGAATCAGTTAAAACTTAAGACTCGTGATTGCAGTGTAATTTCAAAAATAGATAAATATTTAAAGTAACGGTAAATAAGCTAAATATTTCAATTTTAGCTGTTAAAAAAGTTTATTTTAAAAAAAAAACCCTTAAAATAACCTTAGAGTCTATCTTTGGCTTGTAAGCACATGCAGTGGTTACATTAAAATACCTTCCCGAAGCAAAAAGCTTAGCCAAACACAAATAAAGAATCCATGGTTGTTTTTGGTGTCATTTCCTGATTATTGTCAATTGGAACCTTTTTAAATTTTTTAGTGAACCATTATCATCTCAATAACCTTCTTACTTTGGCTCCAGCACTTCAAAATTAAATGTTCATTGCCTCCCCTATCCCCAAATTGTAATGAGGTTGCTAATCTCATGTAACTTTTACTAGTAAGTAGTTTTCTTTCACAAAGATAATTACTTGTGTAGTAGAATGTAAACGGTGCTTCTATGTGAGCACTAAGTCTACTGACCCGTGCAAACAAGAGAATAGATCAAGCTGGTTACAGGATTTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E728801" ref_strand="+" ref_description="SGN-E728801 [LA19AA02]">
      <seq>gttcatgtgaatgggaaggttgagccaaaagctgatattgatgtaatcaacttggaattaattttctcagatttggatcagattgagaaaagaatggagaaactcaaaaaaggtagagctaaagattcacaagctaaagtaaaggaggaagcagaaaagtctgccttggagaaaatacaacaagcactactggatggaaaaccagcacgatcagtatctttgtcggagtttgaaaaggatgctataacacaactttgtcttctaacaatgaagcctgtcatatttgtggcaaatgtagcggaatcagaggtagctgaacctgaaaataatcctcatgtgaaggaagtaattaaaaaagctgctgagttaaattctggtgtggtaactatttcagcgcaggttgagtctgagctatctgaacttcctttagaagaaagaatagaatatttgaaatcgcttggtgtcaatgaaagtggccttggaaatctcatcagagaaacttatggtctcctagggttgcgtacatacttcacttctggcgagaaggaaaccaaagcatggaccatcctcacaggaatgactgctcctcaagcagctggggttattcactccgactttgaaaagggcttcatcatggcagagacggttgcttacgatgactttgtttctgctggttcttttgcagctgcaagggagaaaggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="34585" stop="30004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34285" g_stop="34205" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34204" i_stop="33829" i_length="376">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33828" g_stop="33766" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="144" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33765" i_stop="33618" i_length="148">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33617" g_stop="33363" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="399" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33362" i_stop="32862" i_length="501">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32861" g_stop="32715" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="546" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32714" i_stop="32610" i_length="105">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32609" g_stop="32582" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="574" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32581" i_stop="31687" i_length="895">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31686" g_stop="31616" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="645" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="31615" i_stop="30363" i_length="1253">
            <donor d_prob="0.909" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30362" g_stop="30304" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="704" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E728801" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34285" e_stop="34205"/>
          <exon e_start="33828" e_stop="33766"/>
          <exon e_start="33617" e_stop="33363"/>
          <exon e_start="32861" e_stop="32715"/>
          <exon e_start="32609" e_stop="32582"/>
          <exon e_start="31686" e_stop="31616"/>
          <exon e_start="30362" e_stop="30304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCATGTGAATGGGAAGGTTGAGCCAAAAGCTGATATTGATGTAATCAACTTGGAATTAATTTTCTCAGATTTGGATCAGGTACTTGTTACAGTTCTGCTTTACATTTACAGGATGCTAACATAAACTAGGGGTATAGCTCATGGAGATGTATGCAGATAAATGGAGAAAAAAGAGGACATAAGATGCTTTTTATTAAAATGGACTAAATACAGATTCGAATGCATGTGATGATGCTAGTATTGCACGAGAGGTGTATATGAATAATAGCTTTTTACGTACCTATGAAGCATGCATGACAGTCTCATGATGGTGTCAGAAAAATGCACACAAGACAAGGGATGTGGATGATATATTTTTTCTTTTTTTTTCAACAGTAATTTTGTAGTCTTTCTTCTCCTTGTAAAGTTTCTAGGTATGCGAACCAACTAATGACACTAAGTTTACAAGAATGCAGATTGAGAAAAGAATGGAGAAACTCAAAAAAGGTAGAGCTAAAGATTCACAAGCTAAAGTAAAGGTAACCTTATCTATTAGTTTCTGGGAGATTAAGTGAGTAGTTCATCCTTGCAAGGTTTTAAAATGTTGATTGTTGTATGATTGACATCCTCGTAGTTACATTACAAACGTTGTCGTTGGGGATGTCTATTTTAATATTATCGTTTCAGGAGGAAGCAGAAAAGTCTGCCTTGGAGAAAATACAACAAGCACTACTGGATGGAAAACCAGCACGATCAGTATCTTTGTCGGAGTTTGAAAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCTGAGTTAAATTCTGGTGTGGTAACTATTTCAGCGCAGGTCAGTTGACATCTTTCACTTTTCCCTTTTGTATTTGAATCAATCAAAATTCATGCTTATTTCATTTCAGGGGGAGATCTTTATCCTAATGCTCTATTGGAAATTACTTTAATTGTCATATCTAGTTGTGGTCCTCGATACAAGTCTAGAAACTCTCTTTGTTAAAGAAGGTGATACGAGTCTAGAAGCTCTTATGATAAAATAAATACCAGAAGGAAATTCGGGATGTGTGACATTGCCTTTCTATGAGAGAAGGGGTGAAAAGCATGAGCTGACCTTCATGGAAACCGGGACCTGTCAAGATCTCGTAACCATTTTAGGTAGAGGAGCTATTATTTACCAACTTGTTTTCTTTGCCATATGTATTTTTAACTTTTTCCACCTTTAGGGATTAGGAGTTATGATGTGCTAAAGTGAATCTAGCTTTCTACACGATAAAAAATCTCTGTGGAACAGAGGGTTGCTTCCAGTTGCTACATATTTCTGGTCTTCCTATTGCAGGTTGAGTCTGAGCTATCTGAACTTCCTTTAGAAGAAAGAATAGAATATTTGAAATCGCTTGGTGTCAATGAAAGTGGCCTTGGAAATCTCATCAGAGAAACTTATGGTCTCCTAGGGTTGCGTACATACTTCACTTCTGGCGAGAAGGTGAAACAAATAAAAGAGCTTTAGTGATATTTGACTGTCGGCGTAGTTTTCGCCTTTGGGTACTGTAGTGTATGAGTATTGAGTTTATCATTGGTTAACTTGCAGGAAACCAAAGCATGGACCATCCTCACAGGTTTGCACTATGGTTTCTCTATTTCAATCTTTTCTTAAAGTGAAAAATAAGCAGTTCTGGTCCCTCTTATAGTATTTTCCAATATTGGTACTTTTTTATCTGGCTAAGCACATAAAACCTCCACTTTTCCTGTTTTTGCTCTTTTAATTCTATTGTTAATGGCACTTCTACAAGTTAATGGAATCTATTTTGTTTCCTTGTCTTCAGTAGCTTTACTTAAATGGCAACTTAGCTTTTCCTATTAAATACCTGTGTCTTTTCCTCTGATTAAAATATTTACTTTTAATCATTTAAAAGGTGGGAAAAGGGAAAGCGCAAAAAAGTCATATTCTTCATGCTCATGCTTGTTGTTTTCTATCCCTCCTCTCACATTGTCTCTACAAGGCTCATTCATTCAACCAGCAGCCTTCTCACTTATTCTCCTTCTCCAGGCTGCTGCCTTTTCTCTCGTTTGACAGCTCCTGCAAACAACCATATGCAGCACTTTTTTCCTCTTCCAAGCTCCTCCACATGAAAGTTCTTCTTCTCCCTACTTCATTTTCTTTTTCTGATGCTGGACTCTTCCTTGTTGTGGGTCAATTTTCTCGAGAAAAACATTCTGGATGGTTGTTTAGGTCAATTTTAAGAATAACAATAAGTTTTATGTGCTTAAAAAATAGAGAGACTAAATTTGGAATTTGCAAAAGAGGGACTAAAACTGTTCTCTAAAAATTTCCTTTACAGGGAACTATAACTGAGTCTCTTGAGCTTCTAGAAAAGAATGATAATTCTTTTGTATTTTGCTAAGACTGGGTACAGATTTCACTATTTGATAGGCTCTTGACTGACCATGTGGTATCTATCCCTTCACATCCTTTATCCTGAAAATGTTTGTCTAACCATTATGATTATATAGGAATGACTGCTCCTCAAGCAGCTGGGGTTATTCACTCCGACTTTGAAAAGGGCTTCATCAGGGCAGAGACGGTGAGTATCATGTAAAAATAGGGCAAGAAACAGTAAACTATGCTTTGGTTACTCCCAAGAATTTCAGCATGTACATTGTTTTTGTTTTAGAGGACTACCATATACTCAATATTTCTGATAAAATTTAGTAGGCATGCATATATATCCTAAACATCGTGAAGGTAATGATTGAGAGCTTAGAGCTTCATATTGGTTAGATCATAGATGATGAAGATATGCTGACAGTGGTGAAACTTTGTACTTATGAATACAAATTGATGTGATTGATTTATTAGTGGTTTGTCACCTTAGATGGATAGAGCATGTCAAAGCAAGTTTTCACATAAATGGTGGAGTTTGATCAAACTATTTTGTTATGTGATATGTGATTATCAGTGACTATGAAGAATTGAGTCTATTTTTCGGCTGGAAATGTAAAATTTACTTACATGGTTATAACTTGTAATCATGAGTCTGCATTTACCCGTTTTACCAGACATAGATATTCTGTTTAAATGTTATTTTGGTGCTGCTAGGTTTGTTTGTGCATAAAATAATAACTAAGAGATGTTCAAATAGTAGCTTTTGATAGGGTGGATGTTAGCTCAACTAACAACAAATATGAGCGAATCCAAACTAACTAGGCTGCTCACATGAATCCTCAGCATCCAGTTAGCTTCATTCAGACAAGTAGTAGTGGATATTTTAATCCTTAATAGGATGGATCTTAGATCAGTTGATTTAGGATTGGTTTGTTTGGTTGTAAATTTGAAGGTTAGATCCATTATGTTGCCCCTTTTATGCTTAATAGTGTGGTTGTATTTTGTCTTTCATTTCAAGTAGCCCAGAAACTCACCACACTGATTATGTGGAACTAATAGAACTGTCTTATGGGTGCTTGGAGTTATTTTGCTCATGGAAGAAAGCTTAACTTGCCACAAACTGGATGTTGGAAACATTTCAGCTTAGTTGACCATCCCCATCCAGCCTCATATGCACATCCAAGACTGGATGATCTTGTTGTGAAGTGTGAACAGACTCAACCATGGCTAACATGGAACTATAGTAGTTATCCTTCGTTATTTTTAGGAGAAATGAGCCTTAGAAATAAACATATTCAATGATTTGTCATCTAGGTGTGTTCTTATTGTCTTGTATGTTATTAGCAGAGTGTTTTTTCACTATAAGTTTTTGAATGGTCTTTCCCTTTACCCTTTAATAAAAAAACTTTTTTTAATGTTTTTAAATGGTTTGTCGACTTCACTTCTTTGCAGGTTGCTTACGATGACTTTGTTTCTGCTGGTTCTTTTGCAGCTGCAAGGGAGAAAGGACT</genome_strand>
        <mrna_strand>GTTCATGTGAATGGGAAGGTTGAGCCAAAAGCTGATATTGATGTAATCAACTTGGAATTAATTTTCTCAGATTTGGATCAG........................................................................................................................................................................................................................................................................................................................................................................................ATTGAGAAAAGAATGGAGAAACTCAAAAAAGGTAGAGCTAAAGATTCACAAGCTAAAGTAAAG....................................................................................................................................................GAGGAAGCAGAAAAGTCTGCCTTGGAGAAAATACAACAAGCACTACTGGATGGAAAACCAGCACGATCAGTATCTTTGTCGGAGTTTGAAAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCTGAGTTAAATTCTGGTGTGGTAACTATTTCAGCGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTCTGAGCTATCTGAACTTCCTTTAGAAGAAAGAATAGAATATTTGAAATCGCTTGGTGTCAATGAAAGTGGCCTTGGAAATCTCATCAGAGAAACTTATGGTCTCCTAGGGTTGCGTACATACTTCACTTCTGGCGAGAAG.........................................................................................................GAAACCAAAGCATGGACCATCCTCACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGACTGCTCCTCAAGCAGCTGGGGTTATTCACTCCGACTTTGAAAAGGGCTTCATCATGGCAGAGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTACGATGACTTTGTTTCTGCTGGTTCTTTTGCAGCTGCAAGGGAGAAAGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E209664" ref_strand="+" ref_description="SGN-E209664 [cLEC-54-F4]">
      <seq>aaaggatgctataacacaactttgtcttctaacaatgaagcctgtcatatttgtggcaaatgtagcggaatcagaggtagctgaacctgaaaataatcctcatgtgaaggaagtaattaaaaaagctgctgagttaaattctggtgtggtaactatttcagcgcaggttgagtctgagctatctgaacttcctttagaagaaagaatagaatatttgaaatcgcttggtgtcaatgaaagtggccttggaaatctcatcagagaaacttatggtctcctagggttgcgtacatacttcacttctggcgagaaggaaaccaaagcatggaccatcctcacaggaatgactgctcctcaagcagctggggttattcactccgactttgaaaagggcttcatcagggcagagacggttgcttacgatgactttgtttctgctggttcttttgcagctgcaaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="33828" stop="30014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33528" g_stop="33363" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33362" i_stop="32862" i_length="501">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32861" g_stop="32715" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="313" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32714" i_stop="32610" i_length="105">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32609" g_stop="32582" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="341" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32581" i_stop="31687" i_length="895">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31686" g_stop="31616" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="412" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31615" i_stop="30363" i_length="1253">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30362" g_stop="30314" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="461" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E209664" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33528" e_stop="33363"/>
          <exon e_start="32861" e_stop="32715"/>
          <exon e_start="32609" e_stop="32582"/>
          <exon e_start="31686" e_stop="31616"/>
          <exon e_start="30362" e_stop="30314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCTGAGTTAAATTCTGGTGTGGTAACTATTTCAGCGCAGGTCAGTTGACATCTTTCACTTTTCCCTTTTGTATTTGAATCAATCAAAATTCATGCTTATTTCATTTCAGGGGGAGATCTTTATCCTAATGCTCTATTGGAAATTACTTTAATTGTCATATCTAGTTGTGGTCCTCGATACAAGTCTAGAAACTCTCTTTGTTAAAGAAGGTGATACGAGTCTAGAAGCTCTTATGATAAAATAAATACCAGAAGGAAATTCGGGATGTGTGACATTGCCTTTCTATGAGAGAAGGGGTGAAAAGCATGAGCTGACCTTCATGGAAACCGGGACCTGTCAAGATCTCGTAACCATTTTAGGTAGAGGAGCTATTATTTACCAACTTGTTTTCTTTGCCATATGTATTTTTAACTTTTTCCACCTTTAGGGATTAGGAGTTATGATGTGCTAAAGTGAATCTAGCTTTCTACACGATAAAAAATCTCTGTGGAACAGAGGGTTGCTTCCAGTTGCTACATATTTCTGGTCTTCCTATTGCAGGTTGAGTCTGAGCTATCTGAACTTCCTTTAGAAGAAAGAATAGAATATTTGAAATCGCTTGGTGTCAATGAAAGTGGCCTTGGAAATCTCATCAGAGAAACTTATGGTCTCCTAGGGTTGCGTACATACTTCACTTCTGGCGAGAAGGTGAAACAAATAAAAGAGCTTTAGTGATATTTGACTGTCGGCGTAGTTTTCGCCTTTGGGTACTGTAGTGTATGAGTATTGAGTTTATCATTGGTTAACTTGCAGGAAACCAAAGCATGGACCATCCTCACAGGTTTGCACTATGGTTTCTCTATTTCAATCTTTTCTTAAAGTGAAAAATAAGCAGTTCTGGTCCCTCTTATAGTATTTTCCAATATTGGTACTTTTTTATCTGGCTAAGCACATAAAACCTCCACTTTTCCTGTTTTTGCTCTTTTAATTCTATTGTTAATGGCACTTCTACAAGTTAATGGAATCTATTTTGTTTCCTTGTCTTCAGTAGCTTTACTTAAATGGCAACTTAGCTTTTCCTATTAAATACCTGTGTCTTTTCCTCTGATTAAAATATTTACTTTTAATCATTTAAAAGGTGGGAAAAGGGAAAGCGCAAAAAAGTCATATTCTTCATGCTCATGCTTGTTGTTTTCTATCCCTCCTCTCACATTGTCTCTACAAGGCTCATTCATTCAACCAGCAGCCTTCTCACTTATTCTCCTTCTCCAGGCTGCTGCCTTTTCTCTCGTTTGACAGCTCCTGCAAACAACCATATGCAGCACTTTTTTCCTCTTCCAAGCTCCTCCACATGAAAGTTCTTCTTCTCCCTACTTCATTTTCTTTTTCTGATGCTGGACTCTTCCTTGTTGTGGGTCAATTTTCTCGAGAAAAACATTCTGGATGGTTGTTTAGGTCAATTTTAAGAATAACAATAAGTTTTATGTGCTTAAAAAATAGAGAGACTAAATTTGGAATTTGCAAAAGAGGGACTAAAACTGTTCTCTAAAAATTTCCTTTACAGGGAACTATAACTGAGTCTCTTGAGCTTCTAGAAAAGAATGATAATTCTTTTGTATTTTGCTAAGACTGGGTACAGATTTCACTATTTGATAGGCTCTTGACTGACCATGTGGTATCTATCCCTTCACATCCTTTATCCTGAAAATGTTTGTCTAACCATTATGATTATATAGGAATGACTGCTCCTCAAGCAGCTGGGGTTATTCACTCCGACTTTGAAAAGGGCTTCATCAGGGCAGAGACGGTGAGTATCATGTAAAAATAGGGCAAGAAACAGTAAACTATGCTTTGGTTACTCCCAAGAATTTCAGCATGTACATTGTTTTTGTTTTAGAGGACTACCATATACTCAATATTTCTGATAAAATTTAGTAGGCATGCATATATATCCTAAACATCGTGAAGGTAATGATTGAGAGCTTAGAGCTTCATATTGGTTAGATCATAGATGATGAAGATATGCTGACAGTGGTGAAACTTTGTACTTATGAATACAAATTGATGTGATTGATTTATTAGTGGTTTGTCACCTTAGATGGATAGAGCATGTCAAAGCAAGTTTTCACATAAATGGTGGAGTTTGATCAAACTATTTTGTTATGTGATATGTGATTATCAGTGACTATGAAGAATTGAGTCTATTTTTCGGCTGGAAATGTAAAATTTACTTACATGGTTATAACTTGTAATCATGAGTCTGCATTTACCCGTTTTACCAGACATAGATATTCTGTTTAAATGTTATTTTGGTGCTGCTAGGTTTGTTTGTGCATAAAATAATAACTAAGAGATGTTCAAATAGTAGCTTTTGATAGGGTGGATGTTAGCTCAACTAACAACAAATATGAGCGAATCCAAACTAACTAGGCTGCTCACATGAATCCTCAGCATCCAGTTAGCTTCATTCAGACAAGTAGTAGTGGATATTTTAATCCTTAATAGGATGGATCTTAGATCAGTTGATTTAGGATTGGTTTGTTTGGTTGTAAATTTGAAGGTTAGATCCATTATGTTGCCCCTTTTATGCTTAATAGTGTGGTTGTATTTTGTCTTTCATTTCAAGTAGCCCAGAAACTCACCACACTGATTATGTGGAACTAATAGAACTGTCTTATGGGTGCTTGGAGTTATTTTGCTCATGGAAGAAAGCTTAACTTGCCACAAACTGGATGTTGGAAACATTTCAGCTTAGTTGACCATCCCCATCCAGCCTCATATGCACATCCAAGACTGGATGATCTTGTTGTGAAGTGTGAACAGACTCAACCATGGCTAACATGGAACTATAGTAGTTATCCTTCGTTATTTTTAGGAGAAATGAGCCTTAGAAATAAACATATTCAATGATTTGTCATCTAGGTGTGTTCTTATTGTCTTGTATGTTATTAGCAGAGTGTTTTTTCACTATAAGTTTTTGAATGGTCTTTCCCTTTACCCTTTAATAAAAAAACTTTTTTTAATGTTTTTAAATGGTTTGTCGACTTCACTTCTTTGCAGGTTGCTTACGATGACTTTGTTTCTGCTGGTTCTTTTGCAGCTGCAAGGG</genome_strand>
        <mrna_strand>AAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCTGAGTTAAATTCTGGTGTGGTAACTATTTCAGCGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTCTGAGCTATCTGAACTTCCTTTAGAAGAAAGAATAGAATATTTGAAATCGCTTGGTGTCAATGAAAGTGGCCTTGGAAATCTCATCAGAGAAACTTATGGTCTCCTAGGGTTGCGTACATACTTCACTTCTGGCGAGAAG.........................................................................................................GAAACCAAAGCATGGACCATCCTCACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGACTGCTCCTCAAGCAGCTGGGGTTATTCACTCCGACTTTGAAAAGGGCTTCATCAGGGCAGAGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTACGATGACTTTGTTTCTGCTGGTTCTTTTGCAGCTGCAAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E240119" ref_strand="+" ref_description="SGN-E240119 [cLED-32-M22]">
      <seq>gactccatacttcaggtagtacgttgttttgaggacaatgacattgttcatgtgaatgggaaggttgagccaaaagctgatattgatgtaatcaacttggaattaattttctcagatttggatcagattgagaaaagaatggagaaactcaaaaaaggtagagctaaagattcacaagctaaagtaaagaaaagtctgccttggagaaaatacaacaagcactactggatggaaaaccagcacgatcagtatctttgtcggagtttgaaaaggatgctataacacaactttgtcttctaacaatgaagcctgtcatatttgtggcaaatgtagcggaatcagaggtagctgaacctgaaaataatcctcatgtgaaggaagtaattaaaaaagctgctgagttaaattctggtgtggtaactatttcagcgcaggttgagtctgagctatctgaacttcctttagaagaaagaatagaatatttgaaatcgcttggtgtcaatgaaagtggccttggaaatctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="34626" stop="32471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34315" g_stop="34205" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="126" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34204" i_stop="33829" i_length="376">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33828" g_stop="33766" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="189" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33765" i_stop="33608" i_length="158">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33607" g_stop="33363" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="434" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33362" i_stop="32862" i_length="501">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32861" g_stop="32771" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="525" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E240119" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34315" e_stop="34205"/>
          <exon e_start="33828" e_stop="33766"/>
          <exon e_start="33607" e_stop="33363"/>
          <exon e_start="32861" e_stop="32771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGTACGTTGTTTTGAGGACAATGACATTGTTCATGTGAATGGGAAGGTTGAGCCAAAAGCTGATATTGATGTAATCAACTTGGAATTAATTTTCTCAGATTTGGATCAGGTACTTGTTACAGTTCTGCTTTACATTTACAGGATGCTAACATAAACTAGGGGTATAGCTCATGGAGATGTATGCAGATAAATGGAGAAAAAAGAGGACATAAGATGCTTTTTATTAAAATGGACTAAATACAGATTCGAATGCATGTGATGATGCTAGTATTGCACGAGAGGTGTATATGAATAATAGCTTTTTACGTACCTATGAAGCATGCATGACAGTCTCATGATGGTGTCAGAAAAATGCACACAAGACAAGGGATGTGGATGATATATTTTTTCTTTTTTTTTCAACAGTAATTTTGTAGTCTTTCTTCTCCTTGTAAAGTTTCTAGGTATGCGAACCAACTAATGACACTAAGTTTACAAGAATGCAGATTGAGAAAAGAATGGAGAAACTCAAAAAAGGTAGAGCTAAAGATTCACAAGCTAAAGTAAAGGTAACCTTATCTATTAGTTTCTGGGAGATTAAGTGAGTAGTTCATCCTTGCAAGGTTTTAAAATGTTGATTGTTGTATGATTGACATCCTCGTAGTTACATTACAAACGTTGTCGTTGGGGATGTCTATTTTAATATTATCGTTTCAGGAGGAAGCAGAAAAGTCTGCCTTGGAGAAAATACAACAAGCACTACTGGATGGAAAACCAGCACGATCAGTATCTTTGTCGGAGTTTGAAAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCTGAGTTAAATTCTGGTGTGGTAACTATTTCAGCGCAGGTCAGTTGACATCTTTCACTTTTCCCTTTTGTATTTGAATCAATCAAAATTCATGCTTATTTCATTTCAGGGGGAGATCTTTATCCTAATGCTCTATTGGAAATTACTTTAATTGTCATATCTAGTTGTGGTCCTCGATACAAGTCTAGAAACTCTCTTTGTTAAAGAAGGTGATACGAGTCTAGAAGCTCTTATGATAAAATAAATACCAGAAGGAAATTCGGGATGTGTGACATTGCCTTTCTATGAGAGAAGGGGTGAAAAGCATGAGCTGACCTTCATGGAAACCGGGACCTGTCAAGATCTCGTAACCATTTTAGGTAGAGGAGCTATTATTTACCAACTTGTTTTCTTTGCCATATGTATTTTTAACTTTTTCCACCTTTAGGGATTAGGAGTTATGATGTGCTAAAGTGAATCTAGCTTTCTACACGATAAAAAATCTCTGTGGAACAGAGGGTTGCTTCCAGTTGCTACATATTTCTGGTCTTCCTATTGCAGGTTGAGTCTGAGCTATCTGAACTTCCTTTAGAAGAAAGAATAGAATATTTGAAATCGCTTGGTGTCAATGAAAGTGGCCTTGGAAATCTCA</genome_strand>
        <mrna_strand>GTAGTACGTTGTTTTGAGGACAATGACATTGTTCATGTGAATGGGAAGGTTGAGCCAAAAGCTGATATTGATGTAATCAACTTGGAATTAATTTTCTCAGATTTGGATCAG........................................................................................................................................................................................................................................................................................................................................................................................ATTGAGAAAAGAATGGAGAAACTCAAAAAAGGTAGAGCTAAAGATTCACAAGCTAAAGTAAAG..............................................................................................................................................................AAAAGTCTGCCTTGGAGAAAATACAACAAGCACTACTGGATGGAAAACCAGCACGATCAGTATCTTTGTCGGAGTTTGAAAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCTGAGTTAAATTCTGGTGTGGTAACTATTTCAGCGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTCTGAGCTATCTGAACTTCCTTTAGAAGAAAGAATAGAATATTTGAAATCGCTTGGTGTCAATGAAAGTGGCCTTGGAAATCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E729328" ref_strand="+" ref_description="SGN-E729328 [LA20CH08]">
      <seq>gggatagtcgctgtccctgatacacgtctccatgttctttctgatataagcaaatccaaacgagcggtcccggcttcgatagagtttgttgatattgctggacttgtaaagggagccagtcaaggggagggcctggggaataagttcttgtcacatatacgtgaagtggactccatacttcaggtagtacgttgttttgaggacaatgacattgttcatgtgaatgggaaggttgagccaaaagctgatattgatgtaatcaacttggaattaattttctcagatttggatcagattgagaaaagaatggagaaactcaaaaaaggtagagctaaagattcacaagctaaagtaaaggaggaagcagaaaagtctgccttggagaaaatacaacaagcactactggatggaaaaccagcacgatcagtatctttgtcggagtttgaaaaggatgctataacacaactttgtcttctaacaatgaagcctgtcatatttgtggcaaatgtagcggaatcagaggtagctgaacctgaaaataatcctcatgtgaaggaagtaattaaaaaagctgctgagttaaattctggtgtggtaactatttcagcgcaggttgagtctgagctatctgaacttcctttagaagaaagaatagaatatttgaaatcgctcggtgtcaatgaaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="36231" stop="32486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35931" g_stop="35803" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35802" i_stop="35677" i_length="126">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35676" g_stop="35623" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="183" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35622" i_stop="34316" i_length="1307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34315" g_stop="34205" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="294" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34204" i_stop="33829" i_length="376">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33828" g_stop="33766" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="357" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33765" i_stop="33618" i_length="148">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33617" g_stop="33363" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="612" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33362" i_stop="32862" i_length="501">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32861" g_stop="32786" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="688" r_length="76" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E729328" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35931" e_stop="35803"/>
          <exon e_start="35676" e_stop="35623"/>
          <exon e_start="34315" e_stop="34205"/>
          <exon e_start="33828" e_stop="33766"/>
          <exon e_start="33617" e_stop="33363"/>
          <exon e_start="32861" e_stop="32786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGATAGTCGCTGTCCCTGATACACGTCTCCATGTTCTTTCTGATATAAGCAAATCCAAACGAGCGGTCCCGGCTTCGATAGAGTTTGTTGATATTGCTGGACTTGTAAAGGGAGCCAGTCAAGGGGAGGTTTATTCTCAATAACCTAAAGTTTCCTAATATCAATTATTAGTCATGTTTTCACTTATTGTATCATTGCATCAGTGGCATTATAAATTGAAGATACAACAATTTGTTAAATATTTTCTATGGCAGGGCCTGGGGAATAAGTTCTTGTCACATATACGTGAAGTGGACTCCATACTTCAGGTTTATATACTTTCTAGTTCCTTTATCATTGTTATCTGTAATCTTGTGTTACGTTGAAGTCCATGTTAGTTCCCAGCCCACTTCCATGGAAGTAATGATGAATCTATAGTCATTTGATCCTGATATAAAAACGAGAGAAAAATATTACATAAAATATAGATCTTGATGTATCCCTTTTTGGTAAGTTGTGAAGAAAAAGTACTCATTTCTAACTATTTTTTAAAAATAAGTTTTTTAATTTTTTAATATAAGTTTTTACATTAATTTTTTAAATAATAATTATAGTTTTTTTATGGTTTCCTTTCCTATTTAGATAGATATTTTTACATTCCATTTTGTTGGAGTATTCCCTAAAATCACTGAAAGTGTGATAAGTATAAAGAGACATTACAGTTTTTTTTATAAAATTATTCAATTTTCAGTTTTCATTTTTTAACCTTAAAAATTGAAATTTGAAGCATTTAAAGATCTTTCATTTTTTTTCATGTAATAGCCATTACTGTTTTTATAAAAAAAGATAGTTCAATTTCATTTTCCCCCTTAAAATTGAAATTAGAGGCATTTAAAAATCATCCATTTTTTGCCGTTACAATTTTTTTTAACAAAAAAACTCTTATTTTCTATTTAAAATAGCTATATTAAAATTCCTGTTTTTTTTAATTTTATTTTTAGAGCATATTTTGAAATGTTTTTTGAAAAATTAAAATTCTTGAATAATTGTGGTGCTGACATGTGACACTTTTTACTTCTCCTAATATATATTAGATAGATTTTTTTTTTAAAAAATAGGCAAACCCACATATTATACCCAGTAAAAAAATTACATTAAGAACTGTAATATGAGCTCCTCCGGTTCTTCAAGAAAATATGTGGGTTCCTCCGATTATTTAAAAGAATTAGAAAAATATTAATAACAAGTTAGAAAATATGACATGGCATCCCACTAAGAGAGAAATAATGTATTTTTTTGTGTCAAAGTTGGGTGATATTGTAGTCCTAAAACAAACACAAGTGATATTCCTAGATAATTTCTCTAACATGGGTGACTATCTAGGGAAATTACTCGATTTAATACTTCAATTGCATTTCAAATATGAAAATAATCATTCCAAGGCCTTTTTTTTCTCTTTTGAGTTGTAAGGCTTTATTTTGCTGTTATATTGCATCCTAGCTTATGAGCATGTAAAGACTAAAGAGAAGGAAGAGTGCCCCATCAGTTTGCTTTGAGTTCCTTACTGATTTAAAAAATTTTCTGTCATACATTTTCTGTTGTTGCTTGCTGAAAGTGCTTTTGTGTACTATTTTAGGTAGTACGTTGTTTTGAGGACAATGACATTGTTCATGTGAATGGGAAGGTTGAGCCAAAAGCTGATATTGATGTAATCAACTTGGAATTAATTTTCTCAGATTTGGATCAGGTACTTGTTACAGTTCTGCTTTACATTTACAGGATGCTAACATAAACTAGGGGTATAGCTCATGGAGATGTATGCAGATAAATGGAGAAAAAAGAGGACATAAGATGCTTTTTATTAAAATGGACTAAATACAGATTCGAATGCATGTGATGATGCTAGTATTGCACGAGAGGTGTATATGAATAATAGCTTTTTACGTACCTATGAAGCATGCATGACAGTCTCATGATGGTGTCAGAAAAATGCACACAAGACAAGGGATGTGGATGATATATTTTTTCTTTTTTTTTCAACAGTAATTTTGTAGTCTTTCTTCTCCTTGTAAAGTTTCTAGGTATGCGAACCAACTAATGACACTAAGTTTACAAGAATGCAGATTGAGAAAAGAATGGAGAAACTCAAAAAAGGTAGAGCTAAAGATTCACAAGCTAAAGTAAAGGTAACCTTATCTATTAGTTTCTGGGAGATTAAGTGAGTAGTTCATCCTTGCAAGGTTTTAAAATGTTGATTGTTGTATGATTGACATCCTCGTAGTTACATTACAAACGTTGTCGTTGGGGATGTCTATTTTAATATTATCGTTTCAGGAGGAAGCAGAAAAGTCTGCCTTGGAGAAAATACAACAAGCACTACTGGATGGAAAACCAGCACGATCAGTATCTTTGTCGGAGTTTGAAAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCTGAGTTAAATTCTGGTGTGGTAACTATTTCAGCGCAGGTCAGTTGACATCTTTCACTTTTCCCTTTTGTATTTGAATCAATCAAAATTCATGCTTATTTCATTTCAGGGGGAGATCTTTATCCTAATGCTCTATTGGAAATTACTTTAATTGTCATATCTAGTTGTGGTCCTCGATACAAGTCTAGAAACTCTCTTTGTTAAAGAAGGTGATACGAGTCTAGAAGCTCTTATGATAAAATAAATACCAGAAGGAAATTCGGGATGTGTGACATTGCCTTTCTATGAGAGAAGGGGTGAAAAGCATGAGCTGACCTTCATGGAAACCGGGACCTGTCAAGATCTCGTAACCATTTTAGGTAGAGGAGCTATTATTTACCAACTTGTTTTCTTTGCCATATGTATTTTTAACTTTTTCCACCTTTAGGGATTAGGAGTTATGATGTGCTAAAGTGAATCTAGCTTTCTACACGATAAAAAATCTCTGTGGAACAGAGGGTTGCTTCCAGTTGCTACATATTTCTGGTCTTCCTATTGCAGGTTGAGTCTGAGCTATCTGAACTTCCTTTAGAAGAAAGAATAGAATATTTGAAATCGCTTGGTGTCAATGAAAGTG</genome_strand>
        <mrna_strand>GGGATAGTCGCTGTCCCTGATACACGTCTCCATGTTCTTTCTGATATAAGCAAATCCAAACGAGCGGTCCCGGCTTCGATAGAGTTTGTTGATATTGCTGGACTTGTAAAGGGAGCCAGTCAAGGGGAG..............................................................................................................................GGCCTGGGGAATAAGTTCTTGTCACATATACGTGAAGTGGACTCCATACTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTACGTTGTTTTGAGGACAATGACATTGTTCATGTGAATGGGAAGGTTGAGCCAAAAGCTGATATTGATGTAATCAACTTGGAATTAATTTTCTCAGATTTGGATCAG........................................................................................................................................................................................................................................................................................................................................................................................ATTGAGAAAAGAATGGAGAAACTCAAAAAAGGTAGAGCTAAAGATTCACAAGCTAAAGTAAAG....................................................................................................................................................GAGGAAGCAGAAAAGTCTGCCTTGGAGAAAATACAACAAGCACTACTGGATGGAAAACCAGCACGATCAGTATCTTTGTCGGAGTTTGAAAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCTGAGTTAAATTCTGGTGTGGTAACTATTTCAGCGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTCTGAGCTATCTGAACTTCCTTTAGAAGAAAGAATAGAATATTTGAAATCGCTCGGTGTCAATGAAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E269681" ref_strand="+" ref_description="SGN-E269681 [cLEM-17-O7]">
      <seq>cctggggaataagttcttgtcacatatacgtgaagtggactccatacttcaggtagtacgttgttttgaggacaatgacattgttcatgtgaatgggaaggttgagccaaaagctgatattgatgtaatcaacttggaattaattttctcagatttggatcagattgagaaaagaatggagaaactcaaaaaaggtagagctaaagattcacaagctaaagtaaaggaggaagcagaaaagtctgccttggagaaaatacaacaagcactactggatggaaaaccagcacgatcagtatctttgtcggagtttgaaaaggatgctataacacaactttgtcttctaacaatgaagcctgtcatatttgtggcaaatgtagcggaatcagaggtagctgaacctgaaaataatcctcatgtgaaggaagtaattaaaaaagctgctgagttaaattctggtgtggtaactatttcagcgcaggttgagtctgagctatctgaacttcctttagaagaaagaatagaatatttgaaatcgcttggtgtcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="35974" stop="32492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35674" g_stop="35623" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35622" i_stop="34316" i_length="1307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34315" g_stop="34205" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="163" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34204" i_stop="33829" i_length="376">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33828" g_stop="33766" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="226" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33765" i_stop="33618" i_length="148">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33617" g_stop="33363" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="481" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33362" i_stop="32862" i_length="501">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32861" g_stop="32792" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="551" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E269681" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35674" e_stop="35623"/>
          <exon e_start="34315" e_stop="34205"/>
          <exon e_start="33828" e_stop="33766"/>
          <exon e_start="33617" e_stop="33363"/>
          <exon e_start="32861" e_stop="32792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGGGGAATAAGTTCTTGTCACATATACGTGAAGTGGACTCCATACTTCAGGTTTATATACTTTCTAGTTCCTTTATCATTGTTATCTGTAATCTTGTGTTACGTTGAAGTCCATGTTAGTTCCCAGCCCACTTCCATGGAAGTAATGATGAATCTATAGTCATTTGATCCTGATATAAAAACGAGAGAAAAATATTACATAAAATATAGATCTTGATGTATCCCTTTTTGGTAAGTTGTGAAGAAAAAGTACTCATTTCTAACTATTTTTTAAAAATAAGTTTTTTAATTTTTTAATATAAGTTTTTACATTAATTTTTTAAATAATAATTATAGTTTTTTTATGGTTTCCTTTCCTATTTAGATAGATATTTTTACATTCCATTTTGTTGGAGTATTCCCTAAAATCACTGAAAGTGTGATAAGTATAAAGAGACATTACAGTTTTTTTTATAAAATTATTCAATTTTCAGTTTTCATTTTTTAACCTTAAAAATTGAAATTTGAAGCATTTAAAGATCTTTCATTTTTTTTCATGTAATAGCCATTACTGTTTTTATAAAAAAAGATAGTTCAATTTCATTTTCCCCCTTAAAATTGAAATTAGAGGCATTTAAAAATCATCCATTTTTTGCCGTTACAATTTTTTTTAACAAAAAAACTCTTATTTTCTATTTAAAATAGCTATATTAAAATTCCTGTTTTTTTTAATTTTATTTTTAGAGCATATTTTGAAATGTTTTTTGAAAAATTAAAATTCTTGAATAATTGTGGTGCTGACATGTGACACTTTTTACTTCTCCTAATATATATTAGATAGATTTTTTTTTTAAAAAATAGGCAAACCCACATATTATACCCAGTAAAAAAATTACATTAAGAACTGTAATATGAGCTCCTCCGGTTCTTCAAGAAAATATGTGGGTTCCTCCGATTATTTAAAAGAATTAGAAAAATATTAATAACAAGTTAGAAAATATGACATGGCATCCCACTAAGAGAGAAATAATGTATTTTTTTGTGTCAAAGTTGGGTGATATTGTAGTCCTAAAACAAACACAAGTGATATTCCTAGATAATTTCTCTAACATGGGTGACTATCTAGGGAAATTACTCGATTTAATACTTCAATTGCATTTCAAATATGAAAATAATCATTCCAAGGCCTTTTTTTTCTCTTTTGAGTTGTAAGGCTTTATTTTGCTGTTATATTGCATCCTAGCTTATGAGCATGTAAAGACTAAAGAGAAGGAAGAGTGCCCCATCAGTTTGCTTTGAGTTCCTTACTGATTTAAAAAATTTTCTGTCATACATTTTCTGTTGTTGCTTGCTGAAAGTGCTTTTGTGTACTATTTTAGGTAGTACGTTGTTTTGAGGACAATGACATTGTTCATGTGAATGGGAAGGTTGAGCCAAAAGCTGATATTGATGTAATCAACTTGGAATTAATTTTCTCAGATTTGGATCAGGTACTTGTTACAGTTCTGCTTTACATTTACAGGATGCTAACATAAACTAGGGGTATAGCTCATGGAGATGTATGCAGATAAATGGAGAAAAAAGAGGACATAAGATGCTTTTTATTAAAATGGACTAAATACAGATTCGAATGCATGTGATGATGCTAGTATTGCACGAGAGGTGTATATGAATAATAGCTTTTTACGTACCTATGAAGCATGCATGACAGTCTCATGATGGTGTCAGAAAAATGCACACAAGACAAGGGATGTGGATGATATATTTTTTCTTTTTTTTTCAACAGTAATTTTGTAGTCTTTCTTCTCCTTGTAAAGTTTCTAGGTATGCGAACCAACTAATGACACTAAGTTTACAAGAATGCAGATTGAGAAAAGAATGGAGAAACTCAAAAAAGGTAGAGCTAAAGATTCACAAGCTAAAGTAAAGGTAACCTTATCTATTAGTTTCTGGGAGATTAAGTGAGTAGTTCATCCTTGCAAGGTTTTAAAATGTTGATTGTTGTATGATTGACATCCTCGTAGTTACATTACAAACGTTGTCGTTGGGGATGTCTATTTTAATATTATCGTTTCAGGAGGAAGCAGAAAAGTCTGCCTTGGAGAAAATACAACAAGCACTACTGGATGGAAAACCAGCACGATCAGTATCTTTGTCGGAGTTTGAAAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCTGAGTTAAATTCTGGTGTGGTAACTATTTCAGCGCAGGTCAGTTGACATCTTTCACTTTTCCCTTTTGTATTTGAATCAATCAAAATTCATGCTTATTTCATTTCAGGGGGAGATCTTTATCCTAATGCTCTATTGGAAATTACTTTAATTGTCATATCTAGTTGTGGTCCTCGATACAAGTCTAGAAACTCTCTTTGTTAAAGAAGGTGATACGAGTCTAGAAGCTCTTATGATAAAATAAATACCAGAAGGAAATTCGGGATGTGTGACATTGCCTTTCTATGAGAGAAGGGGTGAAAAGCATGAGCTGACCTTCATGGAAACCGGGACCTGTCAAGATCTCGTAACCATTTTAGGTAGAGGAGCTATTATTTACCAACTTGTTTTCTTTGCCATATGTATTTTTAACTTTTTCCACCTTTAGGGATTAGGAGTTATGATGTGCTAAAGTGAATCTAGCTTTCTACACGATAAAAAATCTCTGTGGAACAGAGGGTTGCTTCCAGTTGCTACATATTTCTGGTCTTCCTATTGCAGGTTGAGTCTGAGCTATCTGAACTTCCTTTAGAAGAAAGAATAGAATATTTGAAATCGCTTGGTGTCAATG</genome_strand>
        <mrna_strand>CCTGGGGAATAAGTTCTTGTCACATATACGTGAAGTGGACTCCATACTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTACGTTGTTTTGAGGACAATGACATTGTTCATGTGAATGGGAAGGTTGAGCCAAAAGCTGATATTGATGTAATCAACTTGGAATTAATTTTCTCAGATTTGGATCAG........................................................................................................................................................................................................................................................................................................................................................................................ATTGAGAAAAGAATGGAGAAACTCAAAAAAGGTAGAGCTAAAGATTCACAAGCTAAAGTAAAG....................................................................................................................................................GAGGAAGCAGAAAAGTCTGCCTTGGAGAAAATACAACAAGCACTACTGGATGGAAAACCAGCACGATCAGTATCTTTGTCGGAGTTTGAAAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCTGAGTTAAATTCTGGTGTGGTAACTATTTCAGCGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTCTGAGCTATCTGAACTTCCTTTAGAAGAAAGAATAGAATATTTGAAATCGCTTGGTGTCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E340487" ref_strand="+" ref_description="SGN-E340487 [cTOF-1-F19]">
      <seq>tcaataacctaaagtttcctaatatcaattattagtcatgttttcacttattgtatcattgcatcagtggcattataaattgaagatacaacaatttgttaaatattttctatggcagggcctggggaataagttcttgtcacatatacgtgaagtggactccatacttcaggtagtacgttgttttgaggacaatgacattgttcatgtgaatgggaaggttgagccaaaagctgatattgatgtaatcaacttggaattaattttctcagatttggatcagattgagaaaagaatggagaaactcaaaaaaggtagagctaaagattcacaagctaaagtaaaggaggaagcagaaaagtctgccttggagaaaatacaacaagcactactggatggaaaaccagcacgatcagtatctttgtcggagtttgaaaaggatgctataacacaactttgtcttctaacaatgaagcctgtcatatttgtggcaaatgtagcggaatcagaggtagctgaacctgaaaataatcctcatgtgaaggaagtaattaaaaaagctgctgagttaaattctggtgtggtaactatttcagcgcaggtcagttgacatctttcacttttcccttttgtatttgaatcaatcaaaattcatgcttatttcatttcggggggagatctttatcctaatgctctattggaaattactttaattgtcatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="36094" stop="32941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35794" g_stop="35623" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35622" i_stop="34316" i_length="1307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34315" g_stop="34205" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="283" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34204" i_stop="33829" i_length="376">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33828" g_stop="33766" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="346" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33765" i_stop="33618" i_length="148">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33617" g_stop="33241" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="723" r_length="377" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E340487" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35794" e_stop="35623"/>
          <exon e_start="34315" e_stop="34205"/>
          <exon e_start="33828" e_stop="33766"/>
          <exon e_start="33617" e_stop="33241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATAACCTAAAGTTTCCTAATATCAATTATTAGTCATGTTTTCACTTATTGTATCATTGCATCAGTGGCATTATAAATTGAAGATACAACAATTTGTTAAATATTTTCTATGGCAGGGCCTGGGGAATAAGTTCTTGTCACATATACGTGAAGTGGACTCCATACTTCAGGTTTATATACTTTCTAGTTCCTTTATCATTGTTATCTGTAATCTTGTGTTACGTTGAAGTCCATGTTAGTTCCCAGCCCACTTCCATGGAAGTAATGATGAATCTATAGTCATTTGATCCTGATATAAAAACGAGAGAAAAATATTACATAAAATATAGATCTTGATGTATCCCTTTTTGGTAAGTTGTGAAGAAAAAGTACTCATTTCTAACTATTTTTTAAAAATAAGTTTTTTAATTTTTTAATATAAGTTTTTACATTAATTTTTTAAATAATAATTATAGTTTTTTTATGGTTTCCTTTCCTATTTAGATAGATATTTTTACATTCCATTTTGTTGGAGTATTCCCTAAAATCACTGAAAGTGTGATAAGTATAAAGAGACATTACAGTTTTTTTTATAAAATTATTCAATTTTCAGTTTTCATTTTTTAACCTTAAAAATTGAAATTTGAAGCATTTAAAGATCTTTCATTTTTTTTCATGTAATAGCCATTACTGTTTTTATAAAAAAAGATAGTTCAATTTCATTTTCCCCCTTAAAATTGAAATTAGAGGCATTTAAAAATCATCCATTTTTTGCCGTTACAATTTTTTTTAACAAAAAAACTCTTATTTTCTATTTAAAATAGCTATATTAAAATTCCTGTTTTTTTTAATTTTATTTTTAGAGCATATTTTGAAATGTTTTTTGAAAAATTAAAATTCTTGAATAATTGTGGTGCTGACATGTGACACTTTTTACTTCTCCTAATATATATTAGATAGATTTTTTTTTTAAAAAATAGGCAAACCCACATATTATACCCAGTAAAAAAATTACATTAAGAACTGTAATATGAGCTCCTCCGGTTCTTCAAGAAAATATGTGGGTTCCTCCGATTATTTAAAAGAATTAGAAAAATATTAATAACAAGTTAGAAAATATGACATGGCATCCCACTAAGAGAGAAATAATGTATTTTTTTGTGTCAAAGTTGGGTGATATTGTAGTCCTAAAACAAACACAAGTGATATTCCTAGATAATTTCTCTAACATGGGTGACTATCTAGGGAAATTACTCGATTTAATACTTCAATTGCATTTCAAATATGAAAATAATCATTCCAAGGCCTTTTTTTTCTCTTTTGAGTTGTAAGGCTTTATTTTGCTGTTATATTGCATCCTAGCTTATGAGCATGTAAAGACTAAAGAGAAGGAAGAGTGCCCCATCAGTTTGCTTTGAGTTCCTTACTGATTTAAAAAATTTTCTGTCATACATTTTCTGTTGTTGCTTGCTGAAAGTGCTTTTGTGTACTATTTTAGGTAGTACGTTGTTTTGAGGACAATGACATTGTTCATGTGAATGGGAAGGTTGAGCCAAAAGCTGATATTGATGTAATCAACTTGGAATTAATTTTCTCAGATTTGGATCAGGTACTTGTTACAGTTCTGCTTTACATTTACAGGATGCTAACATAAACTAGGGGTATAGCTCATGGAGATGTATGCAGATAAATGGAGAAAAAAGAGGACATAAGATGCTTTTTATTAAAATGGACTAAATACAGATTCGAATGCATGTGATGATGCTAGTATTGCACGAGAGGTGTATATGAATAATAGCTTTTTACGTACCTATGAAGCATGCATGACAGTCTCATGATGGTGTCAGAAAAATGCACACAAGACAAGGGATGTGGATGATATATTTTTTCTTTTTTTTTCAACAGTAATTTTGTAGTCTTTCTTCTCCTTGTAAAGTTTCTAGGTATGCGAACCAACTAATGACACTAAGTTTACAAGAATGCAGATTGAGAAAAGAATGGAGAAACTCAAAAAAGGTAGAGCTAAAGATTCACAAGCTAAAGTAAAGGTAACCTTATCTATTAGTTTCTGGGAGATTAAGTGAGTAGTTCATCCTTGCAAGGTTTTAAAATGTTGATTGTTGTATGATTGACATCCTCGTAGTTACATTACAAACGTTGTCGTTGGGGATGTCTATTTTAATATTATCGTTTCAGGAGGAAGCAGAAAAGTCTGCCTTGGAGAAAATACAACAAGCACTACTGGATGGAAAACCAGCACGATCAGTATCTTTGTCGGAGTTTGAAAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCTGAGTTAAATTCTGGTGTGGTAACTATTTCAGCGCAGGTCAGTTGACATCTTTCACTTTTCCCTTTTGTATTTGAATCAATCAAAATTCATGCTTATTTCATTTCAGGGGGAGATCTTTATCCTAATGCTCTATTGGAAATTACTTTAATTGTCATATC</genome_strand>
        <mrna_strand>TCAATAACCTAAAGTTTCCTAATATCAATTATTAGTCATGTTTTCACTTATTGTATCATTGCATCAGTGGCATTATAAATTGAAGATACAACAATTTGTTAAATATTTTCTATGGCAGGGCCTGGGGAATAAGTTCTTGTCACATATACGTGAAGTGGACTCCATACTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTACGTTGTTTTGAGGACAATGACATTGTTCATGTGAATGGGAAGGTTGAGCCAAAAGCTGATATTGATGTAATCAACTTGGAATTAATTTTCTCAGATTTGGATCAG........................................................................................................................................................................................................................................................................................................................................................................................ATTGAGAAAAGAATGGAGAAACTCAAAAAAGGTAGAGCTAAAGATTCACAAGCTAAAGTAAAG....................................................................................................................................................GAGGAAGCAGAAAAGTCTGCCTTGGAGAAAATACAACAAGCACTACTGGATGGAAAACCAGCACGATCAGTATCTTTGTCGGAGTTTGAAAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCTGAGTTAAATTCTGGTGTGGTAACTATTTCAGCGCAGGTCAGTTGACATCTTTCACTTTTCCCTTTTGTATTTGAATCAATCAAAATTCATGCTTATTTCATTTCGGGGGGAGATCTTTATCCTAATGCTCTATTGGAAATTACTTTAATTGTCATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E728549" ref_strand="+" ref_description="SGN-E728549 [LA18AG04]">
      <seq>acttcaacttgctagtggtaaaatggcgagaatggcttgctctcagcttcttccttccatggcaattccgctcaagtcttctttcctcaatggttcttctcaccagtggttacgactctcagaatctacgcatcctgtggtactcatcaaaaggcgcttctccgtcgctaagataagcatgagtttgcgagctggcatcgttggccttcctaatgtcggcaagtccacgctgttcaacgccgtcgttgagaatggaaaggctcaggctgctaattttcctttttgcacaatagagccaaatgtagggatagtcgctgtccctgatacacgtctccatgttctttctgatataagcaaatccaaacgagcggtcccggcttcgatagagtttgttgatattgctggacttgtaaagggagccagtcaaggggagggcctggggaataagttcttgtcacatatacgtgaagtggactccatacttcaggtagtacgttgttttgaggacaatgacattgttcatgtgaatgggaaggttgagccaaaagctgatattgatgtaatcaacttggaattaattttctcagatttggatcagattgagaaaagaatggagaaactcaaaaaaggtagagctaaagattcacaagctaaagtaaaggaggaagcagaaaagtctgccttggagaaaatacaacaagcactactggatggaaaaccagcacgatcagtatctttgtcggagtttgaaaaggatgctataacacaactttgtcttctaacaatgaagcctgtcatatttgtggcaaatgtagcggaatcagaggtagctgaacctgaaaataatcctcatgtgaaggaagtaattaaaaagctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="37520" stop="33099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37220" g_stop="36977" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36976" i_stop="35992" i_length="985">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35991" g_stop="35803" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="433" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35802" i_stop="35677" i_length="126">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35676" g_stop="35623" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="487" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35622" i_stop="34316" i_length="1307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34315" g_stop="34205" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="598" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34204" i_stop="33829" i_length="376">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33828" g_stop="33766" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="661" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33765" i_stop="33618" i_length="148">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33617" g_stop="33399" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="879" r_length="218" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E728549" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>880</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37220" e_stop="36977"/>
          <exon e_start="35991" e_stop="35803"/>
          <exon e_start="35676" e_stop="35623"/>
          <exon e_start="34315" e_stop="34205"/>
          <exon e_start="33828" e_stop="33766"/>
          <exon e_start="33617" e_stop="33399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCAACTTGCTAGTGGTAAAATGGCGAGAATGGCTTGCTCTCAGCTTCTTCCTTCCATGGCAATTCCGCTCAAGTCTTCTTTCCTCAATGGTTCTTCTCACCAGTGGTTACGACTCTCAGAATCTACGCATCCTGTGGTACTCATCAAAAGGCGCTTCTCCGTCGCTAAGATAAGCATGAGTTTGCGAGCTGGCATCGTTGGCCTTCCTAATGTCGGCAAGTCCACGCTGTTCAACGCCGTCGTAAGTCTATTTTCACAATATATTTTCTTCTGCAAAGACGCAATTGAATGCTTACCCCATATATTTGTAGAAATGCCGATAGTCTTGCAATTGAAGCTCAGAAAATGGACGTGGAAGCTTAATAATTTAACTACAAGTATGAGTGTGTAGTGAGTTAGATGTTTACTGGAGTGTAAGTATAGTTACTGGTCCTTCTGTCAGAAGGAATTGAAGGTAGATGCTGTTAATTTAAAATTGGATAGCTCTTAAACTGGAAAAGCACAACCCGTAGGAAACTAATGGAAAATTGATGTTGCATATTTTTTTAGATGCTTTTCGAGAGCCGAATTGTTGTACATCTCTTTGATAAATGCATAGTGCATATCTGTATGGAGGATGTTATTCACTAGTTAAAGAGACTGTAACTGAGGTTTTGAGTTGATGAACGTGTTACTAGTAATACATGCCGGGGCAAACCATAATTTCCTTGGGAGGTTGATTTTGTGTAATTCCTAGATGCTTCTCCAATATCCAATATTATGCATACTACATCTATATGAATGATGTTATTAGTTCTACATGTTGGGGAAAAGAAATCATAAAAAATCGTATTACTGAATAATTTGTGTGTTCAGTGCAAGTGTAAACCAGAAAAATGGTAATTGTTGTGCTTCTTCTTGTTATGGTTGTCGATGTAGATCACCACTGTATCTTAAACTTCAGGTATCTTTGAAACCCTCTAGCATTAACTGACAGAATGGGTTACGTGTTCAACAGTTTTGAAGTTTTTGTTTGCTAGCAGGTGTCAGCTACATATGTACTATTAATCTGTTACTATGGTCCATTCTCCATGTATTCCAGTCTAAAAGGCTAAAAAATGGTAGCATATGCTGGAAACTTGACATTGTATTGTTGTAGTTTGCTGTCAAATAACTCCTTTGATTATTCTGCTTGTATGTTTGCTGTTGGTCACATGCCCTTATAGCCATTGCCAATATTCTTGCAGGTTGAGAATGGAAAGGCTCAGGCTGCTAATTTTCCTTTTTGCACAATAGAGCCAAATGTAGGGATAGTCGCTGTCCCTGATACACGTCTCCATGTTCTTTCTGATATAAGCAAATCCAAACGAGCGGTCCCGGCTTCGATAGAGTTTGTTGATATTGCTGGACTTGTAAAGGGAGCCAGTCAAGGGGAGGTTTATTCTCAATAACCTAAAGTTTCCTAATATCAATTATTAGTCATGTTTTCACTTATTGTATCATTGCATCAGTGGCATTATAAATTGAAGATACAACAATTTGTTAAATATTTTCTATGGCAGGGCCTGGGGAATAAGTTCTTGTCACATATACGTGAAGTGGACTCCATACTTCAGGTTTATATACTTTCTAGTTCCTTTATCATTGTTATCTGTAATCTTGTGTTACGTTGAAGTCCATGTTAGTTCCCAGCCCACTTCCATGGAAGTAATGATGAATCTATAGTCATTTGATCCTGATATAAAAACGAGAGAAAAATATTACATAAAATATAGATCTTGATGTATCCCTTTTTGGTAAGTTGTGAAGAAAAAGTACTCATTTCTAACTATTTTTTAAAAATAAGTTTTTTAATTTTTTAATATAAGTTTTTACATTAATTTTTTAAATAATAATTATAGTTTTTTTATGGTTTCCTTTCCTATTTAGATAGATATTTTTACATTCCATTTTGTTGGAGTATTCCCTAAAATCACTGAAAGTGTGATAAGTATAAAGAGACATTACAGTTTTTTTTATAAAATTATTCAATTTTCAGTTTTCATTTTTTAACCTTAAAAATTGAAATTTGAAGCATTTAAAGATCTTTCATTTTTTTTCATGTAATAGCCATTACTGTTTTTATAAAAAAAGATAGTTCAATTTCATTTTCCCCCTTAAAATTGAAATTAGAGGCATTTAAAAATCATCCATTTTTTGCCGTTACAATTTTTTTTAACAAAAAAACTCTTATTTTCTATTTAAAATAGCTATATTAAAATTCCTGTTTTTTTTAATTTTATTTTTAGAGCATATTTTGAAATGTTTTTTGAAAAATTAAAATTCTTGAATAATTGTGGTGCTGACATGTGACACTTTTTACTTCTCCTAATATATATTAGATAGATTTTTTTTTTAAAAAATAGGCAAACCCACATATTATACCCAGTAAAAAAATTACATTAAGAACTGTAATATGAGCTCCTCCGGTTCTTCAAGAAAATATGTGGGTTCCTCCGATTATTTAAAAGAATTAGAAAAATATTAATAACAAGTTAGAAAATATGACATGGCATCCCACTAAGAGAGAAATAATGTATTTTTTTGTGTCAAAGTTGGGTGATATTGTAGTCCTAAAACAAACACAAGTGATATTCCTAGATAATTTCTCTAACATGGGTGACTATCTAGGGAAATTACTCGATTTAATACTTCAATTGCATTTCAAATATGAAAATAATCATTCCAAGGCCTTTTTTTTCTCTTTTGAGTTGTAAGGCTTTATTTTGCTGTTATATTGCATCCTAGCTTATGAGCATGTAAAGACTAAAGAGAAGGAAGAGTGCCCCATCAGTTTGCTTTGAGTTCCTTACTGATTTAAAAAATTTTCTGTCATACATTTTCTGTTGTTGCTTGCTGAAAGTGCTTTTGTGTACTATTTTAGGTAGTACGTTGTTTTGAGGACAATGACATTGTTCATGTGAATGGGAAGGTTGAGCCAAAAGCTGATATTGATGTAATCAACTTGGAATTAATTTTCTCAGATTTGGATCAGGTACTTGTTACAGTTCTGCTTTACATTTACAGGATGCTAACATAAACTAGGGGTATAGCTCATGGAGATGTATGCAGATAAATGGAGAAAAAAGAGGACATAAGATGCTTTTTATTAAAATGGACTAAATACAGATTCGAATGCATGTGATGATGCTAGTATTGCACGAGAGGTGTATATGAATAATAGCTTTTTACGTACCTATGAAGCATGCATGACAGTCTCATGATGGTGTCAGAAAAATGCACACAAGACAAGGGATGTGGATGATATATTTTTTCTTTTTTTTTCAACAGTAATTTTGTAGTCTTTCTTCTCCTTGTAAAGTTTCTAGGTATGCGAACCAACTAATGACACTAAGTTTACAAGAATGCAGATTGAGAAAAGAATGGAGAAACTCAAAAAAGGTAGAGCTAAAGATTCACAAGCTAAAGTAAAGGTAACCTTATCTATTAGTTTCTGGGAGATTAAGTGAGTAGTTCATCCTTGCAAGGTTTTAAAATGTTGATTGTTGTATGATTGACATCCTCGTAGTTACATTACAAACGTTGTCGTTGGGGATGTCTATTTTAATATTATCGTTTCAGGAGGAAGCAGAAAAGTCTGCCTTGGAGAAAATACAACAAGCACTACTGGATGGAAAACCAGCACGATCAGTATCTTTGTCGGAGTTTGAAAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCT</genome_strand>
        <mrna_strand>ACTTCAACTTGCTAGTGGTAAAATGGCGAGAATGGCTTGCTCTCAGCTTCTTCCTTCCATGGCAATTCCGCTCAAGTCTTCTTTCCTCAATGGTTCTTCTCACCAGTGGTTACGACTCTCAGAATCTACGCATCCTGTGGTACTCATCAAAAGGCGCTTCTCCGTCGCTAAGATAAGCATGAGTTTGCGAGCTGGCATCGTTGGCCTTCCTAATGTCGGCAAGTCCACGCTGTTCAACGCCGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGAATGGAAAGGCTCAGGCTGCTAATTTTCCTTTTTGCACAATAGAGCCAAATGTAGGGATAGTCGCTGTCCCTGATACACGTCTCCATGTTCTTTCTGATATAAGCAAATCCAAACGAGCGGTCCCGGCTTCGATAGAGTTTGTTGATATTGCTGGACTTGTAAAGGGAGCCAGTCAAGGGGAG..............................................................................................................................GGCCTGGGGAATAAGTTCTTGTCACATATACGTGAAGTGGACTCCATACTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTACGTTGTTTTGAGGACAATGACATTGTTCATGTGAATGGGAAGGTTGAGCCAAAAGCTGATATTGATGTAATCAACTTGGAATTAATTTTCTCAGATTTGGATCAG........................................................................................................................................................................................................................................................................................................................................................................................ATTGAGAAAAGAATGGAGAAACTCAAAAAAGGTAGAGCTAAAGATTCACAAGCTAAAGTAAAG....................................................................................................................................................GAGGAAGCAGAAAAGTCTGCCTTGGAGAAAATACAACAAGCACTACTGGATGGAAAACCAGCACGATCAGTATCTTTGTCGGAGTTTGAAAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATT-AAAAAGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E728529" ref_strand="+" ref_description="SGN-E728529 [LA18AE02]">
      <seq>gacagatatttgtagttgaagcacggcgatacataacagcaacgctgtgtgtaccactcaataatcacttcaaattgctagtggtaaaatggcgagaatggcttgcactcatcttcttccttccatggcaattccgctcaagtcttcttacctcaatggatcttctcaccagtggttacgactctcacaatctactcatcctgtggtactcatcaaaaggcacttctccgtcgctagaataaccatgagtttgcgagctggcatcctaggccttcctaatgtccgcaactccacactgctcaacgccgtctttgagaatggaaaggctcaggctgctaattttcctttttgcacaatacagccaaatgtaaggatagtcgctgtccctgatacacgtctccatgttctttctgatataagcaaatccaaacgagcggtcccggcttcgatagagtttgttgatattgctggacttgtaaaggaagccagtcaaggggagggcctggggaataagttcttgtcacatatacgtgaagtggactccatacttcaagtagtacgttgttttgacgaccatgactttgttcatgtgaatgggaaggttgagccaaaagctgatattgatgtaatcaacttggaattaattttctcagatttggatcagattgagaaaagaatggagaaactcaaaaaaggtagagctaaagattcacaagctaaagtaaaggaggaagcagaaaagtctgccttggagaaaatacaacaagcactactggatggaaaaccagcacgatcagtatctttgtcggagtttgaaaagatgctataacacaactttgtcttctaacaatgaagcctgtcatatttgtggcaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="37586" stop="33166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37286" g_stop="36977" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36976" i_stop="35992" i_length="985">
            <donor d_prob="0.994" d_score="0.88"/>
            <acceptor a_prob="0.914" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35991" g_stop="35803" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="499" r_length="189" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35802" i_stop="35677" i_length="126">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35676" g_stop="35623" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="553" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35622" i_stop="34316" i_length="1307">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34315" g_stop="34205" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="664" r_length="111" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34204" i_stop="33829" i_length="376">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33828" g_stop="33766" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="727" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33765" i_stop="33618" i_length="148">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33617" g_stop="33466" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="728" r_stop="877" r_length="150" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E728529" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>879</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37286" e_stop="36977"/>
          <exon e_start="35991" e_stop="35803"/>
          <exon e_start="35676" e_stop="35623"/>
          <exon e_start="34315" e_stop="34205"/>
          <exon e_start="33828" e_stop="33766"/>
          <exon e_start="33617" e_stop="33466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAATATTTGTAGTTGTAGCACGGCGATAGATAGCCGCAACGCTGTGTGTACCACTCAATAAGCACTTCAACTTGCTAGTGGTAAAATGGCGAGAATGGCTTGCTCTCAGCTTCTTCCTTCCATGGCAATTCCGCTCAAGTCTTCTTTCCTCAATGGTTCTTCTCACCAGTGGTTACGACTCTCAGAATCTACGCATCCTGTGGTACTCATCAAAAGGCGCTTCTCCGTCGCTAAGATAAGCATGAGTTTGCGAGCTGGCATCGTTGGCCTTCCTAATGTCGGCAAGTCCACGCTGTTCAACGCCGTCGTAAGTCTATTTTCACAATATATTTTCTTCTGCAAAGACGCAATTGAATGCTTACCCCATATATTTGTAGAAATGCCGATAGTCTTGCAATTGAAGCTCAGAAAATGGACGTGGAAGCTTAATAATTTAACTACAAGTATGAGTGTGTAGTGAGTTAGATGTTTACTGGAGTGTAAGTATAGTTACTGGTCCTTCTGTCAGAAGGAATTGAAGGTAGATGCTGTTAATTTAAAATTGGATAGCTCTTAAACTGGAAAAGCACAACCCGTAGGAAACTAATGGAAAATTGATGTTGCATATTTTTTTAGATGCTTTTCGAGAGCCGAATTGTTGTACATCTCTTTGATAAATGCATAGTGCATATCTGTATGGAGGATGTTATTCACTAGTTAAAGAGACTGTAACTGAGGTTTTGAGTTGATGAACGTGTTACTAGTAATACATGCCGGGGCAAACCATAATTTCCTTGGGAGGTTGATTTTGTGTAATTCCTAGATGCTTCTCCAATATCCAATATTATGCATACTACATCTATATGAATGATGTTATTAGTTCTACATGTTGGGGAAAAGAAATCATAAAAAATCGTATTACTGAATAATTTGTGTGTTCAGTGCAAGTGTAAACCAGAAAAATGGTAATTGTTGTGCTTCTTCTTGTTATGGTTGTCGATGTAGATCACCACTGTATCTTAAACTTCAGGTATCTTTGAAACCCTCTAGCATTAACTGACAGAATGGGTTACGTGTTCAACAGTTTTGAAGTTTTTGTTTGCTAGCAGGTGTCAGCTACATATGTACTATTAATCTGTTACTATGGTCCATTCTCCATGTATTCCAGTCTAAAAGGCTAAAAAATGGTAGCATATGCTGGAAACTTGACATTGTATTGTTGTAGTTTGCTGTCAAATAACTCCTTTGATTATTCTGCTTGTATGTTTGCTGTTGGTCACATGCCCTTATAGCCATTGCCAATATTCTTGCAGGTTGAGAATGGAAAGGCTCAGGCTGCTAATTTTCCTTTTTGCACAATAGAGCCAAATGTAGGGATAGTCGCTGTCCCTGATACACGTCTCCATGTTCTTTCTGATATAAGCAAATCCAAACGAGCGGTCCCGGCTTCGATAGAGTTTGTTGATATTGCTGGACTTGTAAAGGGAGCCAGTCAAGGGGAGGTTTATTCTCAATAACCTAAAGTTTCCTAATATCAATTATTAGTCATGTTTTCACTTATTGTATCATTGCATCAGTGGCATTATAAATTGAAGATACAACAATTTGTTAAATATTTTCTATGGCAGGGCCTGGGGAATAAGTTCTTGTCACATATACGTGAAGTGGACTCCATACTTCAGGTTTATATACTTTCTAGTTCCTTTATCATTGTTATCTGTAATCTTGTGTTACGTTGAAGTCCATGTTAGTTCCCAGCCCACTTCCATGGAAGTAATGATGAATCTATAGTCATTTGATCCTGATATAAAAACGAGAGAAAAATATTACATAAAATATAGATCTTGATGTATCCCTTTTTGGTAAGTTGTGAAGAAAAAGTACTCATTTCTAACTATTTTTTAAAAATAAGTTTTTTAATTTTTTAATATAAGTTTTTACATTAATTTTTTAAATAATAATTATAGTTTTTTTATGGTTTCCTTTCCTATTTAGATAGATATTTTTACATTCCATTTTGTTGGAGTATTCCCTAAAATCACTGAAAGTGTGATAAGTATAAAGAGACATTACAGTTTTTTTTATAAAATTATTCAATTTTCAGTTTTCATTTTTTAACCTTAAAAATTGAAATTTGAAGCATTTAAAGATCTTTCATTTTTTTTCATGTAATAGCCATTACTGTTTTTATAAAAAAAGATAGTTCAATTTCATTTTCCCCCTTAAAATTGAAATTAGAGGCATTTAAAAATCATCCATTTTTTGCCGTTACAATTTTTTTTAACAAAAAAACTCTTATTTTCTATTTAAAATAGCTATATTAAAATTCCTGTTTTTTTTAATTTTATTTTTAGAGCATATTTTGAAATGTTTTTTGAAAAATTAAAATTCTTGAATAATTGTGGTGCTGACATGTGACACTTTTTACTTCTCCTAATATATATTAGATAGATTTTTTTTTTAAAAAATAGGCAAACCCACATATTATACCCAGTAAAAAAATTACATTAAGAACTGTAATATGAGCTCCTCCGGTTCTTCAAGAAAATATGTGGGTTCCTCCGATTATTTAAAAGAATTAGAAAAATATTAATAACAAGTTAGAAAATATGACATGGCATCCCACTAAGAGAGAAATAATGTATTTTTTTGTGTCAAAGTTGGGTGATATTGTAGTCCTAAAACAAACACAAGTGATATTCCTAGATAATTTCTCTAACATGGGTGACTATCTAGGGAAATTACTCGATTTAATACTTCAATTGCATTTCAAATATGAAAATAATCATTCCAAGGCCTTTTTTTTCTCTTTTGAGTTGTAAGGCTTTATTTTGCTGTTATATTGCATCCTAGCTTATGAGCATGTAAAGACTAAAGAGAAGGAAGAGTGCCCCATCAGTTTGCTTTGAGTTCCTTACTGATTTAAAAAATTTTCTGTCATACATTTTCTGTTGTTGCTTGCTGAAAGTGCTTTTGTGTACTATTTTAGGTAGTACGTTGTTTTGAGGACAATGACATTGTTCATGTGAATGGGAAGGTTGAGCCAAAAGCTGATATTGATGTAATCAACTTGGAATTAATTTTCTCAGATTTGGATCAGGTACTTGTTACAGTTCTGCTTTACATTTACAGGATGCTAACATAAACTAGGGGTATAGCTCATGGAGATGTATGCAGATAAATGGAGAAAAAAGAGGACATAAGATGCTTTTTATTAAAATGGACTAAATACAGATTCGAATGCATGTGATGATGCTAGTATTGCACGAGAGGTGTATATGAATAATAGCTTTTTACGTACCTATGAAGCATGCATGACAGTCTCATGATGGTGTCAGAAAAATGCACACAAGACAAGGGATGTGGATGATATATTTTTTCTTTTTTTTTCAACAGTAATTTTGTAGTCTTTCTTCTCCTTGTAAAGTTTCTAGGTATGCGAACCAACTAATGACACTAAGTTTACAAGAATGCAGATTGAGAAAAGAATGGAGAAACTCAAAAAAGGTAGAGCTAAAGATTCACAAGCTAAAGTAAAGGTAACCTTATCTATTAGTTTCTGGGAGATTAAGTGAGTAGTTCATCCTTGCAAGGTTTTAAAATGTTGATTGTTGTATGATTGACATCCTCGTAGTTACATTACAAACGTTGTCGTTGGGGATGTCTATTTTAATATTATCGTTTCAGGAGGAAGCAGAAAAGTCTGCCTTGGAGAAAATACAACAAGCACTACTGGATGGAAAACCAGCACGATCAGTATCTTTGTCGGAGTTTGAAAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGT</genome_strand>
        <mrna_strand>GACAGATATTTGTAGTTGAAGCACGGCGATACATAACAGCAACGCTGTGTGTACCACTCAATAATCACTTCAAATTGCTAGTGGTAAAATGGCGAGAATGGCTTGCACTCATCTTCTTCCTTCCATGGCAATTCCGCTCAAGTCTTCTTACCTCAATGGATCTTCTCACCAGTGGTTACGACTCTCACAATCTACTCATCCTGTGGTACTCATCAAAAGGCACTTCTCCGTCGCTAGAATAACCATGAGTTTGCGAGCTGGCATCCTAGGCCTTCCTAATGTCCGCAACTCCACACTGCTCAACGCCGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAGAATGGAAAGGCTCAGGCTGCTAATTTTCCTTTTTGCACAATACAGCCAAATGTAAGGATAGTCGCTGTCCCTGATACACGTCTCCATGTTCTTTCTGATATAAGCAAATCCAAACGAGCGGTCCCGGCTTCGATAGAGTTTGTTGATATTGCTGGACTTGTAAAGGAAGCCAGTCAAGGGGAG..............................................................................................................................GGCCTGGGGAATAAGTTCTTGTCACATATACGTGAAGTGGACTCCATACTTCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTACGTTGTTTTGACGACCATGACTTTGTTCATGTGAATGGGAAGGTTGAGCCAAAAGCTGATATTGATGTAATCAACTTGGAATTAATTTTCTCAGATTTGGATCAG........................................................................................................................................................................................................................................................................................................................................................................................ATTGAGAAAAGAATGGAGAAACTCAAAAAAGGTAGAGCTAAAGATTCACAAGCTAAAGTAAAG....................................................................................................................................................GAGGAAGCAGAAAAGTCTGCCTTGGAGAAAATACAACAAGCACTACTGGATGGAAAACCAGCACGATCAGTATCTTTGTCGGAGTTTGAAAA-GATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGC-AATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E345635" ref_strand="+" ref_description="SGN-E345635 [cTOF-18-G20]">
      <seq>agatagccgcaacgctgtgtgtaccactcaataagcacttcaacttgctagtggtaaaatggcgagaatggcttgctctcagcttcttccttccatggcaattccgctcaagtcttctttcctcaatggttcttctcaccagtggttacgactctcagaatctacgcatcctgtggtactcatcaaaaggcgcttctccgtcgctaagataagcatgagtttgcgagctggcatcgttggccttcctaatgtcggcaagtccacgctgttcaacgccgtcgttgagaatggaaaggctcaggctgctaattttcctttttgcacaatagagccaaatgtagggatagtcgctgtccctgatacacgtctccatgttctttctgatataagcaaatccaaacgagcggtcccggcttcgatagagtttgttgatattgctggacttgtaaagggagccagtcaaggggagggcctggggaataagttcttgtcacatatacgtgaagtggactccatacttcaggtagtacgttgttttgaggacaatgacattgttcatgtgaatgggaaggttgagccaaaagctgatattgatgtaatcaacttggaattaattttctcagatttggatcagattgagaaaagaatggagaaactcanaaaagtagagctaaagattcacaagctaaagtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="37556" stop="33468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37256" g_stop="36977" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36976" i_stop="35992" i_length="985">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35991" g_stop="35803" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="469" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35802" i_stop="35677" i_length="126">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35676" g_stop="35623" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="523" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35622" i_stop="34316" i_length="1307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34315" g_stop="34205" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="634" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34204" i_stop="33829" i_length="376">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33828" g_stop="33768" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="694" r_length="60" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E345635" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37256" e_stop="36977"/>
          <exon e_start="35991" e_stop="35803"/>
          <exon e_start="35676" e_stop="35623"/>
          <exon e_start="34315" e_stop="34205"/>
          <exon e_start="33828" e_stop="33768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATAGCCGCAACGCTGTGTGTACCACTCAATAAGCACTTCAACTTGCTAGTGGTAAAATGGCGAGAATGGCTTGCTCTCAGCTTCTTCCTTCCATGGCAATTCCGCTCAAGTCTTCTTTCCTCAATGGTTCTTCTCACCAGTGGTTACGACTCTCAGAATCTACGCATCCTGTGGTACTCATCAAAAGGCGCTTCTCCGTCGCTAAGATAAGCATGAGTTTGCGAGCTGGCATCGTTGGCCTTCCTAATGTCGGCAAGTCCACGCTGTTCAACGCCGTCGTAAGTCTATTTTCACAATATATTTTCTTCTGCAAAGACGCAATTGAATGCTTACCCCATATATTTGTAGAAATGCCGATAGTCTTGCAATTGAAGCTCAGAAAATGGACGTGGAAGCTTAATAATTTAACTACAAGTATGAGTGTGTAGTGAGTTAGATGTTTACTGGAGTGTAAGTATAGTTACTGGTCCTTCTGTCAGAAGGAATTGAAGGTAGATGCTGTTAATTTAAAATTGGATAGCTCTTAAACTGGAAAAGCACAACCCGTAGGAAACTAATGGAAAATTGATGTTGCATATTTTTTTAGATGCTTTTCGAGAGCCGAATTGTTGTACATCTCTTTGATAAATGCATAGTGCATATCTGTATGGAGGATGTTATTCACTAGTTAAAGAGACTGTAACTGAGGTTTTGAGTTGATGAACGTGTTACTAGTAATACATGCCGGGGCAAACCATAATTTCCTTGGGAGGTTGATTTTGTGTAATTCCTAGATGCTTCTCCAATATCCAATATTATGCATACTACATCTATATGAATGATGTTATTAGTTCTACATGTTGGGGAAAAGAAATCATAAAAAATCGTATTACTGAATAATTTGTGTGTTCAGTGCAAGTGTAAACCAGAAAAATGGTAATTGTTGTGCTTCTTCTTGTTATGGTTGTCGATGTAGATCACCACTGTATCTTAAACTTCAGGTATCTTTGAAACCCTCTAGCATTAACTGACAGAATGGGTTACGTGTTCAACAGTTTTGAAGTTTTTGTTTGCTAGCAGGTGTCAGCTACATATGTACTATTAATCTGTTACTATGGTCCATTCTCCATGTATTCCAGTCTAAAAGGCTAAAAAATGGTAGCATATGCTGGAAACTTGACATTGTATTGTTGTAGTTTGCTGTCAAATAACTCCTTTGATTATTCTGCTTGTATGTTTGCTGTTGGTCACATGCCCTTATAGCCATTGCCAATATTCTTGCAGGTTGAGAATGGAAAGGCTCAGGCTGCTAATTTTCCTTTTTGCACAATAGAGCCAAATGTAGGGATAGTCGCTGTCCCTGATACACGTCTCCATGTTCTTTCTGATATAAGCAAATCCAAACGAGCGGTCCCGGCTTCGATAGAGTTTGTTGATATTGCTGGACTTGTAAAGGGAGCCAGTCAAGGGGAGGTTTATTCTCAATAACCTAAAGTTTCCTAATATCAATTATTAGTCATGTTTTCACTTATTGTATCATTGCATCAGTGGCATTATAAATTGAAGATACAACAATTTGTTAAATATTTTCTATGGCAGGGCCTGGGGAATAAGTTCTTGTCACATATACGTGAAGTGGACTCCATACTTCAGGTTTATATACTTTCTAGTTCCTTTATCATTGTTATCTGTAATCTTGTGTTACGTTGAAGTCCATGTTAGTTCCCAGCCCACTTCCATGGAAGTAATGATGAATCTATAGTCATTTGATCCTGATATAAAAACGAGAGAAAAATATTACATAAAATATAGATCTTGATGTATCCCTTTTTGGTAAGTTGTGAAGAAAAAGTACTCATTTCTAACTATTTTTTAAAAATAAGTTTTTTAATTTTTTAATATAAGTTTTTACATTAATTTTTTAAATAATAATTATAGTTTTTTTATGGTTTCCTTTCCTATTTAGATAGATATTTTTACATTCCATTTTGTTGGAGTATTCCCTAAAATCACTGAAAGTGTGATAAGTATAAAGAGACATTACAGTTTTTTTTATAAAATTATTCAATTTTCAGTTTTCATTTTTTAACCTTAAAAATTGAAATTTGAAGCATTTAAAGATCTTTCATTTTTTTTCATGTAATAGCCATTACTGTTTTTATAAAAAAAGATAGTTCAATTTCATTTTCCCCCTTAAAATTGAAATTAGAGGCATTTAAAAATCATCCATTTTTTGCCGTTACAATTTTTTTTAACAAAAAAACTCTTATTTTCTATTTAAAATAGCTATATTAAAATTCCTGTTTTTTTTAATTTTATTTTTAGAGCATATTTTGAAATGTTTTTTGAAAAATTAAAATTCTTGAATAATTGTGGTGCTGACATGTGACACTTTTTACTTCTCCTAATATATATTAGATAGATTTTTTTTTTAAAAAATAGGCAAACCCACATATTATACCCAGTAAAAAAATTACATTAAGAACTGTAATATGAGCTCCTCCGGTTCTTCAAGAAAATATGTGGGTTCCTCCGATTATTTAAAAGAATTAGAAAAATATTAATAACAAGTTAGAAAATATGACATGGCATCCCACTAAGAGAGAAATAATGTATTTTTTTGTGTCAAAGTTGGGTGATATTGTAGTCCTAAAACAAACACAAGTGATATTCCTAGATAATTTCTCTAACATGGGTGACTATCTAGGGAAATTACTCGATTTAATACTTCAATTGCATTTCAAATATGAAAATAATCATTCCAAGGCCTTTTTTTTCTCTTTTGAGTTGTAAGGCTTTATTTTGCTGTTATATTGCATCCTAGCTTATGAGCATGTAAAGACTAAAGAGAAGGAAGAGTGCCCCATCAGTTTGCTTTGAGTTCCTTACTGATTTAAAAAATTTTCTGTCATACATTTTCTGTTGTTGCTTGCTGAAAGTGCTTTTGTGTACTATTTTAGGTAGTACGTTGTTTTGAGGACAATGACATTGTTCATGTGAATGGGAAGGTTGAGCCAAAAGCTGATATTGATGTAATCAACTTGGAATTAATTTTCTCAGATTTGGATCAGGTACTTGTTACAGTTCTGCTTTACATTTACAGGATGCTAACATAAACTAGGGGTATAGCTCATGGAGATGTATGCAGATAAATGGAGAAAAAAGAGGACATAAGATGCTTTTTATTAAAATGGACTAAATACAGATTCGAATGCATGTGATGATGCTAGTATTGCACGAGAGGTGTATATGAATAATAGCTTTTTACGTACCTATGAAGCATGCATGACAGTCTCATGATGGTGTCAGAAAAATGCACACAAGACAAGGGATGTGGATGATATATTTTTTCTTTTTTTTTCAACAGTAATTTTGTAGTCTTTCTTCTCCTTGTAAAGTTTCTAGGTATGCGAACCAACTAATGACACTAAGTTTACAAGAATGCAGATTGAGAAAAGAATGGAGAAACTCAAAAAAGGTAGAGCTAAAGATTCACAAGCTAAAGTAA</genome_strand>
        <mrna_strand>AGATAGCCGCAACGCTGTGTGTACCACTCAATAAGCACTTCAACTTGCTAGTGGTAAAATGGCGAGAATGGCTTGCTCTCAGCTTCTTCCTTCCATGGCAATTCCGCTCAAGTCTTCTTTCCTCAATGGTTCTTCTCACCAGTGGTTACGACTCTCAGAATCTACGCATCCTGTGGTACTCATCAAAAGGCGCTTCTCCGTCGCTAAGATAAGCATGAGTTTGCGAGCTGGCATCGTTGGCCTTCCTAATGTCGGCAAGTCCACGCTGTTCAACGCCGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGAATGGAAAGGCTCAGGCTGCTAATTTTCCTTTTTGCACAATAGAGCCAAATGTAGGGATAGTCGCTGTCCCTGATACACGTCTCCATGTTCTTTCTGATATAAGCAAATCCAAACGAGCGGTCCCGGCTTCGATAGAGTTTGTTGATATTGCTGGACTTGTAAAGGGAGCCAGTCAAGGGGAG..............................................................................................................................GGCCTGGGGAATAAGTTCTTGTCACATATACGTGAAGTGGACTCCATACTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTACGTTGTTTTGAGGACAATGACATTGTTCATGTGAATGGGAAGGTTGAGCCAAAAGCTGATATTGATGTAATCAACTTGGAATTAATTTTCTCAGATTTGGATCAG........................................................................................................................................................................................................................................................................................................................................................................................ATTGAGAAAAGAATGGAGAAACTCANAAAA-GTAGAGCTAAAGATTCACAAGCTAAAGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E729044" ref_strand="+" ref_description="SGN-E729044 [LA19DB10]">
      <seq>gagaatatttgtagttgtagcacggcgatagatagccgcaacgctgtgtgtaccactcaataagcacttcaacttgctagtggtaaaatggcgagaatggcttgctctcagcttcttccttccatggcaattccgctcaagtcttctttcctcaatggttcttctcaccagtggttacgactctcagaatctacgcatcctgtggtactcatcaaaaggcgcttctccgtcgctaagataagcatgagtttgcgagctggcatcgttggccttcctaatgtcggcaagtccacgctgttcaacgccgtcgttgagaatggaaaggctcaggctgctaattttcctttttgcacaatagagccaaatgtagggatagtcgctgtccctgatacacgtctccatgttctttctgatataagcaaatccaaacgagcggtcccggcttcgatagagtttgctgatattgctggacttgtatatggagccaatcaaggggagggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="37586" stop="35502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37286" g_stop="36977" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36976" i_stop="35992" i_length="985">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35991" g_stop="35803" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="498" r_length="189" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E729044" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37286" e_stop="36977"/>
          <exon e_start="35991" e_stop="35803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAATATTTGTAGTTGTAGCACGGCGATAGATAGCCGCAACGCTGTGTGTACCACTCAATAAGCACTTCAACTTGCTAGTGGTAAAATGGCGAGAATGGCTTGCTCTCAGCTTCTTCCTTCCATGGCAATTCCGCTCAAGTCTTCTTTCCTCAATGGTTCTTCTCACCAGTGGTTACGACTCTCAGAATCTACGCATCCTGTGGTACTCATCAAAAGGCGCTTCTCCGTCGCTAAGATAAGCATGAGTTTGCGAGCTGGCATCGTTGGCCTTCCTAATGTCGGCAAGTCCACGCTGTTCAACGCCGTCGTAAGTCTATTTTCACAATATATTTTCTTCTGCAAAGACGCAATTGAATGCTTACCCCATATATTTGTAGAAATGCCGATAGTCTTGCAATTGAAGCTCAGAAAATGGACGTGGAAGCTTAATAATTTAACTACAAGTATGAGTGTGTAGTGAGTTAGATGTTTACTGGAGTGTAAGTATAGTTACTGGTCCTTCTGTCAGAAGGAATTGAAGGTAGATGCTGTTAATTTAAAATTGGATAGCTCTTAAACTGGAAAAGCACAACCCGTAGGAAACTAATGGAAAATTGATGTTGCATATTTTTTTAGATGCTTTTCGAGAGCCGAATTGTTGTACATCTCTTTGATAAATGCATAGTGCATATCTGTATGGAGGATGTTATTCACTAGTTAAAGAGACTGTAACTGAGGTTTTGAGTTGATGAACGTGTTACTAGTAATACATGCCGGGGCAAACCATAATTTCCTTGGGAGGTTGATTTTGTGTAATTCCTAGATGCTTCTCCAATATCCAATATTATGCATACTACATCTATATGAATGATGTTATTAGTTCTACATGTTGGGGAAAAGAAATCATAAAAAATCGTATTACTGAATAATTTGTGTGTTCAGTGCAAGTGTAAACCAGAAAAATGGTAATTGTTGTGCTTCTTCTTGTTATGGTTGTCGATGTAGATCACCACTGTATCTTAAACTTCAGGTATCTTTGAAACCCTCTAGCATTAACTGACAGAATGGGTTACGTGTTCAACAGTTTTGAAGTTTTTGTTTGCTAGCAGGTGTCAGCTACATATGTACTATTAATCTGTTACTATGGTCCATTCTCCATGTATTCCAGTCTAAAAGGCTAAAAAATGGTAGCATATGCTGGAAACTTGACATTGTATTGTTGTAGTTTGCTGTCAAATAACTCCTTTGATTATTCTGCTTGTATGTTTGCTGTTGGTCACATGCCCTTATAGCCATTGCCAATATTCTTGCAGGTTGAGAATGGAAAGGCTCAGGCTGCTAATTTTCCTTTTTGCACAATAGAGCCAAATGTAGGGATAGTCGCTGTCCCTGATACACGTCTCCATGTTCTTTCTGATATAAGCAAATCCAAACGAGCGGTCCCGGCTTCGATAGAGTTTGTTGATATTGCTGGACTTGTAAAGGGAGCCAGTCAAGGGGAG</genome_strand>
        <mrna_strand>GAGAA-TATTTGTAGTTGTAGCACGGCGATAGATAGCCGCAACGCTGTGTGTACCACTCAATAAGCACTTCAACTTGCTAGTGGTAAAATGGCGAGAATGGCTTGCTCTCAGCTTCTTCCTTCCATGGCAATTCCGCTCAAGTCTTCTTTCCTCAATGGTTCTTCTCACCAGTGGTTACGACTCTCAGAATCTACGCATCCTGTGGTACTCATCAAAAGGCGCTTCTCCGTCGCTAAGATAAGCATGAGTTTGCGAGCTGGCATCGTTGGCCTTCCTAATGTCGGCAAGTCCACGCTGTTCAACGCCGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGAATGGAAAGGCTCAGGCTGCTAATTTTCCTTTTTGCACAATAGAGCCAAATGTAGGGATAGTCGCTGTCCCTGATACACGTCTCCATGTTCTTTCTGATATAAGCAAATCCAAACGAGCGGTCCCGGCTTCGATAGAGTTTGCTGATATTGCTGGACTTGTATATGGAGCCAATCAAGGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E253197" ref_strand="+" ref_description="SGN-E253197 [cLEG-26-F11]">
      <seq>ttgtttcattttcccaaatttttgggctcaaataccaattttggtgccattatttgggtaattttcgaatttaccatgtagcgtcgtcgctgagttaaacccgagaaatatttgtagttgtagcacggcgatagatagccgcaacgctgtgtgtaccactcaataagcaccttcaacttgctagtggtaaaatggcgagaatggcttgctctcagcttcttccttccatggcaattccgctcaagtcttctttcctcaatggttcttctcaccagtggttacgactctcagaatctacgcatcctgtggtactcatcaaaaggcgcttctccgtcgctaagataagcatgagtttgcgagctggcatcgttggccttcctaatgtcggcaagtccacgctgttcaacgccgtcgttgagaatggaaaggctcaggctgctaattttcctttttgcacaatagagccaaatgtagggatagtcgctgtccctgatacacgtctccatgttctttctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="37686" stop="35588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37386" g_stop="36977" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36976" i_stop="35992" i_length="985">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35991" g_stop="35888" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="517" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E253197" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37386" e_stop="36977"/>
          <exon e_start="35991" e_stop="35888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTCATTTTCCCAAATTTTTGGGCTCAAATA-CAATTTTGGTGCAATTATTTGGGTAATTTTCTAATTTA-CATGTAGCGTCGTCGCTGAGTTAAACCCGAGAAATATTTGTAGTTGTAGCACGGCGATAGATAGCCGCAACGCTGTGTGTACCACTCAATAAGCA-CTTCAACTTGCTAGTGGTAAAATGGCGAGAATGGCTTGCTCTCAGCTTCTTCCTTCCATGGCAATTCCGCTCAAGTCTTCTTTCCTCAATGGTTCTTCTCACCAGTGGTTACGACTCTCAGAATCTACGCATCCTGTGGTACTCATCAAAAGGCGCTTCTCCGTCGCTAAGATAAGCATGAGTTTGCGAGCTGGCATCGTTGGCCTTCCTAATGTCGGCAAGTCCACGCTGTTCAACGCCGTCGTAAGTCTATTTTCACAATATATTTTCTTCTGCAAAGACGCAATTGAATGCTTACCCCATATATTTGTAGAAATGCCGATAGTCTTGCAATTGAAGCTCAGAAAATGGACGTGGAAGCTTAATAATTTAACTACAAGTATGAGTGTGTAGTGAGTTAGATGTTTACTGGAGTGTAAGTATAGTTACTGGTCCTTCTGTCAGAAGGAATTGAAGGTAGATGCTGTTAATTTAAAATTGGATAGCTCTTAAACTGGAAAAGCACAACCCGTAGGAAACTAATGGAAAATTGATGTTGCATATTTTTTTAGATGCTTTTCGAGAGCCGAATTGTTGTACATCTCTTTGATAAATGCATAGTGCATATCTGTATGGAGGATGTTATTCACTAGTTAAAGAGACTGTAACTGAGGTTTTGAGTTGATGAACGTGTTACTAGTAATACATGCCGGGGCAAACCATAATTTCCTTGGGAGGTTGATTTTGTGTAATTCCTAGATGCTTCTCCAATATCCAATATTATGCATACTACATCTATATGAATGATGTTATTAGTTCTACATGTTGGGGAAAAGAAATCATAAAAAATCGTATTACTGAATAATTTGTGTGTTCAGTGCAAGTGTAAACCAGAAAAATGGTAATTGTTGTGCTTCTTCTTGTTATGGTTGTCGATGTAGATCACCACTGTATCTTAAACTTCAGGTATCTTTGAAACCCTCTAGCATTAACTGACAGAATGGGTTACGTGTTCAACAGTTTTGAAGTTTTTGTTTGCTAGCAGGTGTCAGCTACATATGTACTATTAATCTGTTACTATGGTCCATTCTCCATGTATTCCAGTCTAAAAGGCTAAAAAATGGTAGCATATGCTGGAAACTTGACATTGTATTGTTGTAGTTTGCTGTCAAATAACTCCTTTGATTATTCTGCTTGTATGTTTGCTGTTGGTCACATGCCCTTATAGCCATTGCCAATATTCTTGCAGGTTGAGAATGGAAAGGCTCAGGCTGCTAATTTTCCTTTTTGCACAATAGAGCCAAATGTAGGGATAGTCGCTGTCCCTGATACACGTCTCCATGTTCTTTCTGA</genome_strand>
        <mrna_strand>TTGTTTCATTTTCCCAAATTTTTGGGCTCAAATACCAATTTTGGTGCCATTATTTGGGTAATTTTCGAATTTACCATGTAGCGTCGTCGCTGAGTTAAACCCGAGAAATATTTGTAGTTGTAGCACGGCGATAGATAGCCGCAACGCTGTGTGTACCACTCAATAAGCACCTTCAACTTGCTAGTGGTAAAATGGCGAGAATGGCTTGCTCTCAGCTTCTTCCTTCCATGGCAATTCCGCTCAAGTCTTCTTTCCTCAATGGTTCTTCTCACCAGTGGTTACGACTCTCAGAATCTACGCATCCTGTGGTACTCATCAAAAGGCGCTTCTCCGTCGCTAAGATAAGCATGAGTTTGCGAGCTGGCATCGTTGGCCTTCCTAATGTCGGCAAGTCCACGCTGTTCAACGCCGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGAATGGAAAGGCTCAGGCTGCTAATTTTCCTTTTTGCACAATAGAGCCAAATGTAGGGATAGTCGCTGTCCCTGATACACGTCTCCATGTTCTTTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E316880" ref_strand="+" ref_description="SGN-E316880 [cTOA-27-G22]">
      <seq>taacactcataaaacagagccactgttcttctttacgcagaggagctagcaagatgattactggcggaagaagtttgatttcttcacagccggcgttttcaaatgatgcaaagaagcttctcgtatgcacaggaaacaccgtttctatttttagcacctccacaggcttacagattgctgaattggaaggtcataggggattggtaacatcggtggtggtagtaccatctactactccggcaggcaaactattgtgctactgctggacttcatctgaggatggtactattaaatattgggacttttccgtgccggagctaatgagaagtattgatgttaagttgcccatttactcaatggtaattccaggtttatcatcagaactcagagagagtagcgaaaagccttctgatctttttgcatatgtgtctgtcatagtgttgaaagaacagctgggagggagctgtgctttatggtggcagataaggaagtgtaacttaactaaatgtactttggttggtggagtgactctggctgagagtaaaaacgcactatctataacattaagctgctctggaagatacatgggcgtctgtgacaagcgcaagcttcgcatttgggaaatacaactaaagattctgatcattcagtgcttcagaacatcagattacatcatacgaaaaccctgagcactctagcttttcatccacagatagaatagtttcagctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="49818" stop="52727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50118" g_stop="50290" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50291" i_stop="50378" i_length="88">
            <donor d_prob="0.590" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50379" g_stop="50564" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="359" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50565" i_stop="51309" i_length="745">
            <donor d_prob="0.729" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51310" g_stop="51489" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="539" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51490" i_stop="52233" i_length="744">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.124" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52234" g_stop="52427" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="731" r_length="192" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E316880" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50118" e_stop="50290"/>
          <exon e_start="50379" e_stop="50564"/>
          <exon e_start="51310" e_stop="51489"/>
          <exon e_start="52234" e_stop="52427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACACTCATAAAACAGAGCCACTGTTCTTCTTTACGCAGAGGAGCTAGCAAGATGATTACTGGCGGAAGAAGTTTGATTTCTTCACAGCCGGCGTTTTCAAATGATGCAAAGAAGCTTCTCGTATGCACAGGAAACACCGTTTCTATTTTTAGCACCTCCACAGGCTTACAGGTTCAGTTTACGTTTGCGACAAACTCAACAGCTAAAATAAATTCACTGTATAAGTTAATGTAAGTAGTTAATTTTGTAATTCTTACAGATTGCTGAATTGGAAGGTCATAGGGGATTGGTAACATCGGTGGTGGTAGTACCATCTACTACTCCGGCAGGCAAACTATTGTGCTACTGCTGGACTTCATCTGAGGATGGTACTATTAAATATTGGGACTTTTCCGTGCCGGAGCTAATGAGAAGTATTGATGTTAAGTTGCCCATTTACTCAATGGTAAACAGCTTTTTACTTTTAAGAGTGCCTCAACGTGGATTAGGCAGTGCTTTGCACCTTCTGTGACATAAATTCCAGATGTAGTTATACATTGTATATAGCTACCTCAAGCACCTCCACTGTTCCTTGGGTACCTCCTACCAAGGCCTAGACGGTTGGGTAAAAAAGGCATCCTCTTTTGCCTCCGTTTAGTATCTAAATCTGGAATCATTATTATATCAATTCTAAAGTTGAGAATTTTATGTTTTGGACTTCTCAAGAAAATATTGATTTTACTGAAAAATAATAATATAGTAACTGAAATTACAAGGAGAAAACGGACTGTTAAAGGGAATAGGATCTAGCTTCAGGTGATTCAGGTGTTAGTGATGCTCTAATTTGCTAAATAAATGCCATGCCAAAGGCATGGGAATTTCTGAACTATATTTGGGCATGCACACAAGTATTTGGATGGTACAGAATGAGTAGTAGTTAGCTTGAGATCTTTTCCTACTTGAGGAAATGATAGTTGTCTAGATACCAGGAATGTGGGACTAGATTCCCGGAAGAACTCACAAATTGCACTATGCACTAACAAAGTAACAACCCGTCAAGACGGAGCCATTTTCCAGCTTCGCCTCTGCTGTTGTTTTATGTTGTTCACTAAGTACTACTCACGTGTAGCAACATCTCTTTCTCAAACTTTGTGTTTGACATTGCACTTTGCAGCATAACTATCTTATCATGCCTCTTTCCTCTTTATCAGGTAATTCCAGGTTTATCATCAGAACTCAGAGAGAGTAGCGAAAAGCCTTCTGATCTTTTTGCATATGTGTCTGTCATAGTGTTGAAAGAACAGCTGGGAGGGAGCTGTGCTTTATGGTGGCAGATAAGGAAGTGTAACTTAACTAAATGTACTTTGGTTGGTGGAGTGACTCTGGCTGAGGTATGCAAAATTGTCTTCCATGCCTTCTCTTTTTACAGGGAAGAAAAAGTGTCTGTTGATTGTTATTTTTGCAGTAAGTACAACAACTTCTTACCTAGTGTAATATTACACAAGTGGCGTTTGGGGAGGGTGATGTGTACACAACCTTACCCTTACCTTGTAAAGGTAGAGAGGTTGTTTCTGATAGACCCTTGGCTCAAAGAAAGCATATCAAAAGATGGCTCCATGTAAAAAACCGGTTAGGTCTAAAACAGTAGATCATTGTTGAATTGTTTAAATTGTAACCAGTGTTTCATTACTTTAGAGCTTTCAAATTTTGATTGTGCCAAATAGAAAATTTATTGCAAAAGGCATAGGCTTTATTTAAAAACTTTTTTGTTAAATCAGCATGAAGATCCCCCTTTTCCATTTCTTTATCAGATCCATCTGTGAATAAAATTTCATCTATCCTACATAAGAAATATATCACACCAACTAATGTTATCAATTTTGCAAGTGTTTTCCGGGGTAAAAGATATGGTTTCAGGTTGAACTCTCTCTAGCTTGATGAAAAGTTGTCTGAGCTATCTTTTGCTTCTAGATCGTTCACACCGTTAGTCACTATCAGAAAGGTGTTGATGATCTTTCACATCATTGCATTTGCCACTGTCAAATATTTACCTACCTTATTTTGCAAAGTAAATGCACATAATAGCATTTTTGTATGCGATAAAAAATAAGCAAGGATTATAACTTTCTCTCCAGAGTAAAAACGCACTATCTATAACATTAAGCTGCTCTGGAAGATACATGGGCGTCTGTGACAAGCGCAAGCTTCGCATTTGGGAAATACCAACTAAAGATTCTGATCATTCAGTGCTTCAGAACATCAGATTACATCATACGAAAACCCTGAGCACTCTAGCTTTTCATCCAACAGATAGAATAGTTTCAGCTGG</genome_strand>
        <mrna_strand>TAACACTCATAAAACAGAGCCACTGTTCTTCTTTACGCAGAGGAGCTAGCAAGATGATTACTGGCGGAAGAAGTTTGATTTCTTCACAGCCGGCGTTTTCAAATGATGCAAAGAAGCTTCTCGTATGCACAGGAAACACCGTTTCTATTTTTAGCACCTCCACAGGCTTACAG........................................................................................ATTGCTGAATTGGAAGGTCATAGGGGATTGGTAACATCGGTGGTGGTAGTACCATCTACTACTCCGGCAGGCAAACTATTGTGCTACTGCTGGACTTCATCTGAGGATGGTACTATTAAATATTGGGACTTTTCCGTGCCGGAGCTAATGAGAAGTATTGATGTTAAGTTGCCCATTTACTCAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTCCAGGTTTATCATCAGAACTCAGAGAGAGTAGCGAAAAGCCTTCTGATCTTTTTGCATATGTGTCTGTCATAGTGTTGAAAGAACAGCTGGGAGGGAGCTGTGCTTTATGGTGGCAGATAAGGAAGTGTAACTTAACTAAATGTACTTTGGTTGGTGGAGTGACTCTGGCTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAAAAACGCACTATCTATAACATTAAGCTGCTCTGGAAGATACATGGGCGTCTGTGACAAGCGCAAGCTTCGCATTTGGGAAATA-CAACTAAAGATTCTGATCATTCAGTGCTTCAGAACATCAGATTACATCATACGAAAACCCTGAGCACTCTAGCTTTTCATCC-ACAGATAGAATAGTTTCAGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E340103" ref_strand="+" ref_description="SGN-E340103 [cTOF-3-H10]">
      <seq>actgttcttctttacgcagaggagctagcaagatgattactggcggaagaagtttgatttcttcacagccggcgttttcaaatgatgcaaagaagcttctcgtatgcacaggaaacaccgtttctatttttagcacctccacaggcttacagattgctgaattggaaggtcataggggattggtaacatcggtggtggtagtaccatctactactccggcaggcaaactattgtgctactgctggacttcatctgaggatggtactattaaatattgggacttttccgtgccggagctaatgagaagtattgatgttaagttgcccatttactcaatggtaattccaggtttatcatcagaactcagagagagtagcgaaaagccttctgatctttttgcatatgtgtctgtcatagtgttgaaagaacagctgggagggagctgtgctttatggtggcagataaggaagtgtaacttaactaaatgtactttggttggtggagtgactctggctgagagtaaaaacgcactatctataacattaagctgctctggaagatacatgggcgtctgtgacaagcgcaagcttcgcatttgggaaataccaactaaagattctgatcattcagtgcttcagaacatcagattacatcatacgaaaaccctgagcactctagcttttcatccaacagatagaatagtttcagctggagatgtacaggaaagatcttatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="49839" stop="52754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50139" g_stop="50290" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50291" i_stop="50378" i_length="88">
            <donor d_prob="0.590" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50379" g_stop="50564" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="338" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50565" i_stop="51309" i_length="745">
            <donor d_prob="0.729" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51310" g_stop="51489" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="518" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51490" i_stop="52233" i_length="744">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.124" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52234" g_stop="52454" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="737" r_length="219" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E340103" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50139" e_stop="50290"/>
          <exon e_start="50379" e_stop="50564"/>
          <exon e_start="51310" e_stop="51489"/>
          <exon e_start="52234" e_stop="52454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGTTCTTCTTTACGCAGAGGAGCTAGCAAGATGATTACTGGCGGAAGAAGTTTGATTTCTTCACAGCCGGCGTTTTCAAATGATGCAAAGAAGCTTCTCGTATGCACAGGAAACACCGTTTCTATTTTTAGCACCTCCACAGGCTTACAGGTTCAGTTTACGTTTGCGACAAACTCAACAGCTAAAATAAATTCACTGTATAAGTTAATGTAAGTAGTTAATTTTGTAATTCTTACAGATTGCTGAATTGGAAGGTCATAGGGGATTGGTAACATCGGTGGTGGTAGTACCATCTACTACTCCGGCAGGCAAACTATTGTGCTACTGCTGGACTTCATCTGAGGATGGTACTATTAAATATTGGGACTTTTCCGTGCCGGAGCTAATGAGAAGTATTGATGTTAAGTTGCCCATTTACTCAATGGTAAACAGCTTTTTACTTTTAAGAGTGCCTCAACGTGGATTAGGCAGTGCTTTGCACCTTCTGTGACATAAATTCCAGATGTAGTTATACATTGTATATAGCTACCTCAAGCACCTCCACTGTTCCTTGGGTACCTCCTACCAAGGCCTAGACGGTTGGGTAAAAAAGGCATCCTCTTTTGCCTCCGTTTAGTATCTAAATCTGGAATCATTATTATATCAATTCTAAAGTTGAGAATTTTATGTTTTGGACTTCTCAAGAAAATATTGATTTTACTGAAAAATAATAATATAGTAACTGAAATTACAAGGAGAAAACGGACTGTTAAAGGGAATAGGATCTAGCTTCAGGTGATTCAGGTGTTAGTGATGCTCTAATTTGCTAAATAAATGCCATGCCAAAGGCATGGGAATTTCTGAACTATATTTGGGCATGCACACAAGTATTTGGATGGTACAGAATGAGTAGTAGTTAGCTTGAGATCTTTTCCTACTTGAGGAAATGATAGTTGTCTAGATACCAGGAATGTGGGACTAGATTCCCGGAAGAACTCACAAATTGCACTATGCACTAACAAAGTAACAACCCGTCAAGACGGAGCCATTTTCCAGCTTCGCCTCTGCTGTTGTTTTATGTTGTTCACTAAGTACTACTCACGTGTAGCAACATCTCTTTCTCAAACTTTGTGTTTGACATTGCACTTTGCAGCATAACTATCTTATCATGCCTCTTTCCTCTTTATCAGGTAATTCCAGGTTTATCATCAGAACTCAGAGAGAGTAGCGAAAAGCCTTCTGATCTTTTTGCATATGTGTCTGTCATAGTGTTGAAAGAACAGCTGGGAGGGAGCTGTGCTTTATGGTGGCAGATAAGGAAGTGTAACTTAACTAAATGTACTTTGGTTGGTGGAGTGACTCTGGCTGAGGTATGCAAAATTGTCTTCCATGCCTTCTCTTTTTACAGGGAAGAAAAAGTGTCTGTTGATTGTTATTTTTGCAGTAAGTACAACAACTTCTTACCTAGTGTAATATTACACAAGTGGCGTTTGGGGAGGGTGATGTGTACACAACCTTACCCTTACCTTGTAAAGGTAGAGAGGTTGTTTCTGATAGACCCTTGGCTCAAAGAAAGCATATCAAAAGATGGCTCCATGTAAAAAACCGGTTAGGTCTAAAACAGTAGATCATTGTTGAATTGTTTAAATTGTAACCAGTGTTTCATTACTTTAGAGCTTTCAAATTTTGATTGTGCCAAATAGAAAATTTATTGCAAAAGGCATAGGCTTTATTTAAAAACTTTTTTGTTAAATCAGCATGAAGATCCCCCTTTTCCATTTCTTTATCAGATCCATCTGTGAATAAAATTTCATCTATCCTACATAAGAAATATATCACACCAACTAATGTTATCAATTTTGCAAGTGTTTTCCGGGGTAAAAGATATGGTTTCAGGTTGAACTCTCTCTAGCTTGATGAAAAGTTGTCTGAGCTATCTTTTGCTTCTAGATCGTTCACACCGTTAGTCACTATCAGAAAGGTGTTGATGATCTTTCACATCATTGCATTTGCCACTGTCAAATATTTACCTACCTTATTTTGCAAAGTAAATGCACATAATAGCATTTTTGTATGCGATAAAAAATAAGCAAGGATTATAACTTTCTCTCCAGAGTAAAAACGCACTATCTATAACATTAAGCTGCTCTGGAAGATACATGGGCGTCTGTGACAAGCGCAAGCTTCGCATTTGGGAAATACCAACTAAAGATTCTGATCATTCAGTGCTTCAGAACATCAGATTACATCATACGAAAACCCTGAGCACTCTAGCTTTTCATCCAACAGATAGAATAGTTTCAGCTGGAGATGTAACAGGAAGGATCTTAATATG</genome_strand>
        <mrna_strand>ACTGTTCTTCTTTACGCAGAGGAGCTAGCAAGATGATTACTGGCGGAAGAAGTTTGATTTCTTCACAGCCGGCGTTTTCAAATGATGCAAAGAAGCTTCTCGTATGCACAGGAAACACCGTTTCTATTTTTAGCACCTCCACAGGCTTACAG........................................................................................ATTGCTGAATTGGAAGGTCATAGGGGATTGGTAACATCGGTGGTGGTAGTACCATCTACTACTCCGGCAGGCAAACTATTGTGCTACTGCTGGACTTCATCTGAGGATGGTACTATTAAATATTGGGACTTTTCCGTGCCGGAGCTAATGAGAAGTATTGATGTTAAGTTGCCCATTTACTCAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTCCAGGTTTATCATCAGAACTCAGAGAGAGTAGCGAAAAGCCTTCTGATCTTTTTGCATATGTGTCTGTCATAGTGTTGAAAGAACAGCTGGGAGGGAGCTGTGCTTTATGGTGGCAGATAAGGAAGTGTAACTTAACTAAATGTACTTTGGTTGGTGGAGTGACTCTGGCTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAAAAACGCACTATCTATAACATTAAGCTGCTCTGGAAGATACATGGGCGTCTGTGACAAGCGCAAGCTTCGCATTTGGGAAATACCAACTAAAGATTCTGATCATTCAGTGCTTCAGAACATCAGATTACATCATACGAAAACCCTGAGCACTCTAGCTTTTCATCCAACAGATAGAATAGTTTCAGCTGGAGATGT-ACAGGAAAGATCTT-ATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E688447" ref_strand="+" ref_description="SGN-E688447 [t3_tus_50_i15]">
      <seq>aacgctggatggacatgccattctgttggttcctataagaaaaagccaatgacagctgctgccttttctggagatggttctgttctggctgtagctgcaaaaaaagttattacattgtgggatccggagaggaatattcttgtacctacagttggggagagtcttgagccaatctcttccttagcatttattgggaagtcagagtatgtggtaaccacatcgcaaggttctaaggctcaagtatcagtgtggagcatgtcaaagctgactgtatcatggtcttacaaacttaagatagaagctgtaacttgtgcgatggatgattccttgtttgccgtcctggcccttctcccaaagccagttggacctgtgatgtctaatgaagccacaactctggatggcgatggagtgatcttgttattcagggccacagatcatgttcccgtaaggatctggtttgtaagaaaggcaaaaggtgcttcacttgctttcattcgcggaagtcctaagtcagaggatgatgttactgatggcagatcagtgcagttgctattagcttacctcagcgttgatcatgaatatatgctttttgatccactcgacggccacacccatatacataagatgagccgaggaaatcttgctgatcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="56379" stop="59774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56679" g_stop="56716" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56717" i_stop="57005" i_length="289">
            <donor d_prob="0.545" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57006" g_stop="57135" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="168" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57136" i_stop="57524" i_length="389">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57525" g_stop="57657" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="301" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57658" i_stop="58685" i_length="1028">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58686" g_stop="58852" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="468" r_length="167" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58853" i_stop="59290" i_length="438">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59291" g_stop="59474" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="652" r_length="184" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E688447" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56679" e_stop="56716"/>
          <exon e_start="57006" e_stop="57135"/>
          <exon e_start="57525" e_stop="57657"/>
          <exon e_start="58686" e_stop="58852"/>
          <exon e_start="59291" e_stop="59474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGCTGGATGGACATGCCATTCTGTTGGTTCCTATAAGTATGTTAGGCTTAAATTTTAAAGGACGACTACATGGTCAGATAGAAAAATTGCCCAACCATGTAAAAAAATCCCAACTGTTTGAGAGAAGAAATTCTAGATGAAAATGCCACTTCCTTTGTTGTTCACTTTGTTTATTTGCACAAAACACTAGCAATTAGATGTCATTTGCATTTGGTGTTCTATGATATATGTCTGCTCATTCGAACTCTGCCATTGTTGATGACTACAACATAGTAAATTGATAGGACCTCTGTTTCTCTGTTTAATATGCTTTCTCCTTTAATAGGAAAAAGCCAATGACAGCTGCTGCCTTTTCTGGAGATGGTTCTGTTCTGGCTGTAGCTGCAGAAAAAGTTATTACATTGTGGGATCCGGAGAGGAATATTCTTGTAGCTACAGTTGGGGAGAGTCTTGAGGTAAGTTCTTGGCATGCCAGTATTAATTTTACACTATTGACCTATAAAAAAATAACGATTTCACACTTCCTAGTTCAAATTTAAGTTGCTTGCCTTGGGGAAAGAAAGTTTTTCACCTAGTATTTGAAACCTTTTTACTTAAAGTGTTCTTTATGACTCACTTCTGAGTTGCTGTCTGGTAACTTCATTGGATGGCAAAGAAGTTAGCTGAGGGTTATCCTTTTTGTTAAACAATAAACGGAAATATGAGCACATAAAACAACCGAAAACAAATCTTGAAAATCTTAATTTACAGTTTTGATGCTTTCCTTGTGGCAATTTATACACCTTTATCATTCTTTCCGTATGTATACAATATTTTTCTCATTTGAACTGTTTTCTATGTGCAGCCAATCTCTTCCTTAGCATTTATTGGGAAGTCAGAGTATGTGGTAACCACATCGCAAGGTTCTAAGGCTCAAGTATCAGTGTGGAGCATGTCAAAGCTGTCTGTATCATGGTCTTACAAACTTAAGATAGAAGGTTTGTATATATCTCTTGTTTATCATACTTCGCCCCAATAAACTTTAAACAAATATAAACCACTTGCTTTTGGCAGCTTATGATAATTCTCTAATCTTATCATTTATTTCTAACGTTCTGCTTCTAGTTACTTAGAAAAAATGGATTAATATCAATGCAATTGTATGTCAGATACTGAAATTTGTTATTTAAGTGCAACTTGATCATTATAGTGCTAAATTCTCTATGTTCGGTGTTTTTAATGTCATGAAGCGTGTGCTTCACTTTTTCTTAAAGCCCCATGGATGCTTTTGTTTTTTGTGATTTTCTTCAAAACACTGGCATCGGAAGTGAATTGCCAACCATATTTCTCCATTTTTGAAGTTCTCATAGTTTTTGCTTCCGGAATTACGAGCTTGGCTCTTGAATTTGAATTGTTAGGTGTCATATGCAAATGGAAGTATGCAATCTTGCTAAAAAATTAACTGAAGCAAAGGGCTGGTGGATATATTGAATATGTAGTCTGGCCAATGGTAGATTATGCATTGTGATAGTCTTTTTATACCATGAATCTTGCTGCCCTTGTTATCAGAGTTGCATGGCTTGGAGTACAACTAGTAAGCTAATTCTCTTTCAAGCCAAACCCAGGACAGGTCTTTTGGGGAAATCTTAAGCTATCTTGCTAGTGCTAACAGTCCAATTTTGCTGCATTGGGTTTCCTATTAAAAAAAGAATTGCTGCTTTGGAATAGGAAAGCAGGAAATGAGTTGAGGAGACTCAGATTCTAAAATAAGTTTTCCTTAATTTGCACGTATATGTATAATCTAAAAAAGAATTGCTGCTTTGGAATAGGAAAGCAGGAAATGACTTGAGGAGACTGGGATTCTAAAATAAGTTTTCCTTTAATTTGCATGTATATGTATAATCTAACTAAAAGGTCTGAATAAGTCTAGCAGATTCATGGTGAACTTGTAGGCAGATGTGTCATACATTACTGGAAAATCTTTGTTAATGTTTCATCCTAAATAGTATCTTATTAATCACTGCAGCTGTAACTTGTGCGATGGATGATTCCTTGTTTGCCGTCCTGGCCCTTCTCCCAAAGCCAGTTGGACCTGTGATGTCTAATGAAGCCACAACTCTGGATGGCGATGGAGTGATCTTGTTATTCAGGGCCACAGATCATGTTCCCGTAGGGATCTGGTTTGTAAGAAAGGTATTGGCTCCTGTCTCAAATTTTGAGTTCTTGTTTCTTTCGAATGTTTTAGTTGGGAGCTTGATGTCAGTTACAATGGGGAATCGAATCACCTTGCACTCGTTTAGAGGTGGTAAGATCTTGATCTTATGGAGGCTGTTGTGAAACCGATGGGAGAAGGCTTGGACGTATAGCAAGATTAAAATAATTACATTCACCCTGACCTAGGTTTTGTCTGTCTTCATTCCCTTGTTTTTCCTGCACCCTGAGTACAGATGTTTTAGGACGCCCTTCTAATTTCCTGTCACCTTAACCCTTCTGACAGTTTCTTGTGCCTTTCTAATTTATTCATATATTGGGAGAGGTATCACATTTTCTAAGGTGAAAACTCTATTTATAGATGGGACGGGAACTGGACATCTTTACCTTTTTTTTGCATCTCATCCTTTTTCTTTACAGGCAAAAGGTGCTTCACTTGCTTTCATTCGCGGAAGTCCTAAGTCAGAGGATGATGTTACTGATGGCAGATCAGTGCAGTTGCTATTAGCTTACCTCAGCGTTGATCATGAATATATGCTTTTTGATCCACTCGACGGCCACACCCATATACATAAGATAAGCCGAGGAAATCTTGCTGATCTTG</genome_strand>
        <mrna_strand>AACGCTGGATGGACATGCCATTCTGTTGGTTCCTATAA.................................................................................................................................................................................................................................................................................................GAAAAAGCCAATGACAGCTGCTGCCTTTTCTGGAGATGGTTCTGTTCTGGCTGTAGCTGCAAAAAAAGTTATTACATTGTGGGATCCGGAGAGGAATATTCTTGTACCTACAGTTGGGGAGAGTCTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................CCAATCTCTTCCTTAGCATTTATTGGGAAGTCAGAGTATGTGGTAACCACATCGCAAGGTTCTAAGGCTCAAGTATCAGTGTGGAGCATGTCAAAGCTGACTGTATCATGGTCTTACAAACTTAAGATAGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAACTTGTGCGATGGATGATTCCTTGTTTGCCGTCCTGGCCCTTCTCCCAAAGCCAGTTGGACCTGTGATGTCTAATGAAGCCACAACTCTGGATGGCGATGGAGTGATCTTGTTATTCAGGGCCACAGATCATGTTCCCGTAAGGATCTGGTTTGTAAGAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGGTGCTTCACTTGCTTTCATTCGCGGAAGTCCTAAGTCAGAGGATGATGTTACTGATGGCAGATCAGTGCAGTTGCTATTAGCTTACCTCAGCGTTGATCATGAATATATGCTTTTTGATCCACTCGACGGCCACACCCATATACATAAGATGAGCCGAGGAAATCTTGCTGATCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E550757" ref_strand="+" ref_description="SGN-E550757 [TUS-50-I15]">
      <seq>aacgctggatggacatgccattctgttggttcctataagaaaaagccaatgacagctgctgccttttctggagatggttctgttctggctgtagctgcaaaaaaagttattacattgtgggatccggagaggaatattcttgtacctacagttggggagagtcttgagccaatctcttccttagcatttattgggaagtcagagtatgtggtaaccacatcgcaaggttctaaggctcaagtatcagtgtggagcatgtcaaagctgactgtatcatggtcttacaaacttaagatagaagctgtaacttgtgcgatggatgattccttgtttgccgtcctggcccttctcccaaagccagttggacctgtgatgtctaatgaagccacaactctggatggcgatggagtgatcttgttattcagggccacagatcatgttcccgtaaggatctggtttgtaagaaaggcaaaaggtgcttcacttgctttcattcgcggaagtcctaagtcagaggatgatgttactgatggcagatcactgcagttgctattaacttacctcagcgttgatcatgaatatatgctttttgatccactcgacggccacacccatataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="56379" stop="59742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56679" g_stop="56716" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56717" i_stop="57005" i_length="289">
            <donor d_prob="0.545" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57006" g_stop="57135" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="168" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57136" i_stop="57524" i_length="389">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57525" g_stop="57657" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="301" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57658" i_stop="58685" i_length="1028">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58686" g_stop="58852" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="468" r_length="167" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58853" i_stop="59290" i_length="438">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59291" g_stop="59442" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="620" r_length="152" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E550757" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56679" e_stop="56716"/>
          <exon e_start="57006" e_stop="57135"/>
          <exon e_start="57525" e_stop="57657"/>
          <exon e_start="58686" e_stop="58852"/>
          <exon e_start="59291" e_stop="59442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGCTGGATGGACATGCCATTCTGTTGGTTCCTATAAGTATGTTAGGCTTAAATTTTAAAGGACGACTACATGGTCAGATAGAAAAATTGCCCAACCATGTAAAAAAATCCCAACTGTTTGAGAGAAGAAATTCTAGATGAAAATGCCACTTCCTTTGTTGTTCACTTTGTTTATTTGCACAAAACACTAGCAATTAGATGTCATTTGCATTTGGTGTTCTATGATATATGTCTGCTCATTCGAACTCTGCCATTGTTGATGACTACAACATAGTAAATTGATAGGACCTCTGTTTCTCTGTTTAATATGCTTTCTCCTTTAATAGGAAAAAGCCAATGACAGCTGCTGCCTTTTCTGGAGATGGTTCTGTTCTGGCTGTAGCTGCAGAAAAAGTTATTACATTGTGGGATCCGGAGAGGAATATTCTTGTAGCTACAGTTGGGGAGAGTCTTGAGGTAAGTTCTTGGCATGCCAGTATTAATTTTACACTATTGACCTATAAAAAAATAACGATTTCACACTTCCTAGTTCAAATTTAAGTTGCTTGCCTTGGGGAAAGAAAGTTTTTCACCTAGTATTTGAAACCTTTTTACTTAAAGTGTTCTTTATGACTCACTTCTGAGTTGCTGTCTGGTAACTTCATTGGATGGCAAAGAAGTTAGCTGAGGGTTATCCTTTTTGTTAAACAATAAACGGAAATATGAGCACATAAAACAACCGAAAACAAATCTTGAAAATCTTAATTTACAGTTTTGATGCTTTCCTTGTGGCAATTTATACACCTTTATCATTCTTTCCGTATGTATACAATATTTTTCTCATTTGAACTGTTTTCTATGTGCAGCCAATCTCTTCCTTAGCATTTATTGGGAAGTCAGAGTATGTGGTAACCACATCGCAAGGTTCTAAGGCTCAAGTATCAGTGTGGAGCATGTCAAAGCTGTCTGTATCATGGTCTTACAAACTTAAGATAGAAGGTTTGTATATATCTCTTGTTTATCATACTTCGCCCCAATAAACTTTAAACAAATATAAACCACTTGCTTTTGGCAGCTTATGATAATTCTCTAATCTTATCATTTATTTCTAACGTTCTGCTTCTAGTTACTTAGAAAAAATGGATTAATATCAATGCAATTGTATGTCAGATACTGAAATTTGTTATTTAAGTGCAACTTGATCATTATAGTGCTAAATTCTCTATGTTCGGTGTTTTTAATGTCATGAAGCGTGTGCTTCACTTTTTCTTAAAGCCCCATGGATGCTTTTGTTTTTTGTGATTTTCTTCAAAACACTGGCATCGGAAGTGAATTGCCAACCATATTTCTCCATTTTTGAAGTTCTCATAGTTTTTGCTTCCGGAATTACGAGCTTGGCTCTTGAATTTGAATTGTTAGGTGTCATATGCAAATGGAAGTATGCAATCTTGCTAAAAAATTAACTGAAGCAAAGGGCTGGTGGATATATTGAATATGTAGTCTGGCCAATGGTAGATTATGCATTGTGATAGTCTTTTTATACCATGAATCTTGCTGCCCTTGTTATCAGAGTTGCATGGCTTGGAGTACAACTAGTAAGCTAATTCTCTTTCAAGCCAAACCCAGGACAGGTCTTTTGGGGAAATCTTAAGCTATCTTGCTAGTGCTAACAGTCCAATTTTGCTGCATTGGGTTTCCTATTAAAAAAAGAATTGCTGCTTTGGAATAGGAAAGCAGGAAATGAGTTGAGGAGACTCAGATTCTAAAATAAGTTTTCCTTAATTTGCACGTATATGTATAATCTAAAAAAGAATTGCTGCTTTGGAATAGGAAAGCAGGAAATGACTTGAGGAGACTGGGATTCTAAAATAAGTTTTCCTTTAATTTGCATGTATATGTATAATCTAACTAAAAGGTCTGAATAAGTCTAGCAGATTCATGGTGAACTTGTAGGCAGATGTGTCATACATTACTGGAAAATCTTTGTTAATGTTTCATCCTAAATAGTATCTTATTAATCACTGCAGCTGTAACTTGTGCGATGGATGATTCCTTGTTTGCCGTCCTGGCCCTTCTCCCAAAGCCAGTTGGACCTGTGATGTCTAATGAAGCCACAACTCTGGATGGCGATGGAGTGATCTTGTTATTCAGGGCCACAGATCATGTTCCCGTAGGGATCTGGTTTGTAAGAAAGGTATTGGCTCCTGTCTCAAATTTTGAGTTCTTGTTTCTTTCGAATGTTTTAGTTGGGAGCTTGATGTCAGTTACAATGGGGAATCGAATCACCTTGCACTCGTTTAGAGGTGGTAAGATCTTGATCTTATGGAGGCTGTTGTGAAACCGATGGGAGAAGGCTTGGACGTATAGCAAGATTAAAATAATTACATTCACCCTGACCTAGGTTTTGTCTGTCTTCATTCCCTTGTTTTTCCTGCACCCTGAGTACAGATGTTTTAGGACGCCCTTCTAATTTCCTGTCACCTTAACCCTTCTGACAGTTTCTTGTGCCTTTCTAATTTATTCATATATTGGGAGAGGTATCACATTTTCTAAGGTGAAAACTCTATTTATAGATGGGACGGGAACTGGACATCTTTACCTTTTTTTTGCATCTCATCCTTTTTCTTTACAGGCAAAAGGTGCTTCACTTGCTTTCATTCGCGGAAGTCCTAAGTCAGAGGATGATGTTACTGATGGCAGATCAGTGCAGTTGCTATTAGCTTACCTCAGCGTTGATCATGAATATATGCTTTTTGATCCACTCGACGGCCACACCCATATACA</genome_strand>
        <mrna_strand>AACGCTGGATGGACATGCCATTCTGTTGGTTCCTATAA.................................................................................................................................................................................................................................................................................................GAAAAAGCCAATGACAGCTGCTGCCTTTTCTGGAGATGGTTCTGTTCTGGCTGTAGCTGCAAAAAAAGTTATTACATTGTGGGATCCGGAGAGGAATATTCTTGTACCTACAGTTGGGGAGAGTCTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................CCAATCTCTTCCTTAGCATTTATTGGGAAGTCAGAGTATGTGGTAACCACATCGCAAGGTTCTAAGGCTCAAGTATCAGTGTGGAGCATGTCAAAGCTGACTGTATCATGGTCTTACAAACTTAAGATAGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAACTTGTGCGATGGATGATTCCTTGTTTGCCGTCCTGGCCCTTCTCCCAAAGCCAGTTGGACCTGTGATGTCTAATGAAGCCACAACTCTGGATGGCGATGGAGTGATCTTGTTATTCAGGGCCACAGATCATGTTCCCGTAAGGATCTGGTTTGTAAGAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGGTGCTTCACTTGCTTTCATTCGCGGAAGTCCTAAGTCAGAGGATGATGTTACTGATGGCAGATCACTGCAGTTGCTATTAACTTACCTCAGCGTTGATCATGAATATATGCTTTTTGATCCACTCGACGGCCACACCCATATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E207365" ref_strand="+" ref_description="SGN-E207365 [cLEC-36-O17]">
      <seq>acgctggatggacatgccattctgttggttcctataagaaaaagccaatgacagctgctgccttttctggagatggttctgttctggctgtagctgcagaaaaagttattacattgtgggatccggagaggaatattcttgtagctacagttggggagagtcttgagccaatctcttccttagcatttattgggaagtcagagtatgtggtaaccacatcgcaaggttctaaggctcaagtatcagtgtggagcatgtcaaagctgtctgtatcatggtcttacaaacttaagatagaagctgtaacttgtgcgatggatgattccttgtttgccgtcctggcccttctcccaaagccagttggacctgtgatgtctaatgaagccacaactctggatggcgatggagtgatcttgttattcagggccacagatcatgttcccgtagggatctggtttgtaagaaaggcaaaaggtgcttcacttgctttcattcgcggaagtcctaagtcagaggatgatgttactgatggcagatcagtgcagttgctattagcttacctcagcgttgatcatgaatatatgctttttgatccactcgacggccacacccatatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="56380" stop="59741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56680" g_stop="56716" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56717" i_stop="57005" i_length="289">
            <donor d_prob="0.545" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57006" g_stop="57135" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="167" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57136" i_stop="57524" i_length="389">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57525" g_stop="57657" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="300" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57658" i_stop="58685" i_length="1028">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58686" g_stop="58852" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="467" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58853" i_stop="59290" i_length="438">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59291" g_stop="59441" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="618" r_length="151" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E207365" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56680" e_stop="56716"/>
          <exon e_start="57006" e_stop="57135"/>
          <exon e_start="57525" e_stop="57657"/>
          <exon e_start="58686" e_stop="58852"/>
          <exon e_start="59291" e_stop="59441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGCTGGATGGACATGCCATTCTGTTGGTTCCTATAAGTATGTTAGGCTTAAATTTTAAAGGACGACTACATGGTCAGATAGAAAAATTGCCCAACCATGTAAAAAAATCCCAACTGTTTGAGAGAAGAAATTCTAGATGAAAATGCCACTTCCTTTGTTGTTCACTTTGTTTATTTGCACAAAACACTAGCAATTAGATGTCATTTGCATTTGGTGTTCTATGATATATGTCTGCTCATTCGAACTCTGCCATTGTTGATGACTACAACATAGTAAATTGATAGGACCTCTGTTTCTCTGTTTAATATGCTTTCTCCTTTAATAGGAAAAAGCCAATGACAGCTGCTGCCTTTTCTGGAGATGGTTCTGTTCTGGCTGTAGCTGCAGAAAAAGTTATTACATTGTGGGATCCGGAGAGGAATATTCTTGTAGCTACAGTTGGGGAGAGTCTTGAGGTAAGTTCTTGGCATGCCAGTATTAATTTTACACTATTGACCTATAAAAAAATAACGATTTCACACTTCCTAGTTCAAATTTAAGTTGCTTGCCTTGGGGAAAGAAAGTTTTTCACCTAGTATTTGAAACCTTTTTACTTAAAGTGTTCTTTATGACTCACTTCTGAGTTGCTGTCTGGTAACTTCATTGGATGGCAAAGAAGTTAGCTGAGGGTTATCCTTTTTGTTAAACAATAAACGGAAATATGAGCACATAAAACAACCGAAAACAAATCTTGAAAATCTTAATTTACAGTTTTGATGCTTTCCTTGTGGCAATTTATACACCTTTATCATTCTTTCCGTATGTATACAATATTTTTCTCATTTGAACTGTTTTCTATGTGCAGCCAATCTCTTCCTTAGCATTTATTGGGAAGTCAGAGTATGTGGTAACCACATCGCAAGGTTCTAAGGCTCAAGTATCAGTGTGGAGCATGTCAAAGCTGTCTGTATCATGGTCTTACAAACTTAAGATAGAAGGTTTGTATATATCTCTTGTTTATCATACTTCGCCCCAATAAACTTTAAACAAATATAAACCACTTGCTTTTGGCAGCTTATGATAATTCTCTAATCTTATCATTTATTTCTAACGTTCTGCTTCTAGTTACTTAGAAAAAATGGATTAATATCAATGCAATTGTATGTCAGATACTGAAATTTGTTATTTAAGTGCAACTTGATCATTATAGTGCTAAATTCTCTATGTTCGGTGTTTTTAATGTCATGAAGCGTGTGCTTCACTTTTTCTTAAAGCCCCATGGATGCTTTTGTTTTTTGTGATTTTCTTCAAAACACTGGCATCGGAAGTGAATTGCCAACCATATTTCTCCATTTTTGAAGTTCTCATAGTTTTTGCTTCCGGAATTACGAGCTTGGCTCTTGAATTTGAATTGTTAGGTGTCATATGCAAATGGAAGTATGCAATCTTGCTAAAAAATTAACTGAAGCAAAGGGCTGGTGGATATATTGAATATGTAGTCTGGCCAATGGTAGATTATGCATTGTGATAGTCTTTTTATACCATGAATCTTGCTGCCCTTGTTATCAGAGTTGCATGGCTTGGAGTACAACTAGTAAGCTAATTCTCTTTCAAGCCAAACCCAGGACAGGTCTTTTGGGGAAATCTTAAGCTATCTTGCTAGTGCTAACAGTCCAATTTTGCTGCATTGGGTTTCCTATTAAAAAAAGAATTGCTGCTTTGGAATAGGAAAGCAGGAAATGAGTTGAGGAGACTCAGATTCTAAAATAAGTTTTCCTTAATTTGCACGTATATGTATAATCTAAAAAAGAATTGCTGCTTTGGAATAGGAAAGCAGGAAATGACTTGAGGAGACTGGGATTCTAAAATAAGTTTTCCTTTAATTTGCATGTATATGTATAATCTAACTAAAAGGTCTGAATAAGTCTAGCAGATTCATGGTGAACTTGTAGGCAGATGTGTCATACATTACTGGAAAATCTTTGTTAATGTTTCATCCTAAATAGTATCTTATTAATCACTGCAGCTGTAACTTGTGCGATGGATGATTCCTTGTTTGCCGTCCTGGCCCTTCTCCCAAAGCCAGTTGGACCTGTGATGTCTAATGAAGCCACAACTCTGGATGGCGATGGAGTGATCTTGTTATTCAGGGCCACAGATCATGTTCCCGTAGGGATCTGGTTTGTAAGAAAGGTATTGGCTCCTGTCTCAAATTTTGAGTTCTTGTTTCTTTCGAATGTTTTAGTTGGGAGCTTGATGTCAGTTACAATGGGGAATCGAATCACCTTGCACTCGTTTAGAGGTGGTAAGATCTTGATCTTATGGAGGCTGTTGTGAAACCGATGGGAGAAGGCTTGGACGTATAGCAAGATTAAAATAATTACATTCACCCTGACCTAGGTTTTGTCTGTCTTCATTCCCTTGTTTTTCCTGCACCCTGAGTACAGATGTTTTAGGACGCCCTTCTAATTTCCTGTCACCTTAACCCTTCTGACAGTTTCTTGTGCCTTTCTAATTTATTCATATATTGGGAGAGGTATCACATTTTCTAAGGTGAAAACTCTATTTATAGATGGGACGGGAACTGGACATCTTTACCTTTTTTTTGCATCTCATCCTTTTTCTTTACAGGCAAAAGGTGCTTCACTTGCTTTCATTCGCGGAAGTCCTAAGTCAGAGGATGATGTTACTGATGGCAGATCAGTGCAGTTGCTATTAGCTTACCTCAGCGTTGATCATGAATATATGCTTTTTGATCCACTCGACGGCCACACCCATATAC</genome_strand>
        <mrna_strand>ACGCTGGATGGACATGCCATTCTGTTGGTTCCTATAA.................................................................................................................................................................................................................................................................................................GAAAAAGCCAATGACAGCTGCTGCCTTTTCTGGAGATGGTTCTGTTCTGGCTGTAGCTGCAGAAAAAGTTATTACATTGTGGGATCCGGAGAGGAATATTCTTGTAGCTACAGTTGGGGAGAGTCTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................CCAATCTCTTCCTTAGCATTTATTGGGAAGTCAGAGTATGTGGTAACCACATCGCAAGGTTCTAAGGCTCAAGTATCAGTGTGGAGCATGTCAAAGCTGTCTGTATCATGGTCTTACAAACTTAAGATAGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAACTTGTGCGATGGATGATTCCTTGTTTGCCGTCCTGGCCCTTCTCCCAAAGCCAGTTGGACCTGTGATGTCTAATGAAGCCACAACTCTGGATGGCGATGGAGTGATCTTGTTATTCAGGGCCACAGATCATGTTCCCGTAGGGATCTGGTTTGTAAGAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGGTGCTTCACTTGCTTTCATTCGCGGAAGTCCTAAGTCAGAGGATGATGTTACTGATGGCAGATCAGTGCAGTTGCTATTAGCTTACCTCAGCGTTGATCATGAATATATGCTTTTTGATCCACTCGACGGCCACACCCATATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E729162" ref_strand="+" ref_description="SGN-E729162 [LA20AG03]">
      <seq>tggacatgccattctgttggttcctataagaaaaagccaatgacagctgctgccttttctggagatggttctgttctggctgtagctgcagaaaaagttattacattgtgggatccggagaggaatattcttgtagctacagttggggagagtcttgagccaatctcttccttagcatttattgggaagtcagagtatgtggtaaccacatcgcaaggttctaaggctcaagtatcagtgtggagcatgtcaaagctgtctgtatcatggtcttacaaacttaagatagaagctgtaacttgtgcgatggatgattccttgtttgccgtcctggcccttctcccaaagccagttggacctgtgatgtctaatgaagccacaactctggatggcgatggagtgatcttgttattcagggccacagatcatgttcccgtagggatctggtttgtaagaaaggcaaaaggtgcttcacttgctttcattctcggaagtccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="56388" stop="59630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56688" g_stop="56716" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56717" i_stop="57005" i_length="289">
            <donor d_prob="0.545" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57006" g_stop="57135" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="159" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57136" i_stop="57524" i_length="389">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57525" g_stop="57657" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="292" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57658" i_stop="58685" i_length="1028">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58686" g_stop="58852" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="459" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58853" i_stop="59290" i_length="438">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59291" g_stop="59330" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="499" r_length="40" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E729162" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56688" e_stop="56716"/>
          <exon e_start="57006" e_stop="57135"/>
          <exon e_start="57525" e_stop="57657"/>
          <exon e_start="58686" e_stop="58852"/>
          <exon e_start="59291" e_stop="59330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACATGCCATTCTGTTGGTTCCTATAAGTATGTTAGGCTTAAATTTTAAAGGACGACTACATGGTCAGATAGAAAAATTGCCCAACCATGTAAAAAAATCCCAACTGTTTGAGAGAAGAAATTCTAGATGAAAATGCCACTTCCTTTGTTGTTCACTTTGTTTATTTGCACAAAACACTAGCAATTAGATGTCATTTGCATTTGGTGTTCTATGATATATGTCTGCTCATTCGAACTCTGCCATTGTTGATGACTACAACATAGTAAATTGATAGGACCTCTGTTTCTCTGTTTAATATGCTTTCTCCTTTAATAGGAAAAAGCCAATGACAGCTGCTGCCTTTTCTGGAGATGGTTCTGTTCTGGCTGTAGCTGCAGAAAAAGTTATTACATTGTGGGATCCGGAGAGGAATATTCTTGTAGCTACAGTTGGGGAGAGTCTTGAGGTAAGTTCTTGGCATGCCAGTATTAATTTTACACTATTGACCTATAAAAAAATAACGATTTCACACTTCCTAGTTCAAATTTAAGTTGCTTGCCTTGGGGAAAGAAAGTTTTTCACCTAGTATTTGAAACCTTTTTACTTAAAGTGTTCTTTATGACTCACTTCTGAGTTGCTGTCTGGTAACTTCATTGGATGGCAAAGAAGTTAGCTGAGGGTTATCCTTTTTGTTAAACAATAAACGGAAATATGAGCACATAAAACAACCGAAAACAAATCTTGAAAATCTTAATTTACAGTTTTGATGCTTTCCTTGTGGCAATTTATACACCTTTATCATTCTTTCCGTATGTATACAATATTTTTCTCATTTGAACTGTTTTCTATGTGCAGCCAATCTCTTCCTTAGCATTTATTGGGAAGTCAGAGTATGTGGTAACCACATCGCAAGGTTCTAAGGCTCAAGTATCAGTGTGGAGCATGTCAAAGCTGTCTGTATCATGGTCTTACAAACTTAAGATAGAAGGTTTGTATATATCTCTTGTTTATCATACTTCGCCCCAATAAACTTTAAACAAATATAAACCACTTGCTTTTGGCAGCTTATGATAATTCTCTAATCTTATCATTTATTTCTAACGTTCTGCTTCTAGTTACTTAGAAAAAATGGATTAATATCAATGCAATTGTATGTCAGATACTGAAATTTGTTATTTAAGTGCAACTTGATCATTATAGTGCTAAATTCTCTATGTTCGGTGTTTTTAATGTCATGAAGCGTGTGCTTCACTTTTTCTTAAAGCCCCATGGATGCTTTTGTTTTTTGTGATTTTCTTCAAAACACTGGCATCGGAAGTGAATTGCCAACCATATTTCTCCATTTTTGAAGTTCTCATAGTTTTTGCTTCCGGAATTACGAGCTTGGCTCTTGAATTTGAATTGTTAGGTGTCATATGCAAATGGAAGTATGCAATCTTGCTAAAAAATTAACTGAAGCAAAGGGCTGGTGGATATATTGAATATGTAGTCTGGCCAATGGTAGATTATGCATTGTGATAGTCTTTTTATACCATGAATCTTGCTGCCCTTGTTATCAGAGTTGCATGGCTTGGAGTACAACTAGTAAGCTAATTCTCTTTCAAGCCAAACCCAGGACAGGTCTTTTGGGGAAATCTTAAGCTATCTTGCTAGTGCTAACAGTCCAATTTTGCTGCATTGGGTTTCCTATTAAAAAAAGAATTGCTGCTTTGGAATAGGAAAGCAGGAAATGAGTTGAGGAGACTCAGATTCTAAAATAAGTTTTCCTTAATTTGCACGTATATGTATAATCTAAAAAAGAATTGCTGCTTTGGAATAGGAAAGCAGGAAATGACTTGAGGAGACTGGGATTCTAAAATAAGTTTTCCTTTAATTTGCATGTATATGTATAATCTAACTAAAAGGTCTGAATAAGTCTAGCAGATTCATGGTGAACTTGTAGGCAGATGTGTCATACATTACTGGAAAATCTTTGTTAATGTTTCATCCTAAATAGTATCTTATTAATCACTGCAGCTGTAACTTGTGCGATGGATGATTCCTTGTTTGCCGTCCTGGCCCTTCTCCCAAAGCCAGTTGGACCTGTGATGTCTAATGAAGCCACAACTCTGGATGGCGATGGAGTGATCTTGTTATTCAGGGCCACAGATCATGTTCCCGTAGGGATCTGGTTTGTAAGAAAGGTATTGGCTCCTGTCTCAAATTTTGAGTTCTTGTTTCTTTCGAATGTTTTAGTTGGGAGCTTGATGTCAGTTACAATGGGGAATCGAATCACCTTGCACTCGTTTAGAGGTGGTAAGATCTTGATCTTATGGAGGCTGTTGTGAAACCGATGGGAGAAGGCTTGGACGTATAGCAAGATTAAAATAATTACATTCACCCTGACCTAGGTTTTGTCTGTCTTCATTCCCTTGTTTTTCCTGCACCCTGAGTACAGATGTTTTAGGACGCCCTTCTAATTTCCTGTCACCTTAACCCTTCTGACAGTTTCTTGTGCCTTTCTAATTTATTCATATATTGGGAGAGGTATCACATTTTCTAAGGTGAAAACTCTATTTATAGATGGGACGGGAACTGGACATCTTTACCTTTTTTTTGCATCTCATCCTTTTTCTTTACAGGCAAAAGGTGCTTCACTTGCTTTCATTCGCGGAAGTCCTA</genome_strand>
        <mrna_strand>TGGACATGCCATTCTGTTGGTTCCTATAA.................................................................................................................................................................................................................................................................................................GAAAAAGCCAATGACAGCTGCTGCCTTTTCTGGAGATGGTTCTGTTCTGGCTGTAGCTGCAGAAAAAGTTATTACATTGTGGGATCCGGAGAGGAATATTCTTGTAGCTACAGTTGGGGAGAGTCTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................CCAATCTCTTCCTTAGCATTTATTGGGAAGTCAGAGTATGTGGTAACCACATCGCAAGGTTCTAAGGCTCAAGTATCAGTGTGGAGCATGTCAAAGCTGTCTGTATCATGGTCTTACAAACTTAAGATAGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAACTTGTGCGATGGATGATTCCTTGTTTGCCGTCCTGGCCCTTCTCCCAAAGCCAGTTGGACCTGTGATGTCTAATGAAGCCACAACTCTGGATGGCGATGGAGTGATCTTGTTATTCAGGGCCACAGATCATGTTCCCGTAGGGATCTGGTTTGTAAGAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGGTGCTTCACTTGCTTTCATTCTCGGAAGTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E338822" ref_strand="+" ref_description="SGN-E338822 [cTOE-21-P14]">
      <seq>ttacattgtgggatccggagaggaatattctgggggctacagttggggagagtcttgagccaatctcttccttagcatttattgggaagtcagagtatgtggtaaccacatcgcaaggttctaaggctcaagtatcagtgtggagcatgtcaaagctggctgtatcatggtcttacaaacttaagatagaagctgtaacttgtgcgacggatgattccttgtttgccgtcctggcccttctcccaaagccagttggacctgtgatgtctaatgaagccacaactctggatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="56777" stop="59085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57077" g_stop="57135" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57136" i_stop="57524" i_length="389">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57525" g_stop="57657" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="192" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57658" i_stop="58685" i_length="1028">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58686" g_stop="58785" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="292" r_length="100" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E338822" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57077" e_stop="57135"/>
          <exon e_start="57525" e_stop="57657"/>
          <exon e_start="58686" e_stop="58785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACATTGTGGGATCCGGAGAGGAATATTCTTGTAGCTACAGTTGGGGAGAGTCTTGAGGTAAGTTCTTGGCATGCCAGTATTAATTTTACACTATTGACCTATAAAAAAATAACGATTTCACACTTCCTAGTTCAAATTTAAGTTGCTTGCCTTGGGGAAAGAAAGTTTTTCACCTAGTATTTGAAACCTTTTTACTTAAAGTGTTCTTTATGACTCACTTCTGAGTTGCTGTCTGGTAACTTCATTGGATGGCAAAGAAGTTAGCTGAGGGTTATCCTTTTTGTTAAACAATAAACGGAAATATGAGCACATAAAACAACCGAAAACAAATCTTGAAAATCTTAATTTACAGTTTTGATGCTTTCCTTGTGGCAATTTATACACCTTTATCATTCTTTCCGTATGTATACAATATTTTTCTCATTTGAACTGTTTTCTATGTGCAGCCAATCTCTTCCTTAGCATTTATTGGGAAGTCAGAGTATGTGGTAACCACATCGCAAGGTTCTAAGGCTCAAGTATCAGTGTGGAGCATGTCAAAGCTGTCTGTATCATGGTCTTACAAACTTAAGATAGAAGGTTTGTATATATCTCTTGTTTATCATACTTCGCCCCAATAAACTTTAAACAAATATAAACCACTTGCTTTTGGCAGCTTATGATAATTCTCTAATCTTATCATTTATTTCTAACGTTCTGCTTCTAGTTACTTAGAAAAAATGGATTAATATCAATGCAATTGTATGTCAGATACTGAAATTTGTTATTTAAGTGCAACTTGATCATTATAGTGCTAAATTCTCTATGTTCGGTGTTTTTAATGTCATGAAGCGTGTGCTTCACTTTTTCTTAAAGCCCCATGGATGCTTTTGTTTTTTGTGATTTTCTTCAAAACACTGGCATCGGAAGTGAATTGCCAACCATATTTCTCCATTTTTGAAGTTCTCATAGTTTTTGCTTCCGGAATTACGAGCTTGGCTCTTGAATTTGAATTGTTAGGTGTCATATGCAAATGGAAGTATGCAATCTTGCTAAAAAATTAACTGAAGCAAAGGGCTGGTGGATATATTGAATATGTAGTCTGGCCAATGGTAGATTATGCATTGTGATAGTCTTTTTATACCATGAATCTTGCTGCCCTTGTTATCAGAGTTGCATGGCTTGGAGTACAACTAGTAAGCTAATTCTCTTTCAAGCCAAACCCAGGACAGGTCTTTTGGGGAAATCTTAAGCTATCTTGCTAGTGCTAACAGTCCAATTTTGCTGCATTGGGTTTCCTATTAAAAAAAGAATTGCTGCTTTGGAATAGGAAAGCAGGAAATGAGTTGAGGAGACTCAGATTCTAAAATAAGTTTTCCTTAATTTGCACGTATATGTATAATCTAAAAAAGAATTGCTGCTTTGGAATAGGAAAGCAGGAAATGACTTGAGGAGACTGGGATTCTAAAATAAGTTTTCCTTTAATTTGCATGTATATGTATAATCTAACTAAAAGGTCTGAATAAGTCTAGCAGATTCATGGTGAACTTGTAGGCAGATGTGTCATACATTACTGGAAAATCTTTGTTAATGTTTCATCCTAAATAGTATCTTATTAATCACTGCAGCTGTAACTTGTGCGATGGATGATTCCTTGTTTGCCGTCCTGGCCCTTCTCCCAAAGCCAGTTGGACCTGTGATGTCTAATGAAGCCACAACTCTGGATGG</genome_strand>
        <mrna_strand>TTACATTGTGGGATCCGGAGAGGAATATTCTGGGGGCTACAGTTGGGGAGAGTCTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................CCAATCTCTTCCTTAGCATTTATTGGGAAGTCAGAGTATGTGGTAACCACATCGCAAGGTTCTAAGGCTCAAGTATCAGTGTGGAGCATGTCAAAGCTGGCTGTATCATGGTCTTACAAACTTAAGATAGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAACTTGTGCGACGGATGATTCCTTGTTTGCCGTCCTGGCCCTTCTCCCAAAGCCAGTTGGACCTGTGATGTCTAATGAAGCCACAACTCTGGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E703779" ref_strand="+" ref_description="SGN-E703779 [FA22BG08]">
      <seq>ccacaactctggatggcgatggagtgatcttgttattcagggccacagatcatgttcccgtagggatctggtttgtaagaaaggcaaaaggtgcttcacttgctttcattcgcggaagtcctaagtcagaggatgatgttactgatggcagatcagtgcagttgctattagcttacctcagcgttgatcatgaatatatgctttttgatccactcgacggccacacccatatacataagataagccgaggaaatcttgctgatcttgaggaaacagggaagttcggatatgcatctctgtacggggacctaccagactttagcttagagagaaaacaagctgcatcgattacatcagtaccatcagaaagatattgggagacgctattcagtggaccatctcacaatcttcctcctcttgctaaattgtgttccacattcctggaatcattactacagaagagtagtgcagttgagtgattggcagtagtgtccggttgagctttgttgcaaggcagacttgctaatctatgctcatcgatgaaacgacaacattgttgttaggcttgatcccattgtagccgagagagagctgcctgacatgcacatgcacatgcacatagtaatactagctcgaaagtgtgaacagtggggtcgacttataatctggtctaagaacgagccagcccgttcagttaaagctttcgagttcaagaaaaagatgccctgatcgagtgggtttaaaattttggtagcacgatttgatgtgtcgtctggatattgaattttttgtagcttgcaacttattgagcctgcagggctaagtaggcatactcaatactgaatagatgttcttttttgacaatatttggtcatgtgttgtgtttaatttatacatttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="58470" stop="61210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58770" g_stop="58852" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58853" i_stop="59290" i_length="438">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59291" g_stop="59483" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="276" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59484" i_stop="60284" i_length="801">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60285" g_stop="60910" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="902" r_length="626" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E703779" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>902</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58770" e_stop="58852"/>
          <exon e_start="59291" e_stop="59483"/>
          <exon e_start="60285" e_stop="60910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACAACTCTGGATGGCGATGGAGTGATCTTGTTATTCAGGGCCACAGATCATGTTCCCGTAGGGATCTGGTTTGTAAGAAAGGTATTGGCTCCTGTCTCAAATTTTGAGTTCTTGTTTCTTTCGAATGTTTTAGTTGGGAGCTTGATGTCAGTTACAATGGGGAATCGAATCACCTTGCACTCGTTTAGAGGTGGTAAGATCTTGATCTTATGGAGGCTGTTGTGAAACCGATGGGAGAAGGCTTGGACGTATAGCAAGATTAAAATAATTACATTCACCCTGACCTAGGTTTTGTCTGTCTTCATTCCCTTGTTTTTCCTGCACCCTGAGTACAGATGTTTTAGGACGCCCTTCTAATTTCCTGTCACCTTAACCCTTCTGACAGTTTCTTGTGCCTTTCTAATTTATTCATATATTGGGAGAGGTATCACATTTTCTAAGGTGAAAACTCTATTTATAGATGGGACGGGAACTGGACATCTTTACCTTTTTTTTGCATCTCATCCTTTTTCTTTACAGGCAAAAGGTGCTTCACTTGCTTTCATTCGCGGAAGTCCTAAGTCAGAGGATGATGTTACTGATGGCAGATCAGTGCAGTTGCTATTAGCTTACCTCAGCGTTGATCATGAATATATGCTTTTTGATCCACTCGACGGCCACACCCATATACATAAGATAAGCCGAGGAAATCTTGCTGATCTTGAGGAAACAGGTGTGTCCCGTCTTCTCTGCCTAAGTTCATCTGACACTAAGCTTTTATGTATTTCAGTGTCTGGTGTCTATTAATTTGGGGATGTACATGGGCCTTTTTTGGGTTATTTTATGTGATAGGTTGCTTCAGAATACTTTGGATTGGATCAATATACCAAAGTACTTGAAATAAACCTTGTTTTTAAAAACTTTATAATGGGTGCTACAAGCCTTAAAATGACGGGTCCAGAGGCACAAAGATGTATGGTTGCTGAATGCGTTGTGATAAGAAGTCCACTACTACAACTCATTACTAAGTTGGATCAGCTATATATTAATCCTCATTTCATCATTTAAACTCATATTCAATCATCATCTTAACAAATAAAATACGACATGTCCTGTGATAACCTTACGAGAGAAAGGGATTGGGTTTGATGTATTTGTTCTCCTCTGCCCACAAGGTCCTTGTTTCTTCATGGCATGATTGTCAGATCAAGCACATATTCTTGAAAATCTGTACCAAAATCTGTGGATTGATGATATTTAAGAGGAAACAAGCTCTATCTCTAGAACATATATTCGCTGGTAAAATCAGATGATGCATTATTTATAGCTTTAACAAGGAGGTGGGGGGTTTGGATAAGAGGGCTAAGGGGAAGGGCTGCATTAGGGAATTGAACACCTACCCGACTGAGCTGTAGGGCAATTCTCTGCAGGTGAAATATCCTGATACTTTATAATAATCTTCAGAAAACAGTATTTCTTTTTTTAAAAAAGATAATTGTCATGACTGATGAAACTATATGCTATCTATTTGCAGGGAAGTTCGGATATGCATCTCTGTACGGGGACCTACCAGACTTTAGCTTAGAGAGAAAACAAGCTGCATCGATCACATCAGTACCATCAGAAAGATATTGGGAGACGCTATTCAGTGGACCATCTCACAATCTTCCTCCTCTTGCTAAATTGTGTTCCACATTCCTGGAATCATTACTACAGAAGAGTAGTGCAGTTGAGTGATTGGCAGTAGTGTCCGGTTGAGCTTTGTTGCAAGGCAGACTTGCTAATCTATGCTCATCGATGAAACGACAACATTGTTGTTAGGCTTGATCCCATTGTAGCCGAGAGAGAGCTGCCTGACATGCACATGCACATGCACATAGTAATACTAGCTCGAAAGTGTGAACAGTGGGGTCGACTTATAATCTGGTCTAAGAACGAGCCAGCCCGTTCAGTTAAAGCTTTCGAGTTCAAGAAAAAGATGCCCTGATCGAGTGGGTTTAAAATTTTGGTAGCACGATTTGATGTGTCGTCTGGATATTGAATTTTTTGTAGCTTGCAACTTATTGAGCCTGCAGGGCTAAGTAGGCATACTCAATACTGAATAGATGTTCTTTTTTGACAATATTTGGTCATGTGTTGTGTTTAATTATAACATTTATA</genome_strand>
        <mrna_strand>CCACAACTCTGGATGGCGATGGAGTGATCTTGTTATTCAGGGCCACAGATCATGTTCCCGTAGGGATCTGGTTTGTAAGAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGGTGCTTCACTTGCTTTCATTCGCGGAAGTCCTAAGTCAGAGGATGATGTTACTGATGGCAGATCAGTGCAGTTGCTATTAGCTTACCTCAGCGTTGATCATGAATATATGCTTTTTGATCCACTCGACGGCCACACCCATATACATAAGATAAGCCGAGGAAATCTTGCTGATCTTGAGGAAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTTCGGATATGCATCTCTGTACGGGGACCTACCAGACTTTAGCTTAGAGAGAAAACAAGCTGCATCGATTACATCAGTACCATCAGAAAGATATTGGGAGACGCTATTCAGTGGACCATCTCACAATCTTCCTCCTCTTGCTAAATTGTGTTCCACATTCCTGGAATCATTACTACAGAAGAGTAGTGCAGTTGAGTGATTGGCAGTAGTGTCCGGTTGAGCTTTGTTGCAAGGCAGACTTGCTAATCTATGCTCATCGATGAAACGACAACATTGTTGTTAGGCTTGATCCCATTGTAGCCGAGAGAGAGCTGCCTGACATGCACATGCACATGCACATAGTAATACTAGCTCGAAAGTGTGAACAGTGGGGTCGACTTATAATCTGGTCTAAGAACGAGCCAGCCCGTTCAGTTAAAGCTTTCGAGTTCAAGAAAAAGATGCCCTGATCGAGTGGGTTTAAAATTTTGGTAGCACGATTTGATGTGTCGTCTGGATATTGAATTTTTTGTAGCTTGCAACTTATTGAGCCTGCAGGGCTAAGTAGGCATACTCAATACTGAATAGATGTTCTTTTTTGACAATATTTGGTCATGTGTTGTGTTTAATTTATACATTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E269331" ref_strand="+" ref_description="SGN-E269331 [cLEM-18-P9]">
      <seq>ggaaatgtcggtcatgctatgcaattagttgataaaatggaggaatatggatatccaacaaatactgtgacttacaattctcttataagaggactttgtatgagggggaacctgaacaagagcctgcaatttgtcgaaaagttgattcagaaagggttggtaccaaatgcatatacgtactctatattgcttgaggctagttataaagaaaaaggggttaatgaagcaatgttacttttagacaatattattgccaagggtggaaagcctaatttggttagttacaatgttctcttaactgggctgtgcaaagaaggaagaatagatgaagctaaacaattctttagaaacttgccatcaaaagggtttaatcctaacgttgtcagctataatatcttgttgaggagcttgtgttttgaaggacgttgggaagaagcgaatgagtttctggcagagatggttggagaagatcgttctccatcgattgtaacgtacaatatattgatcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="62903" stop="64012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63203" g_stop="63712" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E269331" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63203" e_stop="63712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATGTCGGTCATGCTATGCAATTAGTTGATAAAATGGAGGAATATGGATATCCAACAAATACTGTGACTTACAATTCTCTTATAAGAGGACTTTGTATGAGGGGGAACCTGAACAAGAGCCTGCAATTTGTCGAAAAGTTGATTCAGAAAGGGTTGGTACCAAATGCATATACGTACTCTATATTGCTTGAGGCTAGTTATAAAGAAAAAGGGGTTAATGAAGCAATGTTACTTTTAGACAATATTATTGCCAAGGGTGGAAAGCCTAATTTGGTTAGTTACAATGTTCTCTTAACTGGGCTGTGCAAAGAAGGAAGAATAGATGAAGCTAAACAATTCTTTAGAAACTTGCCATCAAAAGGGTTTAATCCTAACGTTGTCAGCTATAATATCTTGTTGAGGAGCTTGTGTTTTGAAGGACGTTGGGAGGAAGCGAATGAGTTTCTGGCAGAGATGGTTGGAGAAGATCGTTCTCCATCGATTGTAACGTACAATATATTGATCAGT</genome_strand>
        <mrna_strand>GGAAATGTCGGTCATGCTATGCAATTAGTTGATAAAATGGAGGAATATGGATATCCAACAAATACTGTGACTTACAATTCTCTTATAAGAGGACTTTGTATGAGGGGGAACCTGAACAAGAGCCTGCAATTTGTCGAAAAGTTGATTCAGAAAGGGTTGGTACCAAATGCATATACGTACTCTATATTGCTTGAGGCTAGTTATAAAGAAAAAGGGGTTAATGAAGCAATGTTACTTTTAGACAATATTATTGCCAAGGGTGGAAAGCCTAATTTGGTTAGTTACAATGTTCTCTTAACTGGGCTGTGCAAAGAAGGAAGAATAGATGAAGCTAAACAATTCTTTAGAAACTTGCCATCAAAAGGGTTTAATCCTAACGTTGTCAGCTATAATATCTTGTTGAGGAGCTTGTGTTTTGAAGGACGTTGGGAAGAAGCGAATGAGTTTCTGGCAGAGATGGTTGGAGAAGATCGTTCTCCATCGATTGTAACGTACAATATATTGATCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E551503" ref_strand="+" ref_description="SGN-E551503 [TUS-11-E14]">
      <seq>cctgcaatttgtccaaaagttcattcagaaagggttggtaccaaatgcatatacgtactctatattgcttgaggctagttataaagaaaaaggggttaatgaagcaatgttacttttagacaatattattgccaagggtggaaagcctaatttggttagttacaatgttctcttaactgggctgtgcggagaaggaagaatagatgaagctaaacaattctttagaaacttgccatcaaaagggtttaatcctaacgttgtcagctataatatcttgttgaggagcttgtgttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="63025" stop="63920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63325" g_stop="63620" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E551503" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63325" e_stop="63620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGCAATTTGTCGAAAAGTTGATTCAGAAAGGGTTGGTACCAAATGCATATACGTACTCTATATTGCTTGAGGCTAGTTATAAAGAAAAAGGGGTTAATGAAGCAATGTTACTTTTAGACAATATTATTGCCAAGGGTGGAAAGCCTAATTTGGTTAGTTACAATGTTCTCTTAACTGGGCTGTGCAAAGAAGGAAGAATAGATGAAGCTAAACAATTCTTTAGAAACTTGCCATCAAAAGGGTTTAATCCTAACGTTGTCAGCTATAATATCTTGTTGAGGAGCTTGTGTTTTG</genome_strand>
        <mrna_strand>CCTGCAATTTGTCCAAAAGTTCATTCAGAAAGGGTTGGTACCAAATGCATATACGTACTCTATATTGCTTGAGGCTAGTTATAAAGAAAAAGGGGTTAATGAAGCAATGTTACTTTTAGACAATATTATTGCCAAGGGTGGAAAGCCTAATTTGGTTAGTTACAATGTTCTCTTAACTGGGCTGTGCGGAGAAGGAAGAATAGATGAAGCTAAACAATTCTTTAGAAACTTGCCATCAAAAGGGTTTAATCCTAACGTTGTCAGCTATAATATCTTGTTGAGGAGCTTGTGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E688226" ref_strand="+" ref_description="SGN-E688226 [t3_tus_11_e14]">
      <seq>cctgcaatttgtccaaaagctcattcagaaagggttggtaccaaatgcatatacgtactctatattgcttgaggctagttataaagaaaaaggggttaatgaagcaatgttacttttagacaatattattgccaagggtggaaagcctaatttggttagttacaatgttctcttaactgggctgtgcaaagaaggaagaatagatgaagctaaacaattctttagaaacttgccatcaaaagggtttaatcctaacgttgtcagctataatatcttgttgaggagcttgtgttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="63025" stop="63920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63325" g_stop="63620" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E688226" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63325" e_stop="63620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGCAATTTGTCGAAAAGTTGATTCAGAAAGGGTTGGTACCAAATGCATATACGTACTCTATATTGCTTGAGGCTAGTTATAAAGAAAAAGGGGTTAATGAAGCAATGTTACTTTTAGACAATATTATTGCCAAGGGTGGAAAGCCTAATTTGGTTAGTTACAATGTTCTCTTAACTGGGCTGTGCAAAGAAGGAAGAATAGATGAAGCTAAACAATTCTTTAGAAACTTGCCATCAAAAGGGTTTAATCCTAACGTTGTCAGCTATAATATCTTGTTGAGGAGCTTGTGTTTTG</genome_strand>
        <mrna_strand>CCTGCAATTTGTCCAAAAGCTCATTCAGAAAGGGTTGGTACCAAATGCATATACGTACTCTATATTGCTTGAGGCTAGTTATAAAGAAAAAGGGGTTAATGAAGCAATGTTACTTTTAGACAATATTATTGCCAAGGGTGGAAAGCCTAATTTGGTTAGTTACAATGTTCTCTTAACTGGGCTGTGCAAAGAAGGAAGAATAGATGAAGCTAAACAATTCTTTAGAAACTTGCCATCAAAAGGGTTTAATCCTAACGTTGTCAGCTATAATATCTTGTTGAGGAGCTTGTGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E351030" ref_strand="+" ref_description="SGN-E351030 [cTOS-6-A16]">
      <seq>gagcaagcatgagagcaaagtggaagaagaagcgtatgaggagactgaaaaggaagcgcagaaagatgagacagagatctaagtagagcagcagcaggggtccagatgcctactgtggtttcttggttgaaactgctgctttttataatcgctgtccatctctgtggcagctccaaagaatggaggttgtccgttgtttgaagctgtgcattagttaatttactatgttctatggaggagcttagttttagttttaagcattggtagtaagaatgttggtttgtgttggatatatgtgagttatattgaatgttctctttcaagctgacgtttttaagaggatttctatttgtttggggttacatttcatttgaataaattttggctttgaacgttattacttcatgtgatgttctgatgatgtacaagtgtgaagtgaaaccctggttggttttgatctagtatgatcattcttgtgcttgcttggttcaagaatatcaaggcgtattgaatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="67434" stop="65193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67134" g_stop="67115" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67114" i_stop="65987" i_length="1128">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65986" g_stop="65505" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="502" r_length="482" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="515" polyA_stop="524"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E351030" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67134" e_stop="67115"/>
          <exon e_start="65986" e_stop="65505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAAGCATGAGAGCAAAGGTCTGTTTTCTGATCCTAAGTGCATTTCGTGTTATCTTTTTCGGTTTTGTAAGCTCGAAATTGAAAGTTCTGTTGCTACTCAGTTATGTTTTTGCTTAAACTTCATATTTGCAATTGTTATTGTGTTTGCTATGATGGATTAAAGGATCTATTGACTATTGTTTTTGTTGAATTTGTTCTTACACATCGTATTTTCAGTTGCATTATCTGATTACTTGAGGATAACTAGTGTGTCATGCTTGGAGATTTATGACACATGATTCATGGTGATCGTAATTGTTGGAGATGATTTGTAGACTTTGAGAAACTATAAACCATATAAGGTAGAATGGAAGCTCACAAGAGGATATATTGTTTAAGATCCTCGTATAGGAATGCTTGAAGTGGGAGGTTTACATACTTTGATATGTACCACACTTGCTCAAATACTCCTTTACAATTTTAATCTACAACAATAGTGATTATAGGGAGTAGGGATACAAGTTAGCTATCAAACATCACCTAAGCTATTTGGGCAATTTGTCGAACACAGTACGAGTCCAAGGTCAATTACGATGGTATATTCCCACAATCTGAGAATAGTAGCTATGGTGCTTTGGTTCAAATTGTGTTTGGGGTGTGAAATTTATTTTGCCCCAGCGGACCCATTTTCTAAACTTGCATAGTTTTCTTGATCTTAACCAAAAAGGTTGGGTAAGGTGTTATCTTATGCATTGAATTTTATATTAATATGCACAGTTGCTTTACAAGTGTACTTGTTTTTACCTTATCAAACACCTATCAATAAAATATTCTAGTATTTGTTTGAAGTTGGACCGTGCTGGGTCTTTCGAGATCTAGTGTTGGGGTAGAAATCTTCTGAAATCTTGTGTCTTCCCTGTCTTCCATGGAATATATCTTTTCCATATGAATGTTCTGAAAAGTGTGGCCTTTAAGATTTAGAGGAAAGATAAGACAACGTGATATGTTTTTTAGCTTCTTTAGATGACAACAAAGTGTTTGTGTCAAAACTCAGTTGGCACTGCAGTATGCCATCAACCTGTTTTGCGAACAGGGAGTTTGCTAAGGTTTTGTTTTCTTGTGCCATTGTAGTGGTACTAGCGACTAATGTTTTTATTTTAAATGCAGTGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTGAATAAATTTTGGCTTTGAACGTTATTACTTCATGTGATGTTCTGATGATGTACAAGTGTGAAGTGAAACCCTGGTTGGTTTTGATCTAGTATGATCATTCTTGTGCTTGCTTGGTTCAAGAATATCAAG</genome_strand>
        <mrna_strand>GAGCAAGCATGAGAGCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTGAATAAATTTTGGCTTTGAACGTTATTACTTCATGTGATGTTCTGATGATGTACAAGTGTGAAGTGAAACCCTGGTTGGTTTTGATCTAGTATGATCATTCTTGTGCTTGCTTGGTTCAAGAATATCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E351154" ref_strand="+" ref_description="SGN-E351154 [cTOS-6-A19]">
      <seq>gagcaagcatgagagcaaagtggaagaagaagcgtatgaggagactgaaaaggaagcgcagaaagatgagacagagatctaagtagagcagcagcaggggtccagatgcctactgtggtttcttggttgaaactgctgctttttataatcgctgtccatctctgtggcagctccaaagaatggaggttgtccgttgtttgaagctgtgcattagttaatttactatgttctatggaggagcttagttttagttttaagcattggtagtaagaatgttggtttgtgttggatatatgtgagttatattgaatgttctctttcaagctgacgtttttaagaggatttctatttgtttggggttacatttcatttgaataaattttggctttgaacgttattacttcatgtgatgttctgatgatgtacaagtgtgaagtgaaaccctggttggttttgatctagtatgatcattcttgtgcttgcttggttcaagaatatcaaggcgtattgaatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="67434" stop="65193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67134" g_stop="67115" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67114" i_stop="65987" i_length="1128">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65986" g_stop="65505" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="502" r_length="482" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="515" polyA_stop="524"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E351154" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67134" e_stop="67115"/>
          <exon e_start="65986" e_stop="65505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAAGCATGAGAGCAAAGGTCTGTTTTCTGATCCTAAGTGCATTTCGTGTTATCTTTTTCGGTTTTGTAAGCTCGAAATTGAAAGTTCTGTTGCTACTCAGTTATGTTTTTGCTTAAACTTCATATTTGCAATTGTTATTGTGTTTGCTATGATGGATTAAAGGATCTATTGACTATTGTTTTTGTTGAATTTGTTCTTACACATCGTATTTTCAGTTGCATTATCTGATTACTTGAGGATAACTAGTGTGTCATGCTTGGAGATTTATGACACATGATTCATGGTGATCGTAATTGTTGGAGATGATTTGTAGACTTTGAGAAACTATAAACCATATAAGGTAGAATGGAAGCTCACAAGAGGATATATTGTTTAAGATCCTCGTATAGGAATGCTTGAAGTGGGAGGTTTACATACTTTGATATGTACCACACTTGCTCAAATACTCCTTTACAATTTTAATCTACAACAATAGTGATTATAGGGAGTAGGGATACAAGTTAGCTATCAAACATCACCTAAGCTATTTGGGCAATTTGTCGAACACAGTACGAGTCCAAGGTCAATTACGATGGTATATTCCCACAATCTGAGAATAGTAGCTATGGTGCTTTGGTTCAAATTGTGTTTGGGGTGTGAAATTTATTTTGCCCCAGCGGACCCATTTTCTAAACTTGCATAGTTTTCTTGATCTTAACCAAAAAGGTTGGGTAAGGTGTTATCTTATGCATTGAATTTTATATTAATATGCACAGTTGCTTTACAAGTGTACTTGTTTTTACCTTATCAAACACCTATCAATAAAATATTCTAGTATTTGTTTGAAGTTGGACCGTGCTGGGTCTTTCGAGATCTAGTGTTGGGGTAGAAATCTTCTGAAATCTTGTGTCTTCCCTGTCTTCCATGGAATATATCTTTTCCATATGAATGTTCTGAAAAGTGTGGCCTTTAAGATTTAGAGGAAAGATAAGACAACGTGATATGTTTTTTAGCTTCTTTAGATGACAACAAAGTGTTTGTGTCAAAACTCAGTTGGCACTGCAGTATGCCATCAACCTGTTTTGCGAACAGGGAGTTTGCTAAGGTTTTGTTTTCTTGTGCCATTGTAGTGGTACTAGCGACTAATGTTTTTATTTTAAATGCAGTGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTGAATAAATTTTGGCTTTGAACGTTATTACTTCATGTGATGTTCTGATGATGTACAAGTGTGAAGTGAAACCCTGGTTGGTTTTGATCTAGTATGATCATTCTTGTGCTTGCTTGGTTCAAGAATATCAAG</genome_strand>
        <mrna_strand>GAGCAAGCATGAGAGCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTGAATAAATTTTGGCTTTGAACGTTATTACTTCATGTGATGTTCTGATGATGTACAAGTGTGAAGTGAAACCCTGGTTGGTTTTGATCTAGTATGATCATTCTTGTGCTTGCTTGGTTCAAGAATATCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E338668" ref_strand="+" ref_description="SGN-E338668 [cTOE-15-F12]">
      <seq>gagggtaaagagagagtcggcggtgaattttgagcaagccatgagagccaaagtggaagaagaagccgtatgaggagactgaaaaggaagccgccagaaagatgagacagagatctaagtagagcagcagcaggggtccagatgcctacctgtggtttcttggttgaaactgctgctttttataatcgctgtccatctctgtggcagctccaaagaatggaggttgtccgttgtttgaagctgtgcattagttaatttacctatgttctatggaggagcttagttttagttttaagcattggtagtaagaatgttggtttgtgttggatatatgtgagttatattgaatgttctctttcaagctgacgtttttaagaggatttctatttgtttggggttaccatttcatttgaataaattttggctttgaacgttattacttcatgtgatgttctgatgatgtacaagtgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="67464" stop="65273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67167" g_stop="67115" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.887"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67114" i_stop="65987" i_length="1128">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.991" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65986" g_stop="65573" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="473" r_length="420" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E338668" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67167" e_stop="67115"/>
          <exon e_start="65986" e_stop="65573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGAGGTAAAGAGAGAGTCGGCGGTGAATTTTGAGCAAG-CATGAGAG-CAAAGGTCTGTTTTCTGATCCTAAGTGCATTTCGTGTTATCTTTTTCGGTTTTGTAAGCTCGAAATTGAAAGTTCTGTTGCTACTCAGTTATGTTTTTGCTTAAACTTCATATTTGCAATTGTTATTGTGTTTGCTATGATGGATTAAAGGATCTATTGACTATTGTTTTTGTTGAATTTGTTCTTACACATCGTATTTTCAGTTGCATTATCTGATTACTTGAGGATAACTAGTGTGTCATGCTTGGAGATTTATGACACATGATTCATGGTGATCGTAATTGTTGGAGATGATTTGTAGACTTTGAGAAACTATAAACCATATAAGGTAGAATGGAAGCTCACAAGAGGATATATTGTTTAAGATCCTCGTATAGGAATGCTTGAAGTGGGAGGTTTACATACTTTGATATGTACCACACTTGCTCAAATACTCCTTTACAATTTTAATCTACAACAATAGTGATTATAGGGAGTAGGGATACAAGTTAGCTATCAAACATCACCTAAGCTATTTGGGCAATTTGTCGAACACAGTACGAGTCCAAGGTCAATTACGATGGTATATTCCCACAATCTGAGAATAGTAGCTATGGTGCTTTGGTTCAAATTGTGTTTGGGGTGTGAAATTTATTTTGCCCCAGCGGACCCATTTTCTAAACTTGCATAGTTTTCTTGATCTTAACCAAAAAGGTTGGGTAAGGTGTTATCTTATGCATTGAATTTTATATTAATATGCACAGTTGCTTTACAAGTGTACTTGTTTTTACCTTATCAAACACCTATCAATAAAATATTCTAGTATTTGTTTGAAGTTGGACCGTGCTGGGTCTTTCGAGATCTAGTGTTGGGGTAGAAATCTTCTGAAATCTTGTGTCTTCCCTGTCTTCCATGGAATATATCTTTTCCATATGAATGTTCTGAAAAGTGTGGCCTTTAAGATTTAGAGGAAAGATAAGACAACGTGATATGTTTTTTAGCTTCTTTAGATGACAACAAAGTGTTTGTGTCAAAACTCAGTTGGCACTGCAGTATGCCATCAACCTGTTTTGCGAACAGGGAGTTTGCTAAGGTTTTGTTTTCTTGTGCCATTGTAGTGGTACTAGCGACTAATGTTTTTATTTTAAATGCAGTGGAAGAAGAAG-CGTATGAGGAGACTGAAAAGGAAG-CG-CAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTA-CTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTA-CTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTA-CATTTCATTTGAATAAATTTTGGCTTTGAACGTTATTACTTCATGTGATGTTCTGATGATGTACAAGTGTGA</genome_strand>
        <mrna_strand>GA-G-GGTAAAGAGAGAGTCGGCGGTGAATTTTGAGCAAGCCATGAGAGCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGAAGAAGCCGTATGAGGAGACTGAAAAGGAAGCCGCCAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACCTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACCTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACCATTTCATTTGAATAAATTTTGGCTTTGAACGTTATTACTTCATGTGATGTTCTGATGATGTACAAGTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E339640" ref_strand="+" ref_description="SGN-E339640 [cTOE-16-P12]">
      <seq>gaagacgaggtaaagagagagtcggcggtgaattttgagcaagcatgagagcaaagtggaagaagaagcgtatgaggagactgaaaaggaagcgcagaaagatgagacagagatctaagtagagcagcagcaggggtccagatgcctactgtggtttcttggttgaaactgctgctttttataatcgctgtccatctctgtggcagctccaaagaatggaggttgtccgttgtttgaagctgtgcattagttaatttactatgttctatggaggagcttagttttagttttaagcattggtagtaagaatgttggtttgtgttggatatatgtgagttatattgaatgttctctttcaagctgacgtttttaagaggatttctatttgtttggggttacatttcatttgaataaattttggctttgaacgttattacttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="67470" stop="65302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67170" g_stop="67115" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67114" i_stop="65987" i_length="1128">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65986" g_stop="65603" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="440" r_length="384" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="441" polyA_stop="451"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E339640" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67170" e_stop="67115"/>
          <exon e_start="65986" e_stop="65603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGACGAGGTAAAGAGAGAGTCGGCGGTGAATTTTGAGCAAGCATGAGAGCAAAGGTCTGTTTTCTGATCCTAAGTGCATTTCGTGTTATCTTTTTCGGTTTTGTAAGCTCGAAATTGAAAGTTCTGTTGCTACTCAGTTATGTTTTTGCTTAAACTTCATATTTGCAATTGTTATTGTGTTTGCTATGATGGATTAAAGGATCTATTGACTATTGTTTTTGTTGAATTTGTTCTTACACATCGTATTTTCAGTTGCATTATCTGATTACTTGAGGATAACTAGTGTGTCATGCTTGGAGATTTATGACACATGATTCATGGTGATCGTAATTGTTGGAGATGATTTGTAGACTTTGAGAAACTATAAACCATATAAGGTAGAATGGAAGCTCACAAGAGGATATATTGTTTAAGATCCTCGTATAGGAATGCTTGAAGTGGGAGGTTTACATACTTTGATATGTACCACACTTGCTCAAATACTCCTTTACAATTTTAATCTACAACAATAGTGATTATAGGGAGTAGGGATACAAGTTAGCTATCAAACATCACCTAAGCTATTTGGGCAATTTGTCGAACACAGTACGAGTCCAAGGTCAATTACGATGGTATATTCCCACAATCTGAGAATAGTAGCTATGGTGCTTTGGTTCAAATTGTGTTTGGGGTGTGAAATTTATTTTGCCCCAGCGGACCCATTTTCTAAACTTGCATAGTTTTCTTGATCTTAACCAAAAAGGTTGGGTAAGGTGTTATCTTATGCATTGAATTTTATATTAATATGCACAGTTGCTTTACAAGTGTACTTGTTTTTACCTTATCAAACACCTATCAATAAAATATTCTAGTATTTGTTTGAAGTTGGACCGTGCTGGGTCTTTCGAGATCTAGTGTTGGGGTAGAAATCTTCTGAAATCTTGTGTCTTCCCTGTCTTCCATGGAATATATCTTTTCCATATGAATGTTCTGAAAAGTGTGGCCTTTAAGATTTAGAGGAAAGATAAGACAACGTGATATGTTTTTTAGCTTCTTTAGATGACAACAAAGTGTTTGTGTCAAAACTCAGTTGGCACTGCAGTATGCCATCAACCTGTTTTGCGAACAGGGAGTTTGCTAAGGTTTTGTTTTCTTGTGCCATTGTAGTGGTACTAGCGACTAATGTTTTTATTTTAAATGCAGTGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTGAATAAATTTTGGCTTTGAACGTTATTACTTC</genome_strand>
        <mrna_strand>GAAGACGAGGTAAAGAGAGAGTCGGCGGTGAATTTTGAGCAAGCATGAGAGCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTGAATAAATTTTGGCTTTGAACGTTATTACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E302689" ref_strand="+" ref_description="SGN-E302689 [cLEY-1-E19]">
      <seq>tttttttttttttaacgttcaaagccaaaatttattcaaatgaaatgtaaccccaaacaaatagaaatcctcttaaaaacgtcagcttgaaagagaacattcaatataactcacatatatccaacacaaaccaacattcttactaccaatgcttaaaactaaaactaagctcctccatagaacatagtaaattaactaatgcacagcttcaaacaacggacaacctccattctttggagctgccacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="65310" stop="66145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65607" g_stop="65845" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="248" r_length="239" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E302689" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65607" e_stop="65845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATAACGTTCAAAGCCAAAATTTATTCAAATGAAATGTAACCCCAAACAAATAGAAATCCTCTTAAAAACGTCAGCTTGAAAGAGAACATTCAATATAACTCACATATATCCAACACAAACCAACATTCTTACTACCAATGCTTAAAACTAAAACTAAGCTCCTCCATAGAACATAGTAAATTAACTAATGCACAGCTTCAAACAACGGACAACCTCCATTCTTTGGAGCTGCCACAG</genome_strand>
        <mrna_strand>TTTTAACGTTCAAAGCCAAAATTTATTCAAATGAAATGTAACCCCAAACAAATAGAAATCCTCTTAAAAACGTCAGCTTGAAAGAGAACATTCAATATAACTCACATATATCCAACACAAACCAACATTCTTACTACCAATGCTTAAAACTAAAACTAAGCTCCTCCATAGAACATAGTAAATTAACTAATGCACAGCTTCAAACAACGGACAACCTCCATTCTTTGGAGCTGCCACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E734195" ref_strand="+" ref_description="SGN-E734195 [LB12AB06]">
      <seq>cggaagacgaggtaaagagagagtcggcggtgaattttgagcaagcatgagagcaaagtggaagaagaagcgtatgaggagactgaaaaggaagcgcagaaagatgagacagagatctaagtagagcagcagcaggggtccagatgcctactgtggtttcttggttgaaactgctgctttttataatcgctgtccatctctgtggcagctccaaagaatggaggttgtccgttgtttgaagctgtgcattagttaatttactatgttctatggaggagcttagttttagttttaagcattggtagtaagaatgttggtttgtgttggatatatgtgagttatattgaatgttctctttcaagctgacgtttttaagaggatttctatttgtttggggttacatttcatttgaataaattttggctttgaacgttaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="67472" stop="65310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67172" g_stop="67115" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67114" i_stop="65987" i_length="1128">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65986" g_stop="65611" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="434" r_length="376" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="435" polyA_stop="462"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E734195" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67172" e_stop="67115"/>
          <exon e_start="65986" e_stop="65611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAAGACGAGGTAAAGAGAGAGTCGGCGGTGAATTTTGAGCAAGCATGAGAGCAAAGGTCTGTTTTCTGATCCTAAGTGCATTTCGTGTTATCTTTTTCGGTTTTGTAAGCTCGAAATTGAAAGTTCTGTTGCTACTCAGTTATGTTTTTGCTTAAACTTCATATTTGCAATTGTTATTGTGTTTGCTATGATGGATTAAAGGATCTATTGACTATTGTTTTTGTTGAATTTGTTCTTACACATCGTATTTTCAGTTGCATTATCTGATTACTTGAGGATAACTAGTGTGTCATGCTTGGAGATTTATGACACATGATTCATGGTGATCGTAATTGTTGGAGATGATTTGTAGACTTTGAGAAACTATAAACCATATAAGGTAGAATGGAAGCTCACAAGAGGATATATTGTTTAAGATCCTCGTATAGGAATGCTTGAAGTGGGAGGTTTACATACTTTGATATGTACCACACTTGCTCAAATACTCCTTTACAATTTTAATCTACAACAATAGTGATTATAGGGAGTAGGGATACAAGTTAGCTATCAAACATCACCTAAGCTATTTGGGCAATTTGTCGAACACAGTACGAGTCCAAGGTCAATTACGATGGTATATTCCCACAATCTGAGAATAGTAGCTATGGTGCTTTGGTTCAAATTGTGTTTGGGGTGTGAAATTTATTTTGCCCCAGCGGACCCATTTTCTAAACTTGCATAGTTTTCTTGATCTTAACCAAAAAGGTTGGGTAAGGTGTTATCTTATGCATTGAATTTTATATTAATATGCACAGTTGCTTTACAAGTGTACTTGTTTTTACCTTATCAAACACCTATCAATAAAATATTCTAGTATTTGTTTGAAGTTGGACCGTGCTGGGTCTTTCGAGATCTAGTGTTGGGGTAGAAATCTTCTGAAATCTTGTGTCTTCCCTGTCTTCCATGGAATATATCTTTTCCATATGAATGTTCTGAAAAGTGTGGCCTTTAAGATTTAGAGGAAAGATAAGACAACGTGATATGTTTTTTAGCTTCTTTAGATGACAACAAAGTGTTTGTGTCAAAACTCAGTTGGCACTGCAGTATGCCATCAACCTGTTTTGCGAACAGGGAGTTTGCTAAGGTTTTGTTTTCTTGTGCCATTGTAGTGGTACTAGCGACTAATGTTTTTATTTTAAATGCAGTGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTGAATAAATTTTGGCTTTGAACGTT</genome_strand>
        <mrna_strand>CGGAAGACGAGGTAAAGAGAGAGTCGGCGGTGAATTTTGAGCAAGCATGAGAGCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTGAATAAATTTTGGCTTTGAACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E716767" ref_strand="+" ref_description="SGN-E716767 [FB17DH07]">
      <seq>cgagtacgaggtaaagagagagtcggcggtgaattttgagcaagcatgagagcaaagtggaagaagaagcgtatgaggagactgaaaaggaagcgcagaaagatgagacagagatctaagtagagcagcagcaggggtccagatgcctactgtggtttcttggttgaaactgctgctttttataatcgctgtccatctctgtggcagctccaaagaatggaggttgtccgttgtttgaagctgtgcattagttaatttactatgttctatggaggagcttagttttagttttaagcattggtagtaagaatgttggtttgtgttggatatatgtgagttatattgaatgttctctttcaagctgacgtttttaagaggatttctatttgtttggggttacatttcatttgaataaattttggctttgaacgttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="67468" stop="65310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67171" g_stop="67115" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67114" i_stop="65987" i_length="1128">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65986" g_stop="65611" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="433" r_length="376" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="434" polyA_stop="447"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E716767" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67171" e_stop="67115"/>
          <exon e_start="65986" e_stop="65611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGACGAGGTAAAGAGAGAGTCGGCGGTGAATTTTGAGCAAGCATGAGAGCAAAGGTCTGTTTTCTGATCCTAAGTGCATTTCGTGTTATCTTTTTCGGTTTTGTAAGCTCGAAATTGAAAGTTCTGTTGCTACTCAGTTATGTTTTTGCTTAAACTTCATATTTGCAATTGTTATTGTGTTTGCTATGATGGATTAAAGGATCTATTGACTATTGTTTTTGTTGAATTTGTTCTTACACATCGTATTTTCAGTTGCATTATCTGATTACTTGAGGATAACTAGTGTGTCATGCTTGGAGATTTATGACACATGATTCATGGTGATCGTAATTGTTGGAGATGATTTGTAGACTTTGAGAAACTATAAACCATATAAGGTAGAATGGAAGCTCACAAGAGGATATATTGTTTAAGATCCTCGTATAGGAATGCTTGAAGTGGGAGGTTTACATACTTTGATATGTACCACACTTGCTCAAATACTCCTTTACAATTTTAATCTACAACAATAGTGATTATAGGGAGTAGGGATACAAGTTAGCTATCAAACATCACCTAAGCTATTTGGGCAATTTGTCGAACACAGTACGAGTCCAAGGTCAATTACGATGGTATATTCCCACAATCTGAGAATAGTAGCTATGGTGCTTTGGTTCAAATTGTGTTTGGGGTGTGAAATTTATTTTGCCCCAGCGGACCCATTTTCTAAACTTGCATAGTTTTCTTGATCTTAACCAAAAAGGTTGGGTAAGGTGTTATCTTATGCATTGAATTTTATATTAATATGCACAGTTGCTTTACAAGTGTACTTGTTTTTACCTTATCAAACACCTATCAATAAAATATTCTAGTATTTGTTTGAAGTTGGACCGTGCTGGGTCTTTCGAGATCTAGTGTTGGGGTAGAAATCTTCTGAAATCTTGTGTCTTCCCTGTCTTCCATGGAATATATCTTTTCCATATGAATGTTCTGAAAAGTGTGGCCTTTAAGATTTAGAGGAAAGATAAGACAACGTGATATGTTTTTTAGCTTCTTTAGATGACAACAAAGTGTTTGTGTCAAAACTCAGTTGGCACTGCAGTATGCCATCAACCTGTTTTGCGAACAGGGAGTTTGCTAAGGTTTTGTTTTCTTGTGCCATTGTAGTGGTACTAGCGACTAATGTTTTTATTTTAAATGCAGTGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTGAATAAATTTTGGCTTTGAACGTT</genome_strand>
        <mrna_strand>CGAGTACGAGGTAAAGAGAGAGTCGGCGGTGAATTTTGAGCAAGCATGAGAGCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTGAATAAATTTTGGCTTTGAACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E337581" ref_strand="+" ref_description="SGN-E337581 [cTOE-11-D1]">
      <seq>acgaggtaaagagagagtcggcggtgaattttgagcaagcatgagagcaaagtggaagaagaagcgtatgaggagactgaaaaggaagcgcagaaagatgagacagagatctaagtagagcagcagcaggggtccagatgcctactgtggtttcttggttgaaactgctgctttttataatcgctgtccatctctgtggcagctccaaagaatggaggttgtccgttgtttgaagctgtgcattagttaatttactatgttctatggaggagcttagttttagttttaagcattggtagtaagaatgttggtttgtgttggatatatgtgagttatattgaatgttctctttcaagctgacgtttttaagaggatttctatttgtttggggttacatttcatttgaataaatttttggctttgaacgtttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="67466" stop="65307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67166" g_stop="67115" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67114" i_stop="65987" i_length="1128">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65986" g_stop="65611" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="429" r_length="377" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="431" polyA_stop="440"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E337581" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67166" e_stop="67115"/>
          <exon e_start="65986" e_stop="65611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAGGTAAAGAGAGAGTCGGCGGTGAATTTTGAGCAAGCATGAGAGCAAAGGTCTGTTTTCTGATCCTAAGTGCATTTCGTGTTATCTTTTTCGGTTTTGTAAGCTCGAAATTGAAAGTTCTGTTGCTACTCAGTTATGTTTTTGCTTAAACTTCATATTTGCAATTGTTATTGTGTTTGCTATGATGGATTAAAGGATCTATTGACTATTGTTTTTGTTGAATTTGTTCTTACACATCGTATTTTCAGTTGCATTATCTGATTACTTGAGGATAACTAGTGTGTCATGCTTGGAGATTTATGACACATGATTCATGGTGATCGTAATTGTTGGAGATGATTTGTAGACTTTGAGAAACTATAAACCATATAAGGTAGAATGGAAGCTCACAAGAGGATATATTGTTTAAGATCCTCGTATAGGAATGCTTGAAGTGGGAGGTTTACATACTTTGATATGTACCACACTTGCTCAAATACTCCTTTACAATTTTAATCTACAACAATAGTGATTATAGGGAGTAGGGATACAAGTTAGCTATCAAACATCACCTAAGCTATTTGGGCAATTTGTCGAACACAGTACGAGTCCAAGGTCAATTACGATGGTATATTCCCACAATCTGAGAATAGTAGCTATGGTGCTTTGGTTCAAATTGTGTTTGGGGTGTGAAATTTATTTTGCCCCAGCGGACCCATTTTCTAAACTTGCATAGTTTTCTTGATCTTAACCAAAAAGGTTGGGTAAGGTGTTATCTTATGCATTGAATTTTATATTAATATGCACAGTTGCTTTACAAGTGTACTTGTTTTTACCTTATCAAACACCTATCAATAAAATATTCTAGTATTTGTTTGAAGTTGGACCGTGCTGGGTCTTTCGAGATCTAGTGTTGGGGTAGAAATCTTCTGAAATCTTGTGTCTTCCCTGTCTTCCATGGAATATATCTTTTCCATATGAATGTTCTGAAAAGTGTGGCCTTTAAGATTTAGAGGAAAGATAAGACAACGTGATATGTTTTTTAGCTTCTTTAGATGACAACAAAGTGTTTGTGTCAAAACTCAGTTGGCACTGCAGTATGCCATCAACCTGTTTTGCGAACAGGGAGTTTGCTAAGGTTTTGTTTTCTTGTGCCATTGTAGTGGTACTAGCGACTAATGTTTTTATTTTAAATGCAGTGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTGAATAAA-TTTTGGCTTTGAACGTT</genome_strand>
        <mrna_strand>ACGAGGTAAAGAGAGAGTCGGCGGTGAATTTTGAGCAAGCATGAGAGCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTGAATAAATTTTTGGCTTTGAACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E302688" ref_strand="+" ref_description="SGN-E302688 [cLEY-1-E19]">
      <seq>tgtggcagctccaaagaatggaggttgtccgttgtttgaagctgtgcattagttaatttactatgttctatggaggagcttagttttagttttaagcattggtagtaagaatgttggtttgtgttggatatatgtgagttatattgaatgttctctttcaagctgacgtttttaagaggatttctatttgtttggggttacatttcatttgaataaattttggctttgaacgttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="66144" stop="65310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65844" g_stop="65611" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="235" polyA_stop="248"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E302688" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>234</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65844" e_stop="65611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTGAATAAATTTTGGCTTTGAACGTT</genome_strand>
        <mrna_strand>TGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTGAATAAATTTTGGCTTTGAACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E350258" ref_strand="+" ref_description="SGN-E350258 [cTOS-4-N3]">
      <seq>gacgaggtaaagagagagtcggcggtgaattttgagcaagcatgagagcaaagtggaagaagaagcgtatgaggagactgaaaaggaagcgcagaaagatgagacagagatctaagtagagcagcagcaggggtccagatgcctactgtggtttcttggttgaaactgctgctttttataatcgctgtccatctctgtggcagctccaaagaatggaggttgtccgttgtttgaagctgtgcattagttaatttactatgttctatggaggagcttagttttagttttaagcattggtagtaagaatgttggtttgtgttggatatatgtgagttatattgaatgttctctttcaagctgacgtttttaagaggatttctatttgtttggggttacatttcatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="67467" stop="65334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67167" g_stop="67115" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67114" i_stop="65987" i_length="1128">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65986" g_stop="65634" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="406" r_length="353" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E350258" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67167" e_stop="67115"/>
          <exon e_start="65986" e_stop="65634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGAGGTAAAGAGAGAGTCGGCGGTGAATTTTGAGCAAGCATGAGAGCAAAGGTCTGTTTTCTGATCCTAAGTGCATTTCGTGTTATCTTTTTCGGTTTTGTAAGCTCGAAATTGAAAGTTCTGTTGCTACTCAGTTATGTTTTTGCTTAAACTTCATATTTGCAATTGTTATTGTGTTTGCTATGATGGATTAAAGGATCTATTGACTATTGTTTTTGTTGAATTTGTTCTTACACATCGTATTTTCAGTTGCATTATCTGATTACTTGAGGATAACTAGTGTGTCATGCTTGGAGATTTATGACACATGATTCATGGTGATCGTAATTGTTGGAGATGATTTGTAGACTTTGAGAAACTATAAACCATATAAGGTAGAATGGAAGCTCACAAGAGGATATATTGTTTAAGATCCTCGTATAGGAATGCTTGAAGTGGGAGGTTTACATACTTTGATATGTACCACACTTGCTCAAATACTCCTTTACAATTTTAATCTACAACAATAGTGATTATAGGGAGTAGGGATACAAGTTAGCTATCAAACATCACCTAAGCTATTTGGGCAATTTGTCGAACACAGTACGAGTCCAAGGTCAATTACGATGGTATATTCCCACAATCTGAGAATAGTAGCTATGGTGCTTTGGTTCAAATTGTGTTTGGGGTGTGAAATTTATTTTGCCCCAGCGGACCCATTTTCTAAACTTGCATAGTTTTCTTGATCTTAACCAAAAAGGTTGGGTAAGGTGTTATCTTATGCATTGAATTTTATATTAATATGCACAGTTGCTTTACAAGTGTACTTGTTTTTACCTTATCAAACACCTATCAATAAAATATTCTAGTATTTGTTTGAAGTTGGACCGTGCTGGGTCTTTCGAGATCTAGTGTTGGGGTAGAAATCTTCTGAAATCTTGTGTCTTCCCTGTCTTCCATGGAATATATCTTTTCCATATGAATGTTCTGAAAAGTGTGGCCTTTAAGATTTAGAGGAAAGATAAGACAACGTGATATGTTTTTTAGCTTCTTTAGATGACAACAAAGTGTTTGTGTCAAAACTCAGTTGGCACTGCAGTATGCCATCAACCTGTTTTGCGAACAGGGAGTTTGCTAAGGTTTTGTTTTCTTGTGCCATTGTAGTGGTACTAGCGACTAATGTTTTTATTTTAAATGCAGTGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTG</genome_strand>
        <mrna_strand>GACGAGGTAAAGAGAGAGTCGGCGGTGAATTTTGAGCAAGCATGAGAGCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E303524" ref_strand="+" ref_description="SGN-E303524 [cLEX-2-N17]">
      <seq>gaagacgaggtaaagagagagtcggcggtgaattttgagcaagcatgagagcaaagtggaagaagaagcgtatgaggagactgaaaaggaagcgcagaaagatgagaccagagatctaagtagagcagcagcaggggtccagatgcctactgtggtttcttggttgaaactgctgctttttataatcgctgtccatctctgtggcagctccaaagaatggaggttgtccgttgtttgaagctgtgcattagttaatttactatgttctatggaggagcttagttttagttttaagcattggtagtaagaatgttggtttgtgttggatatatgtgagttatattgaatgttctctttcaagctgacgtttttaagaggaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="67470" stop="65365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67170" g_stop="67115" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67114" i_stop="65987" i_length="1128">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65986" g_stop="65666" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="378" r_length="322" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="379" polyA_stop="393"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E303524" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67170" e_stop="67115"/>
          <exon e_start="65986" e_stop="65666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGACGAGGTAAAGAGAGAGTCGGCGGTGAATTTTGAGCAAGCATGAGAGCAAAGGTCTGTTTTCTGATCCTAAGTGCATTTCGTGTTATCTTTTTCGGTTTTGTAAGCTCGAAATTGAAAGTTCTGTTGCTACTCAGTTATGTTTTTGCTTAAACTTCATATTTGCAATTGTTATTGTGTTTGCTATGATGGATTAAAGGATCTATTGACTATTGTTTTTGTTGAATTTGTTCTTACACATCGTATTTTCAGTTGCATTATCTGATTACTTGAGGATAACTAGTGTGTCATGCTTGGAGATTTATGACACATGATTCATGGTGATCGTAATTGTTGGAGATGATTTGTAGACTTTGAGAAACTATAAACCATATAAGGTAGAATGGAAGCTCACAAGAGGATATATTGTTTAAGATCCTCGTATAGGAATGCTTGAAGTGGGAGGTTTACATACTTTGATATGTACCACACTTGCTCAAATACTCCTTTACAATTTTAATCTACAACAATAGTGATTATAGGGAGTAGGGATACAAGTTAGCTATCAAACATCACCTAAGCTATTTGGGCAATTTGTCGAACACAGTACGAGTCCAAGGTCAATTACGATGGTATATTCCCACAATCTGAGAATAGTAGCTATGGTGCTTTGGTTCAAATTGTGTTTGGGGTGTGAAATTTATTTTGCCCCAGCGGACCCATTTTCTAAACTTGCATAGTTTTCTTGATCTTAACCAAAAAGGTTGGGTAAGGTGTTATCTTATGCATTGAATTTTATATTAATATGCACAGTTGCTTTACAAGTGTACTTGTTTTTACCTTATCAAACACCTATCAATAAAATATTCTAGTATTTGTTTGAAGTTGGACCGTGCTGGGTCTTTCGAGATCTAGTGTTGGGGTAGAAATCTTCTGAAATCTTGTGTCTTCCCTGTCTTCCATGGAATATATCTTTTCCATATGAATGTTCTGAAAAGTGTGGCCTTTAAGATTTAGAGGAAAGATAAGACAACGTGATATGTTTTTTAGCTTCTTTAGATGACAACAAAGTGTTTGTGTCAAAACTCAGTTGGCACTGCAGTATGCCATCAACCTGTTTTGCGAACAGGGAGTTTGCTAAGGTTTTGTTTTCTTGTGCCATTGTAGTGGTACTAGCGACTAATGTTTTTATTTTAAATGCAGTGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGA-CAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGG</genome_strand>
        <mrna_strand>GAAGACGAGGTAAAGAGAGAGTCGGCGGTGAATTTTGAGCAAGCATGAGAGCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACCAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E283667" ref_strand="+" ref_description="SGN-E283667 [cLES-1-D16]">
      <seq>agagagtcggcggtgaattttgagcaagcatgagagcaaagtggaagaagaagcgtatgaggagactgaaaaggaagcgcagaaagatgagacagagatctaagtatagcagcagcaagggtccagatgcctactgtgggttcttggctgaaactgctgctttctataatcgctgtccatctctgtggcagctccaaagaatggaggttgtccgttgtttgaagctgtgcattagataatttactatgttctatggaggagcttagacttagctttaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="67455" stop="65447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67155" g_stop="67115" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67114" i_stop="65987" i_length="1128">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65986" g_stop="65747" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="281" r_length="240" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E283667" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>281</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67155" e_stop="67115"/>
          <exon e_start="65986" e_stop="65747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGTCGGCGGTGAATTTTGAGCAAGCATGAGAGCAAAGGTCTGTTTTCTGATCCTAAGTGCATTTCGTGTTATCTTTTTCGGTTTTGTAAGCTCGAAATTGAAAGTTCTGTTGCTACTCAGTTATGTTTTTGCTTAAACTTCATATTTGCAATTGTTATTGTGTTTGCTATGATGGATTAAAGGATCTATTGACTATTGTTTTTGTTGAATTTGTTCTTACACATCGTATTTTCAGTTGCATTATCTGATTACTTGAGGATAACTAGTGTGTCATGCTTGGAGATTTATGACACATGATTCATGGTGATCGTAATTGTTGGAGATGATTTGTAGACTTTGAGAAACTATAAACCATATAAGGTAGAATGGAAGCTCACAAGAGGATATATTGTTTAAGATCCTCGTATAGGAATGCTTGAAGTGGGAGGTTTACATACTTTGATATGTACCACACTTGCTCAAATACTCCTTTACAATTTTAATCTACAACAATAGTGATTATAGGGAGTAGGGATACAAGTTAGCTATCAAACATCACCTAAGCTATTTGGGCAATTTGTCGAACACAGTACGAGTCCAAGGTCAATTACGATGGTATATTCCCACAATCTGAGAATAGTAGCTATGGTGCTTTGGTTCAAATTGTGTTTGGGGTGTGAAATTTATTTTGCCCCAGCGGACCCATTTTCTAAACTTGCATAGTTTTCTTGATCTTAACCAAAAAGGTTGGGTAAGGTGTTATCTTATGCATTGAATTTTATATTAATATGCACAGTTGCTTTACAAGTGTACTTGTTTTTACCTTATCAAACACCTATCAATAAAATATTCTAGTATTTGTTTGAAGTTGGACCGTGCTGGGTCTTTCGAGATCTAGTGTTGGGGTAGAAATCTTCTGAAATCTTGTGTCTTCCCTGTCTTCCATGGAATATATCTTTTCCATATGAATGTTCTGAAAAGTGTGGCCTTTAAGATTTAGAGGAAAGATAAGACAACGTGATATGTTTTTTAGCTTCTTTAGATGACAACAAAGTGTTTGTGTCAAAACTCAGTTGGCACTGCAGTATGCCATCAACCTGTTTTGCGAACAGGGAGTTTGCTAAGGTTTTGTTTTCTTGTGCCATTGTAGTGGTACTAGCGACTAATGTTTTTATTTTAAATGCAGTGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCA</genome_strand>
        <mrna_strand>AGAGAGTCGGCGGTGAATTTTGAGCAAGCATGAGAGCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTATAGCAGCAGCAAGGGTCCAGATGCCTACTGTGGGTTCTTGGCTGAAACTGCTGCTTTCTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGATAATTTACTATGTTCTATGGAGGAGCTTAGACTTAGCTTTAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E276867" ref_strand="+" ref_description="SGN-E276867 [cLEN-14-L1]">
      <seq>tgacgagtaccgggaaatacaatgtcgaacgaagccccagcaaaaccaccgtgcgacacaccggagcatgactcagccggcgtcaacggctttgacatcaacaacgacacttcaagtactgccttagcaaagggcctttccactataatatcttctctaatccgggaatttgatgatagtgctgccgccacctctcgtagtcaagatcaactctcttccaccctcgatcgtctcactggagagcttgacaagctgctggaagatgccccattgccttttatcatgcagcatgctgccagaatttctggtgttaggaaaagaattacatcgttgaactcacttttgaagtctatacagaggcgtcttgataatatcgaccacacattatctgctggtttgttacatgagaagtcctcaggggatggtgggcgagaccatgagaatcataagtcttcattgaagagttcatgatcaaaatccaggagaagattcaaatgtccttcgcagtgcccgtagaaatctccttctgattgcaagcatttggaactgattcagccttgtggtgtaaaaggtagtctgatgcatgaggttataacacactgcgttctgaaaagatgttcttttacctgtcaaaaaattgcatggtttcagctctgtgccatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="68748" stop="72559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69048" g_stop="69288" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69289" i_stop="70586" i_length="1298">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70587" g_stop="70751" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="406" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70752" i_stop="71038" i_length="287">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71039" g_stop="71096" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="464" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71097" i_stop="72058" i_length="962">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72059" g_stop="72259" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="665" r_length="201" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E276867" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69048" e_stop="69288"/>
          <exon e_start="70587" e_stop="70751"/>
          <exon e_start="71039" e_stop="71096"/>
          <exon e_start="72059" e_stop="72259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACGAGTACCGGGAAATACAATGTCGAACGAAGCCCCAGCAAAACCACCGTGCGACACACCGGAGCATGACTCAGCCGGCGTCAACGGCTTTGACATCAACAACGACACTTCAAGTACTGCCTTAGCAAAGGGCCTTTCCACTATAATATCTTCTCTAATCCGGGAATTTGATGATAGTGCTGCCGCCACCTCTCGTAGTCAAGATCAACTCTCTTCCACCCTCGATCGTCTCACTGGAGGTAGAACTCATCACCTTCTTCTAATTGTATTCAATGGACTTAATTTCGACATTTATTTTTGATGCTCTGTTTAATTGGATTTAGGGATCCATTTACTGTTTTACATTTCATTTTTGTTACCAATTGTTATTGAATAGTTTAAAGTGGGAAGCTTTGACAAGAGGGGCTTGTTCGGATGATAAGCACCCTCCACCTTTAATCCTAGAGTTGTGGGTTCAGTTACCAGTGGAGCAAAACGGGTGGGAGCTCCAGGGGATGGATTATAAAAATAAAAAGTAGGAAGATTTGCAAAAAGAATTGTTCTATTGACGGCACATCTTAGAAAGAGTCCAAATAATCTTTACTAAGATGGTTGTTCCAACTGAATAGCTGAATGGTTGAGTCACAGGAGTAACAATCCAGCTGCAATATGATGTGCAGGCTTACCCAAACAGATGTGGTTGCAATGTATCAAGTTGTTCAATGGATTGGTCGAGATGAGCATAAGATGCCGTCACACCATTGTCATGTTAGAGAAATCACCAGGGTTGGGGCGTGTGTGTGTGCTGGGAGGCAATAGCTGTATATGTAATTTTGTTTGCACCTTCTAGTTTCATTTGCAGCTCACCATTGTTTCCTTGAGAATGAATACAATCACTTTCTTCTTCTTTTTTGCTGTTGCTATATGATATATTATAAGTTCTCATTGAACCATAAAGCTAAAGGAGAAAAAAAAAAGAAATACACACTGCTCTCGTAGATATTAACAGAAGGCTAATAACATTGTTGGCTGTACAAAGGTCAATCTTTATTCCATACATTTTGAAAAGTCAAATTAACTTAGTGGGCTATATTTCAGCGTGTGAAAAAAAAGAGAGTTTAAGATATCTTGAAATAATATTAACTTGCCACTTTTTTAAAAATAGATATCTTGAAATAACTTTTTGGCTCCTTCCTCTCCCTTTGGTATGTACAGTGAGACTTTTGTGTTCTCTATGTAAAGTAGAGATGTCGTCCGTGCTCCTTTATGCCTGATTATTAGTGGCGACAATTGCATTGGAAAAAGGATGTAAAACTGTATTTCCTTAAGTTTTGTTACTACATGTCGATTGCATCAGACCAATCTAATTGCCATGGGCTAACTAACTATTACATGCTCTACAGATGCAAGAGAAATCACCGTTCTACATAATATCTAAAAGTATTAAAAAGGATATTAGGAATAAAGATCCAGGTTGCTAAGTCTGGTGTTTAATCGAAGATTCTGCTTTTATGTGATTAATTTTCTTGTTCTTTCTTGGTCCTGCTTCTACCTGCAGAGCTTGACAAGCTGCTGGAAGATGCCCCATTGCCTTTTATCATGCAGCATGCTGCCAGAATTTCTGGTGTTAGGAAAAGAATTACATCGTTGAACTCACTTTTGAAGTCTATACAGAGGCGTCTTGATAATATCGACCACACATTATCTGCTGGTTTGTTACATGGTACACTTATTTTTTTCTTGATACATCTTATGTCAAGTTTTTCATGGAAATTCAATTAGGATGTGTGCAGGTTCTTAATACTTTGTACTCCGCTATGAATGCTTTACTTGTGTAATCTTTCAAATAGTTCTGTACATGAATTTGGTATTATGTCCAAGCTGTAGGACATAAAAGTTCAATGGAACAGTAATTCCATAATATATCTTGGAAATTAATTTTTCCACGGGGTATATAGCGTTTTGAAGGAAGCTTATATCCACTAATGCTTTTGTTGTATCTTTTTGCAGAGAAGTCCTCAGGGGATGGTGGGCGAGACCATGAGAATCATAAGTCTTCATTGAAGAGGTAATGCTGTTTCTGGTGTTCGATGAACATATAATTTTCTCACCTGGGATTTACGTGAGTGAGAACATTTACGAGCTGTAGGAGTTTGATTTGTGATATATTTCCTAGTCTCTTGATGCAAAAAGGTAATCGAGGTTCATCGGGTCATATCTACTTATCCCTTAAACATTTGTTAGGATCTAGAACACGAAATTCTAGTGCATTAGTTGATTTTTCTATGAACCTCTTACTTTTTAAAAACAGTTTTCCTCCCCAAGAGGACATCAGAATCTAGTATGATAGACAGACATAGCTGAGCGTCAATAAGCCAGTGATCCACACAGTCTCCGCTTATTTGTACAGTTATGGAAGCAGGAGGAACAGGTTACTTCCACTGTTTGGTGGAGAAAGTTACTGGTAAATCTTGACCTCCCATTCTGAGATGCCTATCTCACTCGATAAAGAAAAAAGAAAAAACACTCCATTCTTATCTTCAGAGCAGTAATTCTAAGTAAATGTCTCAGTAGTTTTGGCCAAGTTGGGAAGTTTAACATGTAAAACAAGACAACGAGGGTCCAAAATAGGAGGCATATCATGCATAATAAGTGATACCCACACCTGGAAGAGATTACAGGTAGAGCCTGCTAACATAAACTTTTTCCAGACATATTTGGAATCAATGATATCTTCTGAGTTCTTACTATCTAACCTTTCCCAGTGTGTGTCAAATGAATTAATTCAGTGTAATCATTTTGTCTTGTGTTTCAATATCTTGGTGCTGCAATTGGATTGCTGAGAAAATCATTTGTAATTTGGAGCATTATTGAAGTGTGTAATATTACTGAAGCATGCAACATGTGATAATCTTTAGATGAGCTAAATCTTTTCGAGGTGTTGCCTTCATAATGTCTAAAAGGAAGTGTATGAGTTTTATGTCATTGACTAGCCTCTAAATCAGTTACTATGTGGTTGTTTTGGGGCAGTTCATGATCAAAATCCAGGAGAAGATTCAAATGTCCTTCGCAGTGCCCGTAGAAATCTCCTTCTGATTGCAAGCATTTGGAACTGATTCAGCCTTGTGGTGTAAAAGGTAGTCTGATGCATGAGGTTATAACACACTGCGTTCTGAAAAGATGTTCTTTTACCTGTCAAAAAATTGCATGGTTTCAGCTCTGTGCCATACT</genome_strand>
        <mrna_strand>TGACGAGTACCGGGAAATACAATGTCGAACGAAGCCCCAGCAAAACCACCGTGCGACACACCGGAGCATGACTCAGCCGGCGTCAACGGCTTTGACATCAACAACGACACTTCAAGTACTGCCTTAGCAAAGGGCCTTTCCACTATAATATCTTCTCTAATCCGGGAATTTGATGATAGTGCTGCCGCCACCTCTCGTAGTCAAGATCAACTCTCTTCCACCCTCGATCGTCTCACTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGACAAGCTGCTGGAAGATGCCCCATTGCCTTTTATCATGCAGCATGCTGCCAGAATTTCTGGTGTTAGGAAAAGAATTACATCGTTGAACTCACTTTTGAAGTCTATACAGAGGCGTCTTGATAATATCGACCACACATTATCTGCTGGTTTGTTACATG...............................................................................................................................................................................................................................................................................................AGAAGTCCTCAGGGGATGGTGGGCGAGACCATGAGAATCATAAGTCTTCATTGAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATGATCAAAATCCAGGAGAAGATTCAAATGTCCTTCGCAGTGCCCGTAGAAATCTCCTTCTGATTGCAAGCATTTGGAACTGATTCAGCCTTGTGGTGTAAAAGGTAGTCTGATGCATGAGGTTATAACACACTGCGTTCTGAAAAGATGTTCTTTTACCTGTCAAAAAATTGCATGGTTTCAGCTCTGTGCCATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E274726" ref_strand="+" ref_description="SGN-E274726 [cLEN-13-L1]">
      <seq>tgacgagtaccgggaaatacaatgtcgaacgaagccccagcaaaaccaccgtgcgacacaccggagcatgactcagccggcgtcaacggctttgacatcaacaacgacacttcaagtactgccttagcaaagggcctttccactataatatcttctctaatccgggaatttgatgatagtgctgccgccacctctcgtagtcaagatcaactctcttccaccctcgatcgtctcactggagagcttgacaagctgctggaagatgccccattgccttttatcatgcagcatgctgccagaatttctggtgttaggaaaagaattacatcgttgaactcacttttgaagtctatacagaggcgtcttgataatatcgaccacacattatctgctggtttgttacatgagaagtcctcaggggatggtgggcgagaccatgagaatcataagtcttcattgaagagttcatgatcaaaatccaggagaagattcaaatgtccttcgcagtgcccgtagaaatctccttctgattgcaagcatttggaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="68748" stop="72443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69048" g_stop="69288" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69289" i_stop="70586" i_length="1298">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70587" g_stop="70751" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="406" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70752" i_stop="71038" i_length="287">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71039" g_stop="71096" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="464" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71097" i_stop="72058" i_length="962">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72059" g_stop="72143" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="549" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E274726" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69048" e_stop="69288"/>
          <exon e_start="70587" e_stop="70751"/>
          <exon e_start="71039" e_stop="71096"/>
          <exon e_start="72059" e_stop="72143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACGAGTACCGGGAAATACAATGTCGAACGAAGCCCCAGCAAAACCACCGTGCGACACACCGGAGCATGACTCAGCCGGCGTCAACGGCTTTGACATCAACAACGACACTTCAAGTACTGCCTTAGCAAAGGGCCTTTCCACTATAATATCTTCTCTAATCCGGGAATTTGATGATAGTGCTGCCGCCACCTCTCGTAGTCAAGATCAACTCTCTTCCACCCTCGATCGTCTCACTGGAGGTAGAACTCATCACCTTCTTCTAATTGTATTCAATGGACTTAATTTCGACATTTATTTTTGATGCTCTGTTTAATTGGATTTAGGGATCCATTTACTGTTTTACATTTCATTTTTGTTACCAATTGTTATTGAATAGTTTAAAGTGGGAAGCTTTGACAAGAGGGGCTTGTTCGGATGATAAGCACCCTCCACCTTTAATCCTAGAGTTGTGGGTTCAGTTACCAGTGGAGCAAAACGGGTGGGAGCTCCAGGGGATGGATTATAAAAATAAAAAGTAGGAAGATTTGCAAAAAGAATTGTTCTATTGACGGCACATCTTAGAAAGAGTCCAAATAATCTTTACTAAGATGGTTGTTCCAACTGAATAGCTGAATGGTTGAGTCACAGGAGTAACAATCCAGCTGCAATATGATGTGCAGGCTTACCCAAACAGATGTGGTTGCAATGTATCAAGTTGTTCAATGGATTGGTCGAGATGAGCATAAGATGCCGTCACACCATTGTCATGTTAGAGAAATCACCAGGGTTGGGGCGTGTGTGTGTGCTGGGAGGCAATAGCTGTATATGTAATTTTGTTTGCACCTTCTAGTTTCATTTGCAGCTCACCATTGTTTCCTTGAGAATGAATACAATCACTTTCTTCTTCTTTTTTGCTGTTGCTATATGATATATTATAAGTTCTCATTGAACCATAAAGCTAAAGGAGAAAAAAAAAAGAAATACACACTGCTCTCGTAGATATTAACAGAAGGCTAATAACATTGTTGGCTGTACAAAGGTCAATCTTTATTCCATACATTTTGAAAAGTCAAATTAACTTAGTGGGCTATATTTCAGCGTGTGAAAAAAAAGAGAGTTTAAGATATCTTGAAATAATATTAACTTGCCACTTTTTTAAAAATAGATATCTTGAAATAACTTTTTGGCTCCTTCCTCTCCCTTTGGTATGTACAGTGAGACTTTTGTGTTCTCTATGTAAAGTAGAGATGTCGTCCGTGCTCCTTTATGCCTGATTATTAGTGGCGACAATTGCATTGGAAAAAGGATGTAAAACTGTATTTCCTTAAGTTTTGTTACTACATGTCGATTGCATCAGACCAATCTAATTGCCATGGGCTAACTAACTATTACATGCTCTACAGATGCAAGAGAAATCACCGTTCTACATAATATCTAAAAGTATTAAAAAGGATATTAGGAATAAAGATCCAGGTTGCTAAGTCTGGTGTTTAATCGAAGATTCTGCTTTTATGTGATTAATTTTCTTGTTCTTTCTTGGTCCTGCTTCTACCTGCAGAGCTTGACAAGCTGCTGGAAGATGCCCCATTGCCTTTTATCATGCAGCATGCTGCCAGAATTTCTGGTGTTAGGAAAAGAATTACATCGTTGAACTCACTTTTGAAGTCTATACAGAGGCGTCTTGATAATATCGACCACACATTATCTGCTGGTTTGTTACATGGTACACTTATTTTTTTCTTGATACATCTTATGTCAAGTTTTTCATGGAAATTCAATTAGGATGTGTGCAGGTTCTTAATACTTTGTACTCCGCTATGAATGCTTTACTTGTGTAATCTTTCAAATAGTTCTGTACATGAATTTGGTATTATGTCCAAGCTGTAGGACATAAAAGTTCAATGGAACAGTAATTCCATAATATATCTTGGAAATTAATTTTTCCACGGGGTATATAGCGTTTTGAAGGAAGCTTATATCCACTAATGCTTTTGTTGTATCTTTTTGCAGAGAAGTCCTCAGGGGATGGTGGGCGAGACCATGAGAATCATAAGTCTTCATTGAAGAGGTAATGCTGTTTCTGGTGTTCGATGAACATATAATTTTCTCACCTGGGATTTACGTGAGTGAGAACATTTACGAGCTGTAGGAGTTTGATTTGTGATATATTTCCTAGTCTCTTGATGCAAAAAGGTAATCGAGGTTCATCGGGTCATATCTACTTATCCCTTAAACATTTGTTAGGATCTAGAACACGAAATTCTAGTGCATTAGTTGATTTTTCTATGAACCTCTTACTTTTTAAAAACAGTTTTCCTCCCCAAGAGGACATCAGAATCTAGTATGATAGACAGACATAGCTGAGCGTCAATAAGCCAGTGATCCACACAGTCTCCGCTTATTTGTACAGTTATGGAAGCAGGAGGAACAGGTTACTTCCACTGTTTGGTGGAGAAAGTTACTGGTAAATCTTGACCTCCCATTCTGAGATGCCTATCTCACTCGATAAAGAAAAAAGAAAAAACACTCCATTCTTATCTTCAGAGCAGTAATTCTAAGTAAATGTCTCAGTAGTTTTGGCCAAGTTGGGAAGTTTAACATGTAAAACAAGACAACGAGGGTCCAAAATAGGAGGCATATCATGCATAATAAGTGATACCCACACCTGGAAGAGATTACAGGTAGAGCCTGCTAACATAAACTTTTTCCAGACATATTTGGAATCAATGATATCTTCTGAGTTCTTACTATCTAACCTTTCCCAGTGTGTGTCAAATGAATTAATTCAGTGTAATCATTTTGTCTTGTGTTTCAATATCTTGGTGCTGCAATTGGATTGCTGAGAAAATCATTTGTAATTTGGAGCATTATTGAAGTGTGTAATATTACTGAAGCATGCAACATGTGATAATCTTTAGATGAGCTAAATCTTTTCGAGGTGTTGCCTTCATAATGTCTAAAAGGAAGTGTATGAGTTTTATGTCATTGACTAGCCTCTAAATCAGTTACTATGTGGTTGTTTTGGGGCAGTTCATGATCAAAATCCAGGAGAAGATTCAAATGTCCTTCGCAGTGCCCGTAGAAATCTCCTTCTGATTGCAAGCATTTGGAACTG</genome_strand>
        <mrna_strand>TGACGAGTACCGGGAAATACAATGTCGAACGAAGCCCCAGCAAAACCACCGTGCGACACACCGGAGCATGACTCAGCCGGCGTCAACGGCTTTGACATCAACAACGACACTTCAAGTACTGCCTTAGCAAAGGGCCTTTCCACTATAATATCTTCTCTAATCCGGGAATTTGATGATAGTGCTGCCGCCACCTCTCGTAGTCAAGATCAACTCTCTTCCACCCTCGATCGTCTCACTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGACAAGCTGCTGGAAGATGCCCCATTGCCTTTTATCATGCAGCATGCTGCCAGAATTTCTGGTGTTAGGAAAAGAATTACATCGTTGAACTCACTTTTGAAGTCTATACAGAGGCGTCTTGATAATATCGACCACACATTATCTGCTGGTTTGTTACATG...............................................................................................................................................................................................................................................................................................AGAAGTCCTCAGGGGATGGTGGGCGAGACCATGAGAATCATAAGTCTTCATTGAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATGATCAAAATCCAGGAGAAGATTCAAATGTCCTTCGCAGTGCCCGTAGAAATCTCCTTCTGATTGCAAGCATTTGGAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E716656" ref_strand="+" ref_description="SGN-E716656 [FB17CG01]">
      <seq>ggtaatacaatgtcgaacgaagccccagcaaaaccaccgtgcgacacaccggagcatgactcagccggcgtcaacggctttgacatcaacaacgacacttcaagtactgccttagcaaagggcctttccactataatatcttctctaatccgggaatttgatgatagtgctgccgccacctctcgtagtcaagatcaactctcttccaccctcgatcgtctcactggaggcttacccaaacagatgtggttgcaatgtatcaagttgttcaatggattggtcgagatgagcataagatgccgtcacaccattgtcatgttagagaaatcaccagggttggggcgtgtgtgtgtgctgggaggcaatagctgtatatgtaattttgtttgcaccttctagtttcatttgcagctcaccattgtttccttgagaatgaatacaatcactttcttcttcttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="68760" stop="107900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69060" g_stop="69288" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69289" i_stop="69708" i_length="420">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.437" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69709" g_stop="69934" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="455" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69935" i_stop="69986" i_length="52">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.484" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69987" g_stop="70007" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="476" r_length="21" r_score="0.762"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E716656" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69060" e_stop="69288"/>
          <exon e_start="69709" e_stop="69934"/>
          <exon e_start="69987" e_stop="70007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATACAATGTCGAACGAAGCCCCAGCAAAACCACCGTGCGACACACCGGAGCATGACTCAGCCGGCGTCAACGGCTTTGACATCAACAACGACACTTCAAGTACTGCCTTAGCAAAGGGCCTTTCCACTATAATATCTTCTCTAATCCGGGAATTTGATGATAGTGCTGCCGCCACCTCTCGTAGTCAAGATCAACTCTCTTCCACCCTCGATCGTCTCACTGGAGGTAGAACTCATCACCTTCTTCTAATTGTATTCAATGGACTTAATTTCGACATTTATTTTTGATGCTCTGTTTAATTGGATTTAGGGATCCATTTACTGTTTTACATTTCATTTTTGTTACCAATTGTTATTGAATAGTTTAAAGTGGGAAGCTTTGACAAGAGGGGCTTGTTCGGATGATAAGCACCCTCCACCTTTAATCCTAGAGTTGTGGGTTCAGTTACCAGTGGAGCAAAACGGGTGGGAGCTCCAGGGGATGGATTATAAAAATAAAAAGTAGGAAGATTTGCAAAAAGAATTGTTCTATTGACGGCACATCTTAGAAAGAGTCCAAATAATCTTTACTAAGATGGTTGTTCCAACTGAATAGCTGAATGGTTGAGTCACAGGAGTAACAATCCAGCTGCAATATGATGTGCAGGCTTACCCAAACAGATGTGGTTGCAATGTATCAAGTTGTTCAATGGATTGGTCGAGATGAGCATAAGATGCCGTCACACCATTGTCATGTTAGAGAAATCACCAGGGTTGGGGCGTGTGTGTGTGCTGGGAGGCAATAGCTGTATATGTAATTTTGTTTGCACCTTCTAGTTTCATTTGCAGCTCACCATTGTTTCCTTGAGAATGAATACAATCACTTTCTTCTTCTTTTTTGCTGTTGCTATATGATATATTATAAGTTCTCATTGAACCATAAAGCTAAAGGAGAAAAAAAAAAGA</genome_strand>
        <mrna_strand>GGTAATACAATGTCGAACGAAGCCCCAGCAAAACCACCGTGCGACACACCGGAGCATGACTCAGCCGGCGTCAACGGCTTTGACATCAACAACGACACTTCAAGTACTGCCTTAGCAAAGGGCCTTTCCACTATAATATCTTCTCTAATCCGGGAATTTGATGATAGTGCTGCCGCCACCTCTCGTAGTCAAGATCAACTCTCTTCCACCCTCGATCGTCTCACTGGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTACCCAAACAGATGTGGTTGCAATGTATCAAGTTGTTCAATGGATTGGTCGAGATGAGCATAAGATGCCGTCACACCATTGTCATGTTAGAGAAATCACCAGGGTTGGGGCGTGTGTGTGTGCTGGGAGGCAATAGCTGTATATGTAATTTTGTTTGCACCTTCTAGTTTCATTTGCAGCTCACCATTGTTTCCTTGAGAATGAATACAATCACTTTCTTCTT....................................................CTTAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E274732" ref_strand="+" ref_description="SGN-E274732 [cLEN-13-N1]">
      <seq>cttcaagtactgccttagctgagggcctttccactataatatcttctctaatccgggaatttgatgatagtgctgccgccacctctcgtagtcaagatcaactgtcttacaccctggataggctcactggagagcttgacaagctgctggaagatgccccattgccttttatgatgcagcatgctgccagaatttctggtgttaggaaaagaattacatcgttgaactcacttttgaagtctatacagaggcgtcttgataatatcgaccacacattatctgctggattgatacatgagaagtcctcaggggatggtgggcgagaccatgagaatcataagtcttcattgaagagttcatgatcaaaatccaggagaagattcaaatgtccttcgcagtgcccgtagaaatctccttctgattgcaagcatttggaactgattcagccttgtggtgtaaaaggtagtctgatgcatgaggttataacacactgcgttctgaaaagatgttcttttacctgtcaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="68857" stop="72530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69157" g_stop="69288" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69289" i_stop="70586" i_length="1298">
            <donor d_prob="0.992" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70587" g_stop="70751" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="297" r_length="165" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70752" i_stop="71038" i_length="287">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71039" g_stop="71096" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="355" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71097" i_stop="72058" i_length="962">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72059" g_stop="72230" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="527" r_length="172" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E274732" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69157" e_stop="69288"/>
          <exon e_start="70587" e_stop="70751"/>
          <exon e_start="71039" e_stop="71096"/>
          <exon e_start="72059" e_stop="72230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAAGTACTGCCTTAGCAAAGGGCCTTTCCACTATAATATCTTCTCTAATCCGGGAATTTGATGATAGTGCTGCCGCCACCTCTCGTAGTCAAGATCAACTCTCTTCCACCCTCGATCGTCTCACTGGAGGTAGAACTCATCACCTTCTTCTAATTGTATTCAATGGACTTAATTTCGACATTTATTTTTGATGCTCTGTTTAATTGGATTTAGGGATCCATTTACTGTTTTACATTTCATTTTTGTTACCAATTGTTATTGAATAGTTTAAAGTGGGAAGCTTTGACAAGAGGGGCTTGTTCGGATGATAAGCACCCTCCACCTTTAATCCTAGAGTTGTGGGTTCAGTTACCAGTGGAGCAAAACGGGTGGGAGCTCCAGGGGATGGATTATAAAAATAAAAAGTAGGAAGATTTGCAAAAAGAATTGTTCTATTGACGGCACATCTTAGAAAGAGTCCAAATAATCTTTACTAAGATGGTTGTTCCAACTGAATAGCTGAATGGTTGAGTCACAGGAGTAACAATCCAGCTGCAATATGATGTGCAGGCTTACCCAAACAGATGTGGTTGCAATGTATCAAGTTGTTCAATGGATTGGTCGAGATGAGCATAAGATGCCGTCACACCATTGTCATGTTAGAGAAATCACCAGGGTTGGGGCGTGTGTGTGTGCTGGGAGGCAATAGCTGTATATGTAATTTTGTTTGCACCTTCTAGTTTCATTTGCAGCTCACCATTGTTTCCTTGAGAATGAATACAATCACTTTCTTCTTCTTTTTTGCTGTTGCTATATGATATATTATAAGTTCTCATTGAACCATAAAGCTAAAGGAGAAAAAAAAAAGAAATACACACTGCTCTCGTAGATATTAACAGAAGGCTAATAACATTGTTGGCTGTACAAAGGTCAATCTTTATTCCATACATTTTGAAAAGTCAAATTAACTTAGTGGGCTATATTTCAGCGTGTGAAAAAAAAGAGAGTTTAAGATATCTTGAAATAATATTAACTTGCCACTTTTTTAAAAATAGATATCTTGAAATAACTTTTTGGCTCCTTCCTCTCCCTTTGGTATGTACAGTGAGACTTTTGTGTTCTCTATGTAAAGTAGAGATGTCGTCCGTGCTCCTTTATGCCTGATTATTAGTGGCGACAATTGCATTGGAAAAAGGATGTAAAACTGTATTTCCTTAAGTTTTGTTACTACATGTCGATTGCATCAGACCAATCTAATTGCCATGGGCTAACTAACTATTACATGCTCTACAGATGCAAGAGAAATCACCGTTCTACATAATATCTAAAAGTATTAAAAAGGATATTAGGAATAAAGATCCAGGTTGCTAAGTCTGGTGTTTAATCGAAGATTCTGCTTTTATGTGATTAATTTTCTTGTTCTTTCTTGGTCCTGCTTCTACCTGCAGAGCTTGACAAGCTGCTGGAAGATGCCCCATTGCCTTTTATCATGCAGCATGCTGCCAGAATTTCTGGTGTTAGGAAAAGAATTACATCGTTGAACTCACTTTTGAAGTCTATACAGAGGCGTCTTGATAATATCGACCACACATTATCTGCTGGTTTGTTACATGGTACACTTATTTTTTTCTTGATACATCTTATGTCAAGTTTTTCATGGAAATTCAATTAGGATGTGTGCAGGTTCTTAATACTTTGTACTCCGCTATGAATGCTTTACTTGTGTAATCTTTCAAATAGTTCTGTACATGAATTTGGTATTATGTCCAAGCTGTAGGACATAAAAGTTCAATGGAACAGTAATTCCATAATATATCTTGGAAATTAATTTTTCCACGGGGTATATAGCGTTTTGAAGGAAGCTTATATCCACTAATGCTTTTGTTGTATCTTTTTGCAGAGAAGTCCTCAGGGGATGGTGGGCGAGACCATGAGAATCATAAGTCTTCATTGAAGAGGTAATGCTGTTTCTGGTGTTCGATGAACATATAATTTTCTCACCTGGGATTTACGTGAGTGAGAACATTTACGAGCTGTAGGAGTTTGATTTGTGATATATTTCCTAGTCTCTTGATGCAAAAAGGTAATCGAGGTTCATCGGGTCATATCTACTTATCCCTTAAACATTTGTTAGGATCTAGAACACGAAATTCTAGTGCATTAGTTGATTTTTCTATGAACCTCTTACTTTTTAAAAACAGTTTTCCTCCCCAAGAGGACATCAGAATCTAGTATGATAGACAGACATAGCTGAGCGTCAATAAGCCAGTGATCCACACAGTCTCCGCTTATTTGTACAGTTATGGAAGCAGGAGGAACAGGTTACTTCCACTGTTTGGTGGAGAAAGTTACTGGTAAATCTTGACCTCCCATTCTGAGATGCCTATCTCACTCGATAAAGAAAAAAGAAAAAACACTCCATTCTTATCTTCAGAGCAGTAATTCTAAGTAAATGTCTCAGTAGTTTTGGCCAAGTTGGGAAGTTTAACATGTAAAACAAGACAACGAGGGTCCAAAATAGGAGGCATATCATGCATAATAAGTGATACCCACACCTGGAAGAGATTACAGGTAGAGCCTGCTAACATAAACTTTTTCCAGACATATTTGGAATCAATGATATCTTCTGAGTTCTTACTATCTAACCTTTCCCAGTGTGTGTCAAATGAATTAATTCAGTGTAATCATTTTGTCTTGTGTTTCAATATCTTGGTGCTGCAATTGGATTGCTGAGAAAATCATTTGTAATTTGGAGCATTATTGAAGTGTGTAATATTACTGAAGCATGCAACATGTGATAATCTTTAGATGAGCTAAATCTTTTCGAGGTGTTGCCTTCATAATGTCTAAAAGGAAGTGTATGAGTTTTATGTCATTGACTAGCCTCTAAATCAGTTACTATGTGGTTGTTTTGGGGCAGTTCATGATCAAAATCCAGGAGAAGATTCAAATGTCCTTCGCAGTGCCCGTAGAAATCTCCTTCTGATTGCAAGCATTTGGAACTGATTCAGCCTTGTGGTGTAAAAGGTAGTCTGATGCATGAGGTTATAACACACTGCGTTCTGAAAAGATGTTCTTTTACCTGTCAAAAA</genome_strand>
        <mrna_strand>CTTCAAGTACTGCCTTAGCTGAGGGCCTTTCCACTATAATATCTTCTCTAATCCGGGAATTTGATGATAGTGCTGCCGCCACCTCTCGTAGTCAAGATCAACTGTCTTACACCCTGGATAGGCTCACTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGACAAGCTGCTGGAAGATGCCCCATTGCCTTTTATGATGCAGCATGCTGCCAGAATTTCTGGTGTTAGGAAAAGAATTACATCGTTGAACTCACTTTTGAAGTCTATACAGAGGCGTCTTGATAATATCGACCACACATTATCTGCTGGATTGATACATG...............................................................................................................................................................................................................................................................................................AGAAGTCCTCAGGGGATGGTGGGCGAGACCATGAGAATCATAAGTCTTCATTGAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATGATCAAAATCCAGGAGAAGATTCAAATGTCCTTCGCAGTGCCCGTAGAAATCTCCTTCTGATTGCAAGCATTTGGAACTGATTCAGCCTTGTGGTGTAAAAGGTAGTCTGATGCATGAGGTTATAACACACTGCGTTCTGAAAAGATGTTCTTTTACCTGTCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E268758" ref_strand="+" ref_description="SGN-E268758 [cLEM-16-P13]">
      <seq>ctctttctttttatatatatatatattccattctgtaatcgttacgttaacgtttcttctatttgtatgtacgccggaaattatggcttcagcttgcgttaacaaaatgggtatgtcgccggagaagtttttggattgttctccggctgcgaagtacaagtcatatggttggttaagtccaaggatgtcatttagtaaggacggcgaagcttccaaagttgccggagctaagcagacgagtgttgaaaatgataaagtggaggaattagatccagaagtttcgaaagatatgggcgattttgagttttgccttgaagatccggttaatatgctgccagctgatgagctttttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="76304" stop="77258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76604" g_stop="76958" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E268758" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76604" e_stop="76958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTCTTTTTATATATATATATATTCCATTCTGTAATCGTTACGTTAACGTTTCTTCTATTTGTATGTACGCCGGAAATTATGGCTTCAGCTTGCGTTAACAAAATGGGTATGTCGCCGGAGAAGTTTTTGGATTGTTCTCCGGCTGCGAAGTACAAGTCATATGGTTGGTTAAGTCCAAGGATGTCATTTAGTAGGGACGGCGAAGCTTCCAAGGTTGCCGGAGCTAAGCAGACGAGTGTTGAAAATGATAAGGTGGAGGAATTAGATCCAGAAGTTTCGAAAGATATGGGCGATTTTGAGTTTTGCCTTGAAGATCCGGTAAATATGCTGCCAGCTGATGAGCTTTTTTTC</genome_strand>
        <mrna_strand>CTCTTTCTTTTTATATATATATATATTCCATTCTGTAATCGTTACGTTAACGTTTCTTCTATTTGTATGTACGCCGGAAATTATGGCTTCAGCTTGCGTTAACAAAATGGGTATGTCGCCGGAGAAGTTTTTGGATTGTTCTCCGGCTGCGAAGTACAAGTCATATGGTTGGTTAAGTCCAAGGATGTCATTTAGTAAGGACGGCGAAGCTTCCAAAGTTGCCGGAGCTAAGCAGACGAGTGTTGAAAATGATAAAGTGGAGGAATTAGATCCAGAAGTTTCGAAAGATATGGGCGATTTTGAGTTTTGCCTTGAAGATCCGGTTAATATGCTGCCAGCTGATGAGCTTTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E725625" ref_strand="+" ref_description="SGN-E725625 [LA04BD04]">
      <seq>atttcagaccaattctcttctttcacaaagaagctagtaacgtgcaaatcttccctacatggttgaagagttgaagtattcttgcaacactgccagtgaaaccctaaaatggatccatgcaattatcaacttcattgcaccttatcgttattttataaatgctcatgtcgtcggctttttaaaggatagactatgggaagctgtggataaagaatgcatggattgtttacagaaagagtcggttgaaaatattctccggattccttctggtgtggttcaggatcactggcctggctcacttaaagacttcatacttactctgaggtctctttgtctttcacgtgaacagactgattttcaggaattttcaggaatgcacatagcttcactaagtaatgtgttagctcaaggcatgaatcataagagaaagcatgaatgtggagtactttctgctctggtcagcttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="84149" stop="86083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84244" g_stop="84285" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84286" i_stop="84455" i_length="170">
            <donor d_prob="0.928" d_score="0.93"/>
            <acceptor a_prob="0.823" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84456" g_stop="84597" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="184" r_length="142" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84598" i_stop="84724" i_length="127">
            <donor d_prob="0.968" d_score="0.92"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84725" g_stop="84820" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="280" r_length="96" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84821" i_stop="85355" i_length="535">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85356" g_stop="85436" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="361" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85437" i_stop="85706" i_length="270">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85707" g_stop="85781" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="436" r_length="75" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E725625" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84244" e_stop="84285"/>
          <exon e_start="84456" e_stop="84597"/>
          <exon e_start="84725" e_stop="84820"/>
          <exon e_start="85356" e_stop="85436"/>
          <exon e_start="85707" e_stop="85781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCAGCCCAATTCTCTTCTTCCACAAAGAAGCTAGCAACGGTAAAACCCAGAATCGACAAAACAATGGTTAATGAGTATACATTCTGTTTTGGAGTAGTGGTTAGCATATTGCATTGTTAGACTGTCTATGTCACTTCTCAGTTGCTTGATACTTATGGAAATGCATATTTTATTACATTTAAGTTGTTTTTCACCTTGTTCTCTGTTAGTGCAAATCTTCCCTCCATGGCTGAAGAGTTCAAGTATTCTTGCAACACTGCCAGTGAAACCCTAGAATGGATCCATGCAATTATCAACTTCATTGCACCTTATCGTTATTTTATAGATGCTCATGTCGTCAACTTTTTCAAGGTCTTCACCTTCTATTCAGTTTACATAAGATTTAATTGATCTATTTTTGCTACTGTTTATGCTTTGCATATTGCACTCTGCTGCTATTTCATGTGTAAACTTGGAAATTGTTTGCGAGTATATGCAGGATAGACTATGGGAAGCTGTGGATAAAGAATGGATGGATTGTTTACAGAAGGAGTCGGTTGAAAATCTTCTCCGGATTCCTTCTGGTGTGGTTCAGGTAGATATAAGCACATATGTTTTTTGCTTTAAACTTGATATTGTTGAGTTCATGTGTACTTGGATCATTTCTAGTTCGAATTTGTTTGGTTAGTTTGAGTTATCGGAAGTGTAGAGTTACTAGGAGGTTCATTTGCTGCTTTGCTTTTCAGGAAGAAGAATTTCACATTTTTTGTGTTGAATTACTTGTACAGGGTCAAGCAGTAGCACATAGTTTCACTGCTCAATACTACGATGTGAGCTTATCTTTGAATATGACAAGTTCAACGAATAGCAAAGTTCCATTGGCTTGATTGGCCACTAATTATAGCAAATGTAATTTGGATAAATATAACCATATTTATGGTATCTATTCCTTTTGCTGTATGGTTTTAAATAACAAGAATTTCAATACTTGAGTTTAATGTCACCTATCCAGAACTAAAAGGAAAAAAAATGAGAGGAAACAAGTACTTTATTGTCTCCCAACTATAGTATCTATAGCAGTAAGATGACCTATTTCTTTGTTAATTGACTTTGTTTATTTGTGTTGTTAGGATCACTGGCCTGGCTCACTTAAAGACTTCATACTTACTCTGAGGTCTCTTTGTCTTTCACGTGAACAGGCTGATTTTCAGGTATATTTATTTTTATTATCATTCTTTTCTTAAATTTGTGATACATGGTAGTTATAGATTTACCATTAGAGATTTTCGACTTCTCGAATGCCATTGTTCTTACTCATGCTTTTCCCATATTTGAAGTTTTGTACACATAGCTTTCTTTACTGGTGGCATTTCTTCTGGTTTGTTGCTGTGGCATCTGGGTTATGATATCTGTATAACTAGACTAACATTTCACAAGGGAGTCAGGAATTGAATTTCACTTCTTCTTCTGTTTGCTTGCAGGAATTTTCAGGAATGCACATAGCTTCACTAAGTAATGTTTTAGCTCAAGGCATGAATCATAAGAAAAAGCATGAA</genome_strand>
        <mrna_strand>ATTTCAGACCAATTCTCTTCTTTCACAAAGAAGCTAGTAACG..........................................................................................................................................................................TGCAAATCTTCCCTACATGGTTGAAGAGTTGAAGTATTCTTGCAACACTGCCAGTGAAACCCTAAAATGGATCCATGCAATTATCAACTTCATTGCACCTTATCGTTATTTTATAAATGCTCATGTCGTCGGCTTTTTAAAG...............................................................................................................................GATAGACTATGGGAAGCTGTGGATAAAGAATGCATGGATTGTTTACAGAAAGAGTCGGTTGAAAATATTCTCCGGATTCCTTCTGGTGTGGTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCACTGGCCTGGCTCACTTAAAGACTTCATACTTACTCTGAGGTCTCTTTGTCTTTCACGTGAACAGACTGATTTTCAG..............................................................................................................................................................................................................................................................................GAATTTTCAGGAATGCACATAGCTTCACTAAGTAATGTGTTAGCTCAAGGCATGAATCATAAGAGAAAGCATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E315848" ref_strand="+" ref_description="SGN-E315848 [cTOA-26-I13]">
      <seq>aacggtaaaacccagaatcgacaaaacaatggttaatgagtatacattctgttttggagtagtggttagcatattgcattgttagactgtctatgtcacttctcagttgcttgatacttatggaaatgcatattttattacatttaagttgtttttcaccttgttctctgttagtgcaaatcttccctccatggctgaagagttcaagtattcttgcaacactgccagtgaaaccctagaatggatccatgcaattatcaacttcattgcaccttatcgttattttatagatgctcatgtcgtcaactttttcaaggatagactatgggaagctgtggataaagaatggatggattgtttacagaaggagtcggttgaaaatcttctccggattccttctggtgtggttcaggatcactggcctggctcacttaaagacttcatacttactctgaggtctctttgtctttcacgtgaacaggctgattttcaggaattttcaggaatgcacatagcttcactaagtaatgttttagctcaaggcatgaatcataagaaaaagcatgaagtggaagtactttctgctctggtcagcttagtcgcaaagcaagttggtgcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="83982" stop="86602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84282" g_stop="84597" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84598" i_stop="84724" i_length="127">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84725" g_stop="84820" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="412" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84821" i_stop="85355" i_length="535">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85356" g_stop="85436" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="493" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85437" i_stop="85706" i_length="270">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85707" g_stop="85781" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="568" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85782" i_stop="86249" i_length="468">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86250" g_stop="86302" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="621" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E315848" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84282" e_stop="84597"/>
          <exon e_start="84725" e_stop="84820"/>
          <exon e_start="85356" e_stop="85436"/>
          <exon e_start="85707" e_stop="85781"/>
          <exon e_start="86250" e_stop="86302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGGTAAAACCCAGAATCGACAAAACAATGGTTAATGAGTATACATTCTGTTTTGGAGTAGTGGTTAGCATATTGCATTGTTAGACTGTCTATGTCACTTCTCAGTTGCTTGATACTTATGGAAATGCATATTTTATTACATTTAAGTTGTTTTTCACCTTGTTCTCTGTTAGTGCAAATCTTCCCTCCATGGCTGAAGAGTTCAAGTATTCTTGCAACACTGCCAGTGAAACCCTAGAATGGATCCATGCAATTATCAACTTCATTGCACCTTATCGTTATTTTATAGATGCTCATGTCGTCAACTTTTTCAAGGTCTTCACCTTCTATTCAGTTTACATAAGATTTAATTGATCTATTTTTGCTACTGTTTATGCTTTGCATATTGCACTCTGCTGCTATTTCATGTGTAAACTTGGAAATTGTTTGCGAGTATATGCAGGATAGACTATGGGAAGCTGTGGATAAAGAATGGATGGATTGTTTACAGAAGGAGTCGGTTGAAAATCTTCTCCGGATTCCTTCTGGTGTGGTTCAGGTAGATATAAGCACATATGTTTTTTGCTTTAAACTTGATATTGTTGAGTTCATGTGTACTTGGATCATTTCTAGTTCGAATTTGTTTGGTTAGTTTGAGTTATCGGAAGTGTAGAGTTACTAGGAGGTTCATTTGCTGCTTTGCTTTTCAGGAAGAAGAATTTCACATTTTTTGTGTTGAATTACTTGTACAGGGTCAAGCAGTAGCACATAGTTTCACTGCTCAATACTACGATGTGAGCTTATCTTTGAATATGACAAGTTCAACGAATAGCAAAGTTCCATTGGCTTGATTGGCCACTAATTATAGCAAATGTAATTTGGATAAATATAACCATATTTATGGTATCTATTCCTTTTGCTGTATGGTTTTAAATAACAAGAATTTCAATACTTGAGTTTAATGTCACCTATCCAGAACTAAAAGGAAAAAAAATGAGAGGAAACAAGTACTTTATTGTCTCCCAACTATAGTATCTATAGCAGTAAGATGACCTATTTCTTTGTTAATTGACTTTGTTTATTTGTGTTGTTAGGATCACTGGCCTGGCTCACTTAAAGACTTCATACTTACTCTGAGGTCTCTTTGTCTTTCACGTGAACAGGCTGATTTTCAGGTATATTTATTTTTATTATCATTCTTTTCTTAAATTTGTGATACATGGTAGTTATAGATTTACCATTAGAGATTTTCGACTTCTCGAATGCCATTGTTCTTACTCATGCTTTTCCCATATTTGAAGTTTTGTACACATAGCTTTCTTTACTGGTGGCATTTCTTCTGGTTTGTTGCTGTGGCATCTGGGTTATGATATCTGTATAACTAGACTAACATTTCACAAGGGAGTCAGGAATTGAATTTCACTTCTTCTTCTGTTTGCTTGCAGGAATTTTCAGGAATGCACATAGCTTCACTAAGTAATGTTTTAGCTCAAGGCATGAATCATAAGAAAAAGCATGAAGTAAGGCATGAAAGTAGCTTAGTCCTCTTACACTCCTATCTTTGTGCTCAATTGGTTGGCTACAAATCTGTGGAACAGTGTTTTATTCTTTGCTTTGAGTCTTTTGTGTGCACCACCTGCTGATATCAGGTCATTTGCGAAAGCTTCTTCTTTTTTTTTTACCATCAAGCTATTAATATTAGCCTTTAGCTATGTGATGCTGGAGTTTTTTTCTAACATTGAATTTTCTAGCTATGTGCTGCTCTAAGTATCCGTTTCAGTGTTCATTTTGTTTTCTCAACCTGAATGAAAGAATGTAATAAATTTTCAGAAGTTTTAACAAAATGGATCAAAGATATACGAGTGTTTTTAAAAAAAAAAATAATTTCTACATTGAGCTTAGGTTCAGAAAACCAACTAATGCAGGTTCCGTGTATGGGTTCAATTTTCTTAACCTGAACGATAGAATGGTAAATACTGTCTAAGCAGGTGGAAGTACTTTCTGCTCTGGTCAGCTTAGTCGCAAAGCAAGTTGGTGCCCG</genome_strand>
        <mrna_strand>AACGGTAAAACCCAGAATCGACAAAACAATGGTTAATGAGTATACATTCTGTTTTGGAGTAGTGGTTAGCATATTGCATTGTTAGACTGTCTATGTCACTTCTCAGTTGCTTGATACTTATGGAAATGCATATTTTATTACATTTAAGTTGTTTTTCACCTTGTTCTCTGTTAGTGCAAATCTTCCCTCCATGGCTGAAGAGTTCAAGTATTCTTGCAACACTGCCAGTGAAACCCTAGAATGGATCCATGCAATTATCAACTTCATTGCACCTTATCGTTATTTTATAGATGCTCATGTCGTCAACTTTTTCAAG...............................................................................................................................GATAGACTATGGGAAGCTGTGGATAAAGAATGGATGGATTGTTTACAGAAGGAGTCGGTTGAAAATCTTCTCCGGATTCCTTCTGGTGTGGTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCACTGGCCTGGCTCACTTAAAGACTTCATACTTACTCTGAGGTCTCTTTGTCTTTCACGTGAACAGGCTGATTTTCAG..............................................................................................................................................................................................................................................................................GAATTTTCAGGAATGCACATAGCTTCACTAAGTAATGTTTTAGCTCAAGGCATGAATCATAAGAAAAAGCATGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAGTACTTTCTGCTCTGGTCAGCTTAGTCGCAAAGCAAGTTGGTGCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E377115" ref_strand="+" ref_description="SGN-E377115 [TUS-21-A17]">
      <seq>agagttctaatagcgagtctaacgctgtggacagatgctcactatttgcaaaattttgcgagtctgggttaggtcgtttacatctccctcatttggcggatacagcttacagtgcaatctggagggagtctgaatcatacgctgagttaataggaccttattggtctcttcgtgctgccctgggccccgttttggaaactcttatactgcttgaccgattgttgctcctccaggagtatggcagtgatctggaggcaagcctcttacctatttttaatcctgtgttatctccgaggaatatggctatcatagctaggaaaattagaaagtagaaaattttctacagtctctaaaaatgtgattcaacatactgtgttgctatgatttgttctcagatattttgaccgcttctgtgttatcctttttttaataaatcttccttaaccaagagaaaaaatgtcagaagaaaggaagcaatttgcgaccaggaacaagctatattattacagatgtctttttaaccagaaaaagaagaacagaagaaacaggaaaaattttgcaaccaggacctagctttgtacatggtccaagcaaaaaatgaagctctagtggtgaaatggtattatatttatttatctatagatgatatttggtttgcaaggtgtctctttacacatttgatctcaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="89354" stop="91364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89654" g_stop="89796" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89797" i_stop="90517" i_length="721">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.241" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90518" g_stop="91064" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="690" r_length="547" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E377115" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89654" e_stop="89796"/>
          <exon e_start="90518" e_stop="91064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTTCTAATAGCGAGTCTAACGCTGTGGACAGATGCTCACTATTTGCAAAATTTTGCGAGTCTGGGTTAGGTCGTTTACATCTCCCTCATTTGGCGGATACAGCTTACAGTGCAATCTGGAGGGAGTCTGAATCATACGCTGTAAGTAGAAGATCTTTCATGACATTATTACTTTTAATTTCCTTGGAGCATTACTAGTTGTCTTCTGTACTTGAAAACTACAACATGAAGAAACCCAATACAGTCTAGCTGTACTTTAAAAACTGTTAGCGGTAAATCAAATGCAAATGCAATTTCAGAAACCTTGTTCTCTTTCCTTTACCTTTTTAAAACAAATTACAAGACAGTATATTAGTTCTGTTTTCCTTTGCTTATCGGCTGGCCAAGATTTGACCCGTTACTTTAATGAAGAGGTGTCCAGTTTGCTCAAACTGCAAGTCATTGGCAAAAACCTCTTGTGGATAGTTGGATGATTTTTAAATGGTCAACTATTTCTTCTCAGCATCAATTTGATTGACGTGATTTTAAAAGGTCAAAAATATCTTAATTAAGTTGAAGTACCACAATATTGGAGCCTTGTTGTTTATTAGTCGATGTAATAGCTTTCACTTAGGAATGGAGATCTGGTGGTTGTACATTATGTACAGCATTATTGTACTTTCAGATTCTCATGAGTTGAACTTACCAGTCCTAACTAGCTCAAAATATGTCTATGTGTGATCCTTGGTGGTTTTGTTCTCGAGAAAGTAAAGATGTCTGTTATTTCTTATATTCTTTTTGGGGCCTGATAAATAACCAAAAAGATTCCTTAAAAGGAACAAGAATCTTTCTTACTCTGATAAAAGTAATTAACGTTCCGCAGGAGTTAATAGGACCTTATTGGTCTCTTCGTGCTGCCCTGGGCCCCGTTTTGGAAACTCTTATACTGCTTGACCGATTGTTGCTCCTCCAGGAGTATGGCAGTGATCTGGAGGCAAGCCTCTTACCTATTTTTAATCCTGTGTTATCTCCGAGGAATATGGCTATCATAGCTAGGAAAATTAGAAAGTAGAAAATTTTCTACAGTCTCTAAAAATGTGATTCAACATACTGTGTTGCTATGATTTGTTCTCAGATATTTTGACCGCTTCTGTGTTATCCTTTTTTTAATAAATCTTCCTTAACCAAGAGAAAAAATGTCAGAAGAAAGGAAGCAATTTGCGACCAGGAACAAGCTATATTATTACAGATGTCTTTTTAACCAGAAAAAGAAGAACAGAAGAAACAGGAAAAATTTTGCAACCAGGACCTAGCTTTGTACATGGTCCAAGCAAAAAATGAAGCTCTAGTGGTGAAATGGTATTATATTTATTTATCTATAGATGATATTTGGTTTGCAAGGTGTCTCTTTACACATTTGATCTCAAGTT</genome_strand>
        <mrna_strand>AGAGTTCTAATAGCGAGTCTAACGCTGTGGACAGATGCTCACTATTTGCAAAATTTTGCGAGTCTGGGTTAGGTCGTTTACATCTCCCTCATTTGGCGGATACAGCTTACAGTGCAATCTGGAGGGAGTCTGAATCATACGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTAATAGGACCTTATTGGTCTCTTCGTGCTGCCCTGGGCCCCGTTTTGGAAACTCTTATACTGCTTGACCGATTGTTGCTCCTCCAGGAGTATGGCAGTGATCTGGAGGCAAGCCTCTTACCTATTTTTAATCCTGTGTTATCTCCGAGGAATATGGCTATCATAGCTAGGAAAATTAGAAAGTAGAAAATTTTCTACAGTCTCTAAAAATGTGATTCAACATACTGTGTTGCTATGATTTGTTCTCAGATATTTTGACCGCTTCTGTGTTATCCTTTTTTTAATAAATCTTCCTTAACCAAGAGAAAAAATGTCAGAAGAAAGGAAGCAATTTGCGACCAGGAACAAGCTATATTATTACAGATGTCTTTTTAACCAGAAAAAGAAGAACAGAAGAAACAGGAAAAATTTTGCAACCAGGACCTAGCTTTGTACATGGTCCAAGCAAAAAATGAAGCTCTAGTGGTGAAATGGTATTATATTTATTTATCTATAGATGATATTTGGTTTGCAAGGTGTCTCTTTACACATTTGATCTCAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E232079" ref_strand="+" ref_description="SGN-E232079 [cLED-7-L5]">
      <seq>agagttctaatagcgagtctaacgctgtggacagatgctcactatttgcaaaattttgcgagtctgggttaggtcgtttacatctccctcatttggcggatacagcttacagtgcaatctggagggagtctgaatcatacgctgagttaataggaccttattggtctcttcgtgctgccctgggccccgttttggaaactcttatactgcttgaccgattgttgctcctccaggagtatggcagtgatctggaggcaagcctcttacctatttttaatcctgtgttatctccgaggaatatggctatcatagctaggaaaattagaaagtagaaaattttctacagtctctaaaaatgtgattcaacatactgtgttgctatgatttgttctcagatattttgaccgcttctgtgttatcctttttttaataaatcttccttaaccaagagaaaaaatgtcagaagaaaggaagcaatttgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="89354" stop="91157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89654" g_stop="89796" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89797" i_stop="90517" i_length="721">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.241" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90518" g_stop="90857" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="483" r_length="340" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E232079" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89654" e_stop="89796"/>
          <exon e_start="90518" e_stop="90857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTTCTAATAGCGAGTCTAACGCTGTGGACAGATGCTCACTATTTGCAAAATTTTGCGAGTCTGGGTTAGGTCGTTTACATCTCCCTCATTTGGCGGATACAGCTTACAGTGCAATCTGGAGGGAGTCTGAATCATACGCTGTAAGTAGAAGATCTTTCATGACATTATTACTTTTAATTTCCTTGGAGCATTACTAGTTGTCTTCTGTACTTGAAAACTACAACATGAAGAAACCCAATACAGTCTAGCTGTACTTTAAAAACTGTTAGCGGTAAATCAAATGCAAATGCAATTTCAGAAACCTTGTTCTCTTTCCTTTACCTTTTTAAAACAAATTACAAGACAGTATATTAGTTCTGTTTTCCTTTGCTTATCGGCTGGCCAAGATTTGACCCGTTACTTTAATGAAGAGGTGTCCAGTTTGCTCAAACTGCAAGTCATTGGCAAAAACCTCTTGTGGATAGTTGGATGATTTTTAAATGGTCAACTATTTCTTCTCAGCATCAATTTGATTGACGTGATTTTAAAAGGTCAAAAATATCTTAATTAAGTTGAAGTACCACAATATTGGAGCCTTGTTGTTTATTAGTCGATGTAATAGCTTTCACTTAGGAATGGAGATCTGGTGGTTGTACATTATGTACAGCATTATTGTACTTTCAGATTCTCATGAGTTGAACTTACCAGTCCTAACTAGCTCAAAATATGTCTATGTGTGATCCTTGGTGGTTTTGTTCTCGAGAAAGTAAAGATGTCTGTTATTTCTTATATTCTTTTTGGGGCCTGATAAATAACCAAAAAGATTCCTTAAAAGGAACAAGAATCTTTCTTACTCTGATAAAAGTAATTAACGTTCCGCAGGAGTTAATAGGACCTTATTGGTCTCTTCGTGCTGCCCTGGGCCCCGTTTTGGAAACTCTTATACTGCTTGACCGATTGTTGCTCCTCCAGGAGTATGGCAGTGATCTGGAGGCAAGCCTCTTACCTATTTTTAATCCTGTGTTATCTCCGAGGAATATGGCTATCATAGCTAGGAAAATTAGAAAGTAGAAAATTTTCTACAGTCTCTAAAAATGTGATTCAACATACTGTGTTGCTATGATTTGTTCTCAGATATTTTGACCGCTTCTGTGTTATCCTTTTTTTAATAAATCTTCCTTAACCAAGAGAAAAAATGTCAGAAGAAAGGAAGCAATTTGCG</genome_strand>
        <mrna_strand>AGAGTTCTAATAGCGAGTCTAACGCTGTGGACAGATGCTCACTATTTGCAAAATTTTGCGAGTCTGGGTTAGGTCGTTTACATCTCCCTCATTTGGCGGATACAGCTTACAGTGCAATCTGGAGGGAGTCTGAATCATACGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTAATAGGACCTTATTGGTCTCTTCGTGCTGCCCTGGGCCCCGTTTTGGAAACTCTTATACTGCTTGACCGATTGTTGCTCCTCCAGGAGTATGGCAGTGATCTGGAGGCAAGCCTCTTACCTATTTTTAATCCTGTGTTATCTCCGAGGAATATGGCTATCATAGCTAGGAAAATTAGAAAGTAGAAAATTTTCTACAGTCTCTAAAAATGTGATTCAACATACTGTGTTGCTATGATTTGTTCTCAGATATTTTGACCGCTTCTGTGTTATCCTTTTTTTAATAAATCTTCCTTAACCAAGAGAAAAAATGTCAGAAGAAAGGAAGCAATTTGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E240448" ref_strand="+" ref_description="SGN-E240448 [cLED-21-E9]">
      <seq>cgagtctaacgctgtggacagatgctcactatttgcaaaattttgcgagtctgggttaggtcgtttacatctccctcatttggcggatacagcttacagtgcaatctggagggagtctgaatcatacgctgagttaataggaccttattggtctcttcgtgctgccctgggccccgttttggaaactcttatactgcttgaccgattgttgctcctccaggagtatggcagtgatctggaggcaagcctcttacctatttttaatcctgtgttatctccgaggaatatggctatcatagctaggaaaattagaaagtagaaaattttctacagtctctaaaaatgtgattcaacatactgtgttgctatgatttgttctcagatattttgaccgcttctgtgttatcctttttttaataaatcttccttaaccaagagaaaaaatgtcagaagaaaggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="89367" stop="91148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89667" g_stop="89796" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89797" i_stop="90517" i_length="721">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.241" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90518" g_stop="90848" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="461" r_length="331" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E240448" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89667" e_stop="89796"/>
          <exon e_start="90518" e_stop="90848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGTCTAACGCTGTGGACAGATGCTCACTATTTGCAAAATTTTGCGAGTCTGGGTTAGGTCGTTTACATCTCCCTCATTTGGCGGATACAGCTTACAGTGCAATCTGGAGGGAGTCTGAATCATACGCTGTAAGTAGAAGATCTTTCATGACATTATTACTTTTAATTTCCTTGGAGCATTACTAGTTGTCTTCTGTACTTGAAAACTACAACATGAAGAAACCCAATACAGTCTAGCTGTACTTTAAAAACTGTTAGCGGTAAATCAAATGCAAATGCAATTTCAGAAACCTTGTTCTCTTTCCTTTACCTTTTTAAAACAAATTACAAGACAGTATATTAGTTCTGTTTTCCTTTGCTTATCGGCTGGCCAAGATTTGACCCGTTACTTTAATGAAGAGGTGTCCAGTTTGCTCAAACTGCAAGTCATTGGCAAAAACCTCTTGTGGATAGTTGGATGATTTTTAAATGGTCAACTATTTCTTCTCAGCATCAATTTGATTGACGTGATTTTAAAAGGTCAAAAATATCTTAATTAAGTTGAAGTACCACAATATTGGAGCCTTGTTGTTTATTAGTCGATGTAATAGCTTTCACTTAGGAATGGAGATCTGGTGGTTGTACATTATGTACAGCATTATTGTACTTTCAGATTCTCATGAGTTGAACTTACCAGTCCTAACTAGCTCAAAATATGTCTATGTGTGATCCTTGGTGGTTTTGTTCTCGAGAAAGTAAAGATGTCTGTTATTTCTTATATTCTTTTTGGGGCCTGATAAATAACCAAAAAGATTCCTTAAAAGGAACAAGAATCTTTCTTACTCTGATAAAAGTAATTAACGTTCCGCAGGAGTTAATAGGACCTTATTGGTCTCTTCGTGCTGCCCTGGGCCCCGTTTTGGAAACTCTTATACTGCTTGACCGATTGTTGCTCCTCCAGGAGTATGGCAGTGATCTGGAGGCAAGCCTCTTACCTATTTTTAATCCTGTGTTATCTCCGAGGAATATGGCTATCATAGCTAGGAAAATTAGAAAGTAGAAAATTTTCTACAGTCTCTAAAAATGTGATTCAACATACTGTGTTGCTATGATTTGTTCTCAGATATTTTGACCGCTTCTGTGTTATCCTTTTTTTAATAAATCTTCCTTAACCAAGAGAAAAAATGTCAGAAGAAAGGAAG</genome_strand>
        <mrna_strand>CGAGTCTAACGCTGTGGACAGATGCTCACTATTTGCAAAATTTTGCGAGTCTGGGTTAGGTCGTTTACATCTCCCTCATTTGGCGGATACAGCTTACAGTGCAATCTGGAGGGAGTCTGAATCATACGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTAATAGGACCTTATTGGTCTCTTCGTGCTGCCCTGGGCCCCGTTTTGGAAACTCTTATACTGCTTGACCGATTGTTGCTCCTCCAGGAGTATGGCAGTGATCTGGAGGCAAGCCTCTTACCTATTTTTAATCCTGTGTTATCTCCGAGGAATATGGCTATCATAGCTAGGAAAATTAGAAAGTAGAAAATTTTCTACAGTCTCTAAAAATGTGATTCAACATACTGTGTTGCTATGATTTGTTCTCAGATATTTTGACCGCTTCTGTGTTATCCTTTTTTTAATAAATCTTCCTTAACCAAGAGAAAAAATGTCAGAAGAAAGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E377114" ref_strand="+" ref_description="SGN-E377114 [TUS-21-A17]">
      <seq>tttttttttttttttttttttttttttttttttttttgggctatgggccttgaatacttcataggacaggggacacaaccctccacaacttatatattaaaaaggacaatttctcatgacattacatcccaaagtgaataaaggacaatatcataatcataaaaaccctgagtagtcaaaatgtgaaaccaacatttaaattagcaataggttggatatatatttcaattgataaccacattctcatttttgggcttgtcttctcaccttgaaaaaagacagcagtatataaacttgaaatcaaatgtgtaaagaaacaccttgcaaaccaaatatcatttatagataaataaatataataccatttcaccactaaagcttcattttttgcttggaccatgtacaaagctaggtcctggttgcaaaatttttcctgtttcttctgttcttctttttctggttaaaaagacatttgtaataatatagcttgttcctggtcgcaaattgcttcctttcttctgacattttttcttttggttaaggaagatttattaaaaaaaggataacacagaagcggtcaaaatatctgagaacaaatcatagcaacacagtatgttgaatcaccatttttagagactgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="119595" stop="90417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91355" g_stop="90717" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="640" r_length="640" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E377114" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91355" e_stop="90717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAATTAGCTTAAAGTTCATGTCATCACCTGTCATTTGTCTATTGTCCTTGAATACTTCATAGGACAGTGGACACAACCCTCCACAACTTATATATTAAAAAGGACAATTTCTCATGACATTACATCCCAAAGTGAATAAAGGACAATATCATAATCATAAGAACCCTGAGTAGTCAGAATGTGAAACCAACATTTAAATTAGCAATAGGTTGGATATATATTTCAATTGATAACCACATTCTCATTCTTGGGCTTGTCTTCTCACCTTGAGAAAAGACAGCAGTATATAAACTTGAGATCAAATGTGTAAAGAGACACCTTGCAAACCAAATATCATCTATAGATAAATAAATATAATACCATTTCACCACTAGAGCTTCATTTTTTGCTTGGACCATGTACAAAGCTAGGTCCTGGTTGCAAAATTTTTCCTGTTTCTTCTGTTCTTCTTTTTCTGGTTAAAAAGACATCTGTAATAATATAGCTTGTTCCTGGTCGCAAATTGCTTCCTTTCTTCTGACATTTTTTCTCTTGGTTAAGGAAGATTTATTAAAAAAAGGATAACACAGAAGCGGTCAAAATATCTGAGAACAAATCATAGCAACACAGTATGTTGAATCA-CATTTTTAGAGACTGT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGCTATGGGCCTTGAATACTTCATAGGACAGGGGACACAACCCTCCACAACTTATATATTAAAAAGGACAATTTCTCATGACATTACATCCCAAAGTGAATAAAGGACAATATCATAATCATAAAAACCCTGAGTAGTCAAAATGTGAAACCAACATTTAAATTAGCAATAGGTTGGATATATATTTCAATTGATAACCACATTCTCATTTTTGGGCTTGTCTTCTCACCTTGAAAAAAGACAGCAGTATATAAACTTGAAATCAAATGTGTAAAGAAACACCTTGCAAACCAAATATCATTTATAGATAAATAAATATAATACCATTTCACCACTAAAGCTTCATTTTTTGCTTGGACCATGTACAAAGCTAGGTCCTGGTTGCAAAATTTTTCCTGTTTCTTCTGTTCTTCTTTTTCTGGTTAAAAAGACATTTGTAATAATATAGCTTGTTCCTGGTCGCAAATTGCTTCCTTTCTTCTGACATTTTTTCTTTTGGTTAAGGAAGATTTATTAAAAAAAGGATAACACAGAAGCGGTCAAAATATCTGAGAACAAATCATAGCAACACAGTATGTTGAATCACCATTTTTAGAGACTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E271645" ref_strand="+" ref_description="SGN-E271645 [cLEM-23-M3]">
      <seq>gattagtcaatccaaaatttttccctaaaaggaaaacctatttatgttaagaaattatggtaaataaaatccaacaaatctcctcccccttggcctgtatttctgaccaaaataaatttctccacattcttcatttaatcttcaacaacttgcttctcttcttcttaatctcctttgtaaaatttatgtctcaaccatagaaaacctctctgaaacaatttctccaacaaaatcttcattactgtcaaaaagattgcggctagaacctaccacctgtcaagatgaaccaccaccctctttctaacctggtccaataatcgattatcgaaccactgaacctgacctctgtcattaaatggctctaatacccacttgttaggatcgaaataagcaggtgtaaatgcggaagctagcaaagcaaacttcgaaagaccacgagtaagaagacaacgagaaatataccaaaagacaccaaagatttaacgtggttcggtcaatcgacctacgttcacaaaggagatgagcaatccactataaatatgagagtacaatatacagagagaaacaacatcaaccaattcattcggaatatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="93931" stop="95115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94231" g_stop="94815" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="595" r_length="595" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E271645" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94231" e_stop="94815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTAGTCAATCCAAAATTTTTCCCTAAAAGGAAAACCTATTTATGTTAAGAAATTATGGTAAATAAAATCCAACAAATCTCCTCCCCCTTGGCCTGTATTTCTGA-CAAAATAAATTTCTCCACATTCTTCATTTAATCTTCAACAACTTGCTTCTCTTCTTCTTAATCTCCTTTGTAAAATTTATGTCTCAA-CATAGAAAACCTCTCTGAAACAATTTCTCCAACAAAATCTTCATTACTGTCAAAAAGATTGCGGCTAGAA-CTA-CACCTGTCAAGATGAA-CA-CA-CCTCTTTCTAACCTGGTCCAATAATCGATTATCGAACCACTGAACCTGA-CTCTGTCATTAAATGGCTCTAATA-CCACTTGTTAGGATCGAAATAAGCAGGTGTAAATGCGGAAGCTAGCAAAGCAAACTTCGAAAGACCACGAGTAAGAAGACAACGAGAAATATACCAAAAGACA-CAAAGATTTAACGTGGTTCGGTCAATCGACCTACGTTCACAAAGGAGATGAGCAATCCACTATAAATATGAGAGTACAATATACAGAGAGAAACAACATCAACCAATTCATTCGGAATATATG</genome_strand>
        <mrna_strand>GATTAGTCAATCCAAAATTTTTCCCTAAAAGGAAAACCTATTTATGTTAAGAAATTATGGTAAATAAAATCCAACAAATCTCCTCCCCCTTGGCCTGTATTTCTGACCAAAATAAATTTCTCCACATTCTTCATTTAATCTTCAACAACTTGCTTCTCTTCTTCTTAATCTCCTTTGTAAAATTTATGTCTCAACCATAGAAAACCTCTCTGAAACAATTTCTCCAACAAAATCTTCATTACTGTCAAAAAGATTGCGGCTAGAACCTACCACCTGTCAAGATGAACCACCACCCTCTTTCTAACCTGGTCCAATAATCGATTATCGAACCACTGAACCTGACCTCTGTCATTAAATGGCTCTAATACCCACTTGTTAGGATCGAAATAAGCAGGTGTAAATGCGGAAGCTAGCAAAGCAAACTTCGAAAGACCACGAGTAAGAAGACAACGAGAAATATACCAAAAGACACCAAAGATTTAACGTGGTTCGGTCAATCGACCTACGTTCACAAAGGAGATGAGCAATCCACTATAAATATGAGAGTACAATATACAGAGAGAAACAACATCAACCAATTCATTCGGAATATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E395597" ref_strand="+" ref_description="SGN-E395597 [TUS-16-F22]">
      <seq>ttttccttttactatattctaaaaatatgacacataatattttaagtactatattaagaaataaaattagtttgtcttcttaaactcaagggtcgttgttggatgctttttacactattatcttaattttaaaattctctttttatttttgtgatacacttttattagctagccaccaaataaccaaaatatcacgatatatataaatttattcaaaataatttctattatattttatatattccaaaacttttcatttttttttataaattttgtgtctagtcaacatgaatacatataactttttcagtaagttttattaaatacgattatatagatcaaaaaagaaattttttattaaattttatttcagttcaaaatagcgtaatttaaaataatattgaaattagccatgggactataataactagtgcttatatatagatgtagtagagtaccattttagtgatgttaatagggaaatatttttatcaaccacctccccttggactttgatacacttaaatctcctctttcttttcatttctcttcaaaatgagtaacaacaacagcttgagcatggtggaatccaaattaccaccaggatttagattccatccaagagatgaagaacttatttgtgattacttaatgaagaaagttgatcaacaatccgaatatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="98635" stop="99917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98935" g_stop="99617" g_length="683"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="683" r_length="683" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E395597" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98935" e_stop="99617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCTTTTACTATATTCTAAAAATATGACACATAATATTTTAAGTACTATATTAAGAAATAAAATTAGTTTGTCTTCTTAAACTCAAGGGTCGTTGTTGGATGCTTTTTACACTATTATCTTAATTTTAAAATTCTCTTTTTATTTTTGTGATACACTTTTATTAGCTAGCCACCAAATAACCAAAATATCACGATATATATAAATTTATTCAAAATAATTTCTATTATATTTTATATATTCCAAAACTTTTCATTTTTTTTTATAAATTTTGTGTCTAGTCAACATGAATACATATAACTTTTTCAGTAAGTTTTATTAAATACGATTATATAGATCAAAAAAGAAATTTTTTATTAAATTTTATTTCAGTTCAAAATAGCGTAATTTAAAATAATATTGAAATTAGCCATGGGACTATAATAACTAGTGCTTATATATAGATGTAGTAGAGTACCATTTTAGTGATGTTAATAGGGAAATATTTTTATCAACCACCTCCCCTTGGACTTTGATACACTTAAATCTCCTCTTTCTTTTCATTTCTCTTCAAAATGAGTAACAACAACAGCTTGAGCATGGTGGAATCCAAATTACCACCAGGATTTAGATTCCATCCAAGAGATGAAGAACTTATTTGTGATTACTTAATGAAGAAAGTTGATCAACAATCCGAATATCA</genome_strand>
        <mrna_strand>TTTTCCTTTTACTATATTCTAAAAATATGACACATAATATTTTAAGTACTATATTAAGAAATAAAATTAGTTTGTCTTCTTAAACTCAAGGGTCGTTGTTGGATGCTTTTTACACTATTATCTTAATTTTAAAATTCTCTTTTTATTTTTGTGATACACTTTTATTAGCTAGCCACCAAATAACCAAAATATCACGATATATATAAATTTATTCAAAATAATTTCTATTATATTTTATATATTCCAAAACTTTTCATTTTTTTTTATAAATTTTGTGTCTAGTCAACATGAATACATATAACTTTTTCAGTAAGTTTTATTAAATACGATTATATAGATCAAAAAAGAAATTTTTTATTAAATTTTATTTCAGTTCAAAATAGCGTAATTTAAAATAATATTGAAATTAGCCATGGGACTATAATAACTAGTGCTTATATATAGATGTAGTAGAGTACCATTTTAGTGATGTTAATAGGGAAATATTTTTATCAACCACCTCCCCTTGGACTTTGATACACTTAAATCTCCTCTTTCTTTTCATTTCTCTTCAAAATGAGTAACAACAACAGCTTGAGCATGGTGGAATCCAAATTACCACCAGGATTTAGATTCCATCCAAGAGATGAAGAACTTATTTGTGATTACTTAATGAAGAAAGTTGATCAACAATCCGAATATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E206012" ref_strand="+" ref_description="SGN-E206012 [cLEC-20-D21]">
      <seq>tttccttttactatattctaaaaatatgacacataatatgttaagtactatattaagaaataaaattagtttgtcttcttaaactcaagggtcgttgttggatgctttttacactattatcttaattttaaaattctctttttatttttgtgatacacttttattagctagccaccaaataaccaaaatatcacgatatatataaatttattcaaaataatttctattatattttatatattccaaaacttttcatttttttttataaattttgtgtctagtcaacatgaatacatataactttttcagtaagttttattaaatacgattatatagatcaaaaaagaaattttttattaaattttatttcagttcaaaatagcgtaatttaaaataatattgaaattagccatgggactataataactagtgcttatatatagatgtagtagagtaccattttagtgatgttaatagggaaatatttttatcaaccacctccccttggactttgatacacttaaatctcctctttcttttcatttctcttcaaaatgagtaacaacaacagcttgagcatggtggaatccaaattaccaccaggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="98636" stop="99841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98936" g_stop="99541" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="606" r_length="606" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E206012" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98936" e_stop="99541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCTTTTACTATATTCTAAAAATATGACACATAATATTTTAAGTACTATATTAAGAAATAAAATTAGTTTGTCTTCTTAAACTCAAGGGTCGTTGTTGGATGCTTTTTACACTATTATCTTAATTTTAAAATTCTCTTTTTATTTTTGTGATACACTTTTATTAGCTAGCCACCAAATAACCAAAATATCACGATATATATAAATTTATTCAAAATAATTTCTATTATATTTTATATATTCCAAAACTTTTCATTTTTTTTTATAAATTTTGTGTCTAGTCAACATGAATACATATAACTTTTTCAGTAAGTTTTATTAAATACGATTATATAGATCAAAAAAGAAATTTTTTATTAAATTTTATTTCAGTTCAAAATAGCGTAATTTAAAATAATATTGAAATTAGCCATGGGACTATAATAACTAGTGCTTATATATAGATGTAGTAGAGTACCATTTTAGTGATGTTAATAGGGAAATATTTTTATCAACCACCTCCCCTTGGACTTTGATACACTTAAATCTCCTCTTTCTTTTCATTTCTCTTCAAAATGAGTAACAACAACAGCTTGAGCATGGTGGAATCCAAATTACCACCAGGAT</genome_strand>
        <mrna_strand>TTTCCTTTTACTATATTCTAAAAATATGACACATAATATGTTAAGTACTATATTAAGAAATAAAATTAGTTTGTCTTCTTAAACTCAAGGGTCGTTGTTGGATGCTTTTTACACTATTATCTTAATTTTAAAATTCTCTTTTTATTTTTGTGATACACTTTTATTAGCTAGCCACCAAATAACCAAAATATCACGATATATATAAATTTATTCAAAATAATTTCTATTATATTTTATATATTCCAAAACTTTTCATTTTTTTTTATAAATTTTGTGTCTAGTCAACATGAATACATATAACTTTTTCAGTAAGTTTTATTAAATACGATTATATAGATCAAAAAAGAAATTTTTTATTAAATTTTATTTCAGTTCAAAATAGCGTAATTTAAAATAATATTGAAATTAGCCATGGGACTATAATAACTAGTGCTTATATATAGATGTAGTAGAGTACCATTTTAGTGATGTTAATAGGGAAATATTTTTATCAACCACCTCCCCTTGGACTTTGATACACTTAAATCTCCTCTTTCTTTTCATTTCTCTTCAAAATGAGTAACAACAACAGCTTGAGCATGGTGGAATCCAAATTACCACCAGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E205337" ref_strand="+" ref_description="SGN-E205337 [cLEC-25-L13]">
      <seq>tttccttttactatattctaaaaatatgacacataatattttaagtactatattaagaaataaaattagtttgtcttcttaaactcaagggtcgttgttggatgctttttacactattatcttaattttaaaattctctttttatttttgtgatacacttttattagctagccaccaaataaccaaaatatcacgatatatataaatttattcaaaataatttctattatattttatatattccaaaacttttcatttttttttataaattttgtgtctagtcaacatgaatacatataactttttcagtaagttttattaaatacgattatatagatcaaaaaagaaattttttattaaattttatttcagttcaaaatagcgtaatttaaaataatattgaaattagccatgggactataataactagtgcttatatatagatgtagtagagtaccattttagtgatgttaatagggaaatatttttatcaaccacctccccttggactttgatacacttaaatctcctctttcttttcatttctcttcaaaatgagtaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="98636" stop="99798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98936" g_stop="99498" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="563" r_length="563" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E205337" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98936" e_stop="99498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCTTTTACTATATTCTAAAAATATGACACATAATATTTTAAGTACTATATTAAGAAATAAAATTAGTTTGTCTTCTTAAACTCAAGGGTCGTTGTTGGATGCTTTTTACACTATTATCTTAATTTTAAAATTCTCTTTTTATTTTTGTGATACACTTTTATTAGCTAGCCACCAAATAACCAAAATATCACGATATATATAAATTTATTCAAAATAATTTCTATTATATTTTATATATTCCAAAACTTTTCATTTTTTTTTATAAATTTTGTGTCTAGTCAACATGAATACATATAACTTTTTCAGTAAGTTTTATTAAATACGATTATATAGATCAAAAAAGAAATTTTTTATTAAATTTTATTTCAGTTCAAAATAGCGTAATTTAAAATAATATTGAAATTAGCCATGGGACTATAATAACTAGTGCTTATATATAGATGTAGTAGAGTACCATTTTAGTGATGTTAATAGGGAAATATTTTTATCAACCACCTCCCCTTGGACTTTGATACACTTAAATCTCCTCTTTCTTTTCATTTCTCTTCAAAATGAGTAAC</genome_strand>
        <mrna_strand>TTTCCTTTTACTATATTCTAAAAATATGACACATAATATTTTAAGTACTATATTAAGAAATAAAATTAGTTTGTCTTCTTAAACTCAAGGGTCGTTGTTGGATGCTTTTTACACTATTATCTTAATTTTAAAATTCTCTTTTTATTTTTGTGATACACTTTTATTAGCTAGCCACCAAATAACCAAAATATCACGATATATATAAATTTATTCAAAATAATTTCTATTATATTTTATATATTCCAAAACTTTTCATTTTTTTTTATAAATTTTGTGTCTAGTCAACATGAATACATATAACTTTTTCAGTAAGTTTTATTAAATACGATTATATAGATCAAAAAAGAAATTTTTTATTAAATTTTATTTCAGTTCAAAATAGCGTAATTTAAAATAATATTGAAATTAGCCATGGGACTATAATAACTAGTGCTTATATATAGATGTAGTAGAGTACCATTTTAGTGATGTTAATAGGGAAATATTTTTATCAACCACCTCCCCTTGGACTTTGATACACTTAAATCTCCTCTTTCTTTTCATTTCTCTTCAAAATGAGTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E240291" ref_strand="+" ref_description="SGN-E240291 [cLED-25-N22]">
      <seq>gtaagttttattaaatacgattatatagatcaaaaaagaaattttttattaaattttatttcagttcaaaatagcgtaatttaaaataatattgaaattagccatgggactataataactagtgcttatatatagatgtagtagagtaccattttagtgatgttaatagggaaatatttttatcaaccacctccccttggactttgatacacttaaatctcctctttcttttcatttctcttcaaaatgagtaacaacaacagcttgagcatggtggaatccaaattaccaccaggatttagattccatccaagagatgaagaacttatttgtgattacttaatgaagaaagttgatcaacaatccgaatatcaacaacaataccctcttctcatagaagttgacctcaataaatctgaaccatgggaaattcctgaagtggcatgtgttggagggaaggagggtacttctacagccaacgtgaccgaaaatacgcgacggggctccgaacaaacagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="98944" stop="102077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99244" g_stop="99679" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99680" i_stop="101693" i_length="2014">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101694" g_stop="101777" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="519" r_length="83" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E240291" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99244" e_stop="99679"/>
          <exon e_start="101694" e_stop="101777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAGTTTTATTAAATACGATTATATAGATCAAAAAAGAAATTTTTTATTAAATTTTATTTCAGTTCAAAATAGCGTAATTTAAAATAATATTGAAATTAGCCATGGGACTATAATAACTAGTGCTTATATATAGATGTAGTAGAGTACCATTTTAGTGATGTTAATAGGGAAATATTTTTATCAACCACCTCCCCTTGGACTTTGATACACTTAAATCTCCTCTTTCTTTTCATTTCTCTTCAAAATGAGTAACAACAACAGCTTGAGCATGGTGGAATCCAAATTACCACCAGGATTTAGATTCCATCCAAGAGATGAAGAACTTATTTGTGATTACTTAATGAAGAAAGTTGATCAACAATCCGAATATCAACAACAATACCCTCTTCTCATAGAAGTTGACCTCAATAAATCTGAACCATGGGAAATTCCTGGTACGTTTATACTAATTACTTTTACAGAATCTTATAATTTTTTCGTAGATTCGAATTTATTTCATTCACATCTTTTAATTGATCACACACTTTTATGCTTATATATATGAATTTTTTGTTCGTGCCACATAGTTGGGTTGTGGATCAAGTGATAGCTAGCTAACGGATTGGTCCAAAGTTTTCATTTTTTTGGTTTCTATTTTTCGTGGATAAGAATATCATACACTGCTAATAATAATTGTGATTAGTCTTAATTAGAAAAAAAAAATTTATAATTAAAATTGTCTTCTTCGTTAGCATTAACACTTACCAATTTTAATTTTCTTTATGCTTATTCGTTTGTTCACACTGCGTATGTTAAACGCTCTCAAAGTATTTCTACAATATAGCTTGACTTTCCTGTCTATAACCCAAAGTCTTTAATTTATATTTTCCAAAATAAGTAACCACAGAACATTTATTACCATGGTCCTCCTGCTTTATTATTACTTTTTTTAATAAAAGAAATTAACCATCACATAATAATAATAAACACTTCTCGCTAAAAAATTATATTAAATTTACAAAATTAATTATTTTTATGATTCTCTTTGAGTTGTATTTGTATATGTGAATGATATATGAGATATATACGAATTAATGGTTCTCATAAGGTTTCTCATTCAATTAACTTTTGTAGAAATTGACAGTATTGGCATATTGTGTTGAACCAAAAGATGGTGAAAGCGATAGAGATTAATGCAAATATTGATCAATTAACTTACAACATGGCATATATATCTCTTAAGTGACTTGTGTCGACCACACGCGTGTACATTTATACTCCAATTTAGACAAAATTTAAGTACCATTAATTCTGGTCATAACTTTACCCCGTTTAATTTTAAAGCTATCTTGTCGACATCCTCGATTTTTCTTTTGCCATTAAGAGTGTCTCGATCAGTTTATATCTATCTCGATTAAATTTATTGGATATGTATCTTCAGAGATGGATTAGGGGTGGTAAAAGCGGATTTTCAAGAATTCAATTACTTTTGTGTATGATCGTATATTTATATTAAGAAATATTTTAAATATATTAAAGAAACATTTGTCGAGAATACAATAACAAAGTAGACACTTGGTTCCATTCCTCTTCTTTTTTTCATACTCTACCCATCGATCAGGAGGATCAATAGTGTTCTCACTTATTCTTTTGCATTAATGGTGGGGTATGATTCCGCTTATACACGTACAATAAAATTTTACTTATTTTAATTTTTAAAATCACTAGCTATAAACTCGTTATAAACATCAAAATGTGGATTGACATTTGTATTTTTCCAATACATATATAAATAAAGATAATAGATATCTAATGAAATTAATCGAGGTATTTATGATAAATTTTGGAGATAAGCAAATATATCTCCAATGAAATTAATTGAGCAAAAATTGATCACCTAGCTAGTAATTTTTTGGGGTCAATTTAATCCCTTTATTGTAGGAATATAATTCTTTCTTTTACATATCTATTTTCAAAGGAACAGTAATATACACGCACTATACATGTAGGTTCTTTGAACTTCAAATTTCCCCATCAACATCTTTTACCTAAGCCATTTGCATAAATATGGCCCTCCAATAATTAATTATCTCCATTTTTGGATAGAGATTTTAGCACTTAACCCATGCATAAAAGTTTAGGCTATTTTTTCAAAAATAAAACAGGTCCCCTTCCCTTTTTATCATCATCTTCTTAATTTTCGATAATAATACTATGAAATTGACATATTCCTTTTTCCTTTCATTTTCTCATCCTTTTATTATTTGTTTCTTATGCTACTCAATCCTATCTTCTTATGATGCATGTCACGTCGAAACTTACTATGATTTTCTAGAAACAATCAATCAATATTGAACTATGTAATCATCTCATTTAGACAAAGATCATATCTTTTATTATTACCATTGAATTGTGTAGTACCTAAGCTAAAATTAGTTACTTAATCATAACGTTATATATTATTTACAGAAGTGGCATGTGTTGGAGGGAAGGAGTGGTACTTCTACAGCCAACGTGACCGAAAATACGCGACGGGGCTCCGAACAAACAGAG</genome_strand>
        <mrna_strand>GTAAGTTTTATTAAATACGATTATATAGATCAAAAAAGAAATTTTTTATTAAATTTTATTTCAGTTCAAAATAGCGTAATTTAAAATAATATTGAAATTAGCCATGGGACTATAATAACTAGTGCTTATATATAGATGTAGTAGAGTACCATTTTAGTGATGTTAATAGGGAAATATTTTTATCAACCACCTCCCCTTGGACTTTGATACACTTAAATCTCCTCTTTCTTTTCATTTCTCTTCAAAATGAGTAACAACAACAGCTTGAGCATGGTGGAATCCAAATTACCACCAGGATTTAGATTCCATCCAAGAGATGAAGAACTTATTTGTGATTACTTAATGAAGAAAGTTGATCAACAATCCGAATATCAACAACAATACCCTCTTCTCATAGAAGTTGACCTCAATAAATCTGAACCATGGGAAATTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGGCATGTGTTGGAGGGAAGGAG-GGTACTTCTACAGCCAACGTGACCGAAAATACGCGACGGGGCTCCGAACAAACAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E200915" ref_strand="+" ref_description="SGN-E200915 [cLEC-5-O20]">
      <seq>acacttaaatctcctctttcttttcatttctcttcaaaatgagtaacaacaacagcttgagcatggtggaatccaaattaccaccaggatttagattccatccaagagatgaagaacttatttgtgattacttaatgaagaaagttgatcaacaatccgaatatcaacaacaataccctcttctcatagaagttgacctcaataaatctgaaccatgggaaattcctgaagtggcatgtgttggagggaaggagtggtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="99152" stop="102026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99452" g_stop="99679" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99680" i_stop="101693" i_length="2014">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101694" g_stop="101726" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="261" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E200915" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>261</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99452" e_stop="99679"/>
          <exon e_start="101694" e_stop="101726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTTAAATCTCCTCTTTCTTTTCATTTCTCTTCAAAATGAGTAACAACAACAGCTTGAGCATGGTGGAATCCAAATTACCACCAGGATTTAGATTCCATCCAAGAGATGAAGAACTTATTTGTGATTACTTAATGAAGAAAGTTGATCAACAATCCGAATATCAACAACAATACCCTCTTCTCATAGAAGTTGACCTCAATAAATCTGAACCATGGGAAATTCCTGGTACGTTTATACTAATTACTTTTACAGAATCTTATAATTTTTTCGTAGATTCGAATTTATTTCATTCACATCTTTTAATTGATCACACACTTTTATGCTTATATATATGAATTTTTTGTTCGTGCCACATAGTTGGGTTGTGGATCAAGTGATAGCTAGCTAACGGATTGGTCCAAAGTTTTCATTTTTTTGGTTTCTATTTTTCGTGGATAAGAATATCATACACTGCTAATAATAATTGTGATTAGTCTTAATTAGAAAAAAAAAATTTATAATTAAAATTGTCTTCTTCGTTAGCATTAACACTTACCAATTTTAATTTTCTTTATGCTTATTCGTTTGTTCACACTGCGTATGTTAAACGCTCTCAAAGTATTTCTACAATATAGCTTGACTTTCCTGTCTATAACCCAAAGTCTTTAATTTATATTTTCCAAAATAAGTAACCACAGAACATTTATTACCATGGTCCTCCTGCTTTATTATTACTTTTTTTAATAAAAGAAATTAACCATCACATAATAATAATAAACACTTCTCGCTAAAAAATTATATTAAATTTACAAAATTAATTATTTTTATGATTCTCTTTGAGTTGTATTTGTATATGTGAATGATATATGAGATATATACGAATTAATGGTTCTCATAAGGTTTCTCATTCAATTAACTTTTGTAGAAATTGACAGTATTGGCATATTGTGTTGAACCAAAAGATGGTGAAAGCGATAGAGATTAATGCAAATATTGATCAATTAACTTACAACATGGCATATATATCTCTTAAGTGACTTGTGTCGACCACACGCGTGTACATTTATACTCCAATTTAGACAAAATTTAAGTACCATTAATTCTGGTCATAACTTTACCCCGTTTAATTTTAAAGCTATCTTGTCGACATCCTCGATTTTTCTTTTGCCATTAAGAGTGTCTCGATCAGTTTATATCTATCTCGATTAAATTTATTGGATATGTATCTTCAGAGATGGATTAGGGGTGGTAAAAGCGGATTTTCAAGAATTCAATTACTTTTGTGTATGATCGTATATTTATATTAAGAAATATTTTAAATATATTAAAGAAACATTTGTCGAGAATACAATAACAAAGTAGACACTTGGTTCCATTCCTCTTCTTTTTTTCATACTCTACCCATCGATCAGGAGGATCAATAGTGTTCTCACTTATTCTTTTGCATTAATGGTGGGGTATGATTCCGCTTATACACGTACAATAAAATTTTACTTATTTTAATTTTTAAAATCACTAGCTATAAACTCGTTATAAACATCAAAATGTGGATTGACATTTGTATTTTTCCAATACATATATAAATAAAGATAATAGATATCTAATGAAATTAATCGAGGTATTTATGATAAATTTTGGAGATAAGCAAATATATCTCCAATGAAATTAATTGAGCAAAAATTGATCACCTAGCTAGTAATTTTTTGGGGTCAATTTAATCCCTTTATTGTAGGAATATAATTCTTTCTTTTACATATCTATTTTCAAAGGAACAGTAATATACACGCACTATACATGTAGGTTCTTTGAACTTCAAATTTCCCCATCAACATCTTTTACCTAAGCCATTTGCATAAATATGGCCCTCCAATAATTAATTATCTCCATTTTTGGATAGAGATTTTAGCACTTAACCCATGCATAAAAGTTTAGGCTATTTTTTCAAAAATAAAACAGGTCCCCTTCCCTTTTTATCATCATCTTCTTAATTTTCGATAATAATACTATGAAATTGACATATTCCTTTTTCCTTTCATTTTCTCATCCTTTTATTATTTGTTTCTTATGCTACTCAATCCTATCTTCTTATGATGCATGTCACGTCGAAACTTACTATGATTTTCTAGAAACAATCAATCAATATTGAACTATGTAATCATCTCATTTAGACAAAGATCATATCTTTTATTATTACCATTGAATTGTGTAGTACCTAAGCTAAAATTAGTTACTTAATCATAACGTTATATATTATTTACAGAAGTGGCATGTGTTGGAGGGAAGGAGTGGTACT</genome_strand>
        <mrna_strand>ACACTTAAATCTCCTCTTTCTTTTCATTTCTCTTCAAAATGAGTAACAACAACAGCTTGAGCATGGTGGAATCCAAATTACCACCAGGATTTAGATTCCATCCAAGAGATGAAGAACTTATTTGTGATTACTTAATGAAGAAAGTTGATCAACAATCCGAATATCAACAACAATACCCTCTTCTCATAGAAGTTGACCTCAATAAATCTGAACCATGGGAAATTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGGCATGTGTTGGAGGGAAGGAGTGGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E367881" ref_strand="+" ref_description="SGN-E367881 [TUS-22-C15]">
      <seq>ttttttttttttttttaaaatgatatttaacaacagcttgagcatggtggaatccaaattaccaccaggatttagattccatccaagagatgaagaacttatttgtgattacttaatgaagaaagttgatcaacaatccgaatatcaacatcaataccctcttctcatagaagttgacctcaataaatctgaaccatgggaaattcctgaagtggcatgtgttggagggaaggagtggtacttttacagccaacgtgaccgataatacgcgacggggcttcgaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="99199" stop="102071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99471" g_stop="99679" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99680" i_stop="101693" i_length="2014">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101694" g_stop="101771" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="287" r_length="78" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E367881" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>287</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99471" e_stop="99679"/>
          <exon e_start="101694" e_stop="101771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCATTTCTCTTCAAAATGAGTAACAACAACAGCTTGAGCATGGTGGAATCCAAATTACCACCAGGATTTAGATTCCATCCAAGAGATGAAGAACTTATTTGTGATTACTTAATGAAGAAAGTTGATCAACAATCCGAATATCAACAACAATACCCTCTTCTCATAGAAGTTGACCTCAATAAATCTGAACCATGGGAAATTCCTGGTACGTTTATACTAATTACTTTTACAGAATCTTATAATTTTTTCGTAGATTCGAATTTATTTCATTCACATCTTTTAATTGATCACACACTTTTATGCTTATATATATGAATTTTTTGTTCGTGCCACATAGTTGGGTTGTGGATCAAGTGATAGCTAGCTAACGGATTGGTCCAAAGTTTTCATTTTTTTGGTTTCTATTTTTCGTGGATAAGAATATCATACACTGCTAATAATAATTGTGATTAGTCTTAATTAGAAAAAAAAAATTTATAATTAAAATTGTCTTCTTCGTTAGCATTAACACTTACCAATTTTAATTTTCTTTATGCTTATTCGTTTGTTCACACTGCGTATGTTAAACGCTCTCAAAGTATTTCTACAATATAGCTTGACTTTCCTGTCTATAACCCAAAGTCTTTAATTTATATTTTCCAAAATAAGTAACCACAGAACATTTATTACCATGGTCCTCCTGCTTTATTATTACTTTTTTTAATAAAAGAAATTAACCATCACATAATAATAATAAACACTTCTCGCTAAAAAATTATATTAAATTTACAAAATTAATTATTTTTATGATTCTCTTTGAGTTGTATTTGTATATGTGAATGATATATGAGATATATACGAATTAATGGTTCTCATAAGGTTTCTCATTCAATTAACTTTTGTAGAAATTGACAGTATTGGCATATTGTGTTGAACCAAAAGATGGTGAAAGCGATAGAGATTAATGCAAATATTGATCAATTAACTTACAACATGGCATATATATCTCTTAAGTGACTTGTGTCGACCACACGCGTGTACATTTATACTCCAATTTAGACAAAATTTAAGTACCATTAATTCTGGTCATAACTTTACCCCGTTTAATTTTAAAGCTATCTTGTCGACATCCTCGATTTTTCTTTTGCCATTAAGAGTGTCTCGATCAGTTTATATCTATCTCGATTAAATTTATTGGATATGTATCTTCAGAGATGGATTAGGGGTGGTAAAAGCGGATTTTCAAGAATTCAATTACTTTTGTGTATGATCGTATATTTATATTAAGAAATATTTTAAATATATTAAAGAAACATTTGTCGAGAATACAATAACAAAGTAGACACTTGGTTCCATTCCTCTTCTTTTTTTCATACTCTACCCATCGATCAGGAGGATCAATAGTGTTCTCACTTATTCTTTTGCATTAATGGTGGGGTATGATTCCGCTTATACACGTACAATAAAATTTTACTTATTTTAATTTTTAAAATCACTAGCTATAAACTCGTTATAAACATCAAAATGTGGATTGACATTTGTATTTTTCCAATACATATATAAATAAAGATAATAGATATCTAATGAAATTAATCGAGGTATTTATGATAAATTTTGGAGATAAGCAAATATATCTCCAATGAAATTAATTGAGCAAAAATTGATCACCTAGCTAGTAATTTTTTGGGGTCAATTTAATCCCTTTATTGTAGGAATATAATTCTTTCTTTTACATATCTATTTTCAAAGGAACAGTAATATACACGCACTATACATGTAGGTTCTTTGAACTTCAAATTTCCCCATCAACATCTTTTACCTAAGCCATTTGCATAAATATGGCCCTCCAATAATTAATTATCTCCATTTTTGGATAGAGATTTTAGCACTTAACCCATGCATAAAAGTTTAGGCTATTTTTTCAAAAATAAAACAGGTCCCCTTCCCTTTTTATCATCATCTTCTTAATTTTCGATAATAATACTATGAAATTGACATATTCCTTTTTCCTTTCATTTTCTCATCCTTTTATTATTTGTTTCTTATGCTACTCAATCCTATCTTCTTATGATGCATGTCACGTCGAAACTTACTATGATTTTCTAGAAACAATCAATCAATATTGAACTATGTAATCATCTCATTTAGACAAAGATCATATCTTTTATTATTACCATTGAATTGTGTAGTACCTAAGCTAAAATTAGTTACTTAATCATAACGTTATATATTATTTACAGAAGTGGCATGTGTTGGAGGGAAGGAGTGGTACTTCTACAGCCAACGTGACCGAAAATACGCGACGGGGCTCCGAACAA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTAAAATGATATTTAACAACAGCTTGAGCATGGTGGAATCCAAATTACCACCAGGATTTAGATTCCATCCAAGAGATGAAGAACTTATTTGTGATTACTTAATGAAGAAAGTTGATCAACAATCCGAATATCAACATCAATACCCTCTTCTCATAGAAGTTGACCTCAATAAATCTGAACCATGGGAAATTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGGCATGTGTTGGAGGGAAGGAGTGGTACTTTTACAGCCAACGTGACCGATAATACGCGACGGGGCTTCGAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E374913" ref_strand="+" ref_description="SGN-E374913 [TUS-15-C15]">
      <seq>ttttttctcttaaaatgagtaacaacaacagcttgagcatggtggaatccaaattaccaccaggatttagattccatccaagagatgaagaacttatttgtgattacttaatgaagaaagttgatcaacaatccgaatatcaacaacaataccctcttctcatagaagttgacctcaataaatctgaaccatgggaaattcctgaagtggcatgtgttggagggaaggagtggtacttctacagccaacgtgaccgaaaatacgcgacggggctccgaacaaacagagccaccgtatctggttactggaaagccaccggaaaagatcgtgcaatcatcagaaaaggaagtctagtaggaatgagaaaaaccctagttttctatcaagggagagccccaaaaggaagaaaaagtgactgggttatgcatgaattccgcctagaacttcccattcgtcctcaaatttcttctatcaaggaggattgggtattatgccgagtatttcacaagaagaaggaattacttgctacaaagcaagaaattggaagcaacaatatatactacgataacgatacaataagttgttcatctctaccaccattaatggatccttacattactttcgaccaaacaaaccctaacaacaataatatgaatatgaatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="99178" stop="104047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99475" g_stop="99679" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99680" i_stop="101693" i_length="2014">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101694" g_stop="101965" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="476" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101966" i_stop="103557" i_length="1592">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103558" g_stop="103747" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="666" r_length="190" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E374913" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99475" e_stop="99679"/>
          <exon e_start="101694" e_stop="101965"/>
          <exon e_start="103558" e_stop="103747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTCTCTTCAAAATGAGTAACAACAACAGCTTGAGCATGGTGGAATCCAAATTACCACCAGGATTTAGATTCCATCCAAGAGATGAAGAACTTATTTGTGATTACTTAATGAAGAAAGTTGATCAACAATCCGAATATCAACAACAATACCCTCTTCTCATAGAAGTTGACCTCAATAAATCTGAACCATGGGAAATTCCTGGTACGTTTATACTAATTACTTTTACAGAATCTTATAATTTTTTCGTAGATTCGAATTTATTTCATTCACATCTTTTAATTGATCACACACTTTTATGCTTATATATATGAATTTTTTGTTCGTGCCACATAGTTGGGTTGTGGATCAAGTGATAGCTAGCTAACGGATTGGTCCAAAGTTTTCATTTTTTTGGTTTCTATTTTTCGTGGATAAGAATATCATACACTGCTAATAATAATTGTGATTAGTCTTAATTAGAAAAAAAAAATTTATAATTAAAATTGTCTTCTTCGTTAGCATTAACACTTACCAATTTTAATTTTCTTTATGCTTATTCGTTTGTTCACACTGCGTATGTTAAACGCTCTCAAAGTATTTCTACAATATAGCTTGACTTTCCTGTCTATAACCCAAAGTCTTTAATTTATATTTTCCAAAATAAGTAACCACAGAACATTTATTACCATGGTCCTCCTGCTTTATTATTACTTTTTTTAATAAAAGAAATTAACCATCACATAATAATAATAAACACTTCTCGCTAAAAAATTATATTAAATTTACAAAATTAATTATTTTTATGATTCTCTTTGAGTTGTATTTGTATATGTGAATGATATATGAGATATATACGAATTAATGGTTCTCATAAGGTTTCTCATTCAATTAACTTTTGTAGAAATTGACAGTATTGGCATATTGTGTTGAACCAAAAGATGGTGAAAGCGATAGAGATTAATGCAAATATTGATCAATTAACTTACAACATGGCATATATATCTCTTAAGTGACTTGTGTCGACCACACGCGTGTACATTTATACTCCAATTTAGACAAAATTTAAGTACCATTAATTCTGGTCATAACTTTACCCCGTTTAATTTTAAAGCTATCTTGTCGACATCCTCGATTTTTCTTTTGCCATTAAGAGTGTCTCGATCAGTTTATATCTATCTCGATTAAATTTATTGGATATGTATCTTCAGAGATGGATTAGGGGTGGTAAAAGCGGATTTTCAAGAATTCAATTACTTTTGTGTATGATCGTATATTTATATTAAGAAATATTTTAAATATATTAAAGAAACATTTGTCGAGAATACAATAACAAAGTAGACACTTGGTTCCATTCCTCTTCTTTTTTTCATACTCTACCCATCGATCAGGAGGATCAATAGTGTTCTCACTTATTCTTTTGCATTAATGGTGGGGTATGATTCCGCTTATACACGTACAATAAAATTTTACTTATTTTAATTTTTAAAATCACTAGCTATAAACTCGTTATAAACATCAAAATGTGGATTGACATTTGTATTTTTCCAATACATATATAAATAAAGATAATAGATATCTAATGAAATTAATCGAGGTATTTATGATAAATTTTGGAGATAAGCAAATATATCTCCAATGAAATTAATTGAGCAAAAATTGATCACCTAGCTAGTAATTTTTTGGGGTCAATTTAATCCCTTTATTGTAGGAATATAATTCTTTCTTTTACATATCTATTTTCAAAGGAACAGTAATATACACGCACTATACATGTAGGTTCTTTGAACTTCAAATTTCCCCATCAACATCTTTTACCTAAGCCATTTGCATAAATATGGCCCTCCAATAATTAATTATCTCCATTTTTGGATAGAGATTTTAGCACTTAACCCATGCATAAAAGTTTAGGCTATTTTTTCAAAAATAAAACAGGTCCCCTTCCCTTTTTATCATCATCTTCTTAATTTTCGATAATAATACTATGAAATTGACATATTCCTTTTTCCTTTCATTTTCTCATCCTTTTATTATTTGTTTCTTATGCTACTCAATCCTATCTTCTTATGATGCATGTCACGTCGAAACTTACTATGATTTTCTAGAAACAATCAATCAATATTGAACTATGTAATCATCTCATTTAGACAAAGATCATATCTTTTATTATTACCATTGAATTGTGTAGTACCTAAGCTAAAATTAGTTACTTAATCATAACGTTATATATTATTTACAGAAGTGGCATGTGTTGGAGGGAAGGAGTGGTACTTCTACAGCCAACGTGACCGAAAATACGCGACGGGGCTCCGAACAAACAGAGCCACCGTATCTGGTTACTGGAAAGCCACCGGAAAAGATCGTGCAATCATCAGAAAAGGAAGTCTAGTAGGAATGAGAAAAACCCTAGTTTTCTATCAAGGGAGAGCCCCAAAAGGAAGAAAAAGTGACTGGGTTATGCATGAATTCCGCCTAGAACTTCCCATTCGTCCTCAAATTTCTTCTATCAAGGTACTCTACCATCTCCAATTGAGTTCTAAATTTAATATTTATATATTTGAACGCACATGTTTATATATACTAATAGAACATCGACTAATAAACCACAGATTTTTTTTTTTGGTAAGTTTTCATAAAATATCATTTACATGTGCAATTGATTTACTTTGGAGTATATATGCTTAGAGAATATTATATATATATATATATATCATATAATACATGCATAAAATTCTATATATATTAAACAAAAAAATTGTATATGTAAAAAAAAGGTAAACTAGTTCTTCTTTGGTCATACTGTCAATTACTTTTGCCGATAAATATGACGAATTGAAGCATTTAGGTCCATAAAAAGTTCATTAATTATTATATTATGAAAAAAAATATATCATAAAAACTATAAAATAAATAAAGTAGATAAAAGTAGTTTTCAATTGAGAGAACTGTCCATTCATATTTAAAAAAAAAAAATTATTTGAGAAATTGTGAAATAAGCATGAATTTAATTTGTCGTTATGAAAAATACAAGTATGTGGCTGTACATAATAAATGACAGTTCATATATATTTATGGCCCATGATAATGAACTTTTGGCTTAATTATCTAAATTATCCTTTTCTCTTGGCCTACTTATAATATAGTAATTGATTAATCCAATCGCTATAAATGCGGTTAAGTTCTTCTTGGAATCTTATTTTATATTCAACTGTAAACATCATTGGAAGTTTCCTCTATCATTTTAAGAATATGGTTTTATGAGTTATGACAAATATGTGAACTATTTTATCTTTTAAAAACTGTATTGGTAGTTGACCAACTTACAACTACTACCTTAAGTCATTTCACTTTTAGGAATTACATATTCACTAAATACAATAATAATAGTAATAATAATAAATATAGTGTAATCTTATGTGAAATTTGAAGAAGGTTGAATATATGTAGATTTAATCTCTATGTTTAGAAGATAGAGAAATTATTCTGCTCAATAGAGATATATCTAATACGGAAAAAAAAGAATATTTTTGACTAGGTATAAACTTTAAACGTTAATTGAAATTATATATAGAATAGGTAGTAGCTAGGAAATACAATAGAACATTATTGTTCTAATTTGATTAATGAATTTGATTCCTTGAAATCCTTGAAAGATTTGTAAACCAATTCATATACTATTATTAAATTATGTCAAATTTTGTGAGACATATCTAGCACAATTATTGTGATATAATATGTTACTAATCAGTGCTACAATGATAAGAAAAATATCTCATGATTCTTTCGTAATCTATGTTTAATCAGAATAAATTCCATTTCTCAATTATTATTTATTTAGATAACAACACAACCTAATTACCTAATCCCCTTGTCCTTGACCACGTCACGTTATTTCAGAAAAATAAACATTTTTTTTCTCATAAAAGAATCAATTACTTGGTGATCATGGATATTATTAAAATTCATTTAATATATATGGAACTTTTTTCTCTCAATTCGTTTAATTCATTTACGTTAATAGTGTAGTATATAGTACATTGATTATTATTATTATTATATTATATTATTAGCGTATAAAAATTGAACTTTTTTTAATGATACAGGAGGATTGGGTATTATGCCGAGTATTTCACAAGAAGAAGGAATTACTTGCTACAAAGCAAGAAATTGGAAGCAACAATATATACTACGATAACGATACAATAAGTTGTTCATCTCTACCACCATTAATGGATCCTTACATTACTTTCGACCAAACAAACCCTAACAACAATAATATGAATATGAATGAAT</genome_strand>
        <mrna_strand>TTTTTTCTCTT-AAAATGAGTAACAACAACAGCTTGAGCATGGTGGAATCCAAATTACCACCAGGATTTAGATTCCATCCAAGAGATGAAGAACTTATTTGTGATTACTTAATGAAGAAAGTTGATCAACAATCCGAATATCAACAACAATACCCTCTTCTCATAGAAGTTGACCTCAATAAATCTGAACCATGGGAAATTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGGCATGTGTTGGAGGGAAGGAGTGGTACTTCTACAGCCAACGTGACCGAAAATACGCGACGGGGCTCCGAACAAACAGAGCCACCGTATCTGGTTACTGGAAAGCCACCGGAAAAGATCGTGCAATCATCAGAAAAGGAAGTCTAGTAGGAATGAGAAAAACCCTAGTTTTCTATCAAGGGAGAGCCCCAAAAGGAAGAAAAAGTGACTGGGTTATGCATGAATTCCGCCTAGAACTTCCCATTCGTCCTCAAATTTCTTCTATCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGATTGGGTATTATGCCGAGTATTTCACAAGAAGAAGGAATTACTTGCTACAAAGCAAGAAATTGGAAGCAACAATATATACTACGATAACGATACAATAAGTTGTTCATCTCTACCACCATTAATGGATCCTTACATTACTTTCGACCAAACAAACCCTAACAACAATAATATGAATATGAATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E200066" ref_strand="+" ref_description="SGN-E200066 [cLEC-8-A22]">
      <seq>acaatccgaatatcaacaacaataccctcttctcatagaagttgacctcaataaatctgaaccatgggaaattcctgaagtggcatgtgttggagggaaggagtggtacttctacagccaacgtgaccgaaaatacgcgacggggctccgaacaaacagagccaccgtatctggttactggaaagccaccggaaaagatcgtgcaatcatcagaaaaggaagtctagtaggaatgagaaaaaccctaattttctatcaagggagagccccaaaaggaagaaaaagtgactgggttatgcatgaattccgcctagaacttcccattcgtcctcaaatttcttctatcaaggaggattgggtattatgccgagtatttcacaagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="99303" stop="103893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99603" g_stop="99679" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99680" i_stop="101693" i_length="2014">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101694" g_stop="101965" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="349" r_length="272" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101966" i_stop="103557" i_length="1592">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103558" g_stop="103593" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="385" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E200066" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99603" e_stop="99679"/>
          <exon e_start="101694" e_stop="101965"/>
          <exon e_start="103558" e_stop="103593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATCCGAATATCAACAACAATACCCTCTTCTCATAGAAGTTGACCTCAATAAATCTGAACCATGGGAAATTCCTGGTACGTTTATACTAATTACTTTTACAGAATCTTATAATTTTTTCGTAGATTCGAATTTATTTCATTCACATCTTTTAATTGATCACACACTTTTATGCTTATATATATGAATTTTTTGTTCGTGCCACATAGTTGGGTTGTGGATCAAGTGATAGCTAGCTAACGGATTGGTCCAAAGTTTTCATTTTTTTGGTTTCTATTTTTCGTGGATAAGAATATCATACACTGCTAATAATAATTGTGATTAGTCTTAATTAGAAAAAAAAAATTTATAATTAAAATTGTCTTCTTCGTTAGCATTAACACTTACCAATTTTAATTTTCTTTATGCTTATTCGTTTGTTCACACTGCGTATGTTAAACGCTCTCAAAGTATTTCTACAATATAGCTTGACTTTCCTGTCTATAACCCAAAGTCTTTAATTTATATTTTCCAAAATAAGTAACCACAGAACATTTATTACCATGGTCCTCCTGCTTTATTATTACTTTTTTTAATAAAAGAAATTAACCATCACATAATAATAATAAACACTTCTCGCTAAAAAATTATATTAAATTTACAAAATTAATTATTTTTATGATTCTCTTTGAGTTGTATTTGTATATGTGAATGATATATGAGATATATACGAATTAATGGTTCTCATAAGGTTTCTCATTCAATTAACTTTTGTAGAAATTGACAGTATTGGCATATTGTGTTGAACCAAAAGATGGTGAAAGCGATAGAGATTAATGCAAATATTGATCAATTAACTTACAACATGGCATATATATCTCTTAAGTGACTTGTGTCGACCACACGCGTGTACATTTATACTCCAATTTAGACAAAATTTAAGTACCATTAATTCTGGTCATAACTTTACCCCGTTTAATTTTAAAGCTATCTTGTCGACATCCTCGATTTTTCTTTTGCCATTAAGAGTGTCTCGATCAGTTTATATCTATCTCGATTAAATTTATTGGATATGTATCTTCAGAGATGGATTAGGGGTGGTAAAAGCGGATTTTCAAGAATTCAATTACTTTTGTGTATGATCGTATATTTATATTAAGAAATATTTTAAATATATTAAAGAAACATTTGTCGAGAATACAATAACAAAGTAGACACTTGGTTCCATTCCTCTTCTTTTTTTCATACTCTACCCATCGATCAGGAGGATCAATAGTGTTCTCACTTATTCTTTTGCATTAATGGTGGGGTATGATTCCGCTTATACACGTACAATAAAATTTTACTTATTTTAATTTTTAAAATCACTAGCTATAAACTCGTTATAAACATCAAAATGTGGATTGACATTTGTATTTTTCCAATACATATATAAATAAAGATAATAGATATCTAATGAAATTAATCGAGGTATTTATGATAAATTTTGGAGATAAGCAAATATATCTCCAATGAAATTAATTGAGCAAAAATTGATCACCTAGCTAGTAATTTTTTGGGGTCAATTTAATCCCTTTATTGTAGGAATATAATTCTTTCTTTTACATATCTATTTTCAAAGGAACAGTAATATACACGCACTATACATGTAGGTTCTTTGAACTTCAAATTTCCCCATCAACATCTTTTACCTAAGCCATTTGCATAAATATGGCCCTCCAATAATTAATTATCTCCATTTTTGGATAGAGATTTTAGCACTTAACCCATGCATAAAAGTTTAGGCTATTTTTTCAAAAATAAAACAGGTCCCCTTCCCTTTTTATCATCATCTTCTTAATTTTCGATAATAATACTATGAAATTGACATATTCCTTTTTCCTTTCATTTTCTCATCCTTTTATTATTTGTTTCTTATGCTACTCAATCCTATCTTCTTATGATGCATGTCACGTCGAAACTTACTATGATTTTCTAGAAACAATCAATCAATATTGAACTATGTAATCATCTCATTTAGACAAAGATCATATCTTTTATTATTACCATTGAATTGTGTAGTACCTAAGCTAAAATTAGTTACTTAATCATAACGTTATATATTATTTACAGAAGTGGCATGTGTTGGAGGGAAGGAGTGGTACTTCTACAGCCAACGTGACCGAAAATACGCGACGGGGCTCCGAACAAACAGAGCCACCGTATCTGGTTACTGGAAAGCCACCGGAAAAGATCGTGCAATCATCAGAAAAGGAAGTCTAGTAGGAATGAGAAAAACCCTAGTTTTCTATCAAGGGAGAGCCCCAAAAGGAAGAAAAAGTGACTGGGTTATGCATGAATTCCGCCTAGAACTTCCCATTCGTCCTCAAATTTCTTCTATCAAGGTACTCTACCATCTCCAATTGAGTTCTAAATTTAATATTTATATATTTGAACGCACATGTTTATATATACTAATAGAACATCGACTAATAAACCACAGATTTTTTTTTTTGGTAAGTTTTCATAAAATATCATTTACATGTGCAATTGATTTACTTTGGAGTATATATGCTTAGAGAATATTATATATATATATATATATCATATAATACATGCATAAAATTCTATATATATTAAACAAAAAAATTGTATATGTAAAAAAAAGGTAAACTAGTTCTTCTTTGGTCATACTGTCAATTACTTTTGCCGATAAATATGACGAATTGAAGCATTTAGGTCCATAAAAAGTTCATTAATTATTATATTATGAAAAAAAATATATCATAAAAACTATAAAATAAATAAAGTAGATAAAAGTAGTTTTCAATTGAGAGAACTGTCCATTCATATTTAAAAAAAAAAAATTATTTGAGAAATTGTGAAATAAGCATGAATTTAATTTGTCGTTATGAAAAATACAAGTATGTGGCTGTACATAATAAATGACAGTTCATATATATTTATGGCCCATGATAATGAACTTTTGGCTTAATTATCTAAATTATCCTTTTCTCTTGGCCTACTTATAATATAGTAATTGATTAATCCAATCGCTATAAATGCGGTTAAGTTCTTCTTGGAATCTTATTTTATATTCAACTGTAAACATCATTGGAAGTTTCCTCTATCATTTTAAGAATATGGTTTTATGAGTTATGACAAATATGTGAACTATTTTATCTTTTAAAAACTGTATTGGTAGTTGACCAACTTACAACTACTACCTTAAGTCATTTCACTTTTAGGAATTACATATTCACTAAATACAATAATAATAGTAATAATAATAAATATAGTGTAATCTTATGTGAAATTTGAAGAAGGTTGAATATATGTAGATTTAATCTCTATGTTTAGAAGATAGAGAAATTATTCTGCTCAATAGAGATATATCTAATACGGAAAAAAAAGAATATTTTTGACTAGGTATAAACTTTAAACGTTAATTGAAATTATATATAGAATAGGTAGTAGCTAGGAAATACAATAGAACATTATTGTTCTAATTTGATTAATGAATTTGATTCCTTGAAATCCTTGAAAGATTTGTAAACCAATTCATATACTATTATTAAATTATGTCAAATTTTGTGAGACATATCTAGCACAATTATTGTGATATAATATGTTACTAATCAGTGCTACAATGATAAGAAAAATATCTCATGATTCTTTCGTAATCTATGTTTAATCAGAATAAATTCCATTTCTCAATTATTATTTATTTAGATAACAACACAACCTAATTACCTAATCCCCTTGTCCTTGACCACGTCACGTTATTTCAGAAAAATAAACATTTTTTTTCTCATAAAAGAATCAATTACTTGGTGATCATGGATATTATTAAAATTCATTTAATATATATGGAACTTTTTTCTCTCAATTCGTTTAATTCATTTACGTTAATAGTGTAGTATATAGTACATTGATTATTATTATTATTATATTATATTATTAGCGTATAAAAATTGAACTTTTTTTAATGATACAGGAGGATTGGGTATTATGCCGAGTATTTCACAAGAAG</genome_strand>
        <mrna_strand>ACAATCCGAATATCAACAACAATACCCTCTTCTCATAGAAGTTGACCTCAATAAATCTGAACCATGGGAAATTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGGCATGTGTTGGAGGGAAGGAGTGGTACTTCTACAGCCAACGTGACCGAAAATACGCGACGGGGCTCCGAACAAACAGAGCCACCGTATCTGGTTACTGGAAAGCCACCGGAAAAGATCGTGCAATCATCAGAAAAGGAAGTCTAGTAGGAATGAGAAAAACCCTAATTTTCTATCAAGGGAGAGCCCCAAAAGGAAGAAAAAGTGACTGGGTTATGCATGAATTCCGCCTAGAACTTCCCATTCGTCCTCAAATTTCTTCTATCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGATTGGGTATTATGCCGAGTATTTCACAAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E395596" ref_strand="-" ref_description="SGN-E395596 [TUS-16-F22]">
      <seq>tcacccctaaccaaactttcacttcccatagccaccacctcccctccgccacaaccgccatcggatctaccgcatacggtggttttccagctgatattggaaattacctaaatgccactgcaacatcctctacgtgtgataataacaaagtaattagagctgttttaagtcatttgagtaccaagaataatattattatggaaggtaataatagcaataacaacaatattatcaatcctgcccaaaatataaaaggaggaaattcacctagctttggtgaaggaagttctgaaactagctttttatttgaggtgggatatcctacaatgtggaacaattattgatttttgagagaaaatattctacttagatgtgtgatataatatatgacaagtcttgttttagttgctagtattatattgtaatcttagaatatatatatataactatactagctagattaatttccaatgcatgtaattccaataatgatactttcctagtggttaaagtatataattgtctcctagatagattggaattctccgtaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="103481" stop="104630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103781" g_stop="104329" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="550" polyA_stop="571"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E395596" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395596" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="103781" e_stop="104329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCCCTAACCAAACTTTCACTTCCCATAGCCACCACCTCCCCTCCGCCACAACCGCCATCGGATCTACCGCATACGGTGGTTTTCCAGCTGATATTGGAAATTACCTAAATGCCACTGCAACATCCTCTACGTGTGATAATAACAAAGTAATTAGAGCTGTTTTAAGTCATTTGAGTACCAAGAATAATATTATTATGGAAGGTAATAATAGCAATAACAACAATATTATCAATCCTGCCCAAAATATAAAAGGAGGAAATTCACCTAGCTTTGGTGAAGGAAGTTCTGAAACTAGCTTTTTATCTGAGGTGGGATATCCTACAATGTGGAACAATTATTGATTTTTGAGAGAAAATATTCTACTTAGATGTGTGATATAATATATGACAAGTCTTGTTTTAGTTGCTAGTATTATATTGTAATCTTAGAATATATATATATAACTATACTAGCTAGATTAATTTCCAATGCATGTAATTCCAATAATGATACTTTCCTAGTGGTTAATGTATATAATTGTCTCCTAGATAGATTGGAATTCTCCGT</genome_strand>
        <mrna_strand>TCACCCCTAACCAAACTTTCACTTCCCATAGCCACCACCTCCCCTCCGCCACAACCGCCATCGGATCTACCGCATACGGTGGTTTTCCAGCTGATATTGGAAATTACCTAAATGCCACTGCAACATCCTCTACGTGTGATAATAACAAAGTAATTAGAGCTGTTTTAAGTCATTTGAGTACCAAGAATAATATTATTATGGAAGGTAATAATAGCAATAACAACAATATTATCAATCCTGCCCAAAATATAAAAGGAGGAAATTCACCTAGCTTTGGTGAAGGAAGTTCTGAAACTAGCTTTTTATTTGAGGTGGGATATCCTACAATGTGGAACAATTATTGATTTTTGAGAGAAAATATTCTACTTAGATGTGTGATATAATATATGACAAGTCTTGTTTTAGTTGCTAGTATTATATTGTAATCTTAGAATATATATATATAACTATACTAGCTAGATTAATTTCCAATGCATGTAATTCCAATAATGATACTTTCCTAGTGGTTAAAGTATATAATTGTCTCCTAGATAGATTGGAATTCTCCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E334312" ref_strand="+" ref_description="SGN-E334312 [cTOD-21-I20]">
      <seq>ctcgtgccgatggaactccggcgacagcatagcctaagctccttcttcagcaaggagaactgagcttaagtatagtaatatctttcaatccgcttgaactttgtagtccaagagaacggagcttttaagctagaaactttaatggagttaactttcccagtgaaagctcagttatttggctccaaaattggtcacaaatctctaagctactcaacttcagtaaaattctaccagaaagtatctcgtcctcaattttcagcatgtggaatcagggttcgttcggaatttgaccataaaatcaatggcgctttctctcctgattctgacgctcggattctcgaccggcaaaaagcattggatgctgcaatgaacgatataaacagctcgtttggcaaaggaagcgttactagattgggtagtgctggcggagctctggttgaaacttttccgagtggctgcttgacgctagactttgctttaggtggtggcattcccaaaggcagaattgttgagatatatgggcccgaaagtagtggaaagactaccttagctctccatgctattgcagaagtacagaagctaggaggcaatgcaatgcttgttgatgctgagcatgcttttgatcctgcatactccaaagcacttggagtagatgtagaagaatttgatcgtctgccagcctgataatggagagatggctctagaatcgcagaccggatgtgtagatcaggtgccgtagatctcatttgcattgattcagtctcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="107585" stop="110029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107884" g_stop="108227" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108228" i_stop="108328" i_length="101">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108329" g_stop="108420" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="437" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108421" i_stop="108615" i_length="195">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108616" g_stop="108691" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="513" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108692" i_stop="109036" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109037" g_stop="109099" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="576" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="109100" i_stop="109412" i_length="313">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109413" g_stop="109542" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="706" r_length="130" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="109543" i_stop="109668" i_length="126">
            <donor d_prob="0.977" d_score="0.94"/>
            <acceptor a_prob="0.835" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="109669" g_stop="109729" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="707" r_stop="767" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E334312" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107884" e_stop="108227"/>
          <exon e_start="108329" e_stop="108420"/>
          <exon e_start="108616" e_stop="108691"/>
          <exon e_start="109037" e_stop="109099"/>
          <exon e_start="109413" e_stop="109542"/>
          <exon e_start="109669" e_stop="109729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCGCC-ATGGAACTCCGGCGACAGCATAGCCTAAGCTCCTTCTTCAGCAAGGAGAACTGAGCTTAAGTATAGTAATATCTTTCAATCCGCTTGAACTTTGTAGTCCAAGAGAACGGAGCTTTTAAGCTAGAAACTTTAATGGAGTTAACTTTCCCAGTGAAAGCTCAGTTATTTGGCTCCAAAATTGGTCACAAATCTCTAAGCTACTCAACTTCAGTAAAATTCTACCAGAAAGTATCTCGTCCTCAATTTTCAGCATGTGGAATCAGGGTTCGTTCGGAATTTGACCATAAAATCAATGGCGCTTTCTCTCCTGATTCTGACGCTCGGATTCTCGACCGGGTATCTCTTTCTCTCTCTACATATGTTTGTATTTATAGTTCTGTATGTTGCTTTACTGAAGAATTCCATGTGACTGACTTCCCTAACTCCTCCTGCTTCAGCAAAAAGCATTGGATGCTGCAATGAACGATATAAACAGCTCGTTTGGCAAAGGAAGCGTTACTAGATTGGGTAGTGCTGGCGGAGCTCTGGTGTATGTAATTTTTTTACTGAATTCAAAAAAAGTTATATTTAGTTTCTGCACAGGAACCATGTCGAAACAAACATGAAATGTTTTGGGGAAAAGAAGCAGAAAATGAAAATGGAGAAAAATATTCTGCCCAAAATTTTGATCATTGTTAGACTATATCATTCTTACAAGCACTTGTGTATCTGCTTCTTTATGCAGTGAAACTTTTCCGAGTGGCTGCTTGACGCTAGACTTTGCTTTAGGTGGTGGCATTCCCAAAGGCAGAATTGTTGAGGTTTAAATTTCTATCTTTTTCATTTGTATTTTCAGTATGCATTAGTTATTACTGGTTATTCGCCATCTATTTGGTTTCAAATGCTTGGCTGCTTAGTTATTACTAACTTTTGGTTTTGATTACACATAGTGGACTAACTCCTACATGAAGATGAATAGAACAGTTATATTGACCTGTTAATAGAGTGAGTGCGTTAGAAATTTACTTATTTCATTAATAGGCTGGGGTATTTGATTCTGATGTTTGTCCACATCCTGAACTTCTCAACTGATGTGAGCATGTGGAATATTAACAAGGTTGCTGCAATTTGTTGTCTAATTGCTTTCCTCATATTTTTCTTTACAGATATATGGGCCCGAAAGTAGTGGAAAGACTACCTTAGCTCTCCATGCTATTGCAGAAGTACAGGTGCAGTATGTGTTTGGTTTATTCTACTCATCAGCTTGGAACTTCTATAGGCATGGGGCTGCACTTGGAAGGGGAGGGGGCATTTGATTGTTTGGATGAAAAAGGAAGTCATATGCTTCTATCTTACAGATGAAGTGAAAGAAAATAATGGACAATTTGGAAGTCTAGAAAGCAAACTTAGAATCCTTTCCAGCATCCATTGGAGCTTTATTATTGTGACCAATCCACTGAAACCACTTGCCTTAGGCTTATTACTGAAAATGTTCTCATGTAAAAGGAGACAGATTATAAAATGTTAAATATTGTTATGCAGAAGCTAGGAGGCAATGCAATGCTTGTTGATGCTGAGCATGCTTTTGATCCTGCATACTCCAAAGCACTTGGAGTAGATGTAG-AGAATTTGATCGTCTGCCAGCCTGATAATGGAGAGATGGCTCTAGAAAGTAACAACTTTTCCTTGTTTACACCATTAGAAATGATTTTTCAGTTTTTTGTGCTAGCAACCTTGTCAATAATCATGGTGGTCTTACTAGAGTTTGTACTTTCAACCAAACTTTTGTCTATCTCAGTCGCAGACCGGATGTGTAGATCAGGTGCCGTAGATCTCATTTGCATTGATTCAGTCTCAGC</genome_strand>
        <mrna_strand>CTCGTGCCGATGGAACTCCGGCGACAGCATAGCCTAAGCTCCTTCTTCAGCAAGGAGAACTGAGCTTAAGTATAGTAATATCTTTCAATCCGCTTGAACTTTGTAGTCCAAGAGAACGGAGCTTTTAAGCTAGAAACTTTAATGGAGTTAACTTTCCCAGTGAAAGCTCAGTTATTTGGCTCCAAAATTGGTCACAAATCTCTAAGCTACTCAACTTCAGTAAAATTCTACCAGAAAGTATCTCGTCCTCAATTTTCAGCATGTGGAATCAGGGTTCGTTCGGAATTTGACCATAAAATCAATGGCGCTTTCTCTCCTGATTCTGACGCTCGGATTCTCGACCGG.....................................................................................................CAAAAAGCATTGGATGCTGCAATGAACGATATAAACAGCTCGTTTGGCAAAGGAAGCGTTACTAGATTGGGTAGTGCTGGCGGAGCTCTGGT...................................................................................................................................................................................................TGAAACTTTTCCGAGTGGCTGCTTGACGCTAGACTTTGCTTTAGGTGGTGGCATTCCCAAAGGCAGAATTGTTGAG.........................................................................................................................................................................................................................................................................................................................................................ATATATGGGCCCGAAAGTAGTGGAAAGACTACCTTAGCTCTCCATGCTATTGCAGAAGTACAG.........................................................................................................................................................................................................................................................................................................................AAGCTAGGAGGCAATGCAATGCTTGTTGATGCTGAGCATGCTTTTGATCCTGCATACTCCAAAGCACTTGGAGTAGATGTAGAAGAATTTGATCGTCTGCCAGCCTGATAATGGAGAGATGGCTCTAG-AA..............................................................................................................................TCGCAGACCGGATGTGTAGATCAGGTGCCGTAGATCTCATTTGCATTGATTCAGTCTCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E746278" ref_strand="+" ref_description="SGN-E746278 [GI|47104776]">
      <seq>ctccggcgacagcatagcctaagctccttcttcagcaaggagaactgagcttaagtatagtaatatctttcaatccgcttgaactttgtagtccaagagaacggagcttttaagctagaaactttaatggagttaactttcccagtgaaagctcagttatttggctccaaaattggtcacaaatctctaagctactcaacttcagtaaaattctaccagaaagtatctcgtcctcaattttcagcatgtggaatcagggttcgttcggaatttgaccataaaatcaatggcgctttctctcctgattctgacgctcggattctcgaccggcaaaaagcattggatgctgcaatgaacgatataaacagctcgtttggcaaaggaagcgttactagattgggtagtgctggcggagctctggttgaaacttttccgagtggctgcttgacgctagactttgctttaggtggtggcattcccaaaggcagaattgttgagatatatgggcccgaaagtagtggaaagactaccttagctctccatgctattgcagaagtacagaagctaggaggcaatgcaatgcttgttgatgctgagcatgcttttgatcctgcatactccaaagcacttggagtagatgtagagaatttgatcgtctgccagcctgataatggagagatggctctagaaatcgcagaccggatgtgtagatcaggtgccgtagatctcatttgcattgattcagtctcagcccttactccacgtgctgaaattgagggagaaatcgggatgcagcaaatgggtttacaagcacgcctgatgagtcaagctttacgtaaaatgtcaggcaatgcctccaaagctggatgtactcttatattcctcaatcagataagatacaagattggtgtttattacggaaatcctgaggtcacaagtggagggattgccttaaagtttttcgcctccgttcgacttgaaatccgttccacagggaagataaaatctgcaaaaggagacgaggaagtgggtattaaggtccgagtgagagttcaaaagagtaaggtttctagaccatacaagcaagcagaatttgaaattatgtttggagaaggagtgagcaagctgggttgtgtattagattgtgcggaactgattgaggtggtggctaagaaaggttcatggtataactacggagagcataggctgggacagggaagagagaaagcattgcaatatttgagagaaaatcctcttctctctgaagaaatagaaaagatggttcggtcatcggtgctagagacaaacgggtttttaggctcttcttcattgaaacatccactgccgcagcttctagaggaagatgcacttcaagagatgcaataacgcggatcagagttctgcttcaattgattatgataacagagcatttttcagccaacattgacatccatatgtgattctacattagaaatgagcaaagttggggacactgccagatttgctttgtatgagaccatttctgtgcactagagattcttgaagaaaggtgtatattcttgtaagctaatggatctttgcacgaagaggaagacacatacatcctgaattaaccaaactgaagaattagagttaaggtggtgaaaaggagtgttagctctttgctgcatattttgtctttgttttggttgtactggtagccaaaattttgaaaatctgaagatttttgcttgtaacatttgcattggaagtaccactctagtgttgcgttggtattattatcccattagctctatgcattaagaaatttagtaaataaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="107598" stop="112990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107898" g_stop="108227" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108228" i_stop="108328" i_length="101">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108329" g_stop="108420" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="422" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108421" i_stop="108615" i_length="195">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108616" g_stop="108691" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="498" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108692" i_stop="109036" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109037" g_stop="109099" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="561" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="109100" i_stop="109412" i_length="313">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109413" g_stop="109542" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="691" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="109543" i_stop="109668" i_length="126">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.835" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="109669" g_stop="109754" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="777" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="109755" i_stop="109844" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="109845" g_stop="109970" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="778" r_stop="903" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="109971" i_stop="110288" i_length="318">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="110289" g_stop="110393" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="904" r_stop="1008" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="110394" i_stop="110482" i_length="89">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="110483" g_stop="110539" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1009" r_stop="1065" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="110540" i_stop="110959" i_length="420">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="110960" g_stop="111022" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1066" r_stop="1128" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="111023" i_stop="111095" i_length="73">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="111096" g_stop="111172" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1129" r_stop="1205" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="111173" i_stop="111648" i_length="476">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="111649" g_stop="111721" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1206" r_stop="1278" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="111722" i_stop="112150" i_length="429">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="112151" g_stop="112689" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1279" r_stop="1817" r_length="539" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1818" polyA_stop="1836"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E746278" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1817</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107898" e_stop="108227"/>
          <exon e_start="108329" e_stop="108420"/>
          <exon e_start="108616" e_stop="108691"/>
          <exon e_start="109037" e_stop="109099"/>
          <exon e_start="109413" e_stop="109542"/>
          <exon e_start="109669" e_stop="109754"/>
          <exon e_start="109845" e_stop="109970"/>
          <exon e_start="110289" e_stop="110393"/>
          <exon e_start="110483" e_stop="110539"/>
          <exon e_start="110960" e_stop="111022"/>
          <exon e_start="111096" e_stop="111172"/>
          <exon e_start="111649" e_stop="111721"/>
          <exon e_start="112151" e_stop="112689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCGGCGACAGCATAGCCTAAGCTCCTTCTTCAGCAAGGAGAACTGAGCTTAAGTATAGTAATATCTTTCAATCCGCTTGAACTTTGTAGTCCAAGAGAACGGAGCTTTTAAGCTAGAAACTTTAATGGAGTTAACTTTCCCAGTGAAAGCTCAGTTATTTGGCTCCAAAATTGGTCACAAATCTCTAAGCTACTCAACTTCAGTAAAATTCTACCAGAAAGTATCTCGTCCTCAATTTTCAGCATGTGGAATCAGGGTTCGTTCGGAATTTGACCATAAAATCAATGGCGCTTTCTCTCCTGATTCTGACGCTCGGATTCTCGACCGGGTATCTCTTTCTCTCTCTACATATGTTTGTATTTATAGTTCTGTATGTTGCTTTACTGAAGAATTCCATGTGACTGACTTCCCTAACTCCTCCTGCTTCAGCAAAAAGCATTGGATGCTGCAATGAACGATATAAACAGCTCGTTTGGCAAAGGAAGCGTTACTAGATTGGGTAGTGCTGGCGGAGCTCTGGTGTATGTAATTTTTTTACTGAATTCAAAAAAAGTTATATTTAGTTTCTGCACAGGAACCATGTCGAAACAAACATGAAATGTTTTGGGGAAAAGAAGCAGAAAATGAAAATGGAGAAAAATATTCTGCCCAAAATTTTGATCATTGTTAGACTATATCATTCTTACAAGCACTTGTGTATCTGCTTCTTTATGCAGTGAAACTTTTCCGAGTGGCTGCTTGACGCTAGACTTTGCTTTAGGTGGTGGCATTCCCAAAGGCAGAATTGTTGAGGTTTAAATTTCTATCTTTTTCATTTGTATTTTCAGTATGCATTAGTTATTACTGGTTATTCGCCATCTATTTGGTTTCAAATGCTTGGCTGCTTAGTTATTACTAACTTTTGGTTTTGATTACACATAGTGGACTAACTCCTACATGAAGATGAATAGAACAGTTATATTGACCTGTTAATAGAGTGAGTGCGTTAGAAATTTACTTATTTCATTAATAGGCTGGGGTATTTGATTCTGATGTTTGTCCACATCCTGAACTTCTCAACTGATGTGAGCATGTGGAATATTAACAAGGTTGCTGCAATTTGTTGTCTAATTGCTTTCCTCATATTTTTCTTTACAGATATATGGGCCCGAAAGTAGTGGAAAGACTACCTTAGCTCTCCATGCTATTGCAGAAGTACAGGTGCAGTATGTGTTTGGTTTATTCTACTCATCAGCTTGGAACTTCTATAGGCATGGGGCTGCACTTGGAAGGGGAGGGGGCATTTGATTGTTTGGATGAAAAAGGAAGTCATATGCTTCTATCTTACAGATGAAGTGAAAGAAAATAATGGACAATTTGGAAGTCTAGAAAGCAAACTTAGAATCCTTTCCAGCATCCATTGGAGCTTTATTATTGTGACCAATCCACTGAAACCACTTGCCTTAGGCTTATTACTGAAAATGTTCTCATGTAAAAGGAGACAGATTATAAAATGTTAAATATTGTTATGCAGAAGCTAGGAGGCAATGCAATGCTTGTTGATGCTGAGCATGCTTTTGATCCTGCATACTCCAAAGCACTTGGAGTAGATGTAGAGAATTTGATCGTCTGCCAGCCTGATAATGGAGAGATGGCTCTAGAAAGTAACAACTTTTCCTTGTTTACACCATTAGAAATGATTTTTCAGTTTTTTGTGCTAGCAACCTTGTCAATAATCATGGTGGTCTTACTAGAGTTTGTACTTTCAACCAAACTTTTGTCTATCTCAGTCGCAGACCGGATGTGTAGATCAGGTGCCGTAGATCTCATTTGCATTGATTCAGTCTCAGCCCTTACTCCACGTGCTGAAATTGAGGTAAGCCAACATTTTAATTTTCTGAATTAATTAGAAAGCTTTAAATTGTTCCCACCAGTTCCTGATTTCACGGTCTCTTATTTTGTGCAGGGAGAAATCGGGATGCAGCAAATGGGTTTACAAGCACGCCTGATGAGTCAAGCTTTACGTAAAATGTCAGGCAATGCCTCCAAAGCTGGATGTACTCTTATATTCCTCAATCAGATAAGATACAAGGTATTCTTGACTTAGAAGTTGCACTGTTCTCTTTTCAAGTACTGAAACGGCAGCCTGGTGCATAAAGCATCTTGCGTTCACTAGGGTCCAGGAAAGGGCCAGATTGGGGTGTGATGTAGATAGCCTACCCTAATGTAAGCATTAGTGGCTGACTCGGTAGAACCCATGAGCTATAGGTCACAGGTGATGGATAATGTTGTCAATGAAAACTTGTCATTCTTGCTTCCATTGTGATTAACTTCATAAACTAGCATATTTCTCATCATAACTTGTGGACTTCACTTGATGAATGGAAGTAATTACTATGTTTCGAATCAGATTGGTGTTTATTACGGAAATCCTGAGGTCACAAGTGGAGGGATTGCCTTAAAGTTTTTCGCCTCCGTTCGACTTGAAATCCGTTCCACAGGGAAGATAAAATCTGTGAGTACAGAACTGCTCAGTCGGCTAGTAGATTTTTTATTTTACTCATTTAAGTCTCTTTATGAAAAAATTGTTGCTCTTCTTTTCAGGCAAAAGGAGACGAGGAAGTGGGTATTAAGGTCCGAGTGAGAGTTCAAAAGAGTAAGGTAAATCTGCTTCACGTCATAATTATTCAATGTGGTGCCATCAGTATTATGTTTGTGGGATGGAATACATATGGTAATGGTTCAGTTATACAAGTGTTCAGTGCTTAAAACTATAAAGCTGACATTTGCATAATAAAAGGTTATCATGGTTATTAAAATTTCCTGCACTGGAAGCATGGTAATTCCACTGTATGATCATTGTAAATAGGGGTATATTGTTGAAGACTTTATGTAGTTACTTTAGCGGTGCATCCACACGGAGGTCTCTTTTAGCGAAAACCTCTATTTATTTTAAAATTCTTTTAGCAAATACGGAGACATGAAAGAAAGTGCCAGTATACAGCTGGTCTTTTACTGTTTGCATCTTCTTGCTGATTATAGTGCCAACATGCTAATTGGTCTTATTATTATCCTTCTTAGGTTTCTAGACCATACAAGCAAGCAGAATTTGAAATTATGTTTGGAGAAGGAGTGAGCAAGCTGGTTTGTGGCATTCTTATCTTTCTTTTCCGTAGTGTTTGGCTCAAATTCTGTTCCTAAAATTGAGTTTTTGCAGGGTTGTGTATTAGATTGTGCGGAACTGATTGAGGTGGTGGCTAAGAAAGGTTCATGGTATAACTACGGAGAGCATAGGTTAGTACATTTTGCAGTTTTTGCTATATTATAGGGACTTCGAAGAAGCTTACTAAACTTTTAATTTATGAAACTCCATATCTCAATAGAAATATTTGCATATTTTTGTCATGACCGCTCAAGATTCTGGGAATTTTCCACATGCTGTACTAGAAGTGACAGAGCTTATACTCGAATGAAAAGAAAACAGCTTAGGAGAATTGATAGATTTCATACTTTATGTGGTTGCTGATGGAAATAATTTGAAGTACTAAGAATAAGCAAGAAATTGACTTTCAATGTGATTGAAAACTGTCTGAGTAACTGATTATTGTTTCAGAAGCTAAGATTAATCAAAGATTTGTCTTATACTTCAGTGAGCTGAGTCTTGCAAGGTTCATTACCAATATTATGTGACTCGGCACTGTTTCTTGATGTTTTACTATATTACTAATCTTGCTTGAGTCAGCCACTGATTCTTGATACGTTTAATGAAGGCTGGGACAGGGAAGAGAGAAAGCATTGCAATATTTGAGAGAAAATCCTCTTCTCTCTGAAGAAATAGAAAAGGTATCCTGCTCTCCTTTTTAGGTGCATTTGGTAAGAGTTTTAGTTGTCATACTGTGTAAGATACTAGTTCAATATCTAAACATAACCTGGGAGGTTTTATATGGAAGTAAATAACCTGATGATAAAAGAGAACTAATAAGCAAACAAAATTCTGTTTGCATATTTGGTATGTTTGTTAGCTGATCTGTTCTGGTGTCTTGAGCTTGTAGGCTGTTATTTTAGATGAAAAAATGATGGAAACTATGACCATTTTATGTGGTCATAGTTTTTGAGCTACAGCAAATGTATTTATGTGGTCATAGTACCTATACACGAAGATAATATTCTTTTATATCGTAGTTATTAGATTAACATATTGAGAGATTTCTTGCACACTGTTTATCAATATTTTGGAGGCGGAGAGATGACATTATCTATCTGCCTGAGCAGATGGTTCGGTCATCGGTGCTAGAGACAAACGGGTTTTTAGGCTCTTCTTCATTGAAACATCCACTGCCGCAGCTTCTAGAGGAAGATGCACTTCAAGAGATGCAATAACGCGGATCAGAGTTCTGCTTCAATTGATTATGATAACAGAGCATTTTTCAGCCAACATTGACATCCATATGTGATTCTACATTAGAAATGAGCAAAGTTGGGGACACTGCCAGATTTGCTTTGTATGAGACCATTTCTGTGCACTAGAGATTCTTGAAGAAAGGTGTATATTCTTGTAAGCTAATGGATCTTTGCACGAAGAGGAAGACACATACATCCTGAATTAACCAAACTGAAGAATTAGAGTTAAGGTGGTGAAAAGGAGTGTTAGCTCTTTGCTGCATATTTTGTCTTTGTTTTGGTTGTACTGGTAGCCAAAATTTTGAAAATCTGAAGATTTTTGCTTGTAACATTTGCATTGGAAGTACCACTCTAGTGTTGCGTTGGTATTATTATCCCATTAGCTCTATGCATTAAGAAATCTAGTAAAT</genome_strand>
        <mrna_strand>CTCCGGCGACAGCATAGCCTAAGCTCCTTCTTCAGCAAGGAGAACTGAGCTTAAGTATAGTAATATCTTTCAATCCGCTTGAACTTTGTAGTCCAAGAGAACGGAGCTTTTAAGCTAGAAACTTTAATGGAGTTAACTTTCCCAGTGAAAGCTCAGTTATTTGGCTCCAAAATTGGTCACAAATCTCTAAGCTACTCAACTTCAGTAAAATTCTACCAGAAAGTATCTCGTCCTCAATTTTCAGCATGTGGAATCAGGGTTCGTTCGGAATTTGACCATAAAATCAATGGCGCTTTCTCTCCTGATTCTGACGCTCGGATTCTCGACCGG.....................................................................................................CAAAAAGCATTGGATGCTGCAATGAACGATATAAACAGCTCGTTTGGCAAAGGAAGCGTTACTAGATTGGGTAGTGCTGGCGGAGCTCTGGT...................................................................................................................................................................................................TGAAACTTTTCCGAGTGGCTGCTTGACGCTAGACTTTGCTTTAGGTGGTGGCATTCCCAAAGGCAGAATTGTTGAG.........................................................................................................................................................................................................................................................................................................................................................ATATATGGGCCCGAAAGTAGTGGAAAGACTACCTTAGCTCTCCATGCTATTGCAGAAGTACAG.........................................................................................................................................................................................................................................................................................................................AAGCTAGGAGGCAATGCAATGCTTGTTGATGCTGAGCATGCTTTTGATCCTGCATACTCCAAAGCACTTGGAGTAGATGTAGAGAATTTGATCGTCTGCCAGCCTGATAATGGAGAGATGGCTCTAGAAA..............................................................................................................................TCGCAGACCGGATGTGTAGATCAGGTGCCGTAGATCTCATTTGCATTGATTCAGTCTCAGCCCTTACTCCACGTGCTGAAATTGAG..........................................................................................GGAGAAATCGGGATGCAGCAAATGGGTTTACAAGCACGCCTGATGAGTCAAGCTTTACGTAAAATGTCAGGCAATGCCTCCAAAGCTGGATGTACTCTTATATTCCTCAATCAGATAAGATACAAG..............................................................................................................................................................................................................................................................................................................................ATTGGTGTTTATTACGGAAATCCTGAGGTCACAAGTGGAGGGATTGCCTTAAAGTTTTTCGCCTCCGTTCGACTTGAAATCCGTTCCACAGGGAAGATAAAATCT.........................................................................................GCAAAAGGAGACGAGGAAGTGGGTATTAAGGTCCGAGTGAGAGTTCAAAAGAGTAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTAGACCATACAAGCAAGCAGAATTTGAAATTATGTTTGGAGAAGGAGTGAGCAAGCTG.........................................................................GGTTGTGTATTAGATTGTGCGGAACTGATTGAGGTGGTGGCTAAGAAAGGTTCATGGTATAACTACGGAGAGCATAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGGACAGGGAAGAGAGAAAGCATTGCAATATTTGAGAGAAAATCCTCTTCTCTCTGAAGAAATAGAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTCGGTCATCGGTGCTAGAGACAAACGGGTTTTTAGGCTCTTCTTCATTGAAACATCCACTGCCGCAGCTTCTAGAGGAAGATGCACTTCAAGAGATGCAATAACGCGGATCAGAGTTCTGCTTCAATTGATTATGATAACAGAGCATTTTTCAGCCAACATTGACATCCATATGTGATTCTACATTAGAAATGAGCAAAGTTGGGGACACTGCCAGATTTGCTTTGTATGAGACCATTTCTGTGCACTAGAGATTCTTGAAGAAAGGTGTATATTCTTGTAAGCTAATGGATCTTTGCACGAAGAGGAAGACACATACATCCTGAATTAACCAAACTGAAGAATTAGAGTTAAGGTGGTGAAAAGGAGTGTTAGCTCTTTGCTGCATATTTTGTCTTTGTTTTGGTTGTACTGGTAGCCAAAATTTTGAAAATCTGAAGATTTTTGCTTGTAACATTTGCATTGGAAGTACCACTCTAGTGTTGCGTTGGTATTATTATCCCATTAGCTCTATGCATTAAGAAATTTAGTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E271963" ref_strand="+" ref_description="SGN-E271963 [cLEM-8-C6]">
      <seq>tccggcgacagcatagcctaagctccttcttcagcaaggagaactgagcttaagtatagtaatatctttcaatccgcttgaactttgtagtccaagagaacggagcttttaagctagaaactttaatggagttaactttcccagtgaaagctcagttatttggctccaaaattggtcacaaatctctaagctactcaacttcagtaaaattctaccagaaagtatctcgtcctcaattttcagcatgtggaatcagggttcgttcggaatttgaccataaaatcaatggcgctttctctcctgattctgacgctcggattctcgaccggcaaaaagcattggatgctgcaatgaacgatataaacagctcgtttggcaaaggaagcgttactagattgggtagtgctggcggagctctggttgaaacttttccgagtggctgcttgacgctagactttgctttaagtggtggcattcccaaaggcagaattgttgagatatatgggcccgaaagtagtggaaagactaccttagctctccatgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="107599" stop="109385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107899" g_stop="108227" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108228" i_stop="108328" i_length="101">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108329" g_stop="108420" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="421" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108421" i_stop="108615" i_length="195">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108616" g_stop="108691" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="497" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108692" i_stop="109036" i_length="345">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109037" g_stop="109085" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="546" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E271963" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107899" e_stop="108227"/>
          <exon e_start="108329" e_stop="108420"/>
          <exon e_start="108616" e_stop="108691"/>
          <exon e_start="109037" e_stop="109085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGGCGACAGCATAGCCTAAGCTCCTTCTTCAGCAAGGAGAACTGAGCTTAAGTATAGTAATATCTTTCAATCCGCTTGAACTTTGTAGTCCAAGAGAACGGAGCTTTTAAGCTAGAAACTTTAATGGAGTTAACTTTCCCAGTGAAAGCTCAGTTATTTGGCTCCAAAATTGGTCACAAATCTCTAAGCTACTCAACTTCAGTAAAATTCTACCAGAAAGTATCTCGTCCTCAATTTTCAGCATGTGGAATCAGGGTTCGTTCGGAATTTGACCATAAAATCAATGGCGCTTTCTCTCCTGATTCTGACGCTCGGATTCTCGACCGGGTATCTCTTTCTCTCTCTACATATGTTTGTATTTATAGTTCTGTATGTTGCTTTACTGAAGAATTCCATGTGACTGACTTCCCTAACTCCTCCTGCTTCAGCAAAAAGCATTGGATGCTGCAATGAACGATATAAACAGCTCGTTTGGCAAAGGAAGCGTTACTAGATTGGGTAGTGCTGGCGGAGCTCTGGTGTATGTAATTTTTTTACTGAATTCAAAAAAAGTTATATTTAGTTTCTGCACAGGAACCATGTCGAAACAAACATGAAATGTTTTGGGGAAAAGAAGCAGAAAATGAAAATGGAGAAAAATATTCTGCCCAAAATTTTGATCATTGTTAGACTATATCATTCTTACAAGCACTTGTGTATCTGCTTCTTTATGCAGTGAAACTTTTCCGAGTGGCTGCTTGACGCTAGACTTTGCTTTAGGTGGTGGCATTCCCAAAGGCAGAATTGTTGAGGTTTAAATTTCTATCTTTTTCATTTGTATTTTCAGTATGCATTAGTTATTACTGGTTATTCGCCATCTATTTGGTTTCAAATGCTTGGCTGCTTAGTTATTACTAACTTTTGGTTTTGATTACACATAGTGGACTAACTCCTACATGAAGATGAATAGAACAGTTATATTGACCTGTTAATAGAGTGAGTGCGTTAGAAATTTACTTATTTCATTAATAGGCTGGGGTATTTGATTCTGATGTTTGTCCACATCCTGAACTTCTCAACTGATGTGAGCATGTGGAATATTAACAAGGTTGCTGCAATTTGTTGTCTAATTGCTTTCCTCATATTTTTCTTTACAGATATATGGGCCCGAAAGTAGTGGAAAGACTACCTTAGCTCTCCATGCTA</genome_strand>
        <mrna_strand>TCCGGCGACAGCATAGCCTAAGCTCCTTCTTCAGCAAGGAGAACTGAGCTTAAGTATAGTAATATCTTTCAATCCGCTTGAACTTTGTAGTCCAAGAGAACGGAGCTTTTAAGCTAGAAACTTTAATGGAGTTAACTTTCCCAGTGAAAGCTCAGTTATTTGGCTCCAAAATTGGTCACAAATCTCTAAGCTACTCAACTTCAGTAAAATTCTACCAGAAAGTATCTCGTCCTCAATTTTCAGCATGTGGAATCAGGGTTCGTTCGGAATTTGACCATAAAATCAATGGCGCTTTCTCTCCTGATTCTGACGCTCGGATTCTCGACCGG.....................................................................................................CAAAAAGCATTGGATGCTGCAATGAACGATATAAACAGCTCGTTTGGCAAAGGAAGCGTTACTAGATTGGGTAGTGCTGGCGGAGCTCTGGT...................................................................................................................................................................................................TGAAACTTTTCCGAGTGGCTGCTTGACGCTAGACTTTGCTTTAAGTGGTGGCATTCCCAAAGGCAGAATTGTTGAG.........................................................................................................................................................................................................................................................................................................................................................ATATATGGGCCCGAAAGTAGTGGAAAGACTACCTTAGCTCTCCATGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E246964" ref_strand="+" ref_description="SGN-E246964 [cLEF-41-G15]">
      <seq>tcttcagcaaggagaactgagcttaagtatagtaatatctttcaatccgcttgaactttgtagtccaagagaacggagcttttaagctagaaactttaatggagttaactttcccagtgaaagctcagttatttggctccaaaattggtcacaaatctctaagctactcaacttcagtaaaattctaccagaaagtatctcgtcctcaattttcagcatgtggaatcagggttcgttcggaatttgaccataaaatcaatggcgctttctctcctgattctgacgctcggattctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="107626" stop="108522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107926" g_stop="108222" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E246964" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>297</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107926" e_stop="108222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCAGCAAGGAGAACTGAGCTTAAGTATAGTAATATCTTTCAATCCGCTTGAACTTTGTAGTCCAAGAGAACGGAGCTTTTAAGCTAGAAACTTTAATGGAGTTAACTTTCCCAGTGAAAGCTCAGTTATTTGGCTCCAAAATTGGTCACAAATCTCTAAGCTACTCAACTTCAGTAAAATTCTACCAGAAAGTATCTCGTCCTCAATTTTCAGCATGTGGAATCAGGGTTCGTTCGGAATTTGACCATAAAATCAATGGCGCTTTCTCTCCTGATTCTGACGCTCGGATTCTCG</genome_strand>
        <mrna_strand>TCTTCAGCAAGGAGAACTGAGCTTAAGTATAGTAATATCTTTCAATCCGCTTGAACTTTGTAGTCCAAGAGAACGGAGCTTTTAAGCTAGAAACTTTAATGGAGTTAACTTTCCCAGTGAAAGCTCAGTTATTTGGCTCCAAAATTGGTCACAAATCTCTAAGCTACTCAACTTCAGTAAAATTCTACCAGAAAGTATCTCGTCCTCAATTTTCAGCATGTGGAATCAGGGTTCGTTCGGAATTTGACCATAAAATCAATGGCGCTTTCTCTCCTGATTCTGACGCTCGGATTCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E714777" ref_strand="+" ref_description="SGN-E714777 [FB12BF05]">
      <seq>agtttttcgcctcctttcgacttgaaatccgttccacagggaagataaaatctgcaaaaggagacgaggaagtgggtattaaggtccgagtgagagttcaaaagagtaaggtttctagaccatacaagcaagcagaatttgaaattatgtttggagaaggagtgagcaagctgggttgtgtattagattgtgcggaactgattgaggtggtggctaagaaaggttcatggtataactacggagagcataggctgggacagggaagagagaaagcattgcaatatttgagagaaaatcctcttctctctgaagaaatagaaaagatggttcggtcatcggtgctagagacaaacgggtttttaggctcttcttcattgaaacatccactgccgcagcttctagaggaagatgcacttcaagagatgcaataacgcggatcagagttctgcttcaattgattatgataacagagcatttttcagccaacattgacatccatatgtgattctacattagaaatgagcaaagttggggacactgccagatttgctttgtatgagaccatttctgtgcactagagattcttgaagaaaggtgtatattcttgtaagctaatggatctttgcacgaagaggaagacacatacatcctgaattaaccaaactgaagaattagagttaaggtggtgaaaaggagtgttagctctttgctgcatattttgtctttgttttggttgtactggtagccaaaattttgaaaatctgaagatttttgcttgtaacatttgcattggaagtaccactctagtgttgcgttggtattattatcccattagctctatgcattaagaaatctagtaaaatatttgtctggtgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="110041" stop="113002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110341" g_stop="110393" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110394" i_stop="110482" i_length="89">
            <donor d_prob="0.803" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110483" g_stop="110539" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="110" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110540" i_stop="110959" i_length="420">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110960" g_stop="111022" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="173" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111023" i_stop="111095" i_length="73">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111096" g_stop="111172" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="250" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111173" i_stop="111648" i_length="476">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111649" g_stop="111721" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="323" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111722" i_stop="112150" i_length="429">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="112151" g_stop="112697" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="871" r_length="548" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="876" polyA_stop="895"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E714777" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>870</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110341" e_stop="110393"/>
          <exon e_start="110483" e_stop="110539"/>
          <exon e_start="110960" e_stop="111022"/>
          <exon e_start="111096" e_stop="111172"/>
          <exon e_start="111649" e_stop="111721"/>
          <exon e_start="112151" e_stop="112697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTTTCGCCTCCGTTCGACTTGAAATCCGTTCCACAGGGAAGATAAAATCTGTGAGTACAGAACTGCTCAGTCGGCTAGTAGATTTTTTATTTTACTCATTTAAGTCTCTTTATGAAAAAATTGTTGCTCTTCTTTTCAGGCAAAAGGAGACGAGGAAGTGGGTATTAAGGTCCGAGTGAGAGTTCAAAAGAGTAAGGTAAATCTGCTTCACGTCATAATTATTCAATGTGGTGCCATCAGTATTATGTTTGTGGGATGGAATACATATGGTAATGGTTCAGTTATACAAGTGTTCAGTGCTTAAAACTATAAAGCTGACATTTGCATAATAAAAGGTTATCATGGTTATTAAAATTTCCTGCACTGGAAGCATGGTAATTCCACTGTATGATCATTGTAAATAGGGGTATATTGTTGAAGACTTTATGTAGTTACTTTAGCGGTGCATCCACACGGAGGTCTCTTTTAGCGAAAACCTCTATTTATTTTAAAATTCTTTTAGCAAATACGGAGACATGAAAGAAAGTGCCAGTATACAGCTGGTCTTTTACTGTTTGCATCTTCTTGCTGATTATAGTGCCAACATGCTAATTGGTCTTATTATTATCCTTCTTAGGTTTCTAGACCATACAAGCAAGCAGAATTTGAAATTATGTTTGGAGAAGGAGTGAGCAAGCTGGTTTGTGGCATTCTTATCTTTCTTTTCCGTAGTGTTTGGCTCAAATTCTGTTCCTAAAATTGAGTTTTTGCAGGGTTGTGTATTAGATTGTGCGGAACTGATTGAGGTGGTGGCTAAGAAAGGTTCATGGTATAACTACGGAGAGCATAGGTTAGTACATTTTGCAGTTTTTGCTATATTATAGGGACTTCGAAGAAGCTTACTAAACTTTTAATTTATGAAACTCCATATCTCAATAGAAATATTTGCATATTTTTGTCATGACCGCTCAAGATTCTGGGAATTTTCCACATGCTGTACTAGAAGTGACAGAGCTTATACTCGAATGAAAAGAAAACAGCTTAGGAGAATTGATAGATTTCATACTTTATGTGGTTGCTGATGGAAATAATTTGAAGTACTAAGAATAAGCAAGAAATTGACTTTCAATGTGATTGAAAACTGTCTGAGTAACTGATTATTGTTTCAGAAGCTAAGATTAATCAAAGATTTGTCTTATACTTCAGTGAGCTGAGTCTTGCAAGGTTCATTACCAATATTATGTGACTCGGCACTGTTTCTTGATGTTTTACTATATTACTAATCTTGCTTGAGTCAGCCACTGATTCTTGATACGTTTAATGAAGGCTGGGACAGGGAAGAGAGAAAGCATTGCAATATTTGAGAGAAAATCCTCTTCTCTCTGAAGAAATAGAAAAGGTATCCTGCTCTCCTTTTTAGGTGCATTTGGTAAGAGTTTTAGTTGTCATACTGTGTAAGATACTAGTTCAATATCTAAACATAACCTGGGAGGTTTTATATGGAAGTAAATAACCTGATGATAAAAGAGAACTAATAAGCAAACAAAATTCTGTTTGCATATTTGGTATGTTTGTTAGCTGATCTGTTCTGGTGTCTTGAGCTTGTAGGCTGTTATTTTAGATGAAAAAATGATGGAAACTATGACCATTTTATGTGGTCATAGTTTTTGAGCTACAGCAAATGTATTTATGTGGTCATAGTACCTATACACGAAGATAATATTCTTTTATATCGTAGTTATTAGATTAACATATTGAGAGATTTCTTGCACACTGTTTATCAATATTTTGGAGGCGGAGAGATGACATTATCTATCTGCCTGAGCAGATGGTTCGGTCATCGGTGCTAGAGACAAACGGGTTTTTAGGCTCTTCTTCATTGAAACATCCACTGCCGCAGCTTCTAGAGGAAGATGCACTTCAAGAGATGCAATAACGCGGATCAGAGTTCTGCTTCAATTGATTATGATAACAGAGCATTTTTCAGCCAACATTGACATCCATATGTGATTCTACATTAGAAATGAGCAAAGTTGGGGACACTGCCAGATTTGCTTTGTATGAGACCATTTCTGTGCACTAGAGATTCTTGAAGAAAGGTGTATATTCTTGTAAGCTAATGGATCTTTGCACGAAGAGGAAGACACATACATCCTGAATTAACCAAACTGAAGAATTAGAGTTAAGGTGGTGAAAAGGAGTGTTAGCTCTTTGCTGCATATTTTGTCTTTGTTTTGGTTGTACTGGTAGCCAAAATTTTGAAAATCTGAAGATTTTTGCTTGTAACATTTGCATTGGAAGTACCACTCTAGTGTTGCGTTGGTATTATTATCCCATTAGCTCTATGCATTAAGAAATCTAGT-AAATATTTGTCT</genome_strand>
        <mrna_strand>AGTTTTTCGCCTCCTTTCGACTTGAAATCCGTTCCACAGGGAAGATAAAATCT.........................................................................................GCAAAAGGAGACGAGGAAGTGGGTATTAAGGTCCGAGTGAGAGTTCAAAAGAGTAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTAGACCATACAAGCAAGCAGAATTTGAAATTATGTTTGGAGAAGGAGTGAGCAAGCTG.........................................................................GGTTGTGTATTAGATTGTGCGGAACTGATTGAGGTGGTGGCTAAGAAAGGTTCATGGTATAACTACGGAGAGCATAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGGACAGGGAAGAGAGAAAGCATTGCAATATTTGAGAGAAAATCCTCTTCTCTCTGAAGAAATAGAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTCGGTCATCGGTGCTAGAGACAAACGGGTTTTTAGGCTCTTCTTCATTGAAACATCCACTGCCGCAGCTTCTAGAGGAAGATGCACTTCAAGAGATGCAATAACGCGGATCAGAGTTCTGCTTCAATTGATTATGATAACAGAGCATTTTTCAGCCAACATTGACATCCATATGTGATTCTACATTAGAAATGAGCAAAGTTGGGGACACTGCCAGATTTGCTTTGTATGAGACCATTTCTGTGCACTAGAGATTCTTGAAGAAAGGTGTATATTCTTGTAAGCTAATGGATCTTTGCACGAAGAGGAAGACACATACATCCTGAATTAACCAAACTGAAGAATTAGAGTTAAGGTGGTGAAAAGGAGTGTTAGCTCTTTGCTGCATATTTTGTCTTTGTTTTGGTTGTACTGGTAGCCAAAATTTTGAAAATCTGAAGATTTTTGCTTGTAACATTTGCATTGGAAGTACCACTCTAGTGTTGCGTTGGTATTATTATCCCATTAGCTCTATGCATTAAGAAATCTAGTAAAATATTTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E716193" ref_strand="+" ref_description="SGN-E716193 [FB16BE06]">
      <seq>ggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttaaaaaaaaaaaaaaaattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaanaanttcggggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114628" stop="79529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114328" g_stop="114177" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="211" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="267" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="320" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="553" r_length="233" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="112820" i_stop="112554" i_length="267">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="112553" g_stop="112531" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="576" r_length="23" r_score="0.652"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="112530" i_stop="112088" i_length="443">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.46"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="112087" g_stop="112024" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="640" r_length="64" r_score="0.469"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E716193" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114328" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
          <exon e_start="112553" e_stop="112531"/>
          <exon e_start="112087" e_stop="112024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGTGTAAGGAATTCCTGCAACGATCTCAAATAACAATAATATATGAGTTCACAGACAAATATTTACTAGATTTCTTAATGCATAGAGCTAATGGGATAATAATACCAACGCAACACTAGAGTGGTACTTCCAATGCAAATGTTACAAGCAAAAATCTTCAGATTTTCAAAATTTTGGCTACCAGTACAACCAAAACAAAGACAAAATATGCAGCAAAGAGCTAACACTCCTTTTCACCACCTTAACTCTAATTCTTCAGTTTGGTTAATTCAGGATGTATGTGTCTTCCTCTTCGTGCAAAGATCCATTAGCTTACAAGAATATACACCTTTCTTCAAGAATCTCTAGTGCACAGAAATGGTCTCATACAAAGCAAATCTGGCAGTGTCCCCAACTTTGCTCATTTCTAATGTAGAATCACATATGGATGTCAATGTTGGCTGAAAAATGCTCTGTTATCATAATCAATTGAAGCAGAACTCTGATCCGCGTTATTGCATCTCTTGAAGTGCATCTTCCTCTAGAAGCTGCGGCAGTGGATGTTTCAATGAAGAAGAGCCTAAAAACCCGTTTGTCTCTAGCACCGATGACCGAACCATCTGCTCAGGCAGATAGATAATGTCATCTCTCCGCCTCCAAAATATTGATAAACAGTGTGCAAGAAATCTCTCAATATGTTAATCTAATAACTACGATATAAAAGAATATTATCTTCGTGTATAGGTA</genome_strand>
        <mrna_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTAAAA...........................................................................................................................................................................................................................................................................AAAAAAAAAAAATTAAAAAAAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAANTTCGGGGGGGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E219602" ref_strand="-" ref_description="SGN-E219602 [cLEL-11-P4]">
      <seq>attaatggaagcatggccttgagagatggggttaatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtacccgctgtgattttactgtccccaatattacatctaatgttgctgtttttataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="113862" stop="34803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113562" g_stop="113506" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="113" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="166" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="399" r_length="233" r_score="0.961"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112820" i_stop="112566" i_length="255">
            <donor d_prob="0.000" d_score="0.84"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="112565" g_stop="112551" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="414" r_length="15" r_score="0.733"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E219602" ref_strand="-">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219602" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113562" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
          <exon e_start="112565" e_stop="112551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGTGTAAGGAATTCCTGCAACGATCTCAAATAACAATAATATATGAGTTCACAGACAAATATTTACTAGATTTCTTAATGCATAGAGCTAATGGGATAATAATACCAACGCAACACTAGAGTGGTACTTCCAATGCAAATGTTACAAGCAAAAATCTTCAGATTTTCAAAATTTTGGCTACCAGTACAACCAAAACAAA</genome_strand>
        <mrna_strand>ATTAATGGAAGCATGGCCTTGAGAGATGGGGTTAATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTACCCGCTGTGATTTTACTGTCCCCAATATTACATCTAATGTTGCTGTTTTTA...............................................................................................................................................................................................................................................................TAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E716122" ref_strand="+" ref_description="SGN-E716122 [FB16AG02]">
      <seq>ggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttataaatcttttaagtttagtcgtgattggattgccaaacagttataagctaatccaatattttgaagtgtaaggaattcctgcaacgatctcaaataacaataatatatgagttcacagacaaatatttactagaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="113856" stop="112380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113556" g_stop="113506" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="107" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="160" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113053" g_stop="112681" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="533" r_length="373" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="534" polyA_stop="552"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E716122" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113556" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGTGTAAGGAATTCCTGCAACGATCTCAAATAACAATAATATATGAGTTCACAGACAAATATTTACTAG</genome_strand>
        <mrna_strand>GGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGTGTAAGGAATTCCTGCAACGATCTCAAATAACAATAATATATGAGTTCACAGACAAATATTTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E736091" ref_strand="+" ref_description="SGN-E736091 [LC04BC04]">
      <seq>ctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttataaatcttttaagtttagtcgtgattggattgccaaacagttataagctaatccaatattttgaagtgtaaggaattcctgcaacgatctcaaataacaataatatatgagttcacagacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114610" stop="112389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114310" g_stop="114177" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="193" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="249" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="302" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112683" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="673" r_length="371" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E736091" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114310" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGTGTAAGGAATTCCTGCAACGATCTCAAATAACAATAATATATGAGTTCACAGACAAATATTTACT</genome_strand>
        <mrna_strand>CTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGTGTAAGGAATTCCTGCAACGATCTCAAATAACAATAATATATGAGTTCACAGACAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E347943" ref_strand="+" ref_description="SGN-E347943 [cTOF-31-J3]">
      <seq>taatgagctcacttgagcctaaaagcaacctttccctctggagatatactcagtgaaagggccttccatcacttactagctcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttataaatcttttaagtttagtcgtgattggattgccaaacagttataagctaatccaatattttgaagtgtaaggaattcctgcaacgatctcaaataacaataatatatgagttcacagacaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114617" stop="112389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114317" g_stop="114177" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.901"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="203" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="259" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="312" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112685" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="681" r_length="369" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E347943" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114317" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAGCTCA-TTGAGCCT-AAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGG-CTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGTGTAAGGAATTCCTGCAACGATCTCAAATAACAATAATATATGAGTTCACAGACAAATATTTA</genome_strand>
        <mrna_strand>TAATGAGCTCACTTGAGCCTAAAAGCAACCTTTCCCTCTGGAGATATACTCAGTGAAAGGGCCTTCCATCACTTACTAGCTCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGTGTAAGGAATTCCTGCAACGATCTCAAATAACAATAATATATGAGTTCACAGACAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E720121" ref_strand="+" ref_description="SGN-E720121 [FC09DE07]">
      <seq>gggcgattggcggccaatcggccgaattgaggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttataaatcttttaagtttagtcgtgattggattgccaaacagttataagctaatccaatattttgaagtgtaaggaattcctgcaacgatctcaaataacaataatatatgagttcacagacnannnanaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114641" stop="112392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114336" g_stop="114177" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="191" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="250" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="306" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="359" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112692" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="721" r_length="362" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="725" polyA_stop="749"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E720121" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114336" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGTGTAAGGAATTCCTGCAACGATCTCAAATAACAATAATATATGAGTTCACAGACAA</genome_strand>
        <mrna_strand>GAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGTGTAAGGAATTCCTGCAACGATCTCAAATAACAATAATATATGAGTTCACAGACNA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E309863" ref_strand="+" ref_description="SGN-E309863 [cLEZ-10-J17]">
      <seq>tgatgtttagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttataaatcttttaagtttagtcgtgattggattgccaaacagttataagctaatccaatattttgaagtgtaaggaattcctgcaacgatctcaaataacaataatatatgagttcacagnnnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="113659" stop="112396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113359" g_stop="113294" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="119" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113053" g_stop="112692" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="481" r_length="362" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="482" polyA_stop="519"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E309863" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113359" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGTGTAAGGAATTCCTGCAACGATCTCAAATAACAATAATATATGAGTTCACAGACAA</genome_strand>
        <mrna_strand>TGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGTGTAAGGAATTCCTGCAACGATCTCAAATAACAATAATATATGAGTTCACAGNNNA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E343784" ref_strand="+" ref_description="SGN-E343784 [cTOF-12-G1]">
      <seq>agcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttataaatcttttaagtttagtcgtgattggattgccaaacagttataagctaatccaatattttgaagtgtaaggaattcctgcaacgatctcaaataacaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114624" stop="112407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114324" g_stop="114177" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="207" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="263" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="316" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112707" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="663" r_length="347" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E343784" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114324" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGTGTAAGGAATTCCTGCAACGATCTCAAATAACAATAATATA</genome_strand>
        <mrna_strand>AGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGTGTAAGGAATTCCTGCAACGATCTCAAATAACAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E744827" ref_strand="+" ref_description="SGN-E744827 [GI|1217641]">
      <seq>atggcaagcacagtaatgagctcattaagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggggctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttagggtcttataaatcttttaagtttagccgtgattggattgccaaacagttataagctaatccaatattttgaagtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114630" stop="112445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114330" g_stop="114177" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="213" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="269" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="322" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112744" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="632" r_length="310" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E744827" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114330" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGTGTA</genome_strand>
        <mrna_strand>ATGGCAAGCACAGTAATGAGCTCATTAAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGGGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGGTCTTATAAATCTTTTAAGTTTAGCCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E734696" ref_strand="+" ref_description="SGN-E734696 [LB13BD08]">
      <seq>aagaagagaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttataaatcttttaagtttagtcgtgattggattgccaaacagttataagctaatccaatattttgaagtgtaaggaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114656" stop="112439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114356" g_stop="114177" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="239" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="295" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="348" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112747" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="655" r_length="307" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="662" polyA_stop="685"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E734696" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114356" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGT</genome_strand>
        <mrna_strand>AAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E711811" ref_strand="+" ref_description="SGN-E711811 [FB03AC04]">
      <seq>gcacagtaatgcgcttattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttataaatcttttaagtttagtcgtgattggattgccaaacagttataagctaatccaatattttgaagtgtaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114623" stop="112439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114323" g_stop="114177" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="206" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="262" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="315" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112747" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="622" r_length="307" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="625" polyA_stop="643"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E711811" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114323" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGT</genome_strand>
        <mrna_strand>GCACAGTAATGCGCTTATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E292205" ref_strand="+" ref_description="SGN-E292205 [cLET-1-J19]">
      <seq>agtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttataaatcttttaagtttagtcgtgattggattgccaaacagttataagctaattccatattttgaagtgtaaggaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114619" stop="112439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114319" g_stop="114177" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="311" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112747" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="618" r_length="307" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E292205" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114319" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGT</genome_strand>
        <mrna_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATTCCATATTTTGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E258339" ref_strand="+" ref_description="SGN-E258339 [cLEG-49-D20]">
      <seq>taatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaagttcttataaatcttttaagtttagtcgcgattggattgcccaacagttataagctaatccaatattttgaagtgtaaagaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114617" stop="112439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114317" g_stop="114177" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="200" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="256" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="309" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112747" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="616" r_length="307" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="619" polyA_stop="635"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E258339" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114317" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGT</genome_strand>
        <mrna_strand>TAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAAGTTCTTATAAATCTTTTAAGTTTAGTCGCGATTGGATTGCCCAACAGTTATAAGCTAATCCAATATTTTGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E200014" ref_strand="+" ref_description="SGN-E200014 [cLEB-9-I7]">
      <seq>gcacgagattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttataaatcttttaagtttagtcgtgattggattgccaaacagttataagctaatccaatattttgaagtgtaaggaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114607" stop="112439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114314" g_stop="114177" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="197" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="253" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="306" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112747" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="613" r_length="307" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="620" polyA_stop="637"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E200014" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114314" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGT</genome_strand>
        <mrna_strand>GCACGAGATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E340400" ref_strand="+" ref_description="SGN-E340400 [cTOF-2-L6]">
      <seq>agtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttataaatcttttaagtttagtcgtgattggattgccaaacagttataagctaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114619" stop="112463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114319" g_stop="114177" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="311" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112764" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="601" r_length="290" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="602" polyA_stop="619"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E340400" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114319" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTA</genome_strand>
        <mrna_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E336773" ref_strand="+" ref_description="SGN-E336773 [cTOE-5-C5]">
      <seq>gagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttataaatcttttaagtttagtcgtgattggattgccaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114613" stop="112476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114313" g_stop="114177" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="196" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="252" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="305" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112776" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="583" r_length="278" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E336773" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114313" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAAC</genome_strand>
        <mrna_strand>GAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E267754" ref_strand="+" ref_description="SGN-E267754 [cLEI-12-L21]">
      <seq>gaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttataaatcttttaagtttagtcgtgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114634" stop="112490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114334" g_stop="114177" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="217" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="273" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="326" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112791" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="589" r_length="263" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="590" polyA_stop="609"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E267754" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114334" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTG</genome_strand>
        <mrna_strand>GAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E730673" ref_strand="+" ref_description="SGN-E730673 [LA24DC11]">
      <seq>cgctatcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttataaatcttttaagtttagtcgtgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114627" stop="112490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114328" g_stop="114177" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="211" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="267" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="320" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112791" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="583" r_length="263" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="584" polyA_stop="593"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E730673" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114328" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTG</genome_strand>
        <mrna_strand>CGCTATCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E733537" ref_strand="+" ref_description="SGN-E733537 [LB10BB06]">
      <seq>ggtaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaacagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttataaatcttttaagtttagtcgtgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114628" stop="112490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114328" g_stop="114177" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="211" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="267" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="320" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112791" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="583" r_length="263" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="584" polyA_stop="593"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E733537" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114328" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTG</genome_strand>
        <mrna_strand>GGTAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAACAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E284177" ref_strand="+" ref_description="SGN-E284177 [cLER-16-C19]">
      <seq>gtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttataaatcttttaagtttagtcgtgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="113640" stop="112490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113340" g_stop="113294" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="100" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113053" g_stop="112791" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="363" r_length="263" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="364" polyA_stop="373"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E284177" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113340" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTG</genome_strand>
        <mrna_strand>GTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E285028" ref_strand="+" ref_description="SGN-E285028 [cLER-19-F17]">
      <seq>ttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttataaatctttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="113523" stop="112502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113306" g_stop="113294" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="66" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113053" g_stop="112796" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="324" r_length="258" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E285028" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113306" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAG</genome_strand>
        <mrna_strand>TTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E345674" ref_strand="+" ref_description="SGN-E345674 [cTOF-18-D21]">
      <seq>gtaataggagataatggcaagcaccagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatnctaatgttgctgtttttaggttcttataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114643" stop="112510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114343" g_stop="114177" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="227" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="283" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="336" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112801" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="591" r_length="255" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E345674" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114343" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATAGGAGAAAATGGCAAGCA-CAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACAT-CTAATGTTGCTG-TTTTAGGTTCTTATAAATCTTTTAAG</genome_strand>
        <mrna_strand>GTAATAGGAGATAATGGCAAGCACCAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATNCTAATGTTGCTGTTTTTAGGTTCTTATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E713882" ref_strand="+" ref_description="SGN-E713882 [FB09DG01]">
      <seq>gaggggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttatannnnnnnaaaaaaaaaaaaaanccctggggggggggccgggaccccatttcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114628" stop="112512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114332" g_stop="114177" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="215" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="271" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="324" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112802" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="576" r_length="252" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="577" polyA_stop="588"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E713882" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114332" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAA</genome_strand>
        <mrna_strand>GAGGGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATANNNNNNNAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E739783" ref_strand="+" ref_description="SGN-E739783 [LC18DD02]">
      <seq>cagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114620" stop="112510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114320" g_stop="114177" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="203" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="259" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="312" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112803" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="563" r_length="251" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E739783" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114320" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTA</genome_strand>
        <mrna_strand>CAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E349035" ref_strand="+" ref_description="SGN-E349035 [cTOF-29-J16]">
      <seq>agtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114619" stop="112510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114319" g_stop="114177" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="311" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112803" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="562" r_length="251" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E349035" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114319" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTA</genome_strand>
        <mrna_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E288448" ref_strand="+" ref_description="SGN-E288448 [cLES-16-J24]">
      <seq>taatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaagttctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114617" stop="112510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114317" g_stop="114177" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="200" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="256" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="309" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112803" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="560" r_length="251" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E288448" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114317" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTA</genome_strand>
        <mrna_strand>TAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAAGTTCTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E299336" ref_strand="+" ref_description="SGN-E299336 [cLET-43-L2]">
      <seq>ccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114555" stop="112510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114255" g_stop="114177" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="138" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="194" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="247" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112803" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="498" r_length="251" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E299336" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114255" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTA</genome_strand>
        <mrna_strand>CCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E268652" ref_strand="+" ref_description="SGN-E268652 [cLEM-9-I17]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattntactgtggataatattacatctaatgttgctgttttaggttcttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114627" stop="112510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112804" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="569" r_length="250" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E268652" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTT</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTNTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E296586" ref_strand="+" ref_description="SGN-E296586 [cLET-39-I15]">
      <seq>ggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="113848" stop="112510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113548" g_stop="113506" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="99" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="152" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113053" g_stop="112804" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="402" r_length="250" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E296586" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113548" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTT</genome_strand>
        <mrna_strand>GGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E288133" ref_strand="+" ref_description="SGN-E288133 [cLES-7-G12]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaagttcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114627" stop="112510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112805" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="568" r_length="249" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E288133" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTT</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAAGTTCTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E284257" ref_strand="+" ref_description="SGN-E284257 [cLER-16-D21]">
      <seq>aatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114616" stop="112510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114316" g_stop="114177" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="199" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="255" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="308" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112805" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="557" r_length="249" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E284257" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114316" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTT</genome_strand>
        <mrna_strand>AATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E348544" ref_strand="+" ref_description="SGN-E348544 [cTOF-30-F8]">
      <seq>cttcttcttccttcaaaagttgtggctagtggtgttaagaagcttaagacctgacaaaaccctatggaattaaatggaagcatggccttgagatatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggataccagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgnttgctgttttaaggttcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114539" stop="112510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114239" g_stop="114177" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="0.87"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="126" r_length="60" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="183" r_length="57" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="236" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112805" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="487" r_length="251" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E348544" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114239" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCTTCCTTCAAA-GTTGTGGCTAGTGGTGTTAAGAAGCTTAAGA-CTGAC-AAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATT-AATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATA-CAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATG-TTGCTGTTTT-AGGTTCTTATAAATCTTT</genome_strand>
        <mrna_strand>CTTCTTCTTCCTTCAAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACCTGACAAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAAATGGAAGCATGGCCTTGAGATATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACCAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGNTTGCTGTTTTAAGGTTCTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E348657" ref_strand="+" ref_description="SGN-E348657 [cTOF-30-F7]">
      <seq>taataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114642" stop="112510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114342" g_stop="114177" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="225" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="281" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="334" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112806" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="582" r_length="248" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E348657" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114342" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTT</genome_strand>
        <mrna_strand>TAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E324020" ref_strand="+" ref_description="SGN-E324020 [cTOC-3-A5]">
      <seq>agaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114650" stop="112518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114350" g_stop="114177" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="233" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="289" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="342" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112807" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="589" r_length="247" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E324020" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114350" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCT</genome_strand>
        <mrna_strand>AGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E247418" ref_strand="+" ref_description="SGN-E247418 [cLEF-46-H6]">
      <seq>gaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaagttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114649" stop="112518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114349" g_stop="114177" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="232" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="288" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="341" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112807" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="588" r_length="247" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E247418" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114349" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCT</genome_strand>
        <mrna_strand>GAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAAGTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E290078" ref_strand="+" ref_description="SGN-E290078 [cLET-5-M18]">
      <seq>aaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagatgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114648" stop="112518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114348" g_stop="114177" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="231" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="287" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="340" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112807" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="587" r_length="247" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E290078" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114348" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCT</genome_strand>
        <mrna_strand>AAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGATGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E735845" ref_strand="+" ref_description="SGN-E735845 [LC03BE02]">
      <seq>cgaagaagagaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114656" stop="112518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114358" g_stop="114177" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="241" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="297" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="350" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112808" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="596" r_length="246" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E735845" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114358" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATC</genome_strand>
        <mrna_strand>CGAAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E740374" ref_strand="+" ref_description="SGN-E740374 [LC21AF09]">
      <seq>caatagagaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114652" stop="112518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114357" g_stop="114177" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="239" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="295" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="348" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112808" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="594" r_length="246" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E740374" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114357" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATC</genome_strand>
        <mrna_strand>CAA-TAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E739372" ref_strand="+" ref_description="SGN-E739372 [LC17AG04]">
      <seq>aagatgagaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114656" stop="112518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114356" g_stop="114177" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="239" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="295" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="348" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112808" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="594" r_length="246" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E739372" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114356" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATC</genome_strand>
        <mrna_strand>AAGATGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E713592" ref_strand="+" ref_description="SGN-E713592 [FB09AC06]">
      <seq>ggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114644" stop="112518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114344" g_stop="114177" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="227" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="283" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="336" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112808" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="582" r_length="246" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E713592" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114344" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATC</genome_strand>
        <mrna_strand>GGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E277419" ref_strand="+" ref_description="SGN-E277419 [cLER-3-F7]">
      <seq>agtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattgtactggggataatattacatctaatgttgctggtttaggttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114619" stop="112518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114319" g_stop="114177" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="311" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112808" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="557" r_length="246" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E277419" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114319" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATC</genome_strand>
        <mrna_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTGTACTGGGGATAATATTACATCTAATGTTGCTGGTTTAGGTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E295473" ref_strand="+" ref_description="SGN-E295473 [cLET-23-C6]">
      <seq>agtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114619" stop="112518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114319" g_stop="114177" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="311" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112808" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="557" r_length="246" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E295473" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114319" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATC</genome_strand>
        <mrna_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E285171" ref_strand="+" ref_description="SGN-E285171 [cLER-20-O4]">
      <seq>agtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattctactgtggataatattaacatctaatgttgctgttttaggttcttataaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114619" stop="112508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114319" g_stop="114177" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="311" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112808" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="558" r_length="247" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E285171" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114319" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATT-ACATCTAATGTTGCTGTTTTAGGTTCTTATAAATC</genome_strand>
        <mrna_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTCTACTGTGGATAATATTAACATCTAATGTTGCTGTTTTAGGTTCTTATAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E289483" ref_strand="+" ref_description="SGN-E289483 [cLET-3-A11]">
      <seq>gttgatgcctcaagcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="113651" stop="112518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113532" g_stop="113506" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="83" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="136" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113053" g_stop="112808" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="382" r_length="246" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E289483" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113532" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATC</genome_strand>
        <mrna_strand>GTTGATGCCTCAAGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E345575" ref_strand="+" ref_description="SGN-E345575 [cTOF-18-P2]">
      <seq>acaagaagagaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattntactgtggataatattacatctaatgttgctgttttaggttcttataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114658" stop="112510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114358" g_stop="114177" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="241" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="297" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="350" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112810" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="594" r_length="244" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E345575" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114358" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAA</genome_strand>
        <mrna_strand>ACAAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTNTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E733721" ref_strand="+" ref_description="SGN-E733721 [LB10DA12]">
      <seq>cgctagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114627" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114328" g_stop="114177" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="211" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="267" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="320" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112810" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="564" r_length="244" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E733721" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114328" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAA</genome_strand>
        <mrna_strand>CGCTAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E735130" ref_strand="+" ref_description="SGN-E735130 [LB14CB01]">
      <seq>ggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114628" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114328" g_stop="114177" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="211" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="267" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="320" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112810" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="564" r_length="244" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E735130" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114328" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAA</genome_strand>
        <mrna_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E293933" ref_strand="+" ref_description="SGN-E293933 [cLET-13-K6]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaagcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattntactgtggataatattacatctaatggtgctgttttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114627" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112810" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="563" r_length="244" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E293933" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293933" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAA</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAAGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTNTACTGTGGATAATATTACATCTAATGGTGCTGTTTTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E345913" ref_strand="+" ref_description="SGN-E345913 [cTOF-24-H1]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgnttgctgttttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114627" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112810" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="564" r_length="245" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E345913" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATG-TTGCTGTTTTAGGTTCTTATAAA</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGNTTGCTGTTTTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E295490" ref_strand="+" ref_description="SGN-E295490 [cLET-23-I4]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114627" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112810" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="563" r_length="244" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E295490" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAA</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E293877" ref_strand="+" ref_description="SGN-E293877 [cLET-13-E15]">
      <seq>cacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctggtttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114622" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114322" g_stop="114177" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="205" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="261" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="314" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112810" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="558" r_length="244" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E293877" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114322" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAA</genome_strand>
        <mrna_strand>CACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGGTTTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E348893" ref_strand="+" ref_description="SGN-E348893 [cTOF-29-E17]">
      <seq>ttgagcctaagccaactttcactctggagaaaaatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattaccatctaatgtttgctgttttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114606" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114306" g_stop="114177" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="187" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="243" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="296" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112810" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="542" r_length="246" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E348893" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114306" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTA-CATCTAATG-TTGCTGTTTTAGGTTCTTATAAA</genome_strand>
        <mrna_strand>TTGAGCCT-AAGCCAACTTTCACTCTGGAGAAAA-ATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACCATCTAATGTTTGCTGTTTTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E732754" ref_strand="+" ref_description="SGN-E732754 [LB03AB08]">
      <seq>aagaagagaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttctannaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114656" stop="112510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114356" g_stop="114177" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="239" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="295" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="348" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112811" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="591" r_length="243" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="592" polyA_stop="604"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E732754" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114356" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAA</genome_strand>
        <mrna_strand>AAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTANNAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E344528" ref_strand="+" ref_description="SGN-E344528 [cTOF-14-H14]">
      <seq>agaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttataaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114650" stop="112510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114350" g_stop="114177" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="233" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="289" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="342" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112811" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="585" r_length="243" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="586" polyA_stop="605"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E344528" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114350" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAA</genome_strand>
        <mrna_strand>AGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E732830" ref_strand="+" ref_description="SGN-E732830 [LB03BA10]">
      <seq>cgggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttaaaaaaaaaaaccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114628" stop="112510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114330" g_stop="114177" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="213" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="269" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="322" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112811" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="565" r_length="243" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="575" polyA_stop="589"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E732830" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114330" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAA</genome_strand>
        <mrna_strand>CGGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E317662" ref_strand="+" ref_description="SGN-E317662 [cTOB-8-C23]">
      <seq>ggcaagcacagtaatgagctcatggggcctaaagccaactttggctctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgagattttactgtggataatattacatctaatgttgctgttttaggttcttaaaaaaaaaaaaaaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114628" stop="112510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114328" g_stop="114177" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="211" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="267" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="320" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112811" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="563" r_length="243" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="564" polyA_stop="578"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E317662" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114328" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAA</genome_strand>
        <mrna_strand>GGCAAGCACAGTAATGAGCTCATGGGGCCTAAAGCCAACTTTGGCTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGAGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E737285" ref_strand="+" ref_description="SGN-E737285 [LC09AF03]">
      <seq>ggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttannaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114628" stop="112510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114328" g_stop="114177" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="211" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="267" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="320" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112811" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="563" r_length="243" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="564" polyA_stop="580"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E737285" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114328" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAA</genome_strand>
        <mrna_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTANNA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E738114" ref_strand="+" ref_description="SGN-E738114 [LC12BG04]">
      <seq>ggctagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114628" stop="112510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114328" g_stop="114177" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="211" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="267" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="320" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112811" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="563" r_length="243" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="564" polyA_stop="580"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E738114" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114328" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAA</genome_strand>
        <mrna_strand>GGCTAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E296225" ref_strand="+" ref_description="SGN-E296225 [cLET-24-M18]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114627" stop="112510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112811" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="562" r_length="243" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="563" polyA_stop="573"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E296225" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAA</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E200115" ref_strand="+" ref_description="SGN-E200115 [cLEB-7-F17]">
      <seq>gcacgagagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114613" stop="112510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114323" g_stop="114177" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="311" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112811" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="554" r_length="243" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="555" polyA_stop="567"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E200115" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114323" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAA</genome_strand>
        <mrna_strand>GCAC-G--A-GAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E294833" ref_strand="+" ref_description="SGN-E294833 [cLET-17-N10]">
      <seq>agtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaatggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgctatccttgtattgtactattaagtttaagatgtattccatgttatctcttcaaaatatttcttggcatcttcattaatatgtaaatgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114619" stop="112510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114319" g_stop="114177" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="311" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112811" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="554" r_length="243" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="555" polyA_stop="565"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E294833" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114319" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAA</genome_strand>
        <mrna_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAT............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGCTATCCTTGTATTGTACTATTAAGTTTAAGATGTATTCCATGTTATCTCTTCAAAATATTTCTTGGCATCTTCATTAATATGTAAATGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E297922" ref_strand="+" ref_description="SGN-E297922 [cLET-38-O8]">
      <seq>agtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttaaaaaaaaaaaaaataaaaaaaaaaanaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114619" stop="112510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114319" g_stop="114177" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="311" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112811" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="554" r_length="243" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="555" polyA_stop="576"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E297922" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114319" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAA</genome_strand>
        <mrna_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E222397" ref_strand="-" ref_description="SGN-E222397 [cLEL-16-M4]">
      <seq>aagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaaaatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114524" stop="112510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114224" g_stop="114177" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="107" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="163" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="216" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112811" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="459" r_length="243" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="460" polyA_stop="475"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E222397" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222397" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="114224" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAA</genome_strand>
        <mrna_strand>AAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAAAATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E339158" ref_strand="+" ref_description="SGN-E339158 [cTOF-6-H17]">
      <seq>ttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114521" stop="112510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114221" g_stop="114177" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="104" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="160" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="213" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112811" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="456" r_length="243" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="457" polyA_stop="475"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E339158" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114221" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAA</genome_strand>
        <mrna_strand>TTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E293891" ref_strand="+" ref_description="SGN-E293891 [cLET-13-K17]">
      <seq>aagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttataaannnnaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114501" stop="112510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114201" g_stop="114177" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="84" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="140" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="193" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112811" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="436" r_length="243" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="442" polyA_stop="456"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E293891" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114201" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAA</genome_strand>
        <mrna_strand>AAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E230491" ref_strand="-" ref_description="SGN-E230491 [cLEL-35-L20]">
      <seq>gcctcaggcagcaagccctagggaaagggtgtgtaccaaaatgtttgcaaatatgaagctaatgttgatgcatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacccaagtgctttggcgcaatacatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttcttataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="113652" stop="112510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113526" g_stop="113506" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="77" r_length="56" r_score="0.911"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="130" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113053" g_stop="112811" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="373" r_length="243" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="374" polyA_stop="389"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E230491" ref_strand="-">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230491" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113526" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAA</genome_strand>
        <mrna_strand>GCCTCAGGCAGCAAGCCCTAG............................................................................................................................................................GGAAAGGGTGTGTACCAAAATGTTTGCAAATATGAAGCTAATGTTGATGCATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACCCAAGTGCTTTGGCGCAATACATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E346919" ref_strand="+" ref_description="SGN-E346919 [cTOF-32-J3]">
      <seq>tgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttctaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="113641" stop="112510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113341" g_stop="113294" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="101" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113053" g_stop="112811" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="344" r_length="243" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="345" polyA_stop="365"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E346919" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113341" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAA</genome_strand>
        <mrna_strand>TGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E222306" ref_strand="-" ref_description="SGN-E222306 [cLEL-16-M2]">
      <seq>cagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattggactattaagtttaagttgtagtccatgttatcttttcaaaatatttctaggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttctcacaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="113520" stop="112510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113220" g_stop="113165" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113053" g_stop="112811" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="299" r_length="243" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="300" polyA_stop="313"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E222306" ref_strand="-">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222306" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113220" e_stop="113165"/>
          <exon e_start="113053" e_stop="112811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAA</genome_strand>
        <mrna_strand>CAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGGACTATTAAGTTTAAGTTGTAGTCCATGTTATCTTTTCAAAATATTTCTAGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTCACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E339223" ref_strand="+" ref_description="SGN-E339223 [cTOF-4-A4]">
      <seq>caagaagagaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattntactgtggataatattacatctaatgttgctgttttaggttcaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114657" stop="112512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114357" g_stop="114177" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="240" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="296" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="349" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112812" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="591" r_length="242" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E339223" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114357" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATA</genome_strand>
        <mrna_strand>CAAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTNTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E291302" ref_strand="+" ref_description="SGN-E291302 [cLET-2-M3]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114627" stop="112514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112813" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="560" r_length="241" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E291302" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTAT</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E322593" ref_strand="+" ref_description="SGN-E322593 [cTOB-26-C5]">
      <seq>cacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114622" stop="112518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114322" g_stop="114177" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="205" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="261" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="314" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112813" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="555" r_length="241" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E322593" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114322" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTAT</genome_strand>
        <mrna_strand>CACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E293993" ref_strand="+" ref_description="SGN-E293993 [cLET-13-P23]">
      <seq>aagagaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatggtatccttgtattggactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgctgctgatttaggttctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114653" stop="112514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114353" g_stop="114177" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="236" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="292" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="345" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112814" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="585" r_length="240" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E293993" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114353" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTA</genome_strand>
        <mrna_strand>AAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGGTATCCTTGTATTGGACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGCTGCTGATTTAGGTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E284063" ref_strand="+" ref_description="SGN-E284063 [cLER-13-C16]">
      <seq>tcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagctgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggggatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaaggttaagttgcattccatggtatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgcgattgtactgtggataatattacatctaatgttgctgttttaggttctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114609" stop="112514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114309" g_stop="114177" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="192" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="248" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="301" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112814" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="541" r_length="240" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E284063" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114309" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTA</genome_strand>
        <mrna_strand>TCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGCTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGGGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGGTTAAGTTGCATTCCATGGTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGCGATTGTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E228362" ref_strand="+" ref_description="SGN-E228362 [cLED-3-D13]">
      <seq>ctagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114545" stop="112514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114245" g_stop="114177" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="128" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="184" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="237" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112814" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="477" r_length="240" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E228362" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114245" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTA</genome_strand>
        <mrna_strand>CTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E277270" ref_strand="+" ref_description="SGN-E277270 [cLEL-3-M20]">
      <seq>gcacgagtaaaacagcaacattagatgtaatattatccacagtaaaatcacagcaattacatattaatgaagatgccacagaaatattttgaaaagataacatggaatacaacttaaacttaatagtacaatacaaggataacatctattgcgccaaagcacttgtgttgtagacaaggagagcacctcctgcaagaatgccaagcaaggtcaccgcccatatggctaagccagtggtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="112522" stop="113353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112814" g_stop="113053" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-E277270" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>240</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112814" e_stop="113053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGAACCTAAAACAGCAACATTAGATGTAATATTATCCACAGTAAAATCACAGCAATTACATATTAATGAAGATGCCA-AGAAATATTTTGAAAAGATAACATGGAATACAACTTAAACTTAATAGTACAATACAAGGATAACATCTATTGCGCCAAAGCACTTGTGTTGTAGACAAGGAGAGCACCTCCTGCAAGAATGCCAAGCAAGGTCACCGCCCATATGGCTAAGCCAGTGGTAC</genome_strand>
        <mrna_strand>GCACGA-GTAAAACAGCAACATTAGATGTAATATTATCCACAGTAAAATCACAGCAATTACATATTAATGAAGATGCCACAGAAATATTTTGAAAAGATAACATGGAATACAACTTAAACTTAATAGTACAATACAAGGATAACATCTATTGCGCCAAAGCACTTGTGTTGTAGACAAGGAGAGCACCTCCTGCAAGAATGCCAAGCAAGGTCACCGCCCATATGGCTAAGCCAGTGGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E286734" ref_strand="+" ref_description="SGN-E286734 [cLES-14-L9]">
      <seq>atgagctcattgagcttaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattatactgtggataatattacatctaatgttgctgttttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114615" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114315" g_stop="114177" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="198" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="254" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="307" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112816" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="545" r_length="238" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E286734" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114315" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCT</genome_strand>
        <mrna_strand>ATGAGCTCATTGAGCTTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTATACTGTGGATAATATTACATCTAATGTTGCTGTTTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E322454" ref_strand="+" ref_description="SGN-E322454 [cTOB-26-M17]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaaatgtgctgttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114627" stop="112525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112818" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="555" r_length="236" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E322454" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTT</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAAATGTGCTGTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E308234" ref_strand="+" ref_description="SGN-E308234 [cLEY-14-P8]">
      <seq>aagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114625" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114325" g_stop="114177" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="208" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="264" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="317" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112818" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="553" r_length="236" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E308234" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114325" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTT</genome_strand>
        <mrna_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E720212" ref_strand="+" ref_description="SGN-E720212 [FC10AE12]">
      <seq>aatcggccgaattaattggagcacaagaagagaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114671" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114371" g_stop="114177" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="204" r_length="195" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="263" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="319" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="372" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="605" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="609" polyA_stop="659"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E720212" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114371" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAATTGGAGCACAAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AATTAATTGGAGCACAAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E735091" ref_strand="+" ref_description="SGN-E735091 [LB14BF07]">
      <seq>actagaagagaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114658" stop="112518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114358" g_stop="114177" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="241" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="297" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="350" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="583" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="587" polyA_stop="599"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E735091" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114358" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>ACTAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E732535" ref_strand="+" ref_description="SGN-E732535 [LB02BG07]">
      <seq>cgataaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114649" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114352" g_stop="114177" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="234" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="290" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="343" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="576" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="577" polyA_stop="586"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E732535" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114352" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>CGAT-AAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E733417" ref_strand="+" ref_description="SGN-E733417 [LB04DG03]">
      <seq>agagaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114652" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114352" g_stop="114177" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="235" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="291" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="344" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="577" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="578" polyA_stop="589"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E733417" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114352" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E311482" ref_strand="+" ref_description="SGN-E311482 [cLEZ-18-F16]">
      <seq>agaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttnaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114650" stop="112525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114350" g_stop="114177" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="233" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="289" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="342" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="575" r_length="233" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E311482" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114350" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTNAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E291300" ref_strand="+" ref_description="SGN-E291300 [cLET-2-K23]">
      <seq>agaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgtttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114650" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114350" g_stop="114177" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="233" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="289" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="342" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="575" r_length="233" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E291300" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114350" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E238411" ref_strand="+" ref_description="SGN-E238411 [cLED-17-L3]">
      <seq>gaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctggtttaggttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114649" stop="112518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114349" g_stop="114177" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="232" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="288" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="341" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="574" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="578" polyA_stop="590"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E238411" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114349" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>GAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGGTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E228504" ref_strand="+" ref_description="SGN-E228504 [cLED-3-P3]">
      <seq>gaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114649" stop="112518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114349" g_stop="114177" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="232" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="288" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="341" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="574" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="578" polyA_stop="590"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E228504" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114349" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>GAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E290709" ref_strand="+" ref_description="SGN-E290709 [cLET-10-G16]">
      <seq>aaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114648" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114348" g_stop="114177" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="231" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="287" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="340" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="573" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E290709" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114348" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E299209" ref_strand="+" ref_description="SGN-E299209 [cLET-43-E7]">
      <seq>aaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114648" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114348" g_stop="114177" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="231" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="287" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="340" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="573" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E299209" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114348" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E293345" ref_strand="-" ref_description="SGN-E293345 [cLET-18-K11]">
      <seq>aggtaataggagaaaatggcaagctcagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114645" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114345" g_stop="114177" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="228" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="284" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="337" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="570" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="571" polyA_stop="589"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E293345" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293345" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="114345" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AGGTAATAGGAGAAAATGGCAAGCTCAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E734777" ref_strand="+" ref_description="SGN-E734777 [LB13CC06]">
      <seq>gagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114636" stop="112518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114336" g_stop="114177" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="219" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="275" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="328" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="561" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="565" polyA_stop="581"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E734777" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114336" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>GAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E734902" ref_strand="+" ref_description="SGN-E734902 [LB13DF04]">
      <seq>gagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114636" stop="112518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114336" g_stop="114177" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="219" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="275" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="328" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="561" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="565" polyA_stop="581"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E734902" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114336" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>GAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E284319" ref_strand="+" ref_description="SGN-E284319 [cLER-16-L10]">
      <seq>agaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgtnnaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114635" stop="112526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114335" g_stop="114177" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="218" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="274" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="327" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="560" r_length="233" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E284319" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114335" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTNNAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E292934" ref_strand="+" ref_description="SGN-E292934 [cLET-11-J6]">
      <seq>aaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttacttgggataatattacatctaatgttgctgttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114633" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114333" g_stop="114177" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="216" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="272" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="325" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="558" r_length="233" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E292934" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114333" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTTGGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E729508" ref_strand="+" ref_description="SGN-E729508 [LA21BB05]">
      <seq>ggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114628" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114328" g_stop="114177" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="211" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="267" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="320" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="553" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E729508" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114328" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E732712" ref_strand="+" ref_description="SGN-E732712 [LB02DG01]">
      <seq>ggctagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttanaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114628" stop="112518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114328" g_stop="114177" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="211" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="267" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="320" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="553" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="557" polyA_stop="574"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E732712" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114328" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>GGCTAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E291825" ref_strand="+" ref_description="SGN-E291825 [cLET-7-E14]">
      <seq>ggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114628" stop="112518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114328" g_stop="114177" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="211" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="267" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="320" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="553" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="557" polyA_stop="569"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E291825" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114328" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E728036" ref_strand="+" ref_description="SGN-E728036 [LA16CA10]">
      <seq>ggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114628" stop="112518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114328" g_stop="114177" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="211" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="267" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="320" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="553" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="557" polyA_stop="570"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E728036" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114328" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E277651" ref_strand="+" ref_description="SGN-E277651 [cLER-6-I16]">
      <seq>gcttgcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctggtttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114627" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="552" r_length="233" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E277651" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>GCTTGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGGTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E733739" ref_strand="+" ref_description="SGN-E733739 [LB10DC06]">
      <seq>ccgatcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttanaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114626" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="552" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="553" polyA_stop="571"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E733739" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>CCGATCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E202901" ref_strand="+" ref_description="SGN-E202901 [cLEB-1-N7]">
      <seq>gcacgagcagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114627" stop="112518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="552" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="556" polyA_stop="572"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E202901" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>GCACGAGCAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E348555" ref_strand="+" ref_description="SGN-E348555 [cTOF-30-J22]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatngttgctgttttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114627" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="553" r_length="234" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="554" polyA_stop="570"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E348555" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAAT-GTTGCTGTTTTAG</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATNGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E290793" ref_strand="+" ref_description="SGN-E290793 [cLET-10-K11]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114627" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="552" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="553" polyA_stop="567"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E290793" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E347080" ref_strand="+" ref_description="SGN-E347080 [cTOF-25-D24]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114627" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="552" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E347080" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E299405" ref_strand="+" ref_description="SGN-E299405 [cLET-43-G24]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114627" stop="112518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="552" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="556" polyA_stop="572"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E299405" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E716392" ref_strand="+" ref_description="SGN-E716392 [FB16DF12]">
      <seq>cttgcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagattaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttatcaaactgggacttgtccatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114623" stop="112509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114326" g_stop="114177" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="209" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="265" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="318" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="551" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E716392" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114326" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>CTTGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGATTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E297705" ref_strand="+" ref_description="SGN-E297705 [cLET-28-A6]">
      <seq>caagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgctttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114626" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114326" g_stop="114177" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="209" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="265" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="318" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="551" r_length="233" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E297705" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114326" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>CAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGCTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E294122" ref_strand="+" ref_description="SGN-E294122 [cLET-13-D19]">
      <seq>caagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114626" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114326" g_stop="114177" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="209" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="265" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="318" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="551" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E294122" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114326" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>CAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E300516" ref_strand="+" ref_description="SGN-E300516 [cLET-45-N6]">
      <seq>aagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattggactattaagtgtaagctgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattctactgtggataatattacatctaatgttgctgttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114625" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114325" g_stop="114177" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="208" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="264" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="317" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="550" r_length="233" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E300516" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300516" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114325" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGGACTATTAAGTGTAAGCTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTCTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E285234" ref_strand="+" ref_description="SGN-E285234 [cLER-20-F10]">
      <seq>aagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114625" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114325" g_stop="114177" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="208" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="264" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="317" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="550" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="551" polyA_stop="560"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E285234" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114325" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E732625" ref_strand="+" ref_description="SGN-E732625 [LB02CG07]">
      <seq>aagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114625" stop="112518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114325" g_stop="114177" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="208" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="264" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="317" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="550" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="554" polyA_stop="577"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E732625" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114325" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E346998" ref_strand="+" ref_description="SGN-E346998 [cTOF-25-A16]">
      <seq>agcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcacaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114624" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114324" g_stop="114177" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="207" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="263" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="316" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="549" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E346998" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114324" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCACAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E340082" ref_strand="+" ref_description="SGN-E340082 [cTOF-3-L23]">
      <seq>agcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114624" stop="112518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114324" g_stop="114177" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="207" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="263" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="316" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="549" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="553" polyA_stop="568"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E340082" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114324" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E733746" ref_strand="+" ref_description="SGN-E733746 [LB10DD01]">
      <seq>cgcattaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114622" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114322" g_stop="114177" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="205" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="261" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="314" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="547" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E733746" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114322" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>CGCATTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E716042" ref_strand="+" ref_description="SGN-E716042 [FB15DH04]">
      <seq>cagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114620" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114320" g_stop="114177" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="203" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="259" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="312" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="545" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E716042" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114320" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>CAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E289624" ref_strand="+" ref_description="SGN-E289624 [cLET-4-H23]">
      <seq>agtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactgggctagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattntactgtggataatattacatctaatggtgctggtttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114619" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114319" g_stop="114177" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="311" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="544" r_length="233" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="545" polyA_stop="554"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E289624" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114319" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGGCTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTNTACTGTGGATAATATTACATCTAATGGTGCTGGTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E341815" ref_strand="+" ref_description="SGN-E341815 [cTOF-9-M18]">
      <seq>agtaatgagctcacttgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattntactgtggataatattacatctaatgttgctgttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114619" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114319" g_stop="114177" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="203" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="259" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="312" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="545" r_length="233" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E341815" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114319" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCA-TTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AGTAATGAGCTCACTTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTNTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E293553" ref_strand="+" ref_description="SGN-E293553 [cLET-15-F19]">
      <seq>taatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgctttgcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114617" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114317" g_stop="114177" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="200" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="256" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="309" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="542" r_length="233" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="543" polyA_stop="556"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E293553" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114317" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>TAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTTGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E293554" ref_strand="+" ref_description="SGN-E293554 [cLET-15-F19]">
      <seq>taatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgctttgcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114617" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114317" g_stop="114177" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="200" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="256" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="309" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="542" r_length="233" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="543" polyA_stop="556"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E293554" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114317" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>TAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTTGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E729929" ref_strand="+" ref_description="SGN-E729929 [LA22CB08]">
      <seq>tgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114614" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114314" g_stop="114177" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="197" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="253" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="306" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="539" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E729929" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114314" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>TGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E200557" ref_strand="+" ref_description="SGN-E200557 [cLEB-8-H22]">
      <seq>gcacgagtgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctcaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114611" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114311" g_stop="114177" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="195" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="251" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="303" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="536" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="537" polyA_stop="556"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E200557" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114311" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTC-ATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>GCACGAGTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCT-CAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E734792" ref_strand="+" ref_description="SGN-E734792 [LB13CD09]">
      <seq>gctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114611" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114311" g_stop="114177" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="194" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="250" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="303" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="536" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="537" polyA_stop="546"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E734792" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114311" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>GCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E734293" ref_strand="+" ref_description="SGN-E734293 [LB12BB08]">
      <seq>aaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114575" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114275" g_stop="114177" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="158" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="214" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="267" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="500" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="501" polyA_stop="510"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E734293" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114275" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E218289" ref_strand="-" ref_description="SGN-E218289 [cLEL-23-H15]">
      <seq>gggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaacccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114561" stop="112518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114261" g_stop="114177" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="145" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="201" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="254" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="487" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="491" polyA_stop="509"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E218289" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218289" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="114261" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAA-CCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>GGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E226376" ref_strand="-" ref_description="SGN-E226376 [cLEL-26-A18]">
      <seq>tcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114540" stop="112518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114240" g_stop="114177" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="123" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="179" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="232" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="465" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="469" polyA_stop="489"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E226376" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226376" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="114240" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>TCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E228900" ref_strand="-" ref_description="SGN-E228900 [cLEL-29-M18]">
      <seq>agttgtggctagtggtgttaagaagcttaagactgacaaacccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114523" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114223" g_stop="114177" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="107" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="163" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="216" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="449" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="450" polyA_stop="467"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E228900" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228900" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="114223" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAA-CCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E226451" ref_strand="-" ref_description="SGN-E226451 [cLEL-26-A18]">
      <seq>agttgtggctagtggtgttagaagcttaagactgacaaaccctatgaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114523" stop="112518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114223" g_stop="114177" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="104" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="160" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="213" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="446" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="450" polyA_stop="470"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E226451" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226451" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="114223" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AGTTGTGGCTAGTGGTGTT-AGAAGCTTAAGACTGACAAACCCTAT-....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E235093" ref_strand="-" ref_description="SGN-E235093 [cLEL-6-E18]">
      <seq>agcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="113853" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113553" g_stop="113506" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="104" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="157" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="390" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="391" polyA_stop="406"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E235093" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235093" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113553" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E234613" ref_strand="-" ref_description="SGN-E234613 [cLEL-6-E18]">
      <seq>gcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="113852" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113552" g_stop="113506" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="103" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="156" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="389" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="390" polyA_stop="405"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E234613" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234613" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113552" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>GCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E288405" ref_strand="+" ref_description="SGN-E288405 [cLES-16-J11]">
      <seq>ggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcatgcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctggtttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="113848" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113548" g_stop="113506" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="99" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="152" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="385" r_length="233" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="386" polyA_stop="397"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E288405" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113548" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>GGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATGCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGGTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E296248" ref_strand="+" ref_description="SGN-E296248 [cLET-24-F6]">
      <seq>agagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgtttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="113841" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113541" g_stop="113506" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="92" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="145" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="378" r_length="233" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E296248" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113541" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E217789" ref_strand="-" ref_description="SGN-E217789 [cLEL-23-H15]">
      <seq>gatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="113838" stop="112518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113538" g_stop="113506" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="89" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="142" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="375" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="379" polyA_stop="397"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E217789" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217789" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113538" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>GATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E294253" ref_strand="+" ref_description="SGN-E294253 [cLET-14-I12]">
      <seq>atggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgtttttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="113837" stop="112523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113537" g_stop="113506" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="88" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="141" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="374" r_length="233" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="375" polyA_stop="392"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E294253" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113537" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>ATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E228996" ref_strand="-" ref_description="SGN-E228996 [cLEL-29-M18]">
      <seq>tggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccattctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatctttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="113836" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113536" g_stop="113506" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="87" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="141" r_length="54" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="375" r_length="234" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="376" polyA_stop="393"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E228996" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228996" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113536" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCA-TCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATC-TTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>TGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATTCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E221007" ref_strand="-" ref_description="SGN-E221007 [cLEL-22-J11]">
      <seq>tggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="113836" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113536" g_stop="113506" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="87" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="140" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="373" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="374" polyA_stop="389"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E221007" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221007" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113536" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>TGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E230392" ref_strand="-" ref_description="SGN-E230392 [cLEL-35-G13]">
      <seq>tggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="113836" stop="112518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113536" g_stop="113506" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="87" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="140" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="373" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="377" polyA_stop="395"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E230392" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230392" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113536" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>TGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E230828" ref_strand="-" ref_description="SGN-E230828 [cLEL-35-G12]">
      <seq>ggttatgcctcaggcagaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttgaaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaataaatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="113651" stop="112518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113533" g_stop="113506" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="82" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="135" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="368" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="372" polyA_stop="390"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E230828" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230828" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113533" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>GGTT-ATGCCTCAGGCA-GAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGAAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAAATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E222803" ref_strand="-" ref_description="SGN-E222803 [cLEL-16-K12]">
      <seq>ctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaaatatggagctaatgttaatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttgaaggtaccactggcttatccatatgggcggtgaccttgcttggcattcatgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtaatggactattaagtttaacttgtattccatgtttgcttttccaaatatttcttggcgtcgtcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="113824" stop="112518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113524" g_stop="113506" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="76" r_length="57" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="129" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="362" r_length="233" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="366" polyA_stop="383"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E222803" ref_strand="-">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222803" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113524" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGAC-AAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>CTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAAATATGGAGCTAATGTTAATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGAAG...............................................................................................................GTACCACTGGCTTATCCATATGGGCGGTGACCTTGCTTGGCATTCATGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTAATGGACTATTAAGTTTAACTTGTATTCCATGTTTGCTTTTCCAAATATTTCTTGGCGTCGTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E230467" ref_strand="-" ref_description="SGN-E230467 [cLEL-35-G12]">
      <seq>aagcccaagggaaagggtgtgtcccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="113651" stop="112518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113514" g_stop="113506" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="65" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="118" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="351" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="355" polyA_stop="373"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E230467" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230467" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113514" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTCCCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E222550" ref_strand="-" ref_description="SGN-E222550 [cLEL-16-K10]">
      <seq>agcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttgaaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="113651" stop="112518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113513" g_stop="113506" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="64" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="117" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="350" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="354" polyA_stop="372"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E222550" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222550" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113513" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGAAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E217911" ref_strand="-" ref_description="SGN-E217911 [cLEL-23-D3]">
      <seq>agcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaaccaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="113651" stop="112518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113513" g_stop="113506" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="64" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="117" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="350" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="360" polyA_stop="387"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E217911" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217911" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113513" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E285747" ref_strand="-" ref_description="SGN-E285747 [cLES-5-K5]">
      <seq>gcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="113651" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113512" g_stop="113506" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="63" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="116" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="349" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="350" polyA_stop="379"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E285747" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285747" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113512" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>GCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E218131" ref_strand="-" ref_description="SGN-E218131 [cLEL-23-D3]">
      <seq>aagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaataaatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaaaacccaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="113646" stop="112518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113346" g_stop="113294" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="106" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="339" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="350" polyA_stop="376"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E218131" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218131" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113346" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAAATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E230896" ref_strand="-" ref_description="SGN-E230896 [cLEL-35-G13]">
      <seq>aaatatggagctaatgttgatggatacagtccccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaggttaacaacacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="113622" stop="112518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113322" g_stop="113294" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="83" r_length="54" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="316" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="326" polyA_stop="338"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E230896" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230896" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113322" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGT-CCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>AAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E286594" ref_strand="+" ref_description="SGN-E286594 [cLES-12-A12]">
      <seq>acacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttngctgttttannnaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="113506" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113206" g_stop="113165" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="276" r_length="234" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="279" polyA_stop="298"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E286594" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>275</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113206" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTT-GCTGTTTTAG</genome_strand>
        <mrna_strand>ACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTNGCTGTTTTAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E227868" ref_strand="-" ref_description="SGN-E227868 [cLEL-39-P6]">
      <seq>tgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttcctgtggataatattacatctaatgttgctgttttcaaccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="113333" stop="112523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113033" g_stop="112821" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="217" polyA_stop="234"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E227868" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>213</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227868" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113033" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>TGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTCCTGTGGATAATATTACATCTAATGTTGCTGTTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E226297" ref_strand="-" ref_description="SGN-E226297 [cLEL-26-D3]">
      <seq>ggcacgaggcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="113306" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113015" g_stop="112821" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="195" polyA_stop="210"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E226297" ref_strand="-">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>195</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226297" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113015" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>GGCACGA-GGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E226662" ref_strand="-" ref_description="SGN-E226662 [cLEL-26-D3]">
      <seq>ggcacgaggcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="113306" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113015" g_stop="112821" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="195" polyA_stop="210"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E226662" ref_strand="-">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>195</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226662" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113015" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>GGCACGA-GGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E226668" ref_strand="-" ref_description="SGN-E226668 [cLEL-26-D14]">
      <seq>gtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatctttcaaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttttaaaaaaaataaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="113299" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112999" g_stop="112821" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="180" polyA_stop="194"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E226668" ref_strand="-">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>179</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226668" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="112999" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG</genome_strand>
        <mrna_strand>GTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTCAAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E295250" ref_strand="+" ref_description="SGN-E295250 [cLET-20-K16]">
      <seq>tggcaagcacagtaatgatctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattctactgtggataatattacatctaatgttgctgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114629" stop="112524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114329" g_stop="114177" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="212" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="268" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="321" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112824" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="551" r_length="230" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E295250" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114329" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTT</genome_strand>
        <mrna_strand>TGGCAAGCACAGTAATGATCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTCTACTGTGGATAATATTACATCTAATGTTGCTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E320131" ref_strand="+" ref_description="SGN-E320131 [cTOB-21-B4]">
      <seq>cacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgaatttactgtggataatattacatctaatgttgctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114622" stop="112526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114322" g_stop="114177" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="205" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="261" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="314" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112826" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="542" r_length="228" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E320131" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114322" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGT</genome_strand>
        <mrna_strand>CACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGAATTTACTGTGGATAATATTACATCTAATGTTGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E739529" ref_strand="+" ref_description="SGN-E739529 [LC17DC09]">
      <seq>aagaagagaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataaaaaaaaataaaaagttgctgtggggggtcccggaaccaaattccccctttgggggggcgcataaaacccatttccccctata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114656" stop="112526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114356" g_stop="114177" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="239" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="295" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="348" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112828" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="574" r_length="226" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E739529" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114356" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCT</genome_strand>
        <mrna_strand>AAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAAAAAAAAATAAAAAGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E281801" ref_strand="+" ref_description="SGN-E281801 [cLER-14-N15]">
      <seq>agaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattntactgtggataatattacatctaatgttgctgttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114635" stop="112525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114335" g_stop="114177" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="218" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="274" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="327" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112828" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="553" r_length="226" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="557" polyA_stop="566"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E281801" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114335" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCT</genome_strand>
        <mrna_strand>AGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTNTACTGTGGATAATATTACATCTAATGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E279699" ref_strand="+" ref_description="SGN-E279699 [cLER-5-H7]">
      <seq>agaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114635" stop="112528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114335" g_stop="114177" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="218" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="274" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="327" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112828" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="553" r_length="226" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E279699" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114335" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCT</genome_strand>
        <mrna_strand>AGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E340004" ref_strand="+" ref_description="SGN-E340004 [cTOF-3-C2]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114627" stop="112528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112828" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="545" r_length="226" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E340004" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCT</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E300542" ref_strand="+" ref_description="SGN-E300542 [cLET-45-I13]">
      <seq>aagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaagaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttacttgggataatattacatctaatggtgcttgtttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114625" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114325" g_stop="114177" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="208" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="264" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="317" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112828" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="543" r_length="226" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="549" polyA_stop="560"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E300542" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114325" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCT</genome_strand>
        <mrna_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAAGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTTGGGATAATATTACATCTAATGGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E298936" ref_strand="+" ref_description="SGN-E298936 [cLET-42-A2]">
      <seq>agtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattggactattaagtttaagctgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattctactgtggataatattacatctaatgttgcttgtttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114619" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114319" g_stop="114177" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="311" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112828" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="537" r_length="226" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="543" polyA_stop="555"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E298936" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114319" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCT</genome_strand>
        <mrna_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGGACTATTAAGTTTAAGCTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTCTACTGTGGATAATATTACATCTAATGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E295544" ref_strand="+" ref_description="SGN-E295544 [cLET-23-J7]">
      <seq>agctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgcttgtttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114612" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114312" g_stop="114177" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="195" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="251" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="304" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112828" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="530" r_length="226" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="536" polyA_stop="549"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E295544" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114312" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCT</genome_strand>
        <mrna_strand>AGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E290297" ref_strand="+" ref_description="SGN-E290297 [cLET-5-L16]">
      <seq>tcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgcgattttactgtggataatattacatctaatgttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114587" stop="112528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114287" g_stop="114177" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="170" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="226" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="279" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112828" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="505" r_length="226" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E290297" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114287" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCT</genome_strand>
        <mrna_strand>TCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGCGATTTTACTGTGGATAATATTACATCTAATGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E717328" ref_strand="+" ref_description="SGN-E717328 [FB19DE07]">
      <seq>gttaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114567" stop="112525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114267" g_stop="114177" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="150" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="206" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="259" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112828" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="485" r_length="226" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="489" polyA_stop="502"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E717328" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114267" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCT</genome_strand>
        <mrna_strand>GTTAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E292332" ref_strand="+" ref_description="SGN-E292332 [cLET-1-A24]">
      <seq>gcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatacatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114559" stop="112535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114259" g_stop="114177" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="142" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="198" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="251" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112830" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="475" r_length="224" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E292332" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114259" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTG</genome_strand>
        <mrna_strand>GCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATACATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E341917" ref_strand="+" ref_description="SGN-E341917 [cTOF-9-M2]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattcccatgttatcttttcaaattatttcttggcatcttcattaatattgaaattgctgtgattttactgtggatattattacattctaatgttggctggtttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114627" stop="112522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112831" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="545" r_length="226" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="555" polyA_stop="564"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E341917" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATT-CCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATA-TGTAATTGCTGTGATTTTACTGTGGATAATATTACA-TCTAATGTT</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCCATGTTATCTTTTCAAATTATTTCTTGGCATCTTCATTAATATTGAAATTGCTGTGATTTTACTGTGGATATTATTACATTCTAATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E340209" ref_strand="+" ref_description="SGN-E340209 [cTOF-2-O8]">
      <seq>gctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114611" stop="112540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114311" g_stop="114177" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113543" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="157" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113542" i_stop="112989" i_length="554">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112988" g_stop="112831" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="315" r_length="158" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E340209" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114311" e_stop="114177"/>
          <exon e_start="113564" e_stop="113543"/>
          <exon e_start="112988" e_stop="112831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTT</genome_strand>
        <mrna_strand>GCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E341755" ref_strand="+" ref_description="SGN-E341755 [cTOF-9-G13]">
      <seq>gctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114611" stop="112540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114311" g_stop="114177" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113543" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="157" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113542" i_stop="112989" i_length="554">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112988" g_stop="112831" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="315" r_length="158" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E341755" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114311" e_stop="114177"/>
          <exon e_start="113564" e_stop="113543"/>
          <exon e_start="112988" e_stop="112831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTT</genome_strand>
        <mrna_strand>GCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E341837" ref_strand="+" ref_description="SGN-E341837 [cTOF-9-H13]">
      <seq>gctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114611" stop="112540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114311" g_stop="114177" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113543" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="157" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113542" i_stop="112989" i_length="554">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112988" g_stop="112831" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="315" r_length="158" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E341837" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114311" e_stop="114177"/>
          <exon e_start="113564" e_stop="113543"/>
          <exon e_start="112988" e_stop="112831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTT</genome_strand>
        <mrna_strand>GCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E286439" ref_strand="+" ref_description="SGN-E286439 [cLES-12-C15]">
      <seq>aaaatggcccgcacagacaagagctcatggagcctgaagaccactctcactctggagaaaatatcattgcaagggctagcatcacttactgaatcttgttctcccttcaaagctgaggctagtggtgttaatactcttaagactgacaaaccctatggaattaacggaagcatggccttgagagatggggtcgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttaaccatatgggcggtgaccttgcttggcattcttgcacgaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114616" stop="112540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114333" g_stop="114177" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.854"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="216" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="272" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="325" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112833" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="546" r_length="221" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E286439" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114333" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATG</genome_strand>
        <mrna_strand>AAAATGGCCCGCACAGACAAGAGCTCATGGAGCCTGAAGACCACTCTCACTCTGGAGAAAATATCATTGCAAGGGCTAGCATCACTTACTGAATCTTGTTCTCCCTTCAAAGCTGAGGCTAGTGGTGTTAATACTCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAACGGAAGCATGGCCTTGAGAGATGGGGTCGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAACCATATGGGCGGTGACCTTGCTTGGCATTCTTGCACGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E296255" ref_strand="+" ref_description="SGN-E296255 [cLET-24-H6]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcacgcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgggattttactgtggataatattacatctaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114627" stop="112533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112833" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="540" r_length="221" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E296255" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATG</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCACGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGGGATTTTACTGTGGATAATATTACATCTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E292899" ref_strand="+" ref_description="SGN-E292899 [cLET-11-N17]">
      <seq>agtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattntactgtggataatattacatctaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114619" stop="112533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114319" g_stop="114177" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="311" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112833" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="532" r_length="221" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E292899" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114319" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATG</genome_strand>
        <mrna_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTNTACTGTGGATAATATTACATCTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E285788" ref_strand="+" ref_description="SGN-E285788 [cLES-5-K18]">
      <seq>taatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114617" stop="112533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114317" g_stop="114177" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="200" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="256" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="309" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112833" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="530" r_length="221" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E285788" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114317" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATG</genome_strand>
        <mrna_strand>TAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E271907" ref_strand="+" ref_description="SGN-E271907 [cLEM-8-L20]">
      <seq>gaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaagcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaagaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114649" stop="112534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114349" g_stop="114177" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="232" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="288" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="341" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112834" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="561" r_length="220" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E271907" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114349" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAAT</genome_strand>
        <mrna_strand>GAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAAGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAAGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E291033" ref_strand="+" ref_description="SGN-E291033 [cLET-8-A1]">
      <seq>aaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttgattaatatgtaattgctgtgattttactgtggataatattacatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114648" stop="112534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114348" g_stop="114177" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="231" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="287" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="340" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112834" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="560" r_length="220" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E291033" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114348" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAAT</genome_strand>
        <mrna_strand>AAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTGATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E735129" ref_strand="+" ref_description="SGN-E735129 [LB14CA12]">
      <seq>gaggggctagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctannaaaaaaaaaaaaaaaaaaaaaaaaaancccccgggggggggccgggaccccatttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114628" stop="112536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114332" g_stop="114177" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="215" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="271" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="324" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112834" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="544" r_length="220" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="552" polyA_stop="571"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E735129" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114332" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAAT</genome_strand>
        <mrna_strand>GAGGGGCTAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTANN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E711506" ref_strand="+" ref_description="SGN-E711506 [FB02AG07]">
      <seq>ccggtaagcacagtaatgagctcattgagcctaaagccaacttccactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114628" stop="112540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114330" g_stop="114177" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="213" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="269" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="322" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112834" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="542" r_length="220" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E711506" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114330" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAAT</genome_strand>
        <mrna_strand>CCGGTAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTCCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E734990" ref_strand="+" ref_description="SGN-E734990 [LB14AE09]">
      <seq>ggctagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctannaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114628" stop="112536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114328" g_stop="114177" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="211" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="267" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="320" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112834" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="540" r_length="220" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="541" polyA_stop="562"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E734990" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114328" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAAT</genome_strand>
        <mrna_strand>GGCTAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTANN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E203027" ref_strand="+" ref_description="SGN-E203027 [cLEB-1-P2]">
      <seq>gcacgagcagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagattaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114627" stop="112534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112834" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="539" r_length="220" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E203027" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAAT</genome_strand>
        <mrna_strand>GCACGAGCAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGATTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E292868" ref_strand="+" ref_description="SGN-E292868 [cLET-11-B13]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactggggataatattacatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114627" stop="112534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112834" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="539" r_length="220" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E292868" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAAT</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGGGGATAATATTACATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E339026" ref_strand="+" ref_description="SGN-E339026 [cTOF-6-D21]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgnnttgctgttttaggttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114627" stop="112533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112834" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="539" r_length="220" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="558" polyA_stop="577"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E339026" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAAT</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E285321" ref_strand="+" ref_description="SGN-E285321 [cLER-20-E14]">
      <seq>aagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattgtactggggataatattacatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114625" stop="112534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114325" g_stop="114177" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="208" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="264" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="317" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112834" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="537" r_length="220" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E285321" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114325" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAAT</genome_strand>
        <mrna_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTGTACTGGGGATAATATTACATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E295106" ref_strand="+" ref_description="SGN-E295106 [cLET-20-C2]">
      <seq>agtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114619" stop="112535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114319" g_stop="114177" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="311" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112835" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="530" r_length="219" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E295106" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114319" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAA</genome_strand>
        <mrna_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E347441" ref_strand="+" ref_description="SGN-E347441 [cTOF-33-B11]">
      <seq>aagaagagaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114656" stop="112535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114356" g_stop="114177" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="239" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="295" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="348" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112836" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="566" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="567" polyA_stop="576"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E347441" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114356" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>AAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E291928" ref_strand="+" ref_description="SGN-E291928 [cLET-7-I15]">
      <seq>aaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaaangnnaaaanaaaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagccccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114648" stop="112536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114348" g_stop="114177" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113749" i_length="428">
            <donor d_prob="0.999" d_score="0.74"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113748" g_stop="113733" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="183" r_length="16" r_score="0.688"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113732" i_stop="113565" i_length="168">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="242" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="298" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="351" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="113053" g_stop="112836" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="569" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E291928" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114348" e_stop="114177"/>
          <exon e_start="113748" e_stop="113733"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>AAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAA-ANG-NNAA-A-ANA-AAAGCTTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGACAAACCCTATG........................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................CCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E298806" ref_strand="+" ref_description="SGN-E298806 [cLET-44-I16]">
      <seq>aggttataggagaaaatggcatgcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtatatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgagattctactgtggataatattacatctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114645" stop="112535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114345" g_stop="114177" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="228" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="284" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="337" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112836" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="555" r_length="218" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="556" polyA_stop="566"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E298806" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114345" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>AGGTTATAGGAGAAAATGGCATGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTATATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGAGATTCTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E286632" ref_strand="+" ref_description="SGN-E286632 [cLES-12-D11]">
      <seq>aggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattntactgtggataatattacatctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114645" stop="112535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114345" g_stop="114177" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="228" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="284" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="337" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112836" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="555" r_length="218" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E286632" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114345" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>AGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTNTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E348751" ref_strand="+" ref_description="SGN-E348751 [cTOF-29-K23]">
      <seq>taataggagaaaatgggcaagccacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttacctagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattntactgtggataatattacatctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114642" stop="112535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114342" g_stop="114177" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="228" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="284" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="337" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112836" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="555" r_length="218" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="556" polyA_stop="572"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E348751" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114342" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATAGGAGAAAAT-GGCAAG-CACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTA-CTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>TAATAGGAGAAAATGGGCAAGCCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACCTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTNTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E732765" ref_strand="+" ref_description="SGN-E732765 [LB03AC10]">
      <seq>cgcgttaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114625" stop="112535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114331" g_stop="114177" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="214" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="270" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="323" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112836" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="541" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="542" polyA_stop="551"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E732765" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114331" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>CGCGTTAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E733372" ref_strand="+" ref_description="SGN-E733372 [LB04CG10]">
      <seq>cggtaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114628" stop="112535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114329" g_stop="114177" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="212" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="268" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="321" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112836" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="539" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="540" polyA_stop="549"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E733372" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114329" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>CGGTAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E312823" ref_strand="+" ref_description="SGN-E312823 [cTOA-8-I15]">
      <seq>tggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114629" stop="112535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114329" g_stop="114177" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="212" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="268" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="321" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112836" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="539" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="540" polyA_stop="549"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E312823" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114329" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>TGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E732421" ref_strand="+" ref_description="SGN-E732421 [LB02AE06]">
      <seq>ggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114628" stop="112540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114328" g_stop="114177" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="211" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="267" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="320" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112836" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="538" r_length="218" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E732421" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114328" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E732479" ref_strand="+" ref_description="SGN-E732479 [LB02BB07]">
      <seq>ggctagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtatttcatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114628" stop="112535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114328" g_stop="114177" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="211" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="267" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="320" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112836" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="538" r_length="218" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="539" polyA_stop="548"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E732479" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114328" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>GGCTAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTTCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E295868" ref_strand="+" ref_description="SGN-E295868 [cLET-27-G9]">
      <seq>ggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114628" stop="112535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114328" g_stop="114177" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="211" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="267" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="320" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112836" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="538" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="539" polyA_stop="548"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E295868" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114328" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E713329" ref_strand="+" ref_description="SGN-E713329 [FB08BD05]">
      <seq>ggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114628" stop="112535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114328" g_stop="114177" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="211" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="267" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="320" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112836" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="538" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="539" polyA_stop="560"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E713329" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114328" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E732628" ref_strand="+" ref_description="SGN-E732628 [LB02CG10]">
      <seq>ggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114628" stop="112535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114328" g_stop="114177" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="211" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="267" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="320" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112836" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="538" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E732628" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114328" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E300522" ref_strand="+" ref_description="SGN-E300522 [cLET-45-P4]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattggactattaagtttaagctgcattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattctactgtggataatattacatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114627" stop="112536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112836" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="537" r_length="218" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E300522" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGGACTATTAAGTTTAAGCTGCATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTCTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E295841" ref_strand="+" ref_description="SGN-E295841 [cLET-25-L16]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcangcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaagaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114627" stop="112536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112836" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="537" r_length="218" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E295841" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCANGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAAGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E293104" ref_strand="+" ref_description="SGN-E293104 [cLET-12-O20]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaaggtgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114627" stop="112536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112836" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="537" r_length="218" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E293104" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGGTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E345764" ref_strand="+" ref_description="SGN-E345764 [cTOF-18-I3]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114627" stop="112535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112836" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="537" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="538" polyA_stop="549"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E345764" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E298760" ref_strand="+" ref_description="SGN-E298760 [cLET-44-C23]">
      <seq>caagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcaatgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaagcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttacccatatgggcagtgaccttgcattgcattcttgcaagaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtgtaagctgcattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattctactgtggataatattacatctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114626" stop="112535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114326" g_stop="114177" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="209" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="265" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="318" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112836" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="536" r_length="218" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="537" polyA_stop="546"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E298760" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114326" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>CAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAATGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAAGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTACCCATATGGGCAGTGACCTTGCATTGCATTCTTGCAAGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTGTAAGCTGCATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTCTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E346518" ref_strand="+" ref_description="SGN-E346518 [cTOF-28-E17]">
      <seq>caagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114626" stop="112535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114326" g_stop="114177" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="209" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="265" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="318" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112836" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="536" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E346518" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114326" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>CAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E288067" ref_strand="+" ref_description="SGN-E288067 [cLES-7-N16]">
      <seq>aagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactggggataatattacctctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114625" stop="112535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114325" g_stop="114177" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="208" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="264" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="317" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112836" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="535" r_length="218" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E288067" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114325" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGGGGATAATATTACCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E297502" ref_strand="+" ref_description="SGN-E297502 [cLET-28-K4]">
      <seq>aagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattntactgtggataatattacatctaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114625" stop="112535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114325" g_stop="114177" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="208" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="264" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="317" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112836" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="535" r_length="218" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="536" polyA_stop="548"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E297502" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114325" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTNTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E294885" ref_strand="+" ref_description="SGN-E294885 [cLET-17-G9]">
      <seq>aagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114625" stop="112536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114325" g_stop="114177" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="208" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="264" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="317" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112836" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="535" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E294885" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114325" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E294886" ref_strand="+" ref_description="SGN-E294886 [cLET-17-G9]">
      <seq>aagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114625" stop="112536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114325" g_stop="114177" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="208" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="264" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="317" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112836" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="535" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E294886" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114325" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E345146" ref_strand="+" ref_description="SGN-E345146 [cTOF-22-F24]">
      <seq>aagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114625" stop="112535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114325" g_stop="114177" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="208" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="264" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="317" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112836" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="535" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="536" polyA_stop="546"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E345146" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114325" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E291498" ref_strand="+" ref_description="SGN-E291498 [cLET-6-A11]">
      <seq>gcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattntactgtggataatattacatctaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114623" stop="112535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114323" g_stop="114177" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="206" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="262" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="315" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112836" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="533" r_length="218" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="534" polyA_stop="547"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E291498" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114323" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>GCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTNTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E288205" ref_strand="+" ref_description="SGN-E288205 [cLES-7-J4]">
      <seq>cacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114622" stop="112535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114322" g_stop="114177" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="205" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="261" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="314" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112836" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="532" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="533" polyA_stop="543"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E288205" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114322" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>CACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E288175" ref_strand="-" ref_description="SGN-E288175 [cLES-7-L19]">
      <seq>cagttgccatttttttaaaaaaccagtaatgagctcattgagcctagagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagaccttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcgagtgaccttgcttggcattcttgcaggaggntgctctccattgtctacaacaacaaagtgctttggcgcacatagatgttatccttgatattgtactcattaagtttagagttgtattccatgcttatcttttcaagaatatttattggcagtcttcatataatatgtaattgctgtgattttactgtggataatattacatctaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114625" stop="112535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114319" g_stop="114177" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="167" r_length="143" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="226" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="282" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="335" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112836" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="566" r_length="231" r_score="0.876"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="567" polyA_stop="585"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E288175" ref_strand="-">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288175" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="114319" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCG-GTGACCTTGCTTGGCATTCTTGCAGGAGG-TGCTCTCC-TTGTCTACAAC-AC-AAGTGCTTTGGCGCA-ATAGATGTTATCCTTG-TATTGTACT-ATTAAGTTTA-AGTTGTATTCCATG-TTATCTTTTCAA-AATATTTCTTGGCA-TCTTCAT-TAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>AGTAATGAGCTCATTGAGCCTAGAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGACCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGAGTGACCTTGCTTGGCATTCTTGCAGGAGGNTGCTCTCCATTGTCTACAACAACAAAGTGCTTTGGCGCACATAGATGTTATCCTTGATATTGTACTCATTAAGTTTAGAGTTGTATTCCATGCTTATCTTTTCAAGAATATTTATTGGCAGTCTTCATATAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E287275" ref_strand="-" ref_description="SGN-E287275 [cLES-15-O9]">
      <seq>agtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcccttactagatcttcttctcccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggtttacccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattccatctaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114619" stop="112535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114319" g_stop="114177" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="311" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112836" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="529" r_length="218" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="530" polyA_stop="548"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E287275" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287275" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="114319" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCCCTTACTAGATCTTCTTCTCCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGTTTACCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTCCATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E295708" ref_strand="+" ref_description="SGN-E295708 [cLET-25-L4]">
      <seq>agtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114619" stop="112535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114319" g_stop="114177" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="311" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112836" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="529" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="530" polyA_stop="541"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E295708" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114319" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E294470" ref_strand="+" ref_description="SGN-E294470 [cLET-14-H14]">
      <seq>taatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattctactgtggataatattacatctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114617" stop="112535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114317" g_stop="114177" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="200" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="256" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="309" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112836" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="527" r_length="218" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="528" polyA_stop="539"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E294470" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114317" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>TAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTCTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E294471" ref_strand="+" ref_description="SGN-E294471 [cLET-14-H14]">
      <seq>taatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattctactgtggataatattacatctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114617" stop="112535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114317" g_stop="114177" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="200" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="256" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="309" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112836" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="527" r_length="218" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="528" polyA_stop="539"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E294471" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114317" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>TAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTCTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E734579" ref_strand="+" ref_description="SGN-E734579 [LB13AB09]">
      <seq>aatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114616" stop="112535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114316" g_stop="114177" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="199" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="255" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="308" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112836" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="526" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="527" polyA_stop="536"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E734579" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114316" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>AATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E734232" ref_strand="+" ref_description="SGN-E734232 [LB12AE07]">
      <seq>attgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttgtaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114607" stop="112535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114307" g_stop="114177" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="190" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="246" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="299" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112836" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="517" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="518" polyA_stop="538"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E734232" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114307" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>ATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGTAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E732208" ref_strand="+" ref_description="SGN-E732208 [LB01CC05]">
      <seq>ctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114600" stop="112535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114300" g_stop="114177" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="183" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="239" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="292" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112836" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="510" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="511" polyA_stop="537"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E732208" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114300" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>CTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E283743" ref_strand="-" ref_description="SGN-E283743 [cLES-1-I7]">
      <seq>agaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatgcccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114578" stop="112535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114278" g_stop="114177" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="161" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="217" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="270" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112836" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="488" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="489" polyA_stop="502"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E283743" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283743" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="114278" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>AGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGCCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E285157" ref_strand="+" ref_description="SGN-E285157 [cLER-20-I24]">
      <seq>atatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114573" stop="112535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114273" g_stop="114177" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="156" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="212" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="265" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112836" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="483" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E285157" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114273" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>ATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E373576" ref_strand="-" ref_description="SGN-E373576 [TUS-33-A20]">
      <seq>ggcttccatcacttactagatctttttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgaaagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtttatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtttacaacacaagtgctttggcgcaataaatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatttaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114560" stop="112535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114260" g_stop="114177" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="143" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="199" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="252" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112836" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="470" r_length="218" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="471" polyA_stop="497"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E373576" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373576" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="114260" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>GGCTTCCATCACTTACTAGATCTTTTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAAAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTTTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTTTACAACACAAGTGCTTTGGCGCAATAAATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E373577" ref_strand="+" ref_description="SGN-E373577 [TUS-33-A20]">
      <seq>gcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaacaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114559" stop="112535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114259" g_stop="114177" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="142" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="198" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="251" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112836" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="469" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="470" polyA_stop="497"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E373577" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114259" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>GCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E215458" ref_strand="-" ref_description="SGN-E215458 [cLEL-20-A17]">
      <seq>atcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114553" stop="112535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114253" g_stop="114177" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="136" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="192" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="245" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112836" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="463" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="464" polyA_stop="479"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E215458" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215458" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="114253" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>ATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E716250" ref_strand="+" ref_description="SGN-E716250 [FB16CB04]">
      <seq>atcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114553" stop="112535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114253" g_stop="114177" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="136" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="192" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="245" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112836" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="463" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="464" polyA_stop="476"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E716250" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114253" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>ATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E215170" ref_strand="-" ref_description="SGN-E215170 [cLEL-20-A17]">
      <seq>agttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114523" stop="112535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114223" g_stop="114177" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="106" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="162" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="215" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112836" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="433" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="434" polyA_stop="449"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E215170" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215170" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="114223" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>AGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E299486" ref_strand="+" ref_description="SGN-E299486 [cLET-43-J14]">
      <seq>taagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagctgcattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114505" stop="112535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114205" g_stop="114177" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="88" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="144" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="197" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112836" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="415" r_length="218" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="416" polyA_stop="431"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E299486" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114205" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>TAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGCTGCATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E226418" ref_strand="-" ref_description="SGN-E226418 [cLEL-26-L2]">
      <seq>agcatggccttgaaaaatggggtttaatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttgaaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaataaatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="113853" stop="112535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113553" g_stop="113506" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.896"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="105" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="158" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113053" g_stop="112836" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="376" r_length="218" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="377" polyA_stop="400"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E226418" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226418" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113553" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATGGCCTTGAGAGATGGGG-TTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>AGCATGGCCTTGAAAAATGGGGTTTAATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGAAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAAATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E226574" ref_strand="-" ref_description="SGN-E226574 [cLEL-26-L2]">
      <seq>aaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttaatgaaaacagtcccatttacaacacggatgaatggtctccaagtggtgatgtctatgttgaaggtaccactggcttaaccatatggacggtgaccttgcttggcattcttgcagaaggtgctcaccttgtcaacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttctaaatatttcttggcctcttcattaatatgtaattgctgcaattttactgtggataatattacatctaaagaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="113651" stop="112533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113515" g_stop="113506" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="66" r_length="56" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="119" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113053" g_stop="112836" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="337" r_length="218" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="338" polyA_stop="360"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E226574" ref_strand="-">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226574" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113515" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>AAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTAATGAAAACAG............................................................................TCCCATTTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGAAG...............................................................................................................GTACCACTGGCTTAACCATATGGACGGTGACCTTGCTTGGCATTCTTGCAGAAGGTGCTCACCTTGTCAACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCTAAATATTTCTTGGCCTCTTCATTAATATGTAATTGCTGCAATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E222892" ref_strand="-" ref_description="SGN-E222892 [cLEL-38-I4]">
      <seq>cccaagggaaagggtgtgtgccaatatgttgacaaatatggagctaatgttgatgcatacagtcccatctgcgacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactgcattacccatatggccggtcaccctgcttggcattcttgcagaaggtgctctccatgtctacaacgcaagtgctttggcgcaataaatgttatccttgtattgtacaattaagtttaagctgtatgccatgttatcttttcgagatatttcttggcatcttcattaatatgtaataactgtgatttatctgtggatggttttacaactaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="113651" stop="112535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113511" g_stop="113506" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="62" r_length="56" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="115" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113053" g_stop="112836" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="333" r_length="218" r_score="0.894"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="334" polyA_stop="349"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E222892" ref_strand="-">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222892" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113511" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>CCCAAG............................................................................................................................................................GGAAAGGGTGTGTGCCAATATGTTGACAAATATGGAGCTAATGTTGATGCATACAG............................................................................TCCCATCTGCGACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGCATTACCCATATGGCCGGTCACCCTGCTTGGCATTCTTGCAGAAGGTGCTCTCCATGTCTACAACGCAAGTGCTTTGGCGCAATAAATGTTATCCTTGTATTGTACAATTAAGTTTAAGCTGTATGCCATGTTATCTTTTCGAGATATTTCTTGGCATCTTCATTAATATGTAATAACTGTGATTTATCTGTGGATGGTTTTACAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E236712" ref_strand="-" ref_description="SGN-E236712 [cLEL-7-H8]">
      <seq>ccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="113651" stop="112535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113510" g_stop="113506" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="61" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="114" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113053" g_stop="112836" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="332" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="333" polyA_stop="348"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E236712" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236712" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113510" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>CCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E232387" ref_strand="-" ref_description="SGN-E232387 [cLEL-5-K1]">
      <seq>gggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattncttctaaaaaaacaaaaaaaaaaaacaaaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="113644" stop="112535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113344" g_stop="113294" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="104" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113053" g_stop="112836" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="322" r_length="218" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="323" polyA_stop="341"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E232387" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232387" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113344" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>GGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTNCTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E232463" ref_strand="-" ref_description="SGN-E232463 [cLEL-5-K1]">
      <seq>ggtctccaagtggtaatgtctatgttggaggtacccctggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggaatcttcattaatatgtaaaagctgaacttttcctgtggataattttccatctaaaaaaaaaaaaaaaaaaaacaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="113494" stop="112565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113194" g_stop="113165" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113053" g_stop="112836" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="248" r_length="218" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="249" polyA_stop="273"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E232463" ref_strand="-">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>248</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232463" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113194" e_stop="113165"/>
          <exon e_start="113053" e_stop="112836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>GGTCTCCAAGTGGTAATGTCTATGTTGGAG...............................................................................................................GTACCCCTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGAATCTTCATTAATATGTAAAAGCTGAACTTTTCCTGTGGATAATTTTCCATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E237171" ref_strand="-" ref_description="SGN-E237171 [cLEL-7-J24]">
      <seq>gtgaccttgcttggcattcttgcagcaggtgctctccttgtctacaacacgagtgctttggcgcaatagatgttatccatgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatagttcatggcatgttcattaatatgtaattgctgtgatttaactgtggattatcttgcatctaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="113327" stop="112535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113027" g_stop="112836" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="193" polyA_stop="206"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E237171" ref_strand="-">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>192</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237171" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113027" e_stop="112836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>GTGACCTTGCTTGGCATTCTTGCAGCAGGTGCTCTCCTTGTCTACAACACGAGTGCTTTGGCGCAATAGATGTTATCCATGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATAGTTCATGGCATGTTCATTAATATGTAATTGCTGTGATTTAACTGTGGATTATCTTGCATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E289638" ref_strand="+" ref_description="SGN-E289638 [cLET-4-L23]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccacttgcttagccatatggccggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114627" stop="112537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112837" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="536" r_length="217" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E289638" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCT</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTTGCTTAGCCATATGGCCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E725966" ref_strand="+" ref_description="SGN-E725966 [LA08DE08]">
      <seq>cagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttangttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114620" stop="112537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114320" g_stop="114177" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="203" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="259" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="312" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112837" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="529" r_length="217" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E725966" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114320" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCT</genome_strand>
        <mrna_strand>CAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTANGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E298523" ref_strand="+" ref_description="SGN-E298523 [cLET-41-O8]">
      <seq>taaagccatctttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttacccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114599" stop="112540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114299" g_stop="114177" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="182" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="238" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="291" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112837" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="508" r_length="217" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E298523" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114299" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCT</genome_strand>
        <mrna_strand>TAAAGCCATCTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTACCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E342555" ref_strand="+" ref_description="SGN-E342555 [cTOF-7-E3]">
      <seq>aagaagagaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattntactgtggataatattacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114656" stop="112538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114356" g_stop="114177" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="239" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="295" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="348" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112838" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="564" r_length="216" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E342555" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114356" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATC</genome_strand>
        <mrna_strand>AAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTNTACTGTGGATAATATTACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E548401" ref_strand="-" ref_description="SGN-E548401 [TUS-60-N21]">
      <seq>gagaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114651" stop="112540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114351" g_stop="114177" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="234" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="290" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="343" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112838" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="559" r_length="216" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E548401" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548401" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="114351" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATC</genome_strand>
        <mrna_strand>GAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAAAAAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E540539" ref_strand="+" ref_description="SGN-E540539 [TUS-60-N21]">
      <seq>gagaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114651" stop="112540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114351" g_stop="114177" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="234" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="290" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="343" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112838" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="559" r_length="216" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E540539" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114351" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATC</genome_strand>
        <mrna_strand>GAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E266044" ref_strand="+" ref_description="SGN-E266044 [cLEI-6-C13]">
      <seq>aaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactggggataatattacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114648" stop="112538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114348" g_stop="114177" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="231" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="287" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="340" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112838" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="556" r_length="216" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E266044" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114348" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATC</genome_strand>
        <mrna_strand>AAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGGGGATAATATTACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E740887" ref_strand="+" ref_description="SGN-E740887 [LC23BC06]">
      <seq>cgtgtaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114627" stop="112540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114330" g_stop="114177" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="213" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="269" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="322" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112838" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="538" r_length="216" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E740887" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114330" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATC</genome_strand>
        <mrna_strand>CGTGTAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E736823" ref_strand="+" ref_description="SGN-E736823 [LC07BG05]">
      <seq>ggtaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114628" stop="112540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114328" g_stop="114177" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="211" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="267" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="320" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112838" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="536" r_length="216" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E736823" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114328" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATC</genome_strand>
        <mrna_strand>GGTAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E740604" ref_strand="+" ref_description="SGN-E740604 [LC22AF08]">
      <seq>ggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114628" stop="112540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114328" g_stop="114177" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="211" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="267" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="320" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112838" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="536" r_length="216" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E740604" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114328" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATC</genome_strand>
        <mrna_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E342531" ref_strand="+" ref_description="SGN-E342531 [cTOF-8-J12]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggngaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactatttagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaatggctgtgattttactgtggataatattacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114627" stop="112538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112838" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="535" r_length="216" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E342531" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATC</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGNGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTTAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATGGCTGTGATTTTACTGTGGATAATATTACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E290789" ref_strand="+" ref_description="SGN-E290789 [cLET-10-I13]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114627" stop="112538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112838" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="535" r_length="216" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E290789" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATC</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E308856" ref_strand="+" ref_description="SGN-E308856 [cLEY-23-K13]">
      <seq>cagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114620" stop="112540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114320" g_stop="114177" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="203" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="259" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="312" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112838" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="528" r_length="216" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E308856" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114320" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATC</genome_strand>
        <mrna_strand>CAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E283766" ref_strand="+" ref_description="SGN-E283766 [cLES-1-M3]">
      <seq>ttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114521" stop="112540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114221" g_stop="114177" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="104" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="160" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="213" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112838" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="429" r_length="216" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E283766" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114221" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATC</genome_strand>
        <mrna_strand>TTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E345560" ref_strand="+" ref_description="SGN-E345560 [cTOF-18-F4]">
      <seq>gaagagaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114654" stop="112540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114354" g_stop="114177" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="237" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="293" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="346" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112839" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="561" r_length="215" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E345560" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114354" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACAT</genome_strand>
        <mrna_strand>GAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E299356" ref_strand="+" ref_description="SGN-E299356 [cLET-43-C15]">
      <seq>aagagaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtgcaaaaaaaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114653" stop="112539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114353" g_stop="114177" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="236" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="292" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="345" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112839" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="560" r_length="215" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E299356" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114353" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACAT</genome_strand>
        <mrna_strand>AAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGCAAAAAAAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E309301" ref_strand="+" ref_description="SGN-E309301 [cLEY-22-B6]">
      <seq>aaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114647" stop="112540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114347" g_stop="114177" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="230" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="286" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="339" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112839" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="554" r_length="215" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E309301" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114347" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACAT</genome_strand>
        <mrna_strand>AAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E732113" ref_strand="+" ref_description="SGN-E732113 [LB01BC05]">
      <seq>ggctagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114628" stop="112540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114328" g_stop="114177" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="211" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="267" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="320" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112839" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="535" r_length="215" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E732113" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114328" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACAT</genome_strand>
        <mrna_strand>GGCTAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E291610" ref_strand="+" ref_description="SGN-E291610 [cLET-6-B16]">
      <seq>cacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgaccaatatggagctaatgctgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaagaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgggattttacttgggataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114622" stop="112540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114322" g_stop="114177" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="205" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="261" r_length="56" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="314" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112839" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="529" r_length="215" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E291610" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114322" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACAT</genome_strand>
        <mrna_strand>CACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACCAATATGGAGCTAATGCTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAAGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGGGATTTTACTTGGGATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E278786" ref_strand="+" ref_description="SGN-E278786 [cLER-2-B3]">
      <seq>aaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcatgcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="113868" stop="112540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="69" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="125" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="178" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113053" g_stop="112839" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="393" r_length="215" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E278786" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACAT</genome_strand>
        <mrna_strand>GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCATGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E283767" ref_strand="-" ref_description="SGN-E283767 [cLES-1-M3]">
      <seq>gtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114519" stop="112540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114219" g_stop="114177" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="102" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="158" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="211" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112840" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="425" r_length="214" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E283767" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283767" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="114219" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACA</genome_strand>
        <mrna_strand>GTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E343489" ref_strand="+" ref_description="SGN-E343489 [cTOF-19-K3]">
      <seq>agaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatncttcattaatatgtaattgctgtgattntactgtggataatattacantctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114635" stop="112535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114335" g_stop="114177" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="218" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="274" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="327" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112841" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="541" r_length="214" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="547" polyA_stop="559"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E343489" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114335" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCAT-CTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTAC</genome_strand>
        <mrna_strand>AGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATNCTTCATTAATATGTAATTGCTGTGATTNTACTGTGGATAATATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E281789" ref_strand="-" ref_description="SGN-E281789 [cLER-14-J11]">
      <seq>agtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114619" stop="112542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114319" g_stop="114177" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="311" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112842" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="523" r_length="212" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E281789" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281789" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="114319" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTA</genome_strand>
        <mrna_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E278112" ref_strand="-" ref_description="SGN-E278112 [cLER-4-D17]">
      <seq>gctaagtggtgttaagaagcttaagactgccaaaccctatggaattaatgaaagcatggccttaaaaaatggggttgatgcctcaggcaggaagcccaaggaaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtcatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114516" stop="112542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114216" g_stop="114177" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="0.93"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="100" r_length="59" r_score="0.932"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="156" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="209" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112842" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="421" r_length="212" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E278112" ref_strand="-">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278112" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="114216" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCT-AGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTA</genome_strand>
        <mrna_strand>GCTAAGTGGTGTTAAGAAGCTTAAGACTGCCAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGAAAGCATGGCCTTAAAAAATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GAAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTCATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E290833" ref_strand="+" ref_description="SGN-E290833 [cLET-10-I20]">
      <seq>tctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114583" stop="112545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114283" g_stop="114177" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="166" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="222" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="275" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112843" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="486" r_length="211" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E290833" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114283" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATT</genome_strand>
        <mrna_strand>TCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E290282" ref_strand="+" ref_description="SGN-E290282 [cLET-5-F10]">
      <seq>caagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114626" stop="112544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114326" g_stop="114177" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="209" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="265" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="318" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112844" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="528" r_length="210" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E290282" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114326" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATAT</genome_strand>
        <mrna_strand>CAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E732584" ref_strand="+" ref_description="SGN-E732584 [LB02CD01]">
      <seq>cgataaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataaaaaaaaaaacccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114649" stop="112540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114352" g_stop="114177" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="234" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="290" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="343" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112848" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="549" r_length="206" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="550" polyA_stop="560"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E732584" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114352" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATA</genome_strand>
        <mrna_strand>CGAT-AAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E292082" ref_strand="+" ref_description="SGN-E292082 [cLET-1-E17]">
      <seq>tggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggntnaaanaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114629" stop="112540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114329" g_stop="114177" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="212" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="268" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="321" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112848" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="527" r_length="206" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="528" polyA_stop="551"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E292082" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114329" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATA</genome_strand>
        <mrna_strand>TGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGNTN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E733882" ref_strand="+" ref_description="SGN-E733882 [LB11AG11]">
      <seq>caatcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114626" stop="112540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114326" g_stop="114177" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="209" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="265" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="318" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112848" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="524" r_length="206" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="525" polyA_stop="542"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E733882" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114326" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATA</genome_strand>
        <mrna_strand>CAATCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E733973" ref_strand="+" ref_description="SGN-E733973 [LB11BG08]">
      <seq>caagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114626" stop="112540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114326" g_stop="114177" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="209" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="265" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="318" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112848" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="524" r_length="206" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="525" polyA_stop="542"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E733973" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114326" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATA</genome_strand>
        <mrna_strand>CAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E292286" ref_strand="-" ref_description="SGN-E292286 [cLET-1-E17]">
      <seq>agaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttggcaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtacccctggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114578" stop="112540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114278" g_stop="114177" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="161" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="217" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="270" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112848" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="476" r_length="206" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="477" polyA_stop="499"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E292286" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292286" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="114278" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATA</genome_strand>
        <mrna_strand>AGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGGCAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCCCTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E222894" ref_strand="-" ref_description="SGN-E222894 [cLEL-38-I8]">
      <seq>cccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatcactatcacgaatgaatggtcaccaagtggtgatgtcaatgttgaaggtaccactgccttagccatatggtcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctccaacacaagtgctttggcccaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattcctgtgattttactgtgcatacttttccataaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="113651" stop="112535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113511" g_stop="113506" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="62" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="115" r_length="53" r_score="0.849"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="0.84"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113053" g_stop="112848" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="321" r_length="206" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="329" polyA_stop="348"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E222894" ref_strand="-">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222894" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113511" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATA</genome_strand>
        <mrna_strand>CCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCACTATCACGAATGAATGGTCACCAAGTGGTGATGTCAATGTTGAAG...............................................................................................................GTACCACTGCCTTAGCCATATGGTCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTCCAACACAAGTGCTTTGGCCCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTCCTGTGATTTTACTGTGCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E232651" ref_strand="-" ref_description="SGN-E232651 [cLEL-5-E23]">
      <seq>aagggtgtgtcccaatatgttacaaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaaagtggtgatgtctatgttgaaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcagaaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataaaaaaaacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="113646" stop="112540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113346" g_stop="113294" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="107" r_length="54" r_score="0.943"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113053" g_stop="112848" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="313" r_length="206" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="314" polyA_stop="332"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E232651" ref_strand="-">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>312</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232651" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113346" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCC-AAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATA</genome_strand>
        <mrna_strand>AAGGGTGTGTCCCAATATGTTACAAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAAGTGGTGATGTCTATGTTGAAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGAAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E299193" ref_strand="+" ref_description="SGN-E299193 [cLET-42-P6]">
      <seq>taatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagctgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattctactgtggnaaaaaaaaaattccttggcatcttcattaatatttaattgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114617" stop="112525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114317" g_stop="114177" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="200" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="256" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="309" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112851" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="512" r_length="203" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="514" polyA_stop="524"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E299193" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114317" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGG</genome_strand>
        <mrna_strand>TAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGCTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTCTACTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E290658" ref_strand="+" ref_description="SGN-E290658 [cLET-10-E21]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagcggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaagaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattggactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactaaatattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114627" stop="112555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112855" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="518" r_length="199" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E290658" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACT</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGCGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAAGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGGACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E320712" ref_strand="+" ref_description="SGN-E320712 [cTOB-27-N13]">
      <seq>caagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114626" stop="112555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114326" g_stop="114177" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="209" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="265" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="318" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112855" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="517" r_length="199" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E320712" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114326" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACT</genome_strand>
        <mrna_strand>CAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E293688" ref_strand="+" ref_description="SGN-E293688 [cLET-21-B6]">
      <seq>cacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114622" stop="112555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114322" g_stop="114177" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="205" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="261" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="314" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112855" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="513" r_length="199" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E293688" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114322" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACT</genome_strand>
        <mrna_strand>CACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E285477" ref_strand="-" ref_description="SGN-E285477 [cLES-10-H23]">
      <seq>tctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcagtaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttgcaggtaccactggcttagccatatgggcggtgaccttgcttggcattcccgcagcaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114583" stop="112555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114283" g_stop="114177" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="166" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="222" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="275" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112855" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="474" r_length="199" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E285477" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285477" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="114283" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACT</genome_strand>
        <mrna_strand>TCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGTAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGCAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCCCGCAGCAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E294069" ref_strand="-" ref_description="SGN-E294069 [cLET-13-M1]">
      <seq>ggaaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatgtacaacaagtatgaatggtctccaagtggtgatgtctatgttggaggtaccgctggcttagccatatggccggtgactctgcttggcattcttgcagaaggtgctctccttgtgtacaacacaagtgctttggcgcaatagatgttatctttgtattgtactattaagtttaagttgtataccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaaatgctgtgatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="113650" stop="112558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113350" g_stop="113294" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="110" r_length="53" r_score="0.943"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113053" g_stop="112858" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="306" r_length="196" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E294069" ref_strand="-">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294069" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113350" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTT</genome_strand>
        <mrna_strand>GGAAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATGTACAACAAGTATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCGCTGGCTTAGCCATATGGCCGGTGACTCTGCTTGGCATTCTTGCAGAAGGTGCTCTCCTTGTGTACAACACAAGTGCTTTGGCGCAATAGATGTTATCTTTGTATTGTACTATTAAGTTTAAGTTGTATACCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAAATGCTGTGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E283133" ref_strand="+" ref_description="SGN-E283133 [cLER-17-O9]">
      <seq>gccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgnnnaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114595" stop="112565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114295" g_stop="114177" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="178" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="234" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="287" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112866" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="475" r_length="188" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E283133" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114295" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCT</genome_strand>
        <mrna_strand>GCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E297264" ref_strand="+" ref_description="SGN-E297264 [cLET-29-C24]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114627" stop="112576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112868" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="505" r_length="186" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E297264" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTG</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E299198" ref_strand="+" ref_description="SGN-E299198 [cLET-43-A1]">
      <seq>aaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagctgtattccatgttatcttttcaaaatatttcttggcatcttcattatnaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114648" stop="112579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114348" g_stop="114177" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="231" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="287" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="340" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112869" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="525" r_length="185" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E299198" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114348" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATT</genome_strand>
        <mrna_strand>AAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGCTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTATNAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E292547" ref_strand="+" ref_description="SGN-E292547 [cLET-16-E22]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114627" stop="112576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112869" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="504" r_length="185" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E292547" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATT</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E297306" ref_strand="+" ref_description="SGN-E297306 [cLET-29-B14]">
      <seq>tgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttgcatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114605" stop="112569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114305" g_stop="114177" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="188" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="244" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="297" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112869" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="482" r_length="185" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E297306" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114305" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATT</genome_strand>
        <mrna_strand>TGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTGCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E293707" ref_strand="+" ref_description="SGN-E293707 [cLET-21-H8]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114627" stop="112571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112871" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="502" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E293707" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAA</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E299229" ref_strand="+" ref_description="SGN-E299229 [cLET-43-M5]">
      <seq>agtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114619" stop="112576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114319" g_stop="114177" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="311" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112871" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="494" r_length="183" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E299229" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114319" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAA</genome_strand>
        <mrna_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E733583" ref_strand="+" ref_description="SGN-E733583 [LB10BF05]">
      <seq>gaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114649" stop="112571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114349" g_stop="114177" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="232" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="288" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="341" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112872" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="523" r_length="182" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="524" polyA_stop="537"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E733583" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114349" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTA</genome_strand>
        <mrna_strand>GAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E735048" ref_strand="+" ref_description="SGN-E735048 [LB14BB09]">
      <seq>ggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114628" stop="112576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114328" g_stop="114177" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="211" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="267" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="320" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112872" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="502" r_length="182" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E735048" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114328" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTA</genome_strand>
        <mrna_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E391393" ref_strand="+" ref_description="SGN-E391393 [TUS-48-H9]">
      <seq>caagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaaacttaacactgacaaaccctatggaattaatggaagcatggccttgaaagatggggatgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagaggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctcctagtctacgacacaagtgctttggagcaatagatgttatccttggattgtactattaagattaagttgtattccatgttatctttgaaaaatattacttggcatcttcattaatatgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114626" stop="112571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114326" g_stop="114177" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="209" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="265" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="318" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112872" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="500" r_length="182" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E391393" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114326" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTA</genome_strand>
        <mrna_strand>CAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAACTTAACACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAAAGATGGGGATGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGAGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTAGTCTACGACACAAGTGCTTTGGAGCAATAGATGTTATCCTTGGATTGTACTATTAAGATTAAGTTGTATTCCATGTTATCTTTGAAAAATATTACTTGGCATCTTCATTAATATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E733412" ref_strand="+" ref_description="SGN-E733412 [LB04DF04]">
      <seq>caatcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114626" stop="112571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114326" g_stop="114177" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="209" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="265" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="318" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112872" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="500" r_length="182" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="501" polyA_stop="510"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E733412" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114326" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTA</genome_strand>
        <mrna_strand>CAATCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E390935" ref_strand="-" ref_description="SGN-E390935 [TUS-46-H10]">
      <seq>caagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114626" stop="112571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114326" g_stop="114177" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="209" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="265" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="318" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112872" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="500" r_length="182" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E390935" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390935" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="114326" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTA</genome_strand>
        <mrna_strand>CAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E292602" ref_strand="+" ref_description="SGN-E292602 [cLET-16-N10]">
      <seq>aagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114625" stop="112576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114325" g_stop="114177" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="208" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="264" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="317" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112872" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="499" r_length="182" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E292602" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114325" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTA</genome_strand>
        <mrna_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E300412" ref_strand="+" ref_description="SGN-E300412 [cLET-45-A12]">
      <seq>aagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattggactattaagtgtaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114625" stop="112571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114325" g_stop="114177" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="208" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="264" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="317" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112872" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="499" r_length="182" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E300412" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114325" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTA</genome_strand>
        <mrna_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGGACTATTAAGTGTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E291981" ref_strand="+" ref_description="SGN-E291981 [cLET-7-M24]">
      <seq>agctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgtcgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccgtgcttggcattcttgcaggaggcgctctccttgtctacaacacaagtgctgtggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaaaaaaaaaaaaaacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114612" stop="112571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114312" g_stop="114177" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="195" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="251" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="304" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112872" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="486" r_length="182" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="487" polyA_stop="503"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E291981" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114312" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTA</genome_strand>
        <mrna_strand>AGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTCGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCGTGCTTGGCATTCTTGCAGGAGGCGCTCTCCTTGTCTACAACACAAGTGCTGTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E396183" ref_strand="+" ref_description="SGN-E396183 [TUS-41-G9]">
      <seq>agtgaaaaggtttccatcacttacaaaatcttcttcttccttcaaaattgtggctagtggtgttaaaaaccttaagactgacaaaccctatggaattaatggaacgcatggccttgaaagatggggttgatgcctcaggcacgaagcccaagggaaagggtgtgtaccaatatgtagacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggagaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcctggcatcttcattaatatgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114568" stop="112571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114268" g_stop="114177" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="152" r_length="60" r_score="0.932"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="208" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="261" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112872" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="443" r_length="182" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E396183" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114268" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAA-GCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTA</genome_strand>
        <mrna_strand>AGTGAAAAGGTTTCCATCACTTACAAAATCTTCTTCTTCCTTCAAAATTGTGGCTAGTGGTGTTAAAAACCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAACGCATGGCCTTGAAAGATGGGGTTGATGCCTCAGGCACGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTAGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGAGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCCTGGCATCTTCATTAATATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E294164" ref_strand="+" ref_description="SGN-E294164 [cLET-13-D22]">
      <seq>agaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaaagtgtattccatgttatcttttcaaaatatttcttggcatctttattaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114650" stop="112574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114350" g_stop="114177" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="233" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="289" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="342" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112874" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="522" r_length="180" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E294164" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114350" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATG</genome_strand>
        <mrna_strand>AGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAAGTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTTATTAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E282058" ref_strand="+" ref_description="SGN-E282058 [cLES-2-F12]">
      <seq>gagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114613" stop="112574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114313" g_stop="114177" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="196" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="252" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="305" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112874" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="485" r_length="180" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E282058" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114313" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATG</genome_strand>
        <mrna_strand>GAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E290234" ref_strand="+" ref_description="SGN-E290234 [cLET-5-M8]">
      <seq>agagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="113841" stop="112574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113541" g_stop="113506" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="92" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="145" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113053" g_stop="112874" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="325" r_length="180" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E290234" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113541" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATG</genome_strand>
        <mrna_strand>AGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E286405" ref_strand="+" ref_description="SGN-E286405 [cLES-11-B18]">
      <seq>agaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114635" stop="112575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114335" g_stop="114177" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="218" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="274" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="327" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112875" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="506" r_length="179" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E286405" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114335" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATAT</genome_strand>
        <mrna_strand>AGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E289637" ref_strand="+" ref_description="SGN-E289637 [cLET-4-L21]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114627" stop="112575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112875" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="498" r_length="179" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E289637" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATAT</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E289971" ref_strand="+" ref_description="SGN-E289971 [cLET-9-F10]">
      <seq>cacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114622" stop="112575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114322" g_stop="114177" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="205" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="261" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="314" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112875" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="493" r_length="179" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E289971" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114322" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATAT</genome_strand>
        <mrna_strand>CACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E289443" ref_strand="+" ref_description="SGN-E289443 [cLET-3-P13]">
      <seq>agtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaagcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114619" stop="112575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114319" g_stop="114177" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="311" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112875" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="490" r_length="179" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E289443" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114319" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATAT</genome_strand>
        <mrna_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAAGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E281176" ref_strand="+" ref_description="SGN-E281176 [cLER-7-J10]">
      <seq>agtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114619" stop="112575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114319" g_stop="114177" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="311" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112875" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="490" r_length="179" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E281176" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114319" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATAT</genome_strand>
        <mrna_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E279888" ref_strand="+" ref_description="SGN-E279888 [cLER-8-I21]">
      <seq>ctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114610" stop="112575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114310" g_stop="114177" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="193" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="249" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="302" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112875" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="481" r_length="179" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E279888" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114310" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATAT</genome_strand>
        <mrna_strand>CTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E299064" ref_strand="+" ref_description="SGN-E299064 [cLET-42-G9]">
      <seq>ctgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgcattccatgttatcttttcaaaatatttcttggcatcttcattaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114491" stop="112575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114191" g_stop="114177" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="74" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="130" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="183" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112875" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="362" r_length="179" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E299064" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114191" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATAT</genome_strand>
        <mrna_strand>CTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGCATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E733303" ref_strand="+" ref_description="SGN-E733303 [LB04CA11]">
      <seq>ccgttcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcnttanaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114611" stop="112576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114313" g_stop="114177" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="196" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="252" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="305" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112879" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="480" r_length="175" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="482" polyA_stop="503"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E733303" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114313" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTA</genome_strand>
        <mrna_strand>CCGTTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCNTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E291878" ref_strand="+" ref_description="SGN-E291878 [cLET-7-P17]">
      <seq>tggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcatgcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctaccacacggattaatggtctccaagtggtgatgtctatgttggaggtaccactggcttaaccatatgggcggtgaccttgcttggccttcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgcattggactattaagtttaagctgtatttcatgttatctttttaaaatatttcttggcatcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114629" stop="112583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114329" g_stop="114177" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="212" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="268" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="321" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112883" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="492" r_length="171" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E291878" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114329" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTC</genome_strand>
        <mrna_strand>TGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCATGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACCACACGGATTAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAACCATATGGGCGGTGACCTTGCTTGGCCTTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGCATTGGACTATTAAGTTTAAGCTGTATTTCATGTTATCTTTTTAAAATATTTCTTGGCATCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E291462" ref_strand="+" ref_description="SGN-E291462 [cLET-2-D9]">
      <seq>aaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114648" stop="112584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114348" g_stop="114177" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="231" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="287" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="340" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112884" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="510" r_length="170" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E291462" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114348" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTT</genome_strand>
        <mrna_strand>AAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E291496" ref_strand="+" ref_description="SGN-E291496 [cLET-2-N18]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagctgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgctggaggtaccactggcttagccatatgggcggcgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114627" stop="112584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112884" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="489" r_length="170" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E291496" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTT</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGCTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGCTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGCGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E284536" ref_strand="-" ref_description="SGN-E284536 [cLES-3-B21]">
      <seq>aaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgttccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114575" stop="112589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114275" g_stop="114177" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="158" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="214" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="267" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112889" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="432" r_length="165" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E284536" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284536" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="114275" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGC</genome_strand>
        <mrna_strand>AAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTTCCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E278078" ref_strand="+" ref_description="SGN-E278078 [cLER-4-A12]">
      <seq>agaaaatggcaagcacagctatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagcggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgctggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaagaagtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114635" stop="112591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114335" g_stop="114177" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="218" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="274" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="327" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112891" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="490" r_length="163" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E278078" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114335" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTG</genome_strand>
        <mrna_strand>AGAAAATGGCAAGCACAGCTATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGCGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGCTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAAGAAGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E296925" ref_strand="+" ref_description="SGN-E296925 [cLET-26-M14]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaagcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatctttttcaaatatttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114627" stop="112592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112892" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="481" r_length="162" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E296925" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTT</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAAGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTTCAAATATTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E283850" ref_strand="+" ref_description="SGN-E283850 [cLER-13-C15]">
      <seq>gagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114636" stop="112593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114336" g_stop="114177" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="219" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="275" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="328" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112893" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="489" r_length="161" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E283850" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114336" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCT</genome_strand>
        <mrna_strand>GAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E297985" ref_strand="+" ref_description="SGN-E297985 [cLET-38-F14]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114627" stop="112593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112893" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="480" r_length="161" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E297985" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCT</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E284778" ref_strand="+" ref_description="SGN-E284778 [cLES-3-N11]">
      <seq>agtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaataaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114619" stop="112598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114319" g_stop="114177" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="311" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112894" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="471" r_length="160" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E284778" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114319" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTC</genome_strand>
        <mrna_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E294444" ref_strand="+" ref_description="SGN-E294444 [cLET-14-B14]">
      <seq>gcaagcacagtaatgagctcgtggagcctaaagccaactttcactctggagaaaatatcagagaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagtaggattccatgttatcttttcaaaaatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114627" stop="112596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112896" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="478" r_length="159" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E294444" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTC-AAAATATT</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCGTGGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGAGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTAGGATTCCATGTTATCTTTTCAAAAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E294445" ref_strand="+" ref_description="SGN-E294445 [cLET-14-B14]">
      <seq>gcaagcacagtaatgagctcgtggagcctaaagccaactttcactctggagaaaatatcagagaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagtaggattccatgttatcttttcaaaaatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114627" stop="112596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112896" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="478" r_length="159" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E294445" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294445" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTC-AAAATATT</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCGTGGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGAGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTAGGATTCCATGTTATCTTTTCAAAAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E291882" ref_strand="+" ref_description="SGN-E291882 [cLET-7-D20]">
      <seq>caaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgatcttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="113623" stop="112599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113323" g_stop="113294" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="83" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113053" g_stop="112899" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="238" r_length="155" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E291882" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113323" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAAT</genome_strand>
        <mrna_strand>CAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGATCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E740955" ref_strand="+" ref_description="SGN-E740955 [LC23CE08]">
      <seq>cagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114620" stop="112598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114320" g_stop="114177" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="203" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="259" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="312" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112901" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="465" r_length="153" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="466" polyA_stop="478"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E740955" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114320" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAA</genome_strand>
        <mrna_strand>CAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E296296" ref_strand="+" ref_description="SGN-E296296 [cLET-19-I4]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114627" stop="112602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112902" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="471" r_length="152" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E296296" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAA</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E296434" ref_strand="+" ref_description="SGN-E296434 [cLET-19-I4]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114627" stop="112602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112902" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="471" r_length="152" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E296434" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAA</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E291388" ref_strand="+" ref_description="SGN-E291388 [cLET-2-D22]">
      <seq>agaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggagaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaaggttaagatgtattccatgttatcttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114650" stop="112604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114350" g_stop="114177" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="233" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="289" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="342" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112904" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="492" r_length="150" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E291388" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114350" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTC</genome_strand>
        <mrna_strand>AGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGAGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGGTTAAGATGTATTCCATGTTATCTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E284732" ref_strand="+" ref_description="SGN-E284732 [cLES-3-C21]">
      <seq>acagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgtaggaggaaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttgggcgcaatagatgttatccttgtattgcactattaagattaagttgtattccatgtaatcttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114621" stop="112604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114321" g_stop="114177" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="204" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="260" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="313" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112904" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="464" r_length="151" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E284732" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114321" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTT-GGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTC</genome_strand>
        <mrna_strand>ACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTAGGAG...............................................................................................................GAACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGGCGCAATAGATGTTATCCTTGTATTGCACTATTAAGATTAAGTTGTATTCCATGTAATCTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E288401" ref_strand="-" ref_description="SGN-E288401 [cLES-16-F19]">
      <seq>tgtatcagtaatgagctcattgagcctaaagccatctttcactctggagaaaatatcagtgaaagggcttccatcactaactagatcttcttcttccttcaaagttgtggctagtggtgttcaagagcttaagactggcaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatatacaacacgaatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114623" stop="112611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114324" g_stop="114177" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="208" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="264" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="317" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112911" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="460" r_length="143" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E288401" ref_strand="-">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288401" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="114324" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCA-CAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTA</genome_strand>
        <mrna_strand>TGTATCAGTAATGAGCTCATTGAGCCTAAAGCCATCTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTAACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTCAAGAGCTTAAGACTGGCAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATATACAACACGAATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E295938" ref_strand="+" ref_description="SGN-E295938 [cLET-27-L15]">
      <seq>agtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttggattgtactattaagtttaagttgtattccatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114619" stop="112613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114319" g_stop="114177" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="311" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112913" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="452" r_length="141" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E295938" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114319" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGT</genome_strand>
        <mrna_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGGATTGTACTATTAAGTTTAAGTTGTATTCCATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E292845" ref_strand="+" ref_description="SGN-E292845 [cLET-11-G16]">
      <seq>aatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgcactattaagtttaagttgtattccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114616" stop="112615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114316" g_stop="114177" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="199" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="255" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="308" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112915" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="447" r_length="139" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E292845" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114316" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCAT</genome_strand>
        <mrna_strand>AATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGCACTATTAAGTTTAAGTTGTATTCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E325507" ref_strand="+" ref_description="SGN-E325507 [cTOC-1-P22]">
      <seq>gcaagcatatatttgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114614" stop="112629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112929" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="444" r_length="125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E325507" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTT</genome_strand>
        <mrna_strand>GCAAGCATATATTTGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E283806" ref_strand="+" ref_description="SGN-E283806 [cLES-1-J11]">
      <seq>caagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattggactattaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114626" stop="112632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114326" g_stop="114177" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="209" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="265" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="318" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112932" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="440" r_length="122" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E283806" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114326" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAG</genome_strand>
        <mrna_strand>CAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGGACTATTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E396288" ref_strand="+" ref_description="SGN-E396288 [TUS-46-H10]">
      <seq>caagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttatccatatgggcggtgaccttgcttggcattcttgcaggaggtgatcaccttgtctacgacacaagtgctttggctcaatatatgttatcattgtattgtactattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114626" stop="112633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114326" g_stop="114177" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="209" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="265" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="318" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112933" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="439" r_length="121" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E396288" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114326" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAA</genome_strand>
        <mrna_strand>CAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTATCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGATCACCTTGTCTACGACACAAGTGCTTTGGCTCAATATATGTTATCATTGTATTGTACTATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E326235" ref_strand="+" ref_description="SGN-E326235 [cTOC-16-H8]">
      <seq>aggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaaggtgtggctagtggagttaacaaacttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggatgatgcctcaagcaggaagccctagggaaagggtgtgtaccaatatgatgacaaatatggagctaatgttgatggataacagtcccatctactacaccgatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcgttcttgcatgaggtgctctccgtgtctacacactagagctttggcgccatagacgttatccttgtattggactatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114645" stop="112635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114345" g_stop="114177" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="228" r_length="59" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="285" r_length="57" r_score="0.946"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="338" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112935" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="456" r_length="118" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E326235" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114345" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGAT-ACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATT</genome_strand>
        <mrna_strand>AGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGGTGTGGCTAGTGGAGTTAACAAACTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGATGATGCCTCAAGCAGGAAGCCCTAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGATGACAAATATGGAGCTAATGTTGATGGATAACAG............................................................................TCCCATCTACTACACCGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCGTTCTTGCATGAGGTGCTCTCCGTGTCTAC-ACACTAGAGCTTTGGCGCCATAGACGTTATCCTTGTATTGGACTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E290272" ref_strand="+" ref_description="SGN-E290272 [cLET-5-P1]">
      <seq>aaaatggcatgcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114633" stop="112635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114333" g_stop="114177" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="216" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="272" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="325" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112935" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="444" r_length="119" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E290272" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114333" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATT</genome_strand>
        <mrna_strand>AAAATGGCATGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E286215" ref_strand="+" ref_description="SGN-E286215 [cLES-11-E12]">
      <seq>taatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114617" stop="112645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114317" g_stop="114177" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="200" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="256" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="309" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112945" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="418" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E286215" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114317" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTA</genome_strand>
        <mrna_strand>TAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E281899" ref_strand="+" ref_description="SGN-E281899 [cLES-2-L11]">
      <seq>aggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114638" stop="112651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114338" g_stop="114177" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="221" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="277" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="330" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112951" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="433" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E281899" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114338" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATC</genome_strand>
        <mrna_strand>AGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E280952" ref_strand="+" ref_description="SGN-E280952 [cLER-7-G23]">
      <seq>taatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114617" stop="112652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114317" g_stop="114177" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="200" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="256" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="309" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112952" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="411" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E280952" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114317" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTAT</genome_strand>
        <mrna_strand>TAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E279759" ref_strand="+" ref_description="SGN-E279759 [cLER-8-C19]">
      <seq>tgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaagcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114614" stop="112652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114314" g_stop="114177" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="197" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="253" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="306" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112952" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="408" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E279759" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114314" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTAT</genome_strand>
        <mrna_strand>TGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAAGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E279231" ref_strand="+" ref_description="SGN-E279231 [cLEL-4-I23]">
      <seq>gcacgaggtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggctcccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacacgtgctttggcgcaatagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114623" stop="112657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="208" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="264" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="317" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112957" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="414" r_length="97" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E279231" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGAT</genome_strand>
        <mrna_strand>GCACG-A-GGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTCCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACACGTGCTTTGGCGCAATAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E336394" ref_strand="+" ref_description="SGN-E336394 [cTOE-4-C3]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114627" stop="112662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112962" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="411" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E336394" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAA</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E295181" ref_strand="+" ref_description="SGN-E295181 [cLET-20-L21]">
      <seq>agaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114650" stop="112665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114350" g_stop="114177" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="233" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="289" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="342" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112965" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="431" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E295181" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114350" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCG</genome_strand>
        <mrna_strand>AGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E289010" ref_strand="+" ref_description="SGN-E289010 [cLES-17-B10]">
      <seq>gagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcacgcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114636" stop="112665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114336" g_stop="114177" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="219" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="275" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="328" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112965" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="417" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E289010" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114336" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCG</genome_strand>
        <mrna_strand>GAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCACGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E281073" ref_strand="+" ref_description="SGN-E281073 [cLER-7-G11]">
      <seq>agtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114619" stop="112665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114319" g_stop="114177" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="311" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112965" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="400" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E281073" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114319" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCG</genome_strand>
        <mrna_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E278378" ref_strand="+" ref_description="SGN-E278378 [cLEL-2-B14]">
      <seq>gcacgaggctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagaccctcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114615" stop="112665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114318" g_stop="114177" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="201" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="257" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="310" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112965" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="399" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E278378" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114318" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCG</genome_strand>
        <mrna_strand>GCACGAGGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGACCCTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E278099" ref_strand="+" ref_description="SGN-E278099 [cLER-4-K14]">
      <seq>ctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114610" stop="112665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114310" g_stop="114177" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="193" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="249" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="302" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112965" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="391" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E278099" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114310" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCG</genome_strand>
        <mrna_strand>CTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E284566" ref_strand="+" ref_description="SGN-E284566 [cLES-3-F18]">
      <seq>tcattgagcctaaagccaactttcactctggagaaaatatcaatgaaagggcttccatcacttactagatcttcttcttccttcaaagttgaggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaagcaggaagcccaagggaaagggtgtgtcccaatatgttgacaaatatggagctaatgttgatggatacagccccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggagaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114609" stop="112665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114309" g_stop="114177" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="192" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="248" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="301" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112965" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="390" r_length="89" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E284566" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114309" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCG</genome_strand>
        <mrna_strand>TCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAATGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGAGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAAGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTCCCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................CCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGAGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E294085" ref_strand="+" ref_description="SGN-E294085 [cLET-13-E10]">
      <seq>agaaaaggttataggagaaaatggcaagcacaggaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctattttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattctagcaggaggagctctccttgtctacaacacaagtgctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114650" stop="112668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114350" g_stop="114177" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="233" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="289" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="342" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112968" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="428" r_length="86" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E294085" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114350" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTG</genome_strand>
        <mrna_strand>AGAAAAGGTTATAGGAGAAAATGGCAAGCACAGGAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATTTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTAGCAGGAGGAGCTCTCCTTGTCTACAACACAAGTGCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E293269" ref_strand="+" ref_description="SGN-E293269 [cLET-18-I7]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114627" stop="112668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112968" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="405" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E293269" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTG</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E283962" ref_strand="+" ref_description="SGN-E283962 [cLER-13-N5]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114627" stop="112669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112969" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="404" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E283962" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTT</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E735796" ref_strand="+" ref_description="SGN-E735796 [LC03AD04]">
      <seq>cccgattaatagaaaaggtaataggagaaaatggcaagcacagtactgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcacgaggcgctctccttgtctacaacacaagtgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114659" stop="112670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114360" g_stop="114177" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="243" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="299" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="352" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112970" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="436" r_length="84" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E735796" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114360" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACAAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTT</genome_strand>
        <mrna_strand>CCCGATTAATAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTACTGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCACGAGGCGCTCTCCTTGTCTACAACACAAGTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E284981" ref_strand="+" ref_description="SGN-E284981 [cLER-19-K9]">
      <seq>agtaatgagctcttttagcctatagccaactttcactctggagaggaatatcagggaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggcctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114619" stop="112670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114319" g_stop="114177" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="203" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="259" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="312" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112970" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="396" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E284981" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114319" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGA-AAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTT</genome_strand>
        <mrna_strand>AGTAATGAGCTCTTTTAGCCTATAGCCAACTTTCACTCTGGAGAGGAATATCAGGGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGCCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E308569" ref_strand="+" ref_description="SGN-E308569 [cLEY-21-K7]">
      <seq>ctcgtgccgaattcggcacgaggacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagggaaagggctgccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggggaccttgcttggcattcttgcaggaggtgctcttcttgtctacaacacaagggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114626" stop="112671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114322" g_stop="114177" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="168" r_length="146" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="227" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="283" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="336" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112971" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="419" r_length="83" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E308569" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114322" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCT</genome_strand>
        <mrna_strand>GACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGGGAAAGGGCTGCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGGGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTTCTTGTCTACAACACAAGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E296928" ref_strand="+" ref_description="SGN-E296928 [cLET-26-O10]">
      <seq>aaaatatcagtgaaagggcgtccatcacttactagatcttcttcttccttcaaagttgtggcttgtggtgtcaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgacagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatgtgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctacaagtggtgatgactatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114576" stop="112671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114276" g_stop="114177" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="159" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="215" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="268" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112971" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="351" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E296928" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114276" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCT</genome_strand>
        <mrna_strand>AAAATATCAGTGAAAGGGCGTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTTGTGGTGTCAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGACAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATGTGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTACAAGTGGTGATGACTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E290957" ref_strand="+" ref_description="SGN-E290957 [cLET-8-I4]">
      <seq>ggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114628" stop="112678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114328" g_stop="114177" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="211" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="267" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="320" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112978" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="396" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E290957" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114328" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACAC</genome_strand>
        <mrna_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E293673" ref_strand="+" ref_description="SGN-E293673 [cLET-21-K9]">
      <seq>cacagaaatgagctccttgtttctaatttcactttcactctcgagaaactatcactgaaggggcttccatcacttactagatcttcttcttccttcaaagctgtggctagtgctgttaataatctcaagactgacaaaccctatcgtattaatggaagcatggccttaccagatggggttgatgcctcaagcaagaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggaactaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttacccatatgggcggtgaccttgcttggcattcttgcaggaggagctctccttgtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114591" stop="112684"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114322" g_stop="114177" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.870"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.996" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="204" r_length="59" r_score="0.898"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="260" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="313" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112984" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="383" r_length="70" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E293673" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114322" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTA</genome_strand>
        <mrna_strand>CACAGAAATGAGCTCCTTGTTTCTAATTTC-ACTTTCACTCTCGAGAAACTATCACTGAAGGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGCTGTGGCTAGTGCTGTTAATAATCTCAAGACTGACAAACCCTATC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATGGAAGCATGGCCTTACCAGATGGGGTTGATGCCTCAAGCAAGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAACTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTACCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGAGCTCTCCTTGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E216714" ref_strand="+" ref_description="SGN-E216714 [cLEL-1-C15]">
      <seq>ggcctctttctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagcggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114610" stop="112686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114310" g_stop="114177" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="143" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="311" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112986" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="379" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E216714" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114310" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112986"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTC</genome_strand>
        <mrna_strand>CTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGCGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E337484" ref_strand="+" ref_description="SGN-E337484 [cTOE-11-J15]">
      <seq>cacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatattggcggtgaccttgcttggcattctttgcagaggtgctctcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114622" stop="112690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114322" g_stop="114177" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="205" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="261" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="314" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112990" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="378" r_length="64" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E337484" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114322" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCT</genome_strand>
        <mrna_strand>CACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATTGGCGGTGACCTTGCTTGGCATTCTTTGCAGAGGTGCTCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E284238" ref_strand="+" ref_description="SGN-E284238 [cLER-16-M4]">
      <seq>agaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggttgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114635" stop="112694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114335" g_stop="114177" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="218" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="274" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="327" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112994" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="387" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E284238" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114335" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTC</genome_strand>
        <mrna_strand>AGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGTTGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E284745" ref_strand="+" ref_description="SGN-E284745 [cLES-3-M23]">
      <seq>aagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgcggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtcttcaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114625" stop="112704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114325" g_stop="114177" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="208" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="264" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="317" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="113004" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="367" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E284745" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114325" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="113004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCA</genome_strand>
        <mrna_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGCGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTTCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E293376" ref_strand="+" ref_description="SGN-E293376 [cLET-18-H1]">
      <seq>agaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggggaccttgcttggcattcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114650" stop="112706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114350" g_stop="114177" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="233" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="289" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="342" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="113006" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="390" r_length="48" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E293376" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114350" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="113006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTG</genome_strand>
        <mrna_strand>AGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGGGACCTTGCTTGGCATTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E280187" ref_strand="+" ref_description="SGN-E280187 [cLEL-7-O20]">
      <seq>gcacgaggtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggctcccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggcgaccttgcttggcattcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114623" stop="112706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="208" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="264" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="317" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="113006" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="365" r_length="48" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E280187" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="113006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTG</genome_strand>
        <mrna_strand>GCACG-A-GGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTCCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGCGACCTTGCTTGGCATTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E277670" ref_strand="+" ref_description="SGN-E277670 [cLEL-5-A21]">
      <seq>gcacgaggtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtcccaagtggnggatgtctatgttgggaggtaccactggcttagccatatggggcggtgaccttgcttggcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114623" stop="112709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="208" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="264" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="318" r_length="54" r_score="0.887"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="0.88"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="113009" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="364" r_length="46" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E277670" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="113009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGT-GATGTCTATGTT-GGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATAT-GGGCGGTGACCTTGCTTGGCATTC</genome_strand>
        <mrna_strand>GCACG-A-GGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTC-CCAAGTGGNGGATGTCTATGTTGGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGGCGGTGACCTTGCTTGGCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E289871" ref_strand="+" ref_description="SGN-E289871 [cLET-9-N6]">
      <seq>agtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaagcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114619" stop="112709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114319" g_stop="114177" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="311" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="113009" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="356" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E289871" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114319" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="113009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTC</genome_strand>
        <mrna_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAAGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E298979" ref_strand="+" ref_description="SGN-E298979 [cLET-42-O20]">
      <seq>agtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114619" stop="112709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114319" g_stop="114177" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="311" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="113009" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="356" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E298979" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114319" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="113009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTC</genome_strand>
        <mrna_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E281246" ref_strand="+" ref_description="SGN-E281246 [cLEL-1-M9]">
      <seq>gcacgaggtaataggagaaaatggcatgcacagtaatgagctcattgagcctggggccaactttcactctggagaaaaccccagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114645" stop="112716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114350" g_stop="114177" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="233" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="289" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="342" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="113016" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="380" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E281246" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114350" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="113016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTT</genome_strand>
        <mrna_strand>GCACGAGGTAATAGGAGAAAATGGCATGCACAGTAATGAGCTCATTGAGCCTGGGGCCAACTTTCACTCTGGAGAAAACCCCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E277294" ref_strand="+" ref_description="SGN-E277294 [cLEL-3-H18]">
      <seq>gcacgagagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcaccgcaccgggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114643" stop="112716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114343" g_stop="114177" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="226" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="282" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="335" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="113016" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="373" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E277294" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114343" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="113016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTG-AAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTT</genome_strand>
        <mrna_strand>GCACGA-GAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCACCGCACCGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E281275" ref_strand="+" ref_description="SGN-E281275 [cLEL-1-E12]">
      <seq>gcacgagcagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114627" stop="112718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="113018" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="355" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E281275" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="113018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGC</genome_strand>
        <mrna_strand>GCACGAGCAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E228250" ref_strand="+" ref_description="SGN-E228250 [cLED-2-P11]">
      <seq>caagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114626" stop="112728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114326" g_stop="114177" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="209" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="265" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="318" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="113028" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="344" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E228250" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114326" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="113028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCG</genome_strand>
        <mrna_strand>CAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E239515" ref_strand="+" ref_description="SGN-E239515 [cLED-23-L22]">
      <seq>gaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114634" stop="112729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114334" g_stop="114177" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="217" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="273" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="326" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="113029" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="351" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E239515" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114334" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="113029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGC</genome_strand>
        <mrna_strand>GAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E338463" ref_strand="+" ref_description="SGN-E338463 [cTOE-15-D13]">
      <seq>gaaaatggcaagcacagtaatgagctcattgagccctaaagccaacctttcactctggagaaaatatcagtgaaagggcttccatcacttacctagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggtcgatgccctcaagcaggaagcccaacggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggataccagtcccatctaccacacggatgaatggtctccaagtggtgatgtctatgttggacgtaccactggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114634" stop="112856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114334" g_stop="114177" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="221" r_length="60" r_score="0.915"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="278" r_length="57" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="331" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="113042" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="343" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E338463" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114334" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="113042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGGCAAGCACAGTAATGAGCTCATTGAGC-CTAAAGCCAA-CTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTA-CTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATG-CCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATA-CAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCT</genome_strand>
        <mrna_strand>GAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCCTAAAGCCAACCTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACCTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTCGATGCCCTCAAGCAGGAAGCCCAAC............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACCAG............................................................................TCCCATCTACCACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAC...............................................................................................................GTACCACTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E290219" ref_strand="+" ref_description="SGN-E290219 [cLET-5-I2]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114627" stop="112856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="319" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="113046" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="327" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E290219" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="113046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACT</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E280138" ref_strand="+" ref_description="SGN-E280138 [cLEL-7-K17]">
      <seq>gcacgagagctcattgagcctaaagcctactttcactctggagaaaatatcaggggaagggcttccatcacttactagacctccttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagcggtgatgtctatgttggaggtaccact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114613" stop="112856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114323" g_stop="114177" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="311" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="113046" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="319" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E280138" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114323" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="113046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACT</genome_strand>
        <mrna_strand>GCAC-G--A-GAGCTCATTGAGCCTAAAGCCTACTTTCACTCTGGAGAAAATATCAGGGGAAGGGCTTCCATCACTTACTAGACCTCCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGCGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E289877" ref_strand="+" ref_description="SGN-E289877 [cLET-9-P8]">
      <seq>agtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114619" stop="112866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114319" g_stop="114177" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113166" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="310" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E289877" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>310</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114319" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGA</genome_strand>
        <mrna_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E284095" ref_strand="+" ref_description="SGN-E284095 [cLER-13-B17]">
      <seq>agtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114619" stop="112868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114319" g_stop="114177" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="202" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="258" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113168" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="308" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E284095" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114319" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTG</genome_strand>
        <mrna_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E291402" ref_strand="+" ref_description="SGN-E291402 [cLET-2-J4]">
      <seq>aagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagggaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114625" stop="112871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114325" g_stop="114177" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="208" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="264" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113171" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="311" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E291402" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>311</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114325" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATG</genome_strand>
        <mrna_strand>AAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGGGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E293163" ref_strand="+" ref_description="SGN-E293163 [cLET-12-D16]">
      <seq>tggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114581" stop="112873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114281" g_stop="114177" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="164" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="220" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113173" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="265" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E293163" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>265</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114281" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTA</genome_strand>
        <mrna_strand>TGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E296555" ref_strand="+" ref_description="SGN-E296555 [cLET-19-J20]">
      <seq>taatgagctcattgagcctaaattcaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114617" stop="112881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114317" g_stop="114177" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="200" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="256" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113181" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="293" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E296555" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>293</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114317" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGT</genome_strand>
        <mrna_strand>TAATGAGCTCATTGAGCCTAAATTCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E296407" ref_strand="+" ref_description="SGN-E296407 [cLET-19-H2]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114627" stop="112886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113186" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="298" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E296407" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAA</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E277787" ref_strand="+" ref_description="SGN-E277787 [cLEL-5-A19]">
      <seq>gcacgaggaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaaggggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114638" stop="112894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114343" g_stop="114177" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="224" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="281" r_length="57" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113194" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="305" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E277787" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114343" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAA-GGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATG</genome_strand>
        <mrna_strand>GCACGAGGA-AAA-TGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E289648" ref_strand="+" ref_description="SGN-E289648 [cLET-4-P9]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114627" stop="112894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113194" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="290" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E289648" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>290</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATG</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E291582" ref_strand="+" ref_description="SGN-E291582 [cLET-6-O20]">
      <seq>cacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaagcacgaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctaccacacggatgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114622" stop="112994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114322" g_stop="114177" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="205" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="261" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113194" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="285" r_length="24" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E291582" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>285</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114322" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATG</genome_strand>
        <mrna_strand>CACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAAGCACGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACCACACGGATGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E293373" ref_strand="+" ref_description="SGN-E293373 [cLET-18-F9]">
      <seq>gaaagggcttccatcacttactaaatctttttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaagcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114565" stop="112894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114265" g_stop="114177" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="148" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="204" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113194" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="228" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E293373" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>228</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114265" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATG</genome_strand>
        <mrna_strand>GAAAGGGCTTCCATCACTTACTAAATCTTTTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAAGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E290237" ref_strand="+" ref_description="SGN-E290237 [cLET-5-O4]">
      <seq>agaaaaggtaataggagaaaatggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgaaagatggggttgatgcctcaagcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114650" stop="112895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114350" g_stop="114177" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="233" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="289" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113195" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="312" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E290237" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>312</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114350" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAAT</genome_strand>
        <mrna_strand>AGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAAAGATGGGGTTGATGCCTCAAGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E282342" ref_strand="+" ref_description="SGN-E282342 [cLER-18-M9]">
      <seq>acagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114621" stop="112898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114321" g_stop="114177" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="204" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="260" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113198" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="280" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E282342" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>280</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114321" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATG</genome_strand>
        <mrna_strand>ACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E278368" ref_strand="+" ref_description="SGN-E278368 [cLEL-2-N1]">
      <seq>gcacgagaaatggcaagttcagtaatgagctcattgagcctaaagggaactttgactctggagaaaatatccgtgaaacggctttcatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114638" stop="112995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114340" g_stop="114177" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="222" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113295" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="277" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E278368" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>278</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114340" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACA</genome_strand>
        <mrna_strand>GCACGAGA-AATGGCAAGTTCAGTAATGAGCTCATTGAGCCTAAAGGGAACTTTGACTCTGGAGAAAATATCCGTGAAACGGCTTTCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E295977" ref_strand="+" ref_description="SGN-E295977 [cLET-27-A4]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagctgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114627" stop="112995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113295" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="265" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E295977" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>265</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACA</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGCTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E281570" ref_strand="+" ref_description="SGN-E281570 [cLEL-1-J12]">
      <seq>gcacgagcagtaatgagctcattgttcctaaagccaactttcactctggagagaatatcagtgaaagggcttcactaacttactagatcttcttattccttcaaaggtgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaatggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114627" stop="112997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113297" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="263" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E281570" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>263</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATA</genome_strand>
        <mrna_strand>GCACGAGCAGTAATGAGCTCATTGTTCCTAAAGCCAACTTTCACTCTGGAGAGAATATCAGTGAAAGGGCTTCACTAACTTACTAGATCTTCTTATTCCTTCAAAGGTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAT............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E294778" ref_strand="+" ref_description="SGN-E294778 [cLET-17-F9]">
      <seq>gcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114627" stop="112997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114327" g_stop="114177" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="210" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113297" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="263" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E294778" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>263</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114327" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATA</genome_strand>
        <mrna_strand>GCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E289094" ref_strand="+" ref_description="SGN-E289094 [cLES-18-G22]">
      <seq>gagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114613" stop="113022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114313" g_stop="114177" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="196" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113322" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="224" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E289094" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>224</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114313" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACA</genome_strand>
        <mrna_strand>GAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E290262" ref_strand="+" ref_description="SGN-E290262 [cLET-5-L3]">
      <seq>gagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114613" stop="113248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114313" g_stop="114177" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113548" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="154" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E290262" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>154</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114313" e_stop="114177"/>
          <exon e_start="113564" e_stop="113548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATG</genome_strand>
        <mrna_strand>GAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E293842" ref_strand="+" ref_description="SGN-E293842 [cLET-37-G10]">
      <seq>agtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114619" stop="113868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114319" g_stop="114177" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E293842" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>143</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114319" e_stop="114177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG</genome_strand>
        <mrna_strand>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E286051" ref_strand="+" ref_description="SGN-E286051 [cLES-13-K13]">
      <seq>gagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114613" stop="113868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114313" g_stop="114177" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E286051" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>137</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114313" e_stop="114177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG</genome_strand>
        <mrna_strand>GAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E379596" ref_strand="-" ref_description="SGN-E379596 [TUS-3-N18]">
      <seq>aaatggtttcctttctctggcttcctattctttcttctttgtgttggtgggtggtttaggaggtgaaggggagcagcgtggttgagaccgagactatcaggtggctaagtttccttgtggtggtcttgattcttcatcaaggtggcaaagatagtttggctctaaaaatagatacggtactggccttctgtgatgaaatgtgcttgaaggacagagcttctatccaagaagacggcaatccacatcacaaagagtttggcttgattcaaccaatgagcggaaggagattgtccaaagctgtacacactccatgatgtgcgtgccaggtggatttcatgctggagttactgtaaatagggttggataaaaaacatttttgcgagagtgatctgcattccagccccctctgaagcacaggagtcagctgcatttcaaatgattacccaattacagactatggcagaccacacccattacatttaatgatggcaaagaaacagcaacaccaatatttttgaatcctattaatggctaccataccatagtactgtattagtttcattactttccagaagcatatattatgtgtgtctgtgaaactgaatttgttgtcttagaatattagttggttgcaacccgtatcagtgctttgaacgaaaatcaaggccaaatacattcggtgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="117629" stop="116048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117329" g_stop="117189" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117188" i_stop="117093" i_length="96">
            <donor d_prob="0.527" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117092" g_stop="116908" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="326" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116907" i_stop="116705" i_length="203">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.896" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116704" g_stop="116348" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="685" r_length="359" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E379596" ref_strand="-">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379596" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="117329" e_stop="117189"/>
          <exon e_start="117092" e_stop="116908"/>
          <exon e_start="116704" e_stop="116348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGTTTCCTTTCTCTTGCTTCCTATTCTTTCTTCTTTGTGTTGGTGGGTGGTTTAGGAGGTGAAGGGGAGCAGCGTGGTTGAGACCGAGACTATCAGGTGGCTAAGTTTCCTTGTGGTGGTCTTGATTCTTCATCAAGGTTTGGTAGTTTCTTGGAGTCTTGAACTGCTGTATCATGAACTTGAACTAAATTACTGTAGGCCAATGTGCTCATGTTTATTTTAATGCCTTGTAGGTGGCAAAGATAGTTTGGCTCTAAAAATAGATACGGTACTGGCCTTCTGTGATGAAATGTGCTTGAAGGACAGAGCTTCTATCCAAGAAGACGGCAATCCACATCACAAAGAGTTTGGCTTGATTCAACCAATGAGCGGAAGGAGATTGTCCAAAGCTGTACACACTCCATGATGTGCGTGCCAGGCATGTTTTGGCATCAGAACTTGCTTAAGTTTTATCTCCTCTTTTATCATTGTTTGTCTTGATCCACTCCATATATATTATGATGTTTGTGCTCTTGGTCTGGCAGTATGTCTGATAATTTGTTCCTTTGTTGAACGATCCTTGGAAATGCTTGTGTTTTTCATTCCCGATTCAACTAATCCTTGGAGTTCATTTTCTCATAGGTGGATTTCATGCTGGAGTTACTGTAAATAGGGTTGGAT-TTGTACATTTTTGCGAGAGTGATCTGCATTCCAGCCCCCTCTGAAGCACAGGAGTCAGCTGCATTTCAAATGATTACCCAATTACAGACTATGGCAGACCACACCCATTACATTTAATGATGGCAAAGAAACAGCAACACCAATATTTTTGAATCCTATTAATGGCTACCATACCATAGTACTGTATTAGTTTCATTACTTTCCAGAAGCAACTGTTATGTGTGTCTTTG-AGCTGAATTTGTTGTCTTAGAATATTAGTTGGTTGCAACCCGTATCAGTGCTTTGAACATTTATCAAGGCCAAATACATACGGTGCCT</genome_strand>
        <mrna_strand>AAATGGTTTCCTTTCTCTGGCTTCCTATTCTTTCTTCTTTGTGTTGGTGGGTGGTTTAGGAGGTGAAGGGGAGCAGCGTGGTTGAGACCGAGACTATCAGGTGGCTAAGTTTCCTTGTGGTGGTCTTGATTCTTCATCAAG................................................................................................GTGGCAAAGATAGTTTGGCTCTAAAAATAGATACGGTACTGGCCTTCTGTGATGAAATGTGCTTGAAGGACAGAGCTTCTATCCAAGAAGACGGCAATCCACATCACAAAGAGTTTGGCTTGATTCAACCAATGAGCGGAAGGAGATTGTCCAAAGCTGTACACACTCCATGATGTGCGTGCCAG...........................................................................................................................................................................................................GTGGATTTCATGCTGGAGTTACTGTAAATAGGGTTGGATAAAAAACATTTTTGCGAGAGTGATCTGCATTCCAGCCCCCTCTGAAGCACAGGAGTCAGCTGCATTTCAAATGATTACCCAATTACAGACTATGGCAGACCACACCCATTACATTTAATGATGGCAAAGAAACAGCAACACCAATATTTTTGAATCCTATTAATGGCTACCATACCATAGTACTGTATTAGTTTCATTACTTTCCAGAAGCATATATTATGTGTGTCTGTGAAACTGAATTTGTTGTCTTAGAATATTAGTTGGTTGCAACCCGTATCAGTGCTTTGAACGAAAATCAAGGCCAAATACATTCGGTGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E379660" ref_strand="+" ref_description="SGN-E379660 [TUS-3-N18]">
      <seq>ttagttgcctctgtatcttcttttttttccttggtaaagatatttattaaaaatggtatcaagatggcacagaaaagactacatgacctaaactacaccactcgctccaaacatactacatattttcccctaataagtttaaaaaacccacttccatcacctccaacggaaagaggaattttatccatcaaagaaaaccaaaaatccagcaagtgtctagtaaatggagcaaagaaagagcatccccataacttaaccatcctatcaagagtacaactattagtacaaacatacaaattcttgatgcatttgtttctgactctgggtatctgcagcctccgtatctccttttagacccattttattccaagctgacgtgatgtgtagtggaagtttcctaacagattcaaccttttaggagattcatcatagctagatggttttcatgatgctgctctacctacctgtacatttcctttaatgcatgctttcaatgatgtcaaaactacagcaattgctccatcctaggtggggggggggggggggggggaccccaaaaaaggggccctttccctggctcccaattttttcttcttgggggggggggggggtttagaagggaaaggggaccaccggggtaaaaaccaaaatacaggggggaaaaattccctgggggggggctggattcttcacaaggggggaaaaaaaagttgggttcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="118185" stop="117024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117885" g_stop="117189" g_length="697"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="697" r_length="697" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117188" i_stop="117093" i_length="96">
            <donor d_prob="0.527" d_score="0.64"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117092" g_stop="117064" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="726" r_length="29" r_score="0.724"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E379660" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117885" e_stop="117189"/>
          <exon e_start="117092" e_stop="117064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTTGCCTCTGTATCTTCTTTTTTTTCCTTGGTAAAGATATTTATTAAAAATGGTATCAAGATGGCACAGAAAAGACTACATGACCTAAACTACACCACTCGCTCCAAACATACTACATATTTTCCCCTAATAAGTTTAAAAAACCCACTTCCATCACCTCCAACGGAAAGAGGAATTTTATCCATCAAAGAAAACCAAAAATCCAGCAAGTGTCTAGTAAATGGAGCAAAGAAAGAGCATCCCCATAACTTAACCATCCTATCAAGAGTACAACTATTAGTACAAACATACAAATTCTTGATGCATTTGTTTCTGACTCTGGGTATCTGCAGCCTCCGTATCTCCTTTTAGACCCATTTTATTCCAAGCTGACGTGATGTGTAGTGGAAGTTTCCTAACAGATTCAACCTTTTAGGAGATTCATCATAGCTAGATGGTTTTCATGATGCTGCTCTACCTACCTGTACATTTCCTTTAATGCATGCTTTCAATGATGTCAAAACTACAGCAATTGCTCCATCCTAGGT-GGGGGGGGGGGGGGGGGGGAGCTCTAAAATGGTTTCCTTTCTCTTGCTTCCTATTCTTTCTTCTTTGTGTTGGTGGGTGGTTTAGGAGGTGAAGGGGAGCAGCGTGGTTGAGACCGAGACTATCAGGTGGCTAAGTTTCCTTGTGGTGGTCTTGATTCTTCATCAAGGTTTGGTAGTTTCTTGGAGTCTTGAACTGCTGTATCATGAACTTGAACTAAATTACTGTAGGCCAATGTGCTCATGTTTATTTTAATGCCTTGTAGGTGGCAAAGATAGTTTGGCTCTAAAAATA</genome_strand>
        <mrna_strand>TTAGTTGCCTCTGTATCTTCTTTTTTTTCCTTGGTAAAGATATTTATTAAAAATGGTATCAAGATGGCACAGAAAAGACTACATGACCTAAACTACACCACTCGCTCCAAACATACTACATATTTTCCCCTAATAAGTTTAAAAAACCCACTTCCATCACCTCCAACGGAAAGAGGAATTTTATCCATCAAAGAAAACCAAAAATCCAGCAAGTGTCTAGTAAATGGAGCAAAGAAAGAGCATCCCCATAACTTAACCATCCTATCAAGAGTACAACTATTAGTACAAACATACAAATTCTTGATGCATTTGTTTCTGACTCTGGGTATCTGCAGCCTCCGTATCTCCTTTTAGACCCATTTTATTCCAAGCTGACGTGATGTGTAGTGGAAGTTTCCTAACAGATTCAACCTTTTAGGAGATTCATCATAGCTAGATGGTTTTCATGATGCTGCTCTACCTACCTGTACATTTCCTTTAATGCATGCTTTCAATGATGTCAAAACTACAGCAATTGCTCCATCCTAGGTGGGGGGGGGGGGGGGGGGGGACCCCAAAAAAGGGGCCCTTTCCCTGGCTCCCAATTTTTTCTTCTTGGGGGGGGGGGGGGGTTTAGAAGGGAAAGGGGACCACCGGGGTAAAAACC-AAAATACAGGGGGGAAAAATTCCCTGGGGGGGGGCTGGATTCTTCACAAGG................................................................................................GGGGAAAAAAAAGTTGGGTTCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-r9qKPR/sgn_ests_tomato" ref_id="SGN-E209394" ref_strand="+" ref_description="SGN-E209394 [cLEC-53-O22]">
      <seq>ttaggcgcctatggatcttctttttttaacttggcaaagatatttattaaaaacggaatcaaaatggcacagaaaagactacatgacctaaactacaccactcgctccaaacatactacatattttcccctagtaagtttaaaaaacccacttccatcacctccaacggaaagaggaattttatccatcaaagaaaaccaaaaatccatcaagagtctagtaaagggagcaaagaaagagcatccccataacttaaccatcctatcaagagtacaactattagtacaaacatacaaatgcttgaagcatttgttactgactctgggtatctgcagcctccgtatctccttttagacccattttattccaagctgacgtgatgcgtactggaagtttcctaacaagatcaaccttttaggagactcatcatagctagatggctttcatgatgctgctctacctacctgaacatttcctttaatgcatgctttcaatgatgtcaaaactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ryhAB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="118185" stop="117077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117885" g_stop="117377" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-E209394" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117885" e_stop="117377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTTGCCTCTGTATCTTCTTTTTTTTCCTTGGTAAAGATATTTATTAAAAATGGTATCAAGATGGCACAGAAAAGACTACATGACCTAAACTACACCACTCGCTCCAAACATACTACATATTTTCCCCTAATAAGTTTAAAAAACCCACTTCCATCACCTCCAACGGAAAGAGGAATTTTATCCATCAAAGAAAACCAAAAATCCAGCAAGTGTCTAGTAAATGGAGCAAAGAAAGAGCATCCCCATAACTTAACCATCCTATCAAGAGTACAACTATTAGTACAAACATACAAATTCTTGATGCATTTGTTTCTGACTCTGGGTATCTGCAGCCTCCGTATCTCCTTTTAGACCCATTTTATTCCAAGCTGACGTGATGTGTAGTGGAAGTTTCCTAACAGATTCAACCTTTTAGGAGATTCATCATAGCTAGATGGTTTTCATGATGCTGCTCTACCTACCTGTACATTTCCTTTAATGCATGCTTTCAATGATGTCAAAACTAC</genome_strand>
        <mrna_strand>TTAGGCGCCTATGGATCTTCTTTTTTTAACTTGGCAAAGATATTTATTAAAAACGGAATCAAAATGGCACAGAAAAGACTACATGACCTAAACTACACCACTCGCTCCAAACATACTACATATTTTCCCCTAGTAAGTTTAAAAAACCCACTTCCATCACCTCCAACGGAAAGAGGAATTTTATCCATCAAAGAAAACCAAAAATCCATCAAGAGTCTAGTAAAGGGAGCAAAGAAAGAGCATCCCCATAACTTAACCATCCTATCAAGAGTACAACTATTAGTACAAACATACAAATGCTTGAAGCATTTGTTACTGACTCTGGGTATCTGCAGCCTCCGTATCTCCTTTTAGACCCATTTTATTCCAAGCTGACGTGATGCGTACTGGAAGTTTCCTAACAAGATCAACCTTTTAGGAGACTCATCATAGCTAGATGGCTTTCATGATGCTGCTCTACCTACCTGAACATTTCCTTTAATGCATGCTTTCAATGATGTCAAAACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>520</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="392" PGL_stop="4351"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="392" e_stop="495"/>
            <exon e_start="695" e_stop="759"/>
            <exon e_start="1667" e_stop="1818"/>
            <exon e_start="3455" e_stop="3687"/>
            <exon e_start="4215" e_stop="4351"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.480" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.874" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.987" e_score="0.993"/>
          <exon-intron don_prob="0.993" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="392" e_stop="495" e_length="104"/>
          </exon>
          <intron i_serial="1" don_prob="0.480" acc_prob="0.941">
            <gDNA_intron_boundary i_start="496" i_stop="694" i_length="199"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="695" e_stop="759" e_length="65"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.874">
            <gDNA_intron_boundary i_start="760" i_stop="1666" i_length="907"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="1667" e_stop="1818" e_length="152"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.987">
            <gDNA_intron_boundary i_start="1819" i_stop="3454" i_length="1636"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="3455" e_stop="3687" e_length="233"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.994">
            <gDNA_intron_boundary i_start="3688" i_stop="4214" i_length="527"/>
          </intron>
          <exon e_serial="5" e_score="0.949">
            <gDNA_exon_boundary e_start="4215" e_stop="4351" e_length="137"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="392" stop="495"/>
              <exon start="695" stop="759"/>
              <exon start="1667" stop="1818"/>
              <exon start="3455" stop="3687"/>
              <exon start="4215" stop="4351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314264" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATTGCAGAAGCTGCTGCACGGCATTTCCTCACATCTATTACTGTCTATCCAATAAAGTCTTGTGCGGGATTTAGTGTGGATCAGTGGCCTCTAACATCTACTG : GGTTATTGCATGATCGTGAATGGATTCTCAAGAGCACAACCGGTGAAATTCTTACCCAAAAGAAG : GTTCCAGAAATGTGCTATATCTCCACGCTGATTGATCTCAATTTGGGGAAACTGTTTGTAGAGTCACCTCGTTGCAAGGAGAAATTGCAGATTGAACTCAAATCCAGCTCACTGGTCACTGAAAGAGATGAAATGGATATCCAAAATCATAG : ATATGAAGTCACAAGTTACAACAATGAGGTTGATATCTGGTTCAGCAGGGCGATTGATCGACCTTGCACTCTACTAAGAAATTCCGATTCCCAGAGTCACTCCTGCATAAATAAGAACGGGAGTCCTGGCATGTGCAGGGATGTTGGTGCTAGATTGAATTTTGTTAATGAAGCCCAATTTCTGCTGATATCTGAAGAAAGCATAAAGGACCTCAACTCTAGGCTGAAATCTA : ATGGACGAAGGAGAAATGGTGGACAAGCAGTACAAGTTGGTGTAATGAGATTTCGACCCAATCTTGTAGCATCTAGTGGTGAACCATATGCAGAAGATGGATGGAGCAATATAAATATTGGAGGCAAATATTTTATG</gDNA_template>
            <first_frame> D  C  R  S  C  C  T  A  F  P  H  I  Y  Y  C  L  S  N  K  V  L  C  G  I  *  C  G  S  V  A  S  N  I  Y  W :   V  I  A  *  S  *  M  D  S  Q  E  H  N  R  *  N  S  Y  P  K  E   : G  S  R  N  V  L  Y  L  H  A  D  *  S  Q  F  G  E  T  V  C  R  V  T  S  L  Q  G  E  I  A  D  *  T  Q  I  Q  L  T  G  H  *  K  R  *  N  G  Y  P  K  S  *  :  I  *  S  H  K  L  Q  Q  *  G  *  Y  L  V  Q  Q  G  D  *  S  T  L  H  S  T  K  K  F  R  F  P  E  S  L  L  H  K  *  E  R  E  S  W  H  V  Q  G  C  W  C  *  I  E  F  C  *  *  S  P  I  S  A  D  I  *  R  K  H  K  G  P  Q  L  *  A  E  I  * :   W  T  K  E  K  W  W  T  S  S  T  S  W  C  N  E  I  S  T  Q  S  C  S  I  *  W  *  T  I  C  R  R  W  M  E  Q  Y  K  Y  W  R  Q  I  F  Y  </first_frame>
            <second_frame>  I  A  E  A  A  A  R  H  F  L  T  S  I  T  V  Y  P  I  K  S  C  A  G  F  S  V  D  Q  W  P  L  T  S  T   : G  L  L  H  D  R  E  W  I  L  K  S  T  T  G  E  I  L  T  Q  K  K  :  V  P  E  M  C  Y  I  S  T  L  I  D  L  N  L  G  K  L  F  V  E  S  P  R  C  K  E  K  L  Q  I  E  L  K  S  S  S  L  V  T  E  R  D  E  M  D  I  Q  N  H  R :   Y  E  V  T  S  Y  N  N  E  V  D  I  W  F  S  R  A  I  D  R  P  C  T  L  L  R  N  S  D  S  Q  S  H  S  C  I  N  K  N  G  S  P  G  M  C  R  D  V  G  A  R  L  N  F  V  N  E  A  Q  F  L  L  I  S  E  E  S  I  K  D  L  N  S  R  L  K  S   : N  G  R  R  R  N  G  G  Q  A  V  Q  V  G  V  M  R  F  R  P  N  L  V  A  S  S  G  E  P  Y  A  E  D  G  W  S  N  I  N  I  G  G  K  Y  F  M </second_frame>
            <third_frame>   L  Q  K  L  L  H  G  I  S  S  H  L  L  L  S  I  Q  *  S  L  V  R  D  L  V  W  I  S  G  L  *  H  L  L  :  G  Y  C  M  I  V  N  G  F  S  R  A  Q  P  V  K  F  L  P  K  R  R :   F  Q  K  C  A  I  S  P  R  *  L  I  S  I  W  G  N  C  L  *  S  H  L  V  A  R  R  N  C  R  L  N  S  N  P  A  H  W  S  L  K  E  M  K  W  I  S  K  I  I   : D  M  K  S  Q  V  T  T  M  R  L  I  S  G  S  A  G  R  L  I  D  L  A  L  Y  *  E  I  P  I  P  R  V  T  P  A  *  I  R  T  G  V  L  A  C  A  G  M  L  V  L  D  *  I  L  L  M  K  P  N  F  C  *  Y  L  K  K  A  *  R  T  S  T  L  G  *  N  L  :  M  D  E  G  E  M  V  D  K  Q  Y  K  L  V  *  *  D  F  D  P  I  L  *  H  L  V  V  N  H  M  Q  K  M  D  G  A  I  *  I  L  E  A  N  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="393" stop="495"/>
                    <exon start="695" stop="759"/>
                    <exon start="1667" stop="1818"/>
                    <exon start="3455" stop="3687"/>
                    <exon start="4215" stop="4351"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>690</number_coding_nucleotides>
                  <number_encoded_amino_acids>230</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IAEAAARHFLTSITVYPIKSCAGFSVDQWPLTSTGLLHDREWILKSTTGEILTQKKVPEMCYISTLIDLNLGKLFVESPRCKEKLQIELKSSSLVTERDEMDIQNHRYEVTSYNNEVDIWFSRAIDRPCTLLRNSDSQSHSCINKNGSPGMCRDVGARLNFVNEAQFLLISEESIKDLNSRLKSNGRRRNGGQAVQVGVMRFRPNLVASSGEPYAEDGWSNINIGGKYFM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="4587" PGL_stop="5341"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4587" e_stop="4621"/>
            <exon e_start="4715" e_stop="5341"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.201" acc_prob="0.895" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4587" e_stop="4621" e_length="35"/>
          </exon>
          <intron i_serial="1" don_prob="0.201" acc_prob="0.895">
            <gDNA_intron_boundary i_start="4622" i_stop="4714" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="4715" e_stop="5341" e_length="627"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4587" stop="4621"/>
              <exon start="4715" stop="5341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354772" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTGGCAACTTTAGCAGGTTACAGGAGAGCAAAG : GGGAAAATAATGTTTGGCATACTGCTAAGATATGAGAATAATACGAAAACCGAGTCAGATACATGGATTCGTGTGGGAGAAGAAATAATTCCAAATGGAGATAGGCATTGATTGTTTTTCGTGGAAGTTCCTATTTGAGACTTGTAAGTAGTCACAACAGAGGTGATACAAGTGTTCAATATTGTGAAGCAGCGCAAAAAACACTTGCTCTAGCCAGGTCAATACATCAAACTGTACTTTGTTGCTGTTCTCTATCTGCAAAAGAGTATGTTCTTCTAAAAGAACTCGCTAAGATCTTCATTCTTTGTAACCAGTACTATTATAAGCTAATAAATACCCAATCGTAATATTAACTTCTTTGGGGCTGCGTATAGTTTTATGTGTAAGTTTTTAGTTTGTGTAGTGACTCGGTGTGCAAGTACAACCCATGGATGATGCAAAAATCCTCAGGACATCGCCATGATCTTATTAACAGTGCTTTCTCGAGAGTTGAGACCAAACGGGTGGAAAAGATAGTGAACGTTGAAAGCTTTATTCCTCTCAACTATGAAGGTTAATTATGAATGTACATGTTAATACTTAGCAATATTGGTGGAATAATATGTTTGTCATTTTGTTTTCACTCTT</gDNA_template>
            <first_frame> L  W  Q  L  *  Q  V  T  G  E  Q  R :   G  K  *  C  L  A  Y  C  *  D  M  R  I  I  R  K  P  S  Q  I  H  G  F  V  W  E  K  K  *  F  Q  M  E  I  G  I  D  C  F  S  W  K  F  L  F  E  T  C  K  *  S  Q  Q  R  *  Y  K  C  S  I  L  *  S  S  A  K  N  T  C  S  S  Q  V  N  T  S  N  C  T  L  L  L  F  S  I  C  K  R  V  C  S  S  K  R  T  R  *  D  L  H  S  L  *  P  V  L  L  *  A  N  K  Y  P  I  V  I  L  T  S  L  G  L  R  I  V  L  C  V  S  F  *  F  V  *  *  L  G  V  Q  V  Q  P  M  D  D  A  K  I  L  R  T  S  P  *  S  Y  *  Q  C  F  L  E  S  *  D  Q  T  G  G  K  D  S  E  R  *  K  L  Y  S  S  Q  L  *  R  L  I  M  N  V  H  V  N  T  *  Q  Y  W  W  N  N  M  F  V  I  L  F  S  L   </first_frame>
            <second_frame>  F  G  N  F  S  R  L  Q  E  S  K   : G  E  N  N  V  W  H  T  A  K  I  *  E  *  Y  E  N  R  V  R  Y  M  D  S  C  G  R  R  N  N  S  K  W  R  *  A  L  I  V  F  R  G  S  S  Y  L  R  L  V  S  S  H  N  R  G  D  T  S  V  Q  Y  C  E  A  A  Q  K  T  L  A  L  A  R  S  I  H  Q  T  V  L  C  C  C  S  L  S  A  K  E  Y  V  L  L  K  E  L  A  K  I  F  I  L  C  N  Q  Y  Y  Y  K  L  I  N  T  Q  S  *  Y  *  L  L  W  G  C  V  *  F  Y  V  *  V  F  S  L  C  S  D  S  V  C  K  Y  N  P  W  M  M  Q  K  S  S  G  H  R  H  D  L  I  N  S  A  F  S  R  V  E  T  K  R  V  E  K  I  V  N  V  E  S  F  I  P  L  N  Y  E  G  *  L  *  M  Y  M  L  I  L  S  N  I  G  G  I  I  C  L  S  F  C  F  H  S  </second_frame>
            <third_frame>   L  A  T  L  A  G  Y  R  R  A  K  :  G  K  I  M  F  G  I  L  L  R  Y  E  N  N  T  K  T  E  S  D  T  W  I  R  V  G  E  E  I  I  P  N  G  D  R  H  *  L  F  F  V  E  V  P  I  *  D  L  *  V  V  T  T  E  V  I  Q  V  F  N  I  V  K  Q  R  K  K  H  L  L  *  P  G  Q  Y  I  K  L  Y  F  V  A  V  L  Y  L  Q  K  S  M  F  F  *  K  N  S  L  R  S  S  F  F  V  T  S  T  I  I  S  *  *  I  P  N  R  N  I  N  F  F  G  A  A  Y  S  F  M  C  K  F  L  V  C  V  V  T  R  C  A  S  T  T  H  G  *  C  K  N  P  Q  D  I  A  M  I  L  L  T  V  L  S  R  E  L  R  P  N  G  W  K  R  *  *  T  L  K  A  L  F  L  S  T  M  K  V  N  Y  E  C  T  C  *  Y  L  A  I  L  V  E  *  Y  V  C  H  F  V  F  T  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4819" stop="5061"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALIVFRGSSYLRLVSSHNRGDTSVQYCEAAQKTLALARSIHQTVLCCCSLSAKEYVLLKELAKIFILCNQYYYKLINTQS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="7843" PGL_stop="11123"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7848" e_stop="8047"/>
            <exon e_start="9059" e_stop="9464"/>
            <exon e_start="10076" e_stop="10282"/>
            <exon e_start="10393" e_stop="10570"/>
            <exon e_start="10660" e_stop="11123"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.747" e_score="1.000"/>
          <exon-intron don_prob="0.888" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.775" e_score="1.000"/>
          <exon-intron don_prob="0.898" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7848" e_stop="8047" e_length="200"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.747">
            <gDNA_intron_boundary i_start="8048" i_stop="9058" i_length="1011"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9059" e_stop="9464" e_length="406"/>
          </exon>
          <intron i_serial="2" don_prob="0.888" acc_prob="0.999">
            <gDNA_intron_boundary i_start="9465" i_stop="10075" i_length="611"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="10076" e_stop="10282" e_length="207"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.775">
            <gDNA_intron_boundary i_start="10283" i_stop="10392" i_length="110"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="10393" e_stop="10570" e_length="178"/>
          </exon>
          <intron i_serial="4" don_prob="0.898" acc_prob="0.984">
            <gDNA_intron_boundary i_start="10571" i_stop="10659" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="10660" e_stop="11123" e_length="464"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7848" stop="8047"/>
              <exon start="9059" stop="9464"/>
              <exon start="10076" stop="10261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7849" stop="8047"/>
              <exon start="9059" stop="9296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7850" stop="8047"/>
              <exon start="9059" stop="9387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7851" stop="8047"/>
              <exon start="9059" stop="9464"/>
              <exon start="10076" stop="10162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7853" stop="8047"/>
              <exon start="9059" stop="9464"/>
              <exon start="10076" stop="10207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7858" stop="8047"/>
              <exon start="9059" stop="9464"/>
              <exon start="10076" stop="10175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7860" stop="8047"/>
              <exon start="9059" stop="9464"/>
              <exon start="10076" stop="10183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7860" stop="8047"/>
              <exon start="9059" stop="9464"/>
              <exon start="10076" stop="10151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7860" stop="8047"/>
              <exon start="9059" stop="9464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7860" stop="8047"/>
              <exon start="9059" stop="9340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7866" stop="8047"/>
              <exon start="9059" stop="9464"/>
              <exon start="10076" stop="10282"/>
              <exon start="10393" stop="10419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9089" stop="9464"/>
              <exon start="10076" stop="10204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9094" stop="9464"/>
              <exon start="10076" stop="10272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9119" stop="9464"/>
              <exon start="10076" stop="10282"/>
              <exon start="10393" stop="10551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9168" stop="9464"/>
              <exon start="10076" stop="10282"/>
              <exon start="10393" stop="10570"/>
              <exon start="10660" stop="10836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9168" stop="9464"/>
              <exon start="10076" stop="10282"/>
              <exon start="10393" stop="10570"/>
              <exon start="10660" stop="10794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9233" stop="9464"/>
              <exon start="10076" stop="10282"/>
              <exon start="10393" stop="10570"/>
              <exon start="10660" stop="10910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10100" stop="10282"/>
              <exon start="10393" stop="10570"/>
              <exon start="10660" stop="10958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10127" stop="10282"/>
              <exon start="10393" stop="10570"/>
              <exon start="10660" stop="11071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10135" stop="10282"/>
              <exon start="10393" stop="10570"/>
              <exon start="10660" stop="11044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373525" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10148" stop="10282"/>
              <exon start="10393" stop="10570"/>
              <exon start="10660" stop="11043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373354" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10415" stop="10570"/>
              <exon start="10660" stop="11007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217416" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10449" stop="10570"/>
              <exon start="10660" stop="11044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292050" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10484" stop="10570"/>
              <exon start="10660" stop="11068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10677" stop="11007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217327" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10707" stop="11007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215981" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10720" stop="11123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229840" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10798" stop="11123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230340" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10816" stop="11123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224369" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGGAAATGGAGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAG : CCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT : GTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATG : GCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAG : TTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAAGTTGTACTGGCGGATTTGGATTGTTTTTAATCACTGTGAGTAATTTGTGCAACTGTTGTAAGCTAACGAAAGAGTATTTCATCGTTGGCTTAATTTATGCAAGGGGTTTGGTCCAA</gDNA_template>
            <first_frame> S  E  M  E  K  F  V  A  L  N  A  S  N  L  S  S  G  S  L  L  P  I  G  F  S  S  P  C  R  K  S  A  L  S  L  Q  R  R  R  V  H  V  T  R  A  S  V  A  L  E  Q  Q  A  Q  T  K  V  A  V  I  R  V  G  T  R  G  S :   P  L  A  L  A  Q  A  Y  E  T  R  E  K  L  I  A  S  F  P  D  L  A  E  E  G  A  I  E  I  V  I  I  K  T  T  G  D  K  I  L  S  Q  P  L  A  D  I  G  G  K  G  L  F  T  K  E  I  D  E  A  L  I  N  G  D  I  D  I  A  V  H  S  M  K  D  V  P  T  Y  L  P  E  K  T  I  L  P  C  N  L  P  R  E  D  V  R  D  A  F  I  S  L  T  A  G  S  L  A  E  L  P  S  G  S  T  I  G  T  A  S  L  R  R  K  S  Q  I  L  H  R  Y  P  S  L  N  :  V  L  E  N  F  R  G  N  V  Q  T  R  L  K  K  L  N  E  G  V  V  Q  A  T  L  L  A  L  A  G  L  K  R  L  N  M  T  E  N  V  S  S  I  L  S  I  E  D  M  L  P  A  V  A  Q  G  A  I  G  I  A  C  R  S  D  D  E  T  M  :  A  N  Y  I  A  A  L  N  H  E  E  T  R  L  A  I  V  C  E  R  A  F  L  T  T  L  D  G  S  C  R  T  P  I  A  G  Y  A  C  R  G  E  D  G  D  C  I  F  K  G  L  V  A  S  P  D  G  T  R   : V  I  E  T  S  R  K  G  P  Y  T  S  E  D  M  I  R  M  G  E  D  A  G  Q  E  L  L  S  K  A  G  P  G  F  F  G  N  *  V  K  L  M  L  L  W  S  T  S  A  Y  E  K  C  R  D  V  S  N  N  R  D  R  D  R  N  F  I  F  H  P  Y  Y  R  I  M  S  L  L  I  L  V  T  V  S  A  I  E  F  E  Y  F  V  C  *  C  S  I  S  T  S  I  W  S  V  S  E  E  W  *  M  F  A  D  L  *  K  S  C  T  G  G  F  G  L  F  L  I  T  V  S  N  L  C  N  C  C  K  L  T  K  E  Y  F  I  V  G  L  I  Y  A  R  G  L  V  Q </first_frame>
            <second_frame>  R  K  W  R  N  S  S  L  *  M  L  Q  I  *  A  P  V  P  F  Y  Q  L  G  F  L  R  L  A  V  N  L  H  F  H  F  N  A  G  G  S  T  L  P  G  L  P  L  L  *  N  S  K  L  K  L  R  S  L  S  S  E  L  E  H  E  E   : A  P  *  L  L  P  K  L  M  R  L  E  K  S  *  *  P  R  F  L  T  W  L  K  R  E  P  L  R  *  *  *  *  K  P  Q  V  I  R  Y  *  V  S  L  L  Q  I  L  V  E  K  G  C  S  Q  K  K  *  T  K  P  S  S  M  A  I  L  I  L  L  S  T  Q  *  K  M  C  P  H  I  C  Q  R  R  L  S  Y  R  A  T  F  H  V  K  M  *  G  M  H  S  F  L  *  L  Q  V  P  W  L  N  F  H  Q  E  A  Q  L  V  L  L  H  *  G  E  S  P  R  F  S  T  A  I  P  H  S  M :   C  W  R  I  S  E  A  M  S  R  Q  G  *  R  N  *  M  R  E  *  F  K  L  H  Y  W  H  W  Q  G  L  S  V  *  I  *  Q  K  M  Y  H  R  S  F  L  *  R  I  C  Y  Q  L  L  L  R  V  P  L  V  L  P  A  E  V  M  T  R  Q  W :   P  T  T  L  L  L  *  I  M  K  K  P  D  *  Q  *  F  V  R  E  H  F  *  R  P  W  M  G  L  V  A  P  Q  L  L  A  M  P  V  E  V  K  M  E  I  V  F  L  K  D  *  L  P  L  Q  M  E  R  E  :  L  L  K  P  L  E  R  D  L  I  R  L  K  T  *  Y  G  W  V  K  M  L  A  R  N  Y  F  R  K  Q  V  Q  D  F  L  A  T  E  *  S  L  C  S  Y  G  R  P  L  P  M  K  N  A  E  M  Y  R  I  T  G  I  E  I  G  I  L  Y  F  T  P  T  I  G  L  *  V  Y  L  S  L  *  L  Y  R  Q  *  N  L  N  T  L  Y  V  S  V  A  F  P  L  Q  F  G  V  Y  P  R  N  G  E  C  L  Q  I  C  R  K  V  V  L  A  D  L  D  C  F  *  S  L  *  V  I  C  A  T  V  V  S  *  R  K  S  I  S  S  L  A  *  F  M  Q  G  V  W  S   </second_frame>
            <third_frame>   G  N  G  E  I  R  R  S  K  C  F  K  F  E  L  R  F  P  F  T  N  W  V  F  F  A  L  P  *  I  C  T  F  T  S  T  P  A  G  P  R  Y  Q  G  F  R  C  S  R  T  A  S  S  N  *  G  R  C  H  Q  S  W  N  T  R  K  :  P  P  S  S  C  P  S  L  *  D  S  R  K  A  N  S  L  V  S  *  P  G  *  R  G  S  H  *  D  S  N  N  K  N  H  R  *  *  D  I  K  S  A  S  C  R  Y  W  W  K  R  V  V  H  K  R  N  R  R  S  P  H  Q  W  R  Y  *  Y  C  C  P  L  N  E  R  C  A  H  I  S  A  R  E  D  Y  L  T  V  Q  P  S  T  *  R  C  E  G  C  I  H  F  F  N  C  R  F  P  G  *  T  S  I  R  K  H  N  W  Y  C  F  T  E  E  K  V  P  D  S  P  P  L  S  L  T  Q   : C  V  G  E  F  Q  R  Q  C  P  D  K  V  E  E  T  E  *  G  S  S  S  S  Y  I  I  G  T  G  R  A  *  A  S  E  Y  D  R  K  C  I  I  D  P  F  Y  R  G  Y  A  T  S  C  C  S  G  C  H  W  Y  C  L  Q  K  *  *  R  D  N   : G  Q  L  H  C  C  F  K  S  *  R  N  Q  I  S  N  S  L  *  E  S  I  F  D  D  L  G  W  V  L  S  H  P  N  C  W  L  C  L  S  R  *  R  W  R  L  Y  F  *  R  I  S  C  L  S  R  W  N  A  S :   Y  *  N  L  *  K  G  T  L  Y  V  *  R  H  D  T  D  G  *  R  C  W  P  G  T  T  F  E  S  R  S  R  I  F  W  Q  L  S  K  A  Y  A  L  M  V  D  L  C  L  *  K  M  Q  R  C  I  E  *  Q  G  *  R  S  E  F  Y  I  S  P  L  L  *  D  Y  E  S  T  Y  P  C  N  C  I  G  N  R  I  *  I  L  C  M  L  V  *  H  F  H  F  N  L  E  C  I  R  G  M  V  N  V  C  R  F  V  E  K  L  Y  W  R  I  W  I  V  F  N  H  C  E  *  F  V  Q  L  L  *  A  N  E  R  V  F  H  R  W  L  N  L  C  K  G  F  G  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7848" stop="8047"/>
                    <exon start="9059" stop="9464"/>
                    <exon start="10076" stop="10282"/>
                    <exon start="10393" stop="10570"/>
                    <exon start="10660" stop="10772"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1101</number_coding_nucleotides>
                  <number_encoded_amino_acids>367</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SEMEKFVALNASNLSSGSLLPIGFSSPCRKSALSLQRRRVHVTRASVALEQQAQTKVAVIRVGTRGSPLALAQAYETREKLIASFPDLAEEGAIEIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGDIDIAVHSMKDVPTYLPEKTILPCNLPREDVRDAFISLTAGSLAELPSGSTIGTASLRRKSQILHRYPSLNVLENFRGNVQTRLKKLNEGVVQATLLALAGLKRLNMTENVSSILSIEDMLPAVAQGAIGIACRSDDETMANYIAALNHEETRLAIVCERAFLTTLDGSCRTPIAGYACRGEDGDCIFKGLVASPDGTRVIETSRKGPYTSEDMIRMGEDAGQELLSKAGPGFFGN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="7848" e_stop="8047"/>
            <exon e_start="9059" e_stop="9464"/>
            <exon e_start="10076" e_stop="10282"/>
            <exon e_start="10393" e_stop="10418"/>
            <exon e_start="10660" e_stop="11123"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.747" e_score="1.000"/>
          <exon-intron don_prob="0.888" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.775" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7848" e_stop="8047" e_length="200"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.747">
            <gDNA_intron_boundary i_start="8048" i_stop="9058" i_length="1011"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9059" e_stop="9464" e_length="406"/>
          </exon>
          <intron i_serial="2" don_prob="0.888" acc_prob="0.999">
            <gDNA_intron_boundary i_start="9465" i_stop="10075" i_length="611"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="10076" e_stop="10282" e_length="207"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.775">
            <gDNA_intron_boundary i_start="10283" i_stop="10392" i_length="110"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="10393" e_stop="10418" e_length="26"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.984">
            <gDNA_intron_boundary i_start="10419" i_stop="10659" i_length="241"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="10660" e_stop="11123" e_length="464"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7848" stop="8047"/>
              <exon start="9059" stop="9464"/>
              <exon start="10076" stop="10261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7849" stop="8047"/>
              <exon start="9059" stop="9296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7850" stop="8047"/>
              <exon start="9059" stop="9387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7851" stop="8047"/>
              <exon start="9059" stop="9464"/>
              <exon start="10076" stop="10162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7853" stop="8047"/>
              <exon start="9059" stop="9464"/>
              <exon start="10076" stop="10207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7858" stop="8047"/>
              <exon start="9059" stop="9464"/>
              <exon start="10076" stop="10175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7860" stop="8047"/>
              <exon start="9059" stop="9464"/>
              <exon start="10076" stop="10183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7860" stop="8047"/>
              <exon start="9059" stop="9464"/>
              <exon start="10076" stop="10151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7860" stop="8047"/>
              <exon start="9059" stop="9464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7860" stop="8047"/>
              <exon start="9059" stop="9340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9089" stop="9464"/>
              <exon start="10076" stop="10204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9094" stop="9464"/>
              <exon start="10076" stop="10272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9255" stop="9464"/>
              <exon start="10076" stop="10282"/>
              <exon start="10393" stop="10418"/>
              <exon start="10660" stop="10964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9255" stop="9464"/>
              <exon start="10076" stop="10282"/>
              <exon start="10393" stop="10418"/>
              <exon start="10660" stop="10923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10677" stop="11007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217327" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10707" stop="11007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215981" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10720" stop="11123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229840" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10798" stop="11123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230340" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10816" stop="11123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224369" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGGAAATGGAGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAG : CCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT : GTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATG : GCCAACTACATTGCTGCTTTAAATCA : TTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAAGTTGTACTGGCGGATTTGGATTGTTTTTAATCACTGTGAGTAATTTGTGCAACTGTTGTAAGCTAACGAAAGAGTATTTCATCGTTGGCTTAATTTATGCAAGGGGTTTGGTCCAA</gDNA_template>
            <first_frame> S  E  M  E  K  F  V  A  L  N  A  S  N  L  S  S  G  S  L  L  P  I  G  F  S  S  P  C  R  K  S  A  L  S  L  Q  R  R  R  V  H  V  T  R  A  S  V  A  L  E  Q  Q  A  Q  T  K  V  A  V  I  R  V  G  T  R  G  S :   P  L  A  L  A  Q  A  Y  E  T  R  E  K  L  I  A  S  F  P  D  L  A  E  E  G  A  I  E  I  V  I  I  K  T  T  G  D  K  I  L  S  Q  P  L  A  D  I  G  G  K  G  L  F  T  K  E  I  D  E  A  L  I  N  G  D  I  D  I  A  V  H  S  M  K  D  V  P  T  Y  L  P  E  K  T  I  L  P  C  N  L  P  R  E  D  V  R  D  A  F  I  S  L  T  A  G  S  L  A  E  L  P  S  G  S  T  I  G  T  A  S  L  R  R  K  S  Q  I  L  H  R  Y  P  S  L  N  :  V  L  E  N  F  R  G  N  V  Q  T  R  L  K  K  L  N  E  G  V  V  Q  A  T  L  L  A  L  A  G  L  K  R  L  N  M  T  E  N  V  S  S  I  L  S  I  E  D  M  L  P  A  V  A  Q  G  A  I  G  I  A  C  R  S  D  D  E  T  M  :  A  N  Y  I  A  A  L  N  H :   Y  *  N  L  *  K  G  T  L  Y  V  *  R  H  D  T  D  G  *  R  C  W  P  G  T  T  F  E  S  R  S  R  I  F  W  Q  L  S  K  A  Y  A  L  M  V  D  L  C  L  *  K  M  Q  R  C  I  E  *  Q  G  *  R  S  E  F  Y  I  S  P  L  L  *  D  Y  E  S  T  Y  P  C  N  C  I  G  N  R  I  *  I  L  C  M  L  V  *  H  F  H  F  N  L  E  C  I  R  G  M  V  N  V  C  R  F  V  E  K  L  Y  W  R  I  W  I  V  F  N  H  C  E  *  F  V  Q  L  L  *  A  N  E  R  V  F  H  R  W  L  N  L  C  K  G  F  G  P  </first_frame>
            <second_frame>  R  K  W  R  N  S  S  L  *  M  L  Q  I  *  A  P  V  P  F  Y  Q  L  G  F  L  R  L  A  V  N  L  H  F  H  F  N  A  G  G  S  T  L  P  G  L  P  L  L  *  N  S  K  L  K  L  R  S  L  S  S  E  L  E  H  E  E   : A  P  *  L  L  P  K  L  M  R  L  E  K  S  *  *  P  R  F  L  T  W  L  K  R  E  P  L  R  *  *  *  *  K  P  Q  V  I  R  Y  *  V  S  L  L  Q  I  L  V  E  K  G  C  S  Q  K  K  *  T  K  P  S  S  M  A  I  L  I  L  L  S  T  Q  *  K  M  C  P  H  I  C  Q  R  R  L  S  Y  R  A  T  F  H  V  K  M  *  G  M  H  S  F  L  *  L  Q  V  P  W  L  N  F  H  Q  E  A  Q  L  V  L  L  H  *  G  E  S  P  R  F  S  T  A  I  P  H  S  M :   C  W  R  I  S  E  A  M  S  R  Q  G  *  R  N  *  M  R  E  *  F  K  L  H  Y  W  H  W  Q  G  L  S  V  *  I  *  Q  K  M  Y  H  R  S  F  L  *  R  I  C  Y  Q  L  L  L  R  V  P  L  V  L  P  A  E  V  M  T  R  Q  W :   P  T  T  L  L  L  *  I   : I  I  E  T  S  R  K  G  P  Y  T  S  E  D  M  I  R  M  G  E  D  A  G  Q  E  L  L  S  K  A  G  P  G  F  F  G  N  *  V  K  L  M  L  L  W  S  T  S  A  Y  E  K  C  R  D  V  S  N  N  R  D  R  D  R  N  F  I  F  H  P  Y  Y  R  I  M  S  L  L  I  L  V  T  V  S  A  I  E  F  E  Y  F  V  C  *  C  S  I  S  T  S  I  W  S  V  S  E  E  W  *  M  F  A  D  L  *  K  S  C  T  G  G  F  G  L  F  L  I  T  V  S  N  L  C  N  C  C  K  L  T  K  E  Y  F  I  V  G  L  I  Y  A  R  G  L  V  Q </second_frame>
            <third_frame>   G  N  G  E  I  R  R  S  K  C  F  K  F  E  L  R  F  P  F  T  N  W  V  F  F  A  L  P  *  I  C  T  F  T  S  T  P  A  G  P  R  Y  Q  G  F  R  C  S  R  T  A  S  S  N  *  G  R  C  H  Q  S  W  N  T  R  K  :  P  P  S  S  C  P  S  L  *  D  S  R  K  A  N  S  L  V  S  *  P  G  *  R  G  S  H  *  D  S  N  N  K  N  H  R  *  *  D  I  K  S  A  S  C  R  Y  W  W  K  R  V  V  H  K  R  N  R  R  S  P  H  Q  W  R  Y  *  Y  C  C  P  L  N  E  R  C  A  H  I  S  A  R  E  D  Y  L  T  V  Q  P  S  T  *  R  C  E  G  C  I  H  F  F  N  C  R  F  P  G  *  T  S  I  R  K  H  N  W  Y  C  F  T  E  E  K  V  P  D  S  P  P  L  S  L  T  Q   : C  V  G  E  F  Q  R  Q  C  P  D  K  V  E  E  T  E  *  G  S  S  S  S  Y  I  I  G  T  G  R  A  *  A  S  E  Y  D  R  K  C  I  I  D  P  F  Y  R  G  Y  A  T  S  C  C  S  G  C  H  W  Y  C  L  Q  K  *  *  R  D  N   : G  Q  L  H  C  C  F  K  S  :  L  L  K  P  L  E  R  D  L  I  R  L  K  T  *  Y  G  W  V  K  M  L  A  R  N  Y  F  R  K  Q  V  Q  D  F  L  A  T  E  *  S  L  C  S  Y  G  R  P  L  P  M  K  N  A  E  M  Y  R  I  T  G  I  E  I  G  I  L  Y  F  T  P  T  I  G  L  *  V  Y  L  S  L  *  L  Y  R  Q  *  N  L  N  T  L  Y  V  S  V  A  F  P  L  Q  F  G  V  Y  P  R  N  G  E  C  L  Q  I  C  R  K  V  V  L  A  D  L  D  C  F  *  S  L  *  V  I  C  A  T  V  V  S  *  R  K  S  I  S  S  L  A  *  F  M  Q  G  V  W  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7848" stop="8047"/>
                    <exon start="9059" stop="9464"/>
                    <exon start="10076" stop="10282"/>
                    <exon start="10393" stop="10418"/>
                    <exon start="10660" stop="10666"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>843</number_coding_nucleotides>
                  <number_encoded_amino_acids>281</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SEMEKFVALNASNLSSGSLLPIGFSSPCRKSALSLQRRRVHVTRASVALEQQAQTKVAVIRVGTRGSPLALAQAYETREKLIASFPDLAEEGAIEIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGDIDIAVHSMKDVPTYLPEKTILPCNLPREDVRDAFISLTAGSLAELPSGSTIGTASLRRKSQILHRYPSLNVLENFRGNVQTRLKKLNEGVVQATLLALAGLKRLNMTENVSSILSIEDMLPAVAQGAIGIACRSDDETMANYIAALNHY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="7843" e_stop="8047"/>
            <exon e_start="9054" e_stop="9464"/>
            <exon e_start="10076" e_stop="10282"/>
            <exon e_start="10393" e_stop="10570"/>
            <exon e_start="10660" e_stop="11123"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.996" e_score="0.985"/>
          <exon-intron don_prob="0.888" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.775" e_score="1.000"/>
          <exon-intron don_prob="0.898" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="7843" e_stop="8047" e_length="205"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.996">
            <gDNA_intron_boundary i_start="8048" i_stop="9053" i_length="1006"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9054" e_stop="9464" e_length="411"/>
          </exon>
          <intron i_serial="2" don_prob="0.888" acc_prob="0.999">
            <gDNA_intron_boundary i_start="9465" i_stop="10075" i_length="611"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="10076" e_stop="10282" e_length="207"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.775">
            <gDNA_intron_boundary i_start="10283" i_stop="10392" i_length="110"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="10393" e_stop="10570" e_length="178"/>
          </exon>
          <intron i_serial="4" don_prob="0.898" acc_prob="0.984">
            <gDNA_intron_boundary i_start="10571" i_stop="10659" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="10660" e_stop="11123" e_length="464"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7843" stop="8047"/>
              <exon start="9054" stop="9464"/>
              <exon start="10076" stop="10178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9089" stop="9464"/>
              <exon start="10076" stop="10204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9094" stop="9464"/>
              <exon start="10076" stop="10272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9119" stop="9464"/>
              <exon start="10076" stop="10282"/>
              <exon start="10393" stop="10551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9168" stop="9464"/>
              <exon start="10076" stop="10282"/>
              <exon start="10393" stop="10570"/>
              <exon start="10660" stop="10836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9168" stop="9464"/>
              <exon start="10076" stop="10282"/>
              <exon start="10393" stop="10570"/>
              <exon start="10660" stop="10794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9233" stop="9464"/>
              <exon start="10076" stop="10282"/>
              <exon start="10393" stop="10570"/>
              <exon start="10660" stop="10910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10100" stop="10282"/>
              <exon start="10393" stop="10570"/>
              <exon start="10660" stop="10958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10127" stop="10282"/>
              <exon start="10393" stop="10570"/>
              <exon start="10660" stop="11071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10135" stop="10282"/>
              <exon start="10393" stop="10570"/>
              <exon start="10660" stop="11044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373525" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10148" stop="10282"/>
              <exon start="10393" stop="10570"/>
              <exon start="10660" stop="11043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373354" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10415" stop="10570"/>
              <exon start="10660" stop="11007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217416" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10449" stop="10570"/>
              <exon start="10660" stop="11044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292050" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10484" stop="10570"/>
              <exon start="10660" stop="11068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10677" stop="11007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217327" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10707" stop="11007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215981" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10720" stop="11123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229840" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10798" stop="11123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230340" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10816" stop="11123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224369" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCCTTCGGAAATGGAGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAG : GACAGCCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT : GTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATG : GCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAG : TTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAAGTTGTACTGGCGGATTTGGATTGTTTTTAATCACTGTGAGTAATTTGTGCAACTGTTGTAAGCTAACGAAAGAGTATTTCATCGTTGGCTTAATTTATGCAAGGGGTTTGGTCCAA</gDNA_template>
            <first_frame> F  L  R  K  W  R  N  S  S  L  *  M  L  Q  I  *  A  P  V  P  F  Y  Q  L  G  F  L  R  L  A  V  N  L  H  F  H  F  N  A  G  G  S  T  L  P  G  L  P  L  L  *  N  S  K  L  K  L  R  S  L  S  S  E  L  E  H  E  E   : G  Q  P  P  S  S  C  P  S  L  *  D  S  R  K  A  N  S  L  V  S  *  P  G  *  R  G  S  H  *  D  S  N  N  K  N  H  R  *  *  D  I  K  S  A  S  C  R  Y  W  W  K  R  V  V  H  K  R  N  R  R  S  P  H  Q  W  R  Y  *  Y  C  C  P  L  N  E  R  C  A  H  I  S  A  R  E  D  Y  L  T  V  Q  P  S  T  *  R  C  E  G  C  I  H  F  F  N  C  R  F  P  G  *  T  S  I  R  K  H  N  W  Y  C  F  T  E  E  K  V  P  D  S  P  P  L  S  L  T  Q   : C  V  G  E  F  Q  R  Q  C  P  D  K  V  E  E  T  E  *  G  S  S  S  S  Y  I  I  G  T  G  R  A  *  A  S  E  Y  D  R  K  C  I  I  D  P  F  Y  R  G  Y  A  T  S  C  C  S  G  C  H  W  Y  C  L  Q  K  *  *  R  D  N   : G  Q  L  H  C  C  F  K  S  *  R  N  Q  I  S  N  S  L  *  E  S  I  F  D  D  L  G  W  V  L  S  H  P  N  C  W  L  C  L  S  R  *  R  W  R  L  Y  F  *  R  I  S  C  L  S  R  W  N  A  S :   Y  *  N  L  *  K  G  T  L  Y  V  *  R  H  D  T  D  G  *  R  C  W  P  G  T  T  F  E  S  R  S  R  I  F  W  Q  L  S  K  A  Y  A  L  M  V  D  L  C  L  *  K  M  Q  R  C  I  E  *  Q  G  *  R  S  E  F  Y  I  S  P  L  L  *  D  Y  E  S  T  Y  P  C  N  C  I  G  N  R  I  *  I  L  C  M  L  V  *  H  F  H  F  N  L  E  C  I  R  G  M  V  N  V  C  R  F  V  E  K  L  Y  W  R  I  W  I  V  F  N  H  C  E  *  F  V  Q  L  L  *  A  N  E  R  V  F  H  R  W  L  N  L  C  K  G  F  G  P  </first_frame>
            <second_frame>  S  F  G  N  G  E  I  R  R  S  K  C  F  K  F  E  L  R  F  P  F  T  N  W  V  F  F  A  L  P  *  I  C  T  F  T  S  T  P  A  G  P  R  Y  Q  G  F  R  C  S  R  T  A  S  S  N  *  G  R  C  H  Q  S  W  N  T  R  K  :  D  S  P  L  A  L  A  Q  A  Y  E  T  R  E  K  L  I  A  S  F  P  D  L  A  E  E  G  A  I  E  I  V  I  I  K  T  T  G  D  K  I  L  S  Q  P  L  A  D  I  G  G  K  G  L  F  T  K  E  I  D  E  A  L  I  N  G  D  I  D  I  A  V  H  S  M  K  D  V  P  T  Y  L  P  E  K  T  I  L  P  C  N  L  P  R  E  D  V  R  D  A  F  I  S  L  T  A  G  S  L  A  E  L  P  S  G  S  T  I  G  T  A  S  L  R  R  K  S  Q  I  L  H  R  Y  P  S  L  N  :  V  L  E  N  F  R  G  N  V  Q  T  R  L  K  K  L  N  E  G  V  V  Q  A  T  L  L  A  L  A  G  L  K  R  L  N  M  T  E  N  V  S  S  I  L  S  I  E  D  M  L  P  A  V  A  Q  G  A  I  G  I  A  C  R  S  D  D  E  T  M  :  A  N  Y  I  A  A  L  N  H  E  E  T  R  L  A  I  V  C  E  R  A  F  L  T  T  L  D  G  S  C  R  T  P  I  A  G  Y  A  C  R  G  E  D  G  D  C  I  F  K  G  L  V  A  S  P  D  G  T  R   : V  I  E  T  S  R  K  G  P  Y  T  S  E  D  M  I  R  M  G  E  D  A  G  Q  E  L  L  S  K  A  G  P  G  F  F  G  N  *  V  K  L  M  L  L  W  S  T  S  A  Y  E  K  C  R  D  V  S  N  N  R  D  R  D  R  N  F  I  F  H  P  Y  Y  R  I  M  S  L  L  I  L  V  T  V  S  A  I  E  F  E  Y  F  V  C  *  C  S  I  S  T  S  I  W  S  V  S  E  E  W  *  M  F  A  D  L  *  K  S  C  T  G  G  F  G  L  F  L  I  T  V  S  N  L  C  N  C  C  K  L  T  K  E  Y  F  I  V  G  L  I  Y  A  R  G  L  V  Q </second_frame>
            <third_frame>   P  S  E  M  E  K  F  V  A  L  N  A  S  N  L  S  S  G  S  L  L  P  I  G  F  S  S  P  C  R  K  S  A  L  S  L  Q  R  R  R  V  H  V  T  R  A  S  V  A  L  E  Q  Q  A  Q  T  K  V  A  V  I  R  V  G  T  R  G  R :   T  A  P  *  L  L  P  K  L  M  R  L  E  K  S  *  *  P  R  F  L  T  W  L  K  R  E  P  L  R  *  *  *  *  K  P  Q  V  I  R  Y  *  V  S  L  L  Q  I  L  V  E  K  G  C  S  Q  K  K  *  T  K  P  S  S  M  A  I  L  I  L  L  S  T  Q  *  K  M  C  P  H  I  C  Q  R  R  L  S  Y  R  A  T  F  H  V  K  M  *  G  M  H  S  F  L  *  L  Q  V  P  W  L  N  F  H  Q  E  A  Q  L  V  L  L  H  *  G  E  S  P  R  F  S  T  A  I  P  H  S  M :   C  W  R  I  S  E  A  M  S  R  Q  G  *  R  N  *  M  R  E  *  F  K  L  H  Y  W  H  W  Q  G  L  S  V  *  I  *  Q  K  M  Y  H  R  S  F  L  *  R  I  C  Y  Q  L  L  L  R  V  P  L  V  L  P  A  E  V  M  T  R  Q  W :   P  T  T  L  L  L  *  I  M  K  K  P  D  *  Q  *  F  V  R  E  H  F  *  R  P  W  M  G  L  V  A  P  Q  L  L  A  M  P  V  E  V  K  M  E  I  V  F  L  K  D  *  L  P  L  Q  M  E  R  E  :  L  L  K  P  L  E  R  D  L  I  R  L  K  T  *  Y  G  W  V  K  M  L  A  R  N  Y  F  R  K  Q  V  Q  D  F  L  A  T  E  *  S  L  C  S  Y  G  R  P  L  P  M  K  N  A  E  M  Y  R  I  T  G  I  E  I  G  I  L  Y  F  T  P  T  I  G  L  *  V  Y  L  S  L  *  L  Y  R  Q  *  N  L  N  T  L  Y  V  S  V  A  F  P  L  Q  F  G  V  Y  P  R  N  G  E  C  L  Q  I  C  R  K  V  V  L  A  D  L  D  C  F  *  S  L  *  V  I  C  A  T  V  V  S  *  R  K  S  I  S  S  L  A  *  F  M  Q  G  V  W  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8015" stop="8047"/>
                    <exon start="9054" stop="9464"/>
                    <exon start="10076" stop="10282"/>
                    <exon start="10393" stop="10570"/>
                    <exon start="10660" stop="10772"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>939</number_coding_nucleotides>
                  <number_encoded_amino_acids>313</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GRCHQSWNTRKDSPLALAQAYETREKLIASFPDLAEEGAIEIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGDIDIAVHSMKDVPTYLPEKTILPCNLPREDVRDAFISLTAGSLAELPSGSTIGTASLRRKSQILHRYPSLNVLENFRGNVQTRLKKLNEGVVQATLLALAGLKRLNMTENVSSILSIEDMLPAVAQGAIGIACRSDDETMANYIAALNHEETRLAIVCERAFLTTLDGSCRTPIAGYACRGEDGDCIFKGLVASPDGTRVIETSRKGPYTSEDMIRMGEDAGQELLSKAGPGFFGN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="7849" e_stop="8047"/>
            <exon e_start="9059" e_stop="9339"/>
            <exon e_start="10118" e_stop="10282"/>
            <exon e_start="10393" e_stop="10570"/>
            <exon e_start="10660" e_stop="11123"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.747" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.775" e_score="1.000"/>
          <exon-intron don_prob="0.898" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7849" e_stop="8047" e_length="199"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.747">
            <gDNA_intron_boundary i_start="8048" i_stop="9058" i_length="1011"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9059" e_stop="9339" e_length="281"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="9340" i_stop="10117" i_length="778"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="10118" e_stop="10282" e_length="165"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.775">
            <gDNA_intron_boundary i_start="10283" i_stop="10392" i_length="110"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="10393" e_stop="10570" e_length="178"/>
          </exon>
          <intron i_serial="4" don_prob="0.898" acc_prob="0.984">
            <gDNA_intron_boundary i_start="10571" i_stop="10659" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="10660" e_stop="11123" e_length="464"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7849" stop="8047"/>
              <exon start="9059" stop="9296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7857" stop="8047"/>
              <exon start="9059" stop="9339"/>
              <exon start="10118" stop="10282"/>
              <exon start="10393" stop="10570"/>
              <exon start="10660" stop="10727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10127" stop="10282"/>
              <exon start="10393" stop="10570"/>
              <exon start="10660" stop="11071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10135" stop="10282"/>
              <exon start="10393" stop="10570"/>
              <exon start="10660" stop="11044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373525" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10148" stop="10282"/>
              <exon start="10393" stop="10570"/>
              <exon start="10660" stop="11043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373354" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10415" stop="10570"/>
              <exon start="10660" stop="11007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217416" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10449" stop="10570"/>
              <exon start="10660" stop="11044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292050" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10484" stop="10570"/>
              <exon start="10660" stop="11068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10677" stop="11007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217327" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10707" stop="11007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215981" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10720" stop="11123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229840" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10798" stop="11123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230340" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10816" stop="11123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224369" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGGAAATGGAGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAG : CCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAG : AAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATG : GCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAG : TTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAAGTTGTACTGGCGGATTTGGATTGTTTTTAATCACTGTGAGTAATTTGTGCAACTGTTGTAAGCTAACGAAAGAGTATTTCATCGTTGGCTTAATTTATGCAAGGGGTTTGGTCCAA</gDNA_template>
            <first_frame> R  K  W  R  N  S  S  L  *  M  L  Q  I  *  A  P  V  P  F  Y  Q  L  G  F  L  R  L  A  V  N  L  H  F  H  F  N  A  G  G  S  T  L  P  G  L  P  L  L  *  N  S  K  L  K  L  R  S  L  S  S  E  L  E  H  E  E   : A  P  *  L  L  P  K  L  M  R  L  E  K  S  *  *  P  R  F  L  T  W  L  K  R  E  P  L  R  *  *  *  *  K  P  Q  V  I  R  Y  *  V  S  L  L  Q  I  L  V  E  K  G  C  S  Q  K  K  *  T  K  P  S  S  M  A  I  L  I  L  L  S  T  Q  *  K  M  C  P  H  I  C  Q  R  R  L  S  Y  R  A  T  F  H  V  K  :  K  L  N  E  G  V  V  Q  A  T  L  L  A  L  A  G  L  K  R  L  N  M  T  E  N  V  S  S  I  L  S  I  E  D  M  L  P  A  V  A  Q  G  A  I  G  I  A  C  R  S  D  D  E  T  M  :  A  N  Y  I  A  A  L  N  H  E  E  T  R  L  A  I  V  C  E  R  A  F  L  T  T  L  D  G  S  C  R  T  P  I  A  G  Y  A  C  R  G  E  D  G  D  C  I  F  K  G  L  V  A  S  P  D  G  T  R   : V  I  E  T  S  R  K  G  P  Y  T  S  E  D  M  I  R  M  G  E  D  A  G  Q  E  L  L  S  K  A  G  P  G  F  F  G  N  *  V  K  L  M  L  L  W  S  T  S  A  Y  E  K  C  R  D  V  S  N  N  R  D  R  D  R  N  F  I  F  H  P  Y  Y  R  I  M  S  L  L  I  L  V  T  V  S  A  I  E  F  E  Y  F  V  C  *  C  S  I  S  T  S  I  W  S  V  S  E  E  W  *  M  F  A  D  L  *  K  S  C  T  G  G  F  G  L  F  L  I  T  V  S  N  L  C  N  C  C  K  L  T  K  E  Y  F  I  V  G  L  I  Y  A  R  G  L  V  Q </first_frame>
            <second_frame>  G  N  G  E  I  R  R  S  K  C  F  K  F  E  L  R  F  P  F  T  N  W  V  F  F  A  L  P  *  I  C  T  F  T  S  T  P  A  G  P  R  Y  Q  G  F  R  C  S  R  T  A  S  S  N  *  G  R  C  H  Q  S  W  N  T  R  K  :  P  P  S  S  C  P  S  L  *  D  S  R  K  A  N  S  L  V  S  *  P  G  *  R  G  S  H  *  D  S  N  N  K  N  H  R  *  *  D  I  K  S  A  S  C  R  Y  W  W  K  R  V  V  H  K  R  N  R  R  S  P  H  Q  W  R  Y  *  Y  C  C  P  L  N  E  R  C  A  H  I  S  A  R  E  D  Y  L  T  V  Q  P  S  T  *  R :   N  *  M  R  E  *  F  K  L  H  Y  W  H  W  Q  G  L  S  V  *  I  *  Q  K  M  Y  H  R  S  F  L  *  R  I  C  Y  Q  L  L  L  R  V  P  L  V  L  P  A  E  V  M  T  R  Q  W :   P  T  T  L  L  L  *  I  M  K  K  P  D  *  Q  *  F  V  R  E  H  F  *  R  P  W  M  G  L  V  A  P  Q  L  L  A  M  P  V  E  V  K  M  E  I  V  F  L  K  D  *  L  P  L  Q  M  E  R  E  :  L  L  K  P  L  E  R  D  L  I  R  L  K  T  *  Y  G  W  V  K  M  L  A  R  N  Y  F  R  K  Q  V  Q  D  F  L  A  T  E  *  S  L  C  S  Y  G  R  P  L  P  M  K  N  A  E  M  Y  R  I  T  G  I  E  I  G  I  L  Y  F  T  P  T  I  G  L  *  V  Y  L  S  L  *  L  Y  R  Q  *  N  L  N  T  L  Y  V  S  V  A  F  P  L  Q  F  G  V  Y  P  R  N  G  E  C  L  Q  I  C  R  K  V  V  L  A  D  L  D  C  F  *  S  L  *  V  I  C  A  T  V  V  S  *  R  K  S  I  S  S  L  A  *  F  M  Q  G  V  W  S   </second_frame>
            <third_frame>   E  M  E  K  F  V  A  L  N  A  S  N  L  S  S  G  S  L  L  P  I  G  F  S  S  P  C  R  K  S  A  L  S  L  Q  R  R  R  V  H  V  T  R  A  S  V  A  L  E  Q  Q  A  Q  T  K  V  A  V  I  R  V  G  T  R  G  S :   P  L  A  L  A  Q  A  Y  E  T  R  E  K  L  I  A  S  F  P  D  L  A  E  E  G  A  I  E  I  V  I  I  K  T  T  G  D  K  I  L  S  Q  P  L  A  D  I  G  G  K  G  L  F  T  K  E  I  D  E  A  L  I  N  G  D  I  D  I  A  V  H  S  M  K  D  V  P  T  Y  L  P  E  K  T  I  L  P  C  N  L  P  R  E   : E  T  E  *  G  S  S  S  S  Y  I  I  G  T  G  R  A  *  A  S  E  Y  D  R  K  C  I  I  D  P  F  Y  R  G  Y  A  T  S  C  C  S  G  C  H  W  Y  C  L  Q  K  *  *  R  D  N   : G  Q  L  H  C  C  F  K  S  *  R  N  Q  I  S  N  S  L  *  E  S  I  F  D  D  L  G  W  V  L  S  H  P  N  C  W  L  C  L  S  R  *  R  W  R  L  Y  F  *  R  I  S  C  L  S  R  W  N  A  S :   Y  *  N  L  *  K  G  T  L  Y  V  *  R  H  D  T  D  G  *  R  C  W  P  G  T  T  F  E  S  R  S  R  I  F  W  Q  L  S  K  A  Y  A  L  M  V  D  L  C  L  *  K  M  Q  R  C  I  E  *  Q  G  *  R  S  E  F  Y  I  S  P  L  L  *  D  Y  E  S  T  Y  P  C  N  C  I  G  N  R  I  *  I  L  C  M  L  V  *  H  F  H  F  N  L  E  C  I  R  G  M  V  N  V  C  R  F  V  E  K  L  Y  W  R  I  W  I  V  F  N  H  C  E  *  F  V  Q  L  L  *  A  N  E  R  V  F  H  R  W  L  N  L  C  K  G  F  G  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9280" stop="9339"/>
                    <exon start="10118" stop="10282"/>
                    <exon start="10393" stop="10570"/>
                    <exon start="10660" stop="10772"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMCPHICQRRLSYRATFHVKKLNEGVVQATLLALAGLKRLNMTENVSSILSIEDMLPAVAQGAIGIACRSDDETMANYIAALNHEETRLAIVCERAFLTTLDGSCRTPIAGYACRGEDGDCIFKGLVASPDGTRVIETSRKGPYTSEDMIRMGEDAGQELLSKAGPGFFGN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7851" stop="8047"/>
                    <exon start="9059" stop="9339"/>
                    <exon start="10118" stop="10128"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>486</number_coding_nucleotides>
                  <number_encoded_amino_acids>162</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMEKFVALNASNLSSGSLLPIGFSSPCRKSALSLQRRRVHVTRASVALEQQAQTKVAVIRVGTRGSPLALAQAYETREKLIASFPDLAEEGAIEIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGDIDIAVHSMKDVPTYLPEKTILPCNLPREETE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="11421" PGL_stop="10774"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11421" e_stop="11416"/>
            <exon e_start="11119" e_stop="10774"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.356" acc_prob="0.000" e_score="0.833"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.833">
            <gDNA_exon_boundary e_start="11421" e_stop="11416" e_length="6"/>
          </exon>
          <intron i_serial="1" don_prob="0.356" acc_prob="0.000">
            <gDNA_intron_boundary i_start="11415" i_stop="11120" i_length="296"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="11119" e_stop="10774" e_length="346"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11421" stop="11416"/>
              <exon start="11119" stop="10774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224869" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTACAG : ACCAAACCCCTTGCATAAATTAAGCCAACGATGAAATACTCTTTCGTTAGCTTACAACAGTTGCACAAATTACTCACAGTGATTAAAAACAATCCAAATCCGCCAGTACAACTTTTCTACAAATCTGCAAACATTCACCATTCCTCGGATACACTCCAAATTGAAGTGGAAATGCTACACTAACATACAAAGTATTCAAATTCTATTGCCGATACAGTTACAAGGATAAGTAGACTCATAATCCTATAGTAGGGGTGAAATATAAAATTCCGATCTCTATCCCTGTTATTCGATACATCTCTGCATTTTTCATAGGCAGAGGTCGACCATAAGAGCATAAGCTTTA</gDNA_template>
            <first_frame> L  Q  :  T  K  P  L  A  *  I  K  P  T  M  K  Y  S  F  V  S  L  Q  Q  L  H  K  L  L  T  V  I  K  N  N  P  N  P  P  V  Q  L  F  Y  K  S  A  N  I  H  H  S  S  D  T  L  Q  I  E  V  E  M  L  H  *  H  T  K  Y  S  N  S  I  A  D  T  V  T  R  I  S  R  L  I  I  L  *  *  G  *  N  I  K  F  R  S  L  S  L  L  F  D  T  S  L  H  F  S  *  A  E  V  D  H  K  S  I  S  F  </first_frame>
            <second_frame>  Y  R :   P  N  P  L  H  K  L  S  Q  R  *  N  T  L  S  L  A  Y  N  S  C  T  N  Y  S  Q  *  L  K  T  I  Q  I  R  Q  Y  N  F  S  T  N  L  Q  T  F  T  I  P  R  I  H  S  K  L  K  W  K  C  Y  T  N  I  Q  S  I  Q  I  L  L  P  I  Q  L  Q  G  *  V  D  S  *  S  Y  S  R  G  E  I  *  N  S  D  L  Y  P  C  Y  S  I  H  L  C  I  F  H  R  Q  R  S  T  I  R  A  *  A  L </second_frame>
            <third_frame>   T   : D  Q  T  P  C  I  N  *  A  N  D  E  I  L  F  R  *  L  T  T  V  A  Q  I  T  H  S  D  *  K  Q  S  K  S  A  S  T  T  F  L  Q  I  C  K  H  S  P  F  L  G  Y  T  P  N  *  S  G  N  A  T  L  T  Y  K  V  F  K  F  Y  C  R  Y  S  Y  K  D  K  *  T  H  N  P  I  V  G  V  K  Y  K  I  P  I  S  I  P  V  I  R  Y  I  S  A  F  F  I  G  R  G  R  P  *  E  H  K  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0215P04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="11690" PGL_stop="15391"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11690" e_stop="11971"/>
            <exon e_start="12914" e_stop="13040"/>
            <exon e_start="13892" e_stop="14030"/>
            <exon e_start="14167" e_stop="14255"/>
            <exon e_start="14933" e_stop="15391"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.363" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.936" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11690" e_stop="11971" e_length="282"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="11972" i_stop="12913" i_length="942"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12914" e_stop="13040" e_length="127"/>
          </exon>
          <intron i_serial="2" don_prob="0.363" acc_prob="0.995">
            <gDNA_intron_boundary i_start="13041" i_stop="13891" i_length="851"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13892" e_stop="14030" e_length="139"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.978">
            <gDNA_intron_boundary i_start="14031" i_stop="14166" i_length="136"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="14167" e_stop="14255" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.936">
            <gDNA_intron_boundary i_start="14256" i_stop="14932" i_length="677"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="14933" e_stop="15391" e_length="459"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11690" stop="11971"/>
              <exon start="12914" stop="13040"/>
              <exon start="13892" stop="14030"/>
              <exon start="14167" stop="14255"/>
              <exon start="14933" stop="15028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11713" stop="11971"/>
              <exon start="12914" stop="13040"/>
              <exon start="13892" stop="14030"/>
              <exon start="14167" stop="14255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11713" stop="11971"/>
              <exon start="12914" stop="13040"/>
              <exon start="13892" stop="13964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11890" stop="11971"/>
              <exon start="12914" stop="13040"/>
              <exon start="13892" stop="14030"/>
              <exon start="14167" stop="14255"/>
              <exon start="14933" stop="15391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732417" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAACTGAGTTTCCCCATACAATCCTCTCTTGTGCAGTATCTTCTAAAGTTGAAATCTCGTATAGAAAAATGAAAGTACACTCCTGCATTCATCCTCTTCCCTCTACTCCCTCCACCGGAATTTTGGTCTCTGCCGGTCCTGCGGAAGCTAAGCTTGCTGCTAACACCAGAAAGCTTTATTCTTTAACTTTGAATTCCTCTAATTATGTCCCATTTCCTTATAAAGATCAGAAATTTTCCAGAAGCAGCTCTACGGATTTTTCTAGAACGGCTATCGGTTCG : AATGTAAGTGAAGATACAGATGACATGTTTGATGATCTCCTAAGAACGCATGGCAAAGTGGTATACAAAAGAAATGACCAAAAACCTGCAAGTGAGGAGATTGATGATGATGCTGAAAGCCTATCGT : TTGCAATGGCTGTGGCTAAAGTTGCAAGTGATGTCAAGGCTGGAGATATAAAGGTCCTCTTTGTCAAGCCTCTAGTATATTGGACTCGGTTTTTCATTATTGCTACTGCATTCTCTCGCCCACAGATTGATGCCATTGG : GACCAGAGTAAGAGATATGGCTGAGGAACAATATGGAAGAGTTGCTTCTGGAGATTCAAAACCCAACTCGTGGACACTACTGGACTTTG : GTGATGTCGTTGTTCATCTATTTCTTCCTCCGCAGCGTGAGTACTACAACCTGGAAGAATTCTATGGCAATGCAGCATCCATCGAACTACCATTTGAGAACCAACAACAATTGCGAGGACCTACTGGTTATTGAAGTCCCAACAGTTATGGCCTCGTGGTGATTAACAGAAAGTGTAGCAAATTATGAGGCAATCACAGTGTTCCCCCGATTGCTGACAAGGAACGATTAACATATCTGGGCAAACTCTGTTGATCCACTGGTTGCGTTATTTTTCTTAAATTAGTAGTAAGATAAAGCTCTCTACTAAGTTGTCTCTGTAGAAGTATTGGTTAAGAAATAGTTTACAAGCATTCTGAACTAATAAGGGCTCATTGTCACGTTTGATGAAAGAACCTAACATCCTGCTTCTTTTTCCCTTGATGTGAGTTGAGTTTAAATGAAGAATGAGGATTTAAAT</gDNA_template>
            <first_frame> A  T  E  F  P  H  T  I  L  S  C  A  V  S  S  K  V  E  I  S  Y  R  K  M  K  V  H  S  C  I  H  P  L  P  S  T  P  S  T  G  I  L  V  S  A  G  P  A  E  A  K  L  A  A  N  T  R  K  L  Y  S  L  T  L  N  S  S  N  Y  V  P  F  P  Y  K  D  Q  K  F  S  R  S  S  S  T  D  F  S  R  T  A  I  G  S  :  N  V  S  E  D  T  D  D  M  F  D  D  L  L  R  T  H  G  K  V  V  Y  K  R  N  D  Q  K  P  A  S  E  E  I  D  D  D  A  E  S  L  S   : F  A  M  A  V  A  K  V  A  S  D  V  K  A  G  D  I  K  V  L  F  V  K  P  L  V  Y  W  T  R  F  F  I  I  A  T  A  F  S  R  P  Q  I  D  A  I  G :   T  R  V  R  D  M  A  E  E  Q  Y  G  R  V  A  S  G  D  S  K  P  N  S  W  T  L  L  D  F   : G  D  V  V  V  H  L  F  L  P  P  Q  R  E  Y  Y  N  L  E  E  F  Y  G  N  A  A  S  I  E  L  P  F  E  N  Q  Q  Q  L  R  G  P  T  G  Y  *  S  P  N  S  Y  G  L  V  V  I  N  R  K  C  S  K  L  *  G  N  H  S  V  P  P  I  A  D  K  E  R  L  T  Y  L  G  K  L  C  *  S  T  G  C  V  I  F  L  K  L  V  V  R  *  S  S  L  L  S  C  L  C  R  S  I  G  *  E  I  V  Y  K  H  S  E  L  I  R  A  H  C  H  V  *  *  K  N  L  T  S  C  F  F  F  P  *  C  E  L  S  L  N  E  E  *  G  F  K  </first_frame>
            <second_frame>  Q  L  S  F  P  I  Q  S  S  L  V  Q  Y  L  L  K  L  K  S  R  I  E  K  *  K  Y  T  P  A  F  I  L  F  P  L  L  P  P  P  E  F  W  S  L  P  V  L  R  K  L  S  L  L  L  T  P  E  S  F  I  L  *  L  *  I  P  L  I  M  S  H  F  L  I  K  I  R  N  F  P  E  A  A  L  R  I  F  L  E  R  L  S  V  R :   M  *  V  K  I  Q  M  T  C  L  M  I  S  *  E  R  M  A  K  W  Y  T  K  E  M  T  K  N  L  Q  V  R  R  L  M  M  M  L  K  A  Y  R  :  L  Q  W  L  W  L  K  L  Q  V  M  S  R  L  E  I  *  R  S  S  L  S  S  L  *  Y  I  G  L  G  F  S  L  L  L  L  H  S  L  A  H  R  L  M  P  L   : G  P  E  *  E  I  W  L  R  N  N  M  E  E  L  L  L  E  I  Q  N  P  T  R  G  H  Y  W  T  L  :  V  M  S  L  F  I  Y  F  F  L  R  S  V  S  T  T  T  W  K  N  S  M  A  M  Q  H  P  S  N  Y  H  L  R  T  N  N  N  C  E  D  L  L  V  I  E  V  P  T  V  M  A  S  W  *  L  T  E  S  V  A  N  Y  E  A  I  T  V  F  P  R  L  L  T  R  N  D  *  H  I  W  A  N  S  V  D  P  L  V  A  L  F  F  L  N  *  *  *  D  K  A  L  Y  *  V  V  S  V  E  V  L  V  K  K  *  F  T  S  I  L  N  *  *  G  L  I  V  T  F  D  E  R  T  *  H  P  A  S  F  S  L  D  V  S  *  V  *  M  K  N  E  D  L  N </second_frame>
            <third_frame>   N  *  V  S  P  Y  N  P  L  L  C  S  I  F  *  S  *  N  L  V  *  K  N  E  S  T  L  L  H  S  S  S  S  L  Y  S  L  H  R  N  F  G  L  C  R  S  C  G  S  *  A  C  C  *  H  Q  K  A  L  F  F  N  F  E  F  L  *  L  C  P  I  S  L  *  R  S  E  I  F  Q  K  Q  L  Y  G  F  F  *  N  G  Y  R  F   : E  C  K  *  R  Y  R  *  H  V  *  *  S  P  K  N  A  W  Q  S  G  I  Q  K  K  *  P  K  T  C  K  *  G  D  *  *  *  C  *  K  P  I  V :   C  N  G  C  G  *  S  C  K  *  C  Q  G  W  R  Y  K  G  P  L  C  Q  A  S  S  I  L  D  S  V  F  H  Y  C  Y  C  I  L  S  P  T  D  *  C  H  W  :  D  Q  S  K  R  Y  G  *  G  T  I  W  K  S  C  F  W  R  F  K  T  Q  L  V  D  T  T  G  L  W :   *  C  R  C  S  S  I  S  S  S  A  A  *  V  L  Q  P  G  R  I  L  W  Q  C  S  I  H  R  T  T  I  *  E  P  T  T  I  A  R  T  Y  W  L  L  K  S  Q  Q  L  W  P  R  G  D  *  Q  K  V  *  Q  I  M  R  Q  S  Q  C  S  P  D  C  *  Q  G  T  I  N  I  S  G  Q  T  L  L  I  H  W  L  R  Y  F  S  *  I  S  S  K  I  K  L  S  T  K  L  S  L  *  K  Y  W  L  R  N  S  L  Q  A  F  *  T  N  K  G  S  L  S  R  L  M  K  E  P  N  I  L  L  L  F  P  L  M  *  V  E  F  K  *  R  M  R  I  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11690" stop="11971"/>
                    <exon start="12914" stop="13040"/>
                    <exon start="13892" stop="14030"/>
                    <exon start="14167" stop="14255"/>
                    <exon start="14933" stop="15066"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ATEFPHTILSCAVSSKVEISYRKMKVHSCIHPLPSTPSTGILVSAGPAEAKLAANTRKLYSLTLNSSNYVPFPYKDQKFSRSSSTDFSRTAIGSNVSEDTDDMFDDLLRTHGKVVYKRNDQKPASEEIDDDAESLSFAMAVAKVASDVKAGDIKVLFVKPLVYWTRFFIIATAFSRPQIDAIGTRVRDMAEEQYGRVASGDSKPNSWTLLDFGDVVVHLFLPPQREYYNLEEFYGNAASIELPFENQQQLRGPTGY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="19357" PGL_stop="15592"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19357" e_stop="19187"/>
            <exon e_start="18842" e_stop="17745"/>
            <exon e_start="16589" e_stop="16212"/>
            <exon e_start="15925" e_stop="15592"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.960" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.860" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="0.997"/>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19357" e_stop="19187" e_length="171"/>
          </exon>
          <intron i_serial="1" don_prob="0.960" acc_prob="0.998">
            <gDNA_intron_boundary i_start="19186" i_stop="18843" i_length="344"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18842" e_stop="17745" e_length="1098"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.860">
            <gDNA_intron_boundary i_start="17744" i_stop="16590" i_length="1155"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="16589" e_stop="16212" e_length="378"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="16211" i_stop="15926" i_length="286"/>
          </intron>
          <exon e_serial="4" e_score="0.964">
            <gDNA_exon_boundary e_start="15925" e_stop="15592" e_length="334"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19357" stop="19187"/>
              <exon start="18842" stop="18382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19356" stop="19187"/>
              <exon start="18842" stop="18466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19259" stop="19187"/>
              <exon start="18842" stop="18244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19247" stop="19187"/>
              <exon start="18842" stop="18197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19247" stop="19187"/>
              <exon start="18842" stop="18230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19247" stop="19187"/>
              <exon start="18842" stop="18381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18401" stop="17745"/>
              <exon start="16589" stop="16511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17775" stop="17745"/>
              <exon start="16589" stop="16212"/>
              <exon start="15925" stop="15592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395416" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGGCCCCAATAATTTCTGTCTCCGGCGATCAGCTGAACGACGGTACTGGTCCTCCCTTTTCGACTTGTGCCTTTTTTTCGCTCTATTCCTCTCGCATTTGGATTCCTCCTCTCTCGAGATTGAGACCTACATGCTTGGTGAAACCGGTTGCAGTGCAACGTCTGCCTATG : TGGGTATGGTCTCGAGTTAATATATTTCAGCACAAGCAGTGCAAAATCTAGAGGATTTCATGGCAGGCAATGGCCTGCCAGCTCTGGGTCGTGTGAAGCTCAGTGATTTGGTACCATTGGAAGGTCTTCCTTCTGATTCGTATAAATTATCTGTCTCAACTTTGTCACAGTCATTGGCTCAGTATTCAGCTGCCATTATACAGCTATCCACAAGTGATGGAGCTCTTTTAAGGTCTAGTCTAGAGTCTGCCCGACTTTACTTTCAACACAAACCCTCTTATCCTGCAGCGGATGTTATTCATTCTGATGATTCTCAGGAGTGGTGTAAGACCTCTGGTTACCATGCAGATCCTCAACAATGGCAAGAAACATATGATTTCAGGCCAGGGCTCACTCCTTCGGAACCCACCACTGAAATTGAATTCCCTCCTGCTGGTTTGGCTGACATATTCTCTTTGCTTGGTAGAGCAGCAAGGGATATATTGGACGCCATCAGCTTCTATTTAAATCTGCGTAGCTCTCCATTTACTGAAATACTTGATAATGTTCCACTCAGAAATCGAGAAACATCATCCTCTGTATTATCCGTCTGTTGTCATTCCAGGCCATCTTTTCAGGGTGCTCAGCACCATGGCCTGACAACTCAAGAGGATGGTCATTTGGGGATGTTCTCGGATCATGAGCATCAGGTTGACAGAAGCCTTGTTACAATTGTTAAGTCGGATAGGCCTGGTCTACATGTAAGAGATTTTCATGGTCACTGGGTTCTTGTGGATGGTGATCTTGGCCCCCAAGAAGCAATTGTTTATCCTGGCCTTGCATTATATCAGGCAACTGCGGGCTATATCAGCCCTGCACTTCATCGGACAGACATTGGTAATCAGCAGGGTAGCATATATGGACGCTGTTCTCTCTCTTTTAAACTTATGCCCAAGTCCATGACCAACCTCAATTGTTCAGAAATGCGGGCTGCTGGTCATGGGGTTGAAGCTCAATTCCAGCTTCCCGTACCAGTTGATGACTTCATGCAGAGATCAACTGATCAGTTGCTTAACAGGAGCAATTTCCCTACATTCAACTTTCCAACAGTCCAAGATG : GATCTATGAAGCCCATGATGAGGAGAAGGAAGAGTAACTCAAGATCTAAACCTCTTCCACCTTCAAAGAGGTTGAGATTGGAGGCACAAAGAGTTCTCAAAGAGAGAGTTCAAGACATAGCTGATAAAAAGGGCATTAAGCTGAGGTTCTGCACCTTAAAGGATTGTGAAAGTCACATCCAGTCACTTGATAGCCCATGTACGAACATAAGAATGGAAATTGGATGGCCACCGGGAGTTCCATTTGTTCACCCACATGATCTCCCAAATAAGGCTAAGATTGGATTTCTTGAAACATATGAACCTGGTTGGTCTGCAACTCATGATATGGAGTTGAGCCTAATCGATCCCGGACAGCCAAGTCAACACACTTCTAACT : GAATCTATGTTGCTATCAGAATGCTGCCTGATGAGTGCTTGGATTCATTATACCAATATTTGTCTGCTTAGTTATGCTCGTCTCATGCAGATCTTGCTAATTTGTATATGAACTTCAATTAAGATATGAATGCACAATGAACTGTTCCTTTGTTTATCGTAATCGTTGTCCCTGTACATATTAGTTTGTAAAATTTGATGGAATATTAGTTGTAAATTCCGAATGTACTCCTAGTTTTCTCGGCTCTCATATCTTAGCTCTTGTGGAGCATTTTATGTTGGCCAAAGAGTTTGAATTTATATAGTGGTTGGATCTTAGAAGCTAACTTAACTTC</gDNA_template>
            <first_frame> M  A  P  I  I  S  V  S  G  D  Q  L  N  D  G  T  G  P  P  F  S  T  C  A  F  F  S  L  Y  S  S  R  I  W  I  P  P  L  S  R  L  R  P  T  C  L  V  K  P  V  A  V  Q  R  L  P  M  :  W  V  W  S  R  V  N  I  F  Q  H  K  Q  C  K  I  *  R  I  S  W  Q  A  M  A  C  Q  L  W  V  V  *  S  S  V  I  W  Y  H  W  K  V  F  L  L  I  R  I  N  Y  L  S  Q  L  C  H  S  H  W  L  S  I  Q  L  P  L  Y  S  Y  P  Q  V  M  E  L  F  *  G  L  V  *  S  L  P  D  F  T  F  N  T  N  P  L  I  L  Q  R  M  L  F  I  L  M  I  L  R  S  G  V  R  P  L  V  T  M  Q  I  L  N  N  G  K  K  H  M  I  S  G  Q  G  S  L  L  R  N  P  P  L  K  L  N  S  L  L  L  V  W  L  T  Y  S  L  C  L  V  E  Q  Q  G  I  Y  W  T  P  S  A  S  I  *  I  C  V  A  L  H  L  L  K  Y  L  I  M  F  H  S  E  I  E  K  H  H  P  L  Y  Y  P  S  V  V  I  P  G  H  L  F  R  V  L  S  T  M  A  *  Q  L  K  R  M  V  I  W  G  C  S  R  I  M  S  I  R  L  T  E  A  L  L  Q  L  L  S  R  I  G  L  V  Y  M  *  E  I  F  M  V  T  G  F  L  W  M  V  I  L  A  P  K  K  Q  L  F  I  L  A  L  H  Y  I  R  Q  L  R  A  I  S  A  L  H  F  I  G  Q  T  L  V  I  S  R  V  A  Y  M  D  A  V  L  S  L  L  N  L  C  P  S  P  *  P  T  S  I  V  Q  K  C  G  L  L  V  M  G  L  K  L  N  S  S  F  P  Y  Q  L  M  T  S  C  R  D  Q  L  I  S  C  L  T  G  A  I  S  L  H  S  T  F  Q  Q  S  K  M  :  D  L  *  S  P  *  *  G  E  G  R  V  T  Q  D  L  N  L  F  H  L  Q  R  G  *  D  W  R  H  K  E  F  S  K  R  E  F  K  T  *  L  I  K  R  A  L  S  *  G  S  A  P  *  R  I  V  K  V  T  S  S  H  L  I  A  H  V  R  T  *  E  W  K  L  D  G  H  R  E  F  H  L  F  T  H  M  I  S  Q  I  R  L  R  L  D  F  L  K  H  M  N  L  V  G  L  Q  L  M  I  W  S  *  A  *  S  I  P  D  S  Q  V  N  T  L  L  T  :  E  S  M  L  L  S  E  C  C  L  M  S  A  W  I  H  Y  T  N  I  C  L  L  S  Y  A  R  L  M  Q  I  L  L  I  C  I  *  T  S  I  K  I  *  M  H  N  E  L  F  L  C  L  S  *  S  L  S  L  Y  I  L  V  C  K  I  *  W  N  I  S  C  K  F  R  M  Y  S  *  F  S  R  L  S  Y  L  S  S  C  G  A  F  Y  V  G  Q  R  V  *  I  Y  I  V  V  G  S  *  K  L  T  *  L  </first_frame>
            <second_frame>  W  P  Q  *  F  L  S  P  A  I  S  *  T  T  V  L  V  L  P  F  R  L  V  P  F  F  R  S  I  P  L  A  F  G  F  L  L  S  R  D  *  D  L  H  A  W  *  N  R  L  Q  C  N  V  C  L  C :   G  Y  G  L  E  L  I  Y  F  S  T  S  S  A  K  S  R  G  F  H  G  R  Q  W  P  A  S  S  G  S  C  E  A  Q  *  F  G  T  I  G  R  S  S  F  *  F  V  *  I  I  C  L  N  F  V  T  V  I  G  S  V  F  S  C  H  Y  T  A  I  H  K  *  W  S  S  F  K  V  *  S  R  V  C  P  T  L  L  S  T  Q  T  L  L  S  C  S  G  C  Y  S  F  *  *  F  S  G  V  V  *  D  L  W  L  P  C  R  S  S  T  M  A  R  N  I  *  F  Q  A  R  A  H  S  F  G  T  H  H  *  N  *  I  P  S  C  W  F  G  *  H  I  L  F  A  W  *  S  S  K  G  Y  I  G  R  H  Q  L  L  F  K  S  A  *  L  S  I  Y  *  N  T  *  *  C  S  T  Q  K  S  R  N  I  I  L  C  I  I  R  L  L  S  F  Q  A  I  F  S  G  C  S  A  P  W  P  D  N  S  R  G  W  S  F  G  D  V  L  G  S  *  A  S  G  *  Q  K  P  C  Y  N  C  *  V  G  *  A  W  S  T  C  K  R  F  S  W  S  L  G  S  C  G  W  *  S  W  P  P  R  S  N  C  L  S  W  P  C  I  I  S  G  N  C  G  L  Y  Q  P  C  T  S  S  D  R  H  W  *  S  A  G  *  H  I  W  T  L  F  S  L  F  *  T  Y  A  Q  V  H  D  Q  P  Q  L  F  R  N  A  G  C  W  S  W  G  *  S  S  I  P  A  S  R  T  S  *  *  L  H  A  E  I  N  *  S  V  A  *  Q  E  Q  F  P  Y  I  Q  L  S  N  S  P  R  W :   I  Y  E  A  H  D  E  E  K  E  E  *  L  K  I  *  T  S  S  T  F  K  E  V  E  I  G  G  T  K  S  S  Q  R  E  S  S  R  H  S  *  *  K  G  H  *  A  E  V  L  H  L  K  G  L  *  K  S  H  P  V  T  *  *  P  M  Y  E  H  K  N  G  N  W  M  A  T  G  S  S  I  C  S  P  T  *  S  P  K  *  G  *  D  W  I  S  *  N  I  *  T  W  L  V  C  N  S  *  Y  G  V  E  P  N  R  S  R  T  A  K  S  T  H  F  *  L :   N  L  C  C  Y  Q  N  A  A  *  *  V  L  G  F  I  I  P  I  F  V  C  L  V  M  L  V  S  C  R  S  C  *  F  V  Y  E  L  Q  L  R  Y  E  C  T  M  N  C  S  F  V  Y  R  N  R  C  P  C  T  Y  *  F  V  K  F  D  G  I  L  V  V  N  S  E  C  T  P  S  F  L  G  S  H  I  L  A  L  V  E  H  F  M  L  A  K  E  F  E  F  I  *  W  L  D  L  R  S  *  L  N  F </second_frame>
            <third_frame>   G  P  N  N  F  C  L  R  R  S  A  E  R  R  Y  W  S  S  L  F  D  L  C  L  F  F  A  L  F  L  S  H  L  D  S  S  S  L  E  I  E  T  Y  M  L  G  E  T  G  C  S  A  T  S  A  Y   : V  G  M  V  S  S  *  Y  I  S  A  Q  A  V  Q  N  L  E  D  F  M  A  G  N  G  L  P  A  L  G  R  V  K  L  S  D  L  V  P  L  E  G  L  P  S  D  S  Y  K  L  S  V  S  T  L  S  Q  S  L  A  Q  Y  S  A  A  I  I  Q  L  S  T  S  D  G  A  L  L  R  S  S  L  E  S  A  R  L  Y  F  Q  H  K  P  S  Y  P  A  A  D  V  I  H  S  D  D  S  Q  E  W  C  K  T  S  G  Y  H  A  D  P  Q  Q  W  Q  E  T  Y  D  F  R  P  G  L  T  P  S  E  P  T  T  E  I  E  F  P  P  A  G  L  A  D  I  F  S  L  L  G  R  A  A  R  D  I  L  D  A  I  S  F  Y  L  N  L  R  S  S  P  F  T  E  I  L  D  N  V  P  L  R  N  R  E  T  S  S  S  V  L  S  V  C  C  H  S  R  P  S  F  Q  G  A  Q  H  H  G  L  T  T  Q  E  D  G  H  L  G  M  F  S  D  H  E  H  Q  V  D  R  S  L  V  T  I  V  K  S  D  R  P  G  L  H  V  R  D  F  H  G  H  W  V  L  V  D  G  D  L  G  P  Q  E  A  I  V  Y  P  G  L  A  L  Y  Q  A  T  A  G  Y  I  S  P  A  L  H  R  T  D  I  G  N  Q  Q  G  S  I  Y  G  R  C  S  L  S  F  K  L  M  P  K  S  M  T  N  L  N  C  S  E  M  R  A  A  G  H  G  V  E  A  Q  F  Q  L  P  V  P  V  D  D  F  M  Q  R  S  T  D  Q  L  L  N  R  S  N  F  P  T  F  N  F  P  T  V  Q  D   : G  S  M  K  P  M  M  R  R  R  K  S  N  S  R  S  K  P  L  P  P  S  K  R  L  R  L  E  A  Q  R  V  L  K  E  R  V  Q  D  I  A  D  K  K  G  I  K  L  R  F  C  T  L  K  D  C  E  S  H  I  Q  S  L  D  S  P  C  T  N  I  R  M  E  I  G  W  P  P  G  V  P  F  V  H  P  H  D  L  P  N  K  A  K  I  G  F  L  E  T  Y  E  P  G  W  S  A  T  H  D  M  E  L  S  L  I  D  P  G  Q  P  S  Q  H  T  S  N   : *  I  Y  V  A  I  R  M  L  P  D  E  C  L  D  S  L  Y  Q  Y  L  S  A  *  L  C  S  S  H  A  D  L  A  N  L  Y  M  N  F  N  *  D  M  N  A  Q  *  T  V  P  L  F  I  V  I  V  V  P  V  H  I  S  L  *  N  L  M  E  Y  *  L  *  I  P  N  V  L  L  V  F  S  A  L  I  S  *  L  L  W  S  I  L  C  W  P  K  S  L  N  L  Y  S  G  W  I  L  E  A  N  L  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18822" stop="17745"/>
                    <exon start="16589" stop="16212"/>
                    <exon start="15925" stop="15924"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1455</number_coding_nucleotides>
                  <number_encoded_amino_acids>485</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YISAQAVQNLEDFMAGNGLPALGRVKLSDLVPLEGLPSDSYKLSVSTLSQSLAQYSAAIIQLSTSDGALLRSSLESARLYFQHKPSYPAADVIHSDDSQEWCKTSGYHADPQQWQETYDFRPGLTPSEPTTEIEFPPAGLADIFSLLGRAARDILDAISFYLNLRSSPFTEILDNVPLRNRETSSSVLSVCCHSRPSFQGAQHHGLTTQEDGHLGMFSDHEHQVDRSLVTIVKSDRPGLHVRDFHGHWVLVDGDLGPQEAIVYPGLALYQATAGYISPALHRTDIGNQQGSIYGRCSLSFKLMPKSMTNLNCSEMRAAGHGVEAQFQLPVPVDDFMQRSTDQLLNRSNFPTFNFPTVQDGSMKPMMRRRKSNSRSKPLPPSKRLRLEAQRVLKERVQDIADKKGIKLRFCTLKDCESHIQSLDSPCTNIRMEIGWPPGVPFVHPHDLPNKAKIGFLETYEPGWSATHDMELSLIDPGQPSQHTSN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19357" stop="19187"/>
                    <exon start="18842" stop="18792"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MAPIISVSGDQLNDGTGPPFSTCAFFSLYSSRIWIPPLSRLRPTCLVKPVAVQRLPMWVWSRVNIFQHKQCKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="17335" e_stop="16899"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="17335" e_stop="16899" e_length="437"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17335" stop="16899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316647" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAAAGAACCTCAACACAGCATTCCTTCTTCTTCTTCTTACGAGGAATCTAAGACATCTTGACTTGTATTAGGATCATCTATGCACTAAAAACTCAAAAGAAGGATTCAATTCATCTTAAGTTTCTGTAAGGAGCTGTTTGTAGCTTCAAAATATCTTTAATTTCTTTCCTTCCAATCCGAAAAAAGTACTTGGTGTTAATTTTGAAGATTTATTTAGAACAAAAACAAAATGCTGACTGAAGCTGGTGTCTCACGTATGATTGGTCAGAAATATGAAAAGTTTTGTGACAAGCTTAGCCGTTTTTCATAATTAAAAGTGAAAGGTCTTAGTTTTGCTTGTTGAGGACCTGAAGGACTGTTATTATCTCGAATATCTGGAAATGACTTTCAAACATGGTCAAAGTAGATAAAGCAGCCTCTATTGGTTTAATCATG</gDNA_template>
            <first_frame> R  K  E  P  Q  H  S  I  P  S  S  S  S  Y  E  E  S  K  T  S  *  L  V  L  G  S  S  M  H  *  K  L  K  R  R  I  Q  F  I  L  S  F  C  K  E  L  F  V  A  S  K  Y  L  *  F  L  S  F  Q  S  E  K  S  T  W  C  *  F  *  R  F  I  *  N  K  N  K  M  L  T  E  A  G  V  S  R  M  I  G  Q  K  Y  E  K  F  C  D  K  L  S  R  F  S  *  L  K  V  K  G  L  S  F  A  C  *  G  P  E  G  L  L  L  S  R  I  S  G  N  D  F  Q  T  W  S  K  *  I  K  Q  P  L  L  V  *  S   </first_frame>
            <second_frame>  E  K  N  L  N  T  A  F  L  L  L  L  L  T  R  N  L  R  H  L  D  L  Y  *  D  H  L  C  T  K  N  S  K  E  G  F  N  S  S  *  V  S  V  R  S  C  L  *  L  Q  N  I  F  N  F  F  P  S  N  P  K  K  V  L  G  V  N  F  E  D  L  F  R  T  K  T  K  C  *  L  K  L  V  S  H  V  *  L  V  R  N  M  K  S  F  V  T  S  L  A  V  F  H  N  *  K  *  K  V  L  V  L  L  V  E  D  L  K  D  C  Y  Y  L  E  Y  L  E  M  T  F  K  H  G  Q  S  R  *  S  S  L  Y  W  F  N  H  </second_frame>
            <third_frame>   K  R  T  S  T  Q  H  S  F  F  F  F  L  R  G  I  *  D  I  L  T  C  I  R  I  I  Y  A  L  K  T  Q  K  K  D  S  I  H  L  K  F  L  *  G  A  V  C  S  F  K  I  S  L  I  S  F  L  P  I  R  K  K  Y  L  V  L  I  L  K  I  Y  L  E  Q  K  Q  N  A  D  *  S  W  C  L  T  Y  D  W  S  E  I  *  K  V  L  *  Q  A  *  P  F  F  I  I  K  S  E  R  S  *  F  C  L  L  R  T  *  R  T  V  I  I  S  N  I  W  K  *  L  S  N  M  V  K  V  D  K  A  A  S  I  G  L  I  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0215P04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="26233" PGL_stop="19702"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26233" e_stop="26106"/>
            <exon e_start="24990" e_stop="24498"/>
            <exon e_start="24179" e_stop="24036"/>
            <exon e_start="23224" e_stop="22984"/>
            <exon e_start="21944" e_stop="21444"/>
            <exon e_start="20477" e_stop="19702"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.876" acc_prob="0.806" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.973" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26233" e_stop="26106" e_length="128"/>
          </exon>
          <intron i_serial="1" don_prob="0.876" acc_prob="0.806">
            <gDNA_intron_boundary i_start="26105" i_stop="24991" i_length="1115"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24990" e_stop="24498" e_length="493"/>
          </exon>
          <intron i_serial="2" don_prob="0.926" acc_prob="0.997">
            <gDNA_intron_boundary i_start="24497" i_stop="24180" i_length="318"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24179" e_stop="24036" e_length="144"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.989">
            <gDNA_intron_boundary i_start="24035" i_stop="23225" i_length="811"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="23224" e_stop="22984" e_length="241"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.979">
            <gDNA_intron_boundary i_start="22983" i_stop="21945" i_length="1039"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="21944" e_stop="21444" e_length="501"/>
          </exon>
          <intron i_serial="5" don_prob="0.982" acc_prob="0.973">
            <gDNA_intron_boundary i_start="21443" i_stop="20478" i_length="966"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="20477" e_stop="19702" e_length="776"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26233" stop="26106"/>
              <exon start="24990" stop="24498"/>
              <exon start="24179" stop="24036"/>
              <exon start="23224" stop="23190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26217" stop="26106"/>
              <exon start="24990" stop="24498"/>
              <exon start="24179" stop="24036"/>
              <exon start="23224" stop="22984"/>
              <exon start="21944" stop="21444"/>
              <exon start="20477" stop="19816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26183" stop="26106"/>
              <exon start="24990" stop="24746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24990" stop="24498"/>
              <exon start="24179" stop="24157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24863" stop="24498"/>
              <exon start="24179" stop="24036"/>
              <exon start="23224" stop="23031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24816" stop="24498"/>
              <exon start="24179" stop="24036"/>
              <exon start="23224" stop="23171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23008" stop="22984"/>
              <exon start="21944" stop="21444"/>
              <exon start="20477" stop="20256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23007" stop="22984"/>
              <exon start="21944" stop="21504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21878" stop="21444"/>
              <exon start="20477" stop="20375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21850" stop="21444"/>
              <exon start="20477" stop="20103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21848" stop="21444"/>
              <exon start="20477" stop="20021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21650" stop="21444"/>
              <exon start="20477" stop="19817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21482" stop="21444"/>
              <exon start="20477" stop="19702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543473" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20314" stop="19750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350539" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAGTGAAGAGAAAAATATAATACTCTTAACACTGGGGCCTCTCATGGCGTAGCGTGGGTTTGACTATGTTTGCAGCCTTTTGTTTTCCTTTCCCAATTTCATATCGAGTTTAGGCTGCTTGTGTGAG : AAATATGGATCGAGCAAGGTTAAATAAAAGAACCCATTGCTCAGGTTCAACACCGTCAGAGGAGTCAGCCTTAGATCTTGAAAAATACTGTTGCAGTTATTCTAATCTTCCTTCACTTAGTCCACCAACACTTCAACCTTATGCATCGGCTGGACAACACTCTGAGAGTAATGCTGCATACTTCTCCTGGCCTAGTCGGCTAAATGATGCTGCTGAAGAGAGAGCAAACTATTTCGGAAATCTTCAGAAAGGGGTTTTGCCAGAAACTCTTGGCCGATTGCCCGAGGGGCAGCGAGCAACAACCTTACTTGACCTCATGACTATAAGGGCATCTCATAGCAAACTCTTGCGTTGCTACAGTCTCGGTACAGCAATTGGTTTTCGTATTCGACGTGGTGTTTTGACTGATATACCAGCAATACTAGTGTTTGTATCCCGGAAAGTTCACAAACAATGGCTTAGTCCAATCCAGTGTCTACCTACTGCTTTAGAG : GGCCCTGGAGGTGTGTGGTGTGAAGTGGATGTGGTCGAGTTCTCCTATTTTGGTGCACCAGAGCCAACACCCAAGGAGCAGTTGTACACAGAGATAGTCGATGACCTGCGGGGTAGTGACCCATATATTGGTTCAGGATCTCAG : GTAGCAAGCCAGGAGACATATGGAACCTTGGGCGCTATTGTGAGGAGTCTGTCAGGCAATCGACAAGTTGGTTTCCTAACAAACCGGCATGTTGCTGTTGACTTAGATTACCCAAATCAAAAAATGTTTCATCCTTTACCTCCAACATTAGGACCTGGAGTATATCTGGGTTCAGTGGAGAGAGCTACATCTTTTATCAGAGACGACCTTTGGTATGGCATATTTGCTGGCATAAATCCAG : AGACATTTGTCAGGGCAGATGGTGCATTCATTCCTTTCACAGATGATTTTGATATGACCTCTGTTACTACTTCTGTTAAGGGCATAGGGGAAATTGGAGATGTCAAAATTATAGATTTGCAATCTCCTATTAGTAGTCTCATCGGAAAGCAAGTGACGAAGGTCGGAAGAAGCTCTGGATTGACTACAGGCACTGTCTTGGCATATGCCCTTGAATATAATGATGAGAAAGGGATTTGCTTCTTGACTGATTTTCTTGTCAATGGAGAAAACCAGCAGACTTTTGACCTTGAAGGAGACAGTGGAAGTTTAATCGTTTTGAAGGGTGAGAATGGGGAAAAACCCCGACCAATTGGTATTATTTGGGGTGGAACTGCAAATAGGGGACGGCTTAAACTAAAGGTGGGACAATCTCCAGAAAATTGGACTAGTGGAGTTGACCTTGGGCGTCTGCTCAATTTCCTTGAACTTGATATCATTACCAAAGATGAAGCTCTAAAAG : TTGCAGTGCAAGAACAGAGAGCTGCCTCTGCCACAATGGTGGGCTCTACGGCTGGGGATTCTTCACCTCCTGATATAATGCTTCCAAAGGACAAAATAGAGCCTCTTGGGCTTCACATTCAACAAATTCCCTTGGAAGATGGCATTGGTGGCCCTGATATAAACTCTTCACCTGTGGAAGCTACATTTAACTTGGAAGAAAGTGGGATCAACTTTGATGCAAGTGTTGAACATCAATTCATTCCAAGCTTCAATGGGCAACCTCCGGCTAATCAAGACGACCATCGTGATAAGTCAGCATACGAGAATCTCTCAGCTCTTAGGAAAGGCTCTGATGAAGACATCAGCTTTTCCTTGCAGTTGGGTGGTCATGAATCCAAGAGAAGACGTTCAGAGCCTCCACCAAGCGCAGATGAACCAGAATGATTTTCTCCTTTTATCTGCTGGTACATTTAACTTTGAGGTCTTCCATGGAAAGGAAATGCATTTTGTGTTTGGTTCTAAAACAAGAAAGAGGTCCAATTTGGTTTTTGAGGTGCTAAATTTTCATCATATGGCCATTGATGGCAACCTGTGTATGAAGAGTTCTGTATTTGAACATCTCAGTAGTGCAAAATCCAATTGTAAAATACATGCAAGCTAAAAATGAGGCTGCTTTCTTGAGCTATTTTGATTCATGGCTCCATGCAGTAGACATAAAAATTTGCCTTTGATGTATATTTATGCTGGATATGTTAAGAAACCAAGTGTTTATATATATATATATATGTATTGCAA</gDNA_template>
            <first_frame> A  V  K  R  K  I  *  Y  S  *  H  W  G  L  S  W  R  S  V  G  L  T  M  F  A  A  F  C  F  P  F  P  I  S  Y  R  V  *  A  A  C  V  R :   N  M  D  R  A  R  L  N  K  R  T  H  C  S  G  S  T  P  S  E  E  S  A  L  D  L  E  K  Y  C  C  S  Y  S  N  L  P  S  L  S  P  P  T  L  Q  P  Y  A  S  A  G  Q  H  S  E  S  N  A  A  Y  F  S  W  P  S  R  L  N  D  A  A  E  E  R  A  N  Y  F  G  N  L  Q  K  G  V  L  P  E  T  L  G  R  L  P  E  G  Q  R  A  T  T  L  L  D  L  M  T  I  R  A  S  H  S  K  L  L  R  C  Y  S  L  G  T  A  I  G  F  R  I  R  R  G  V  L  T  D  I  P  A  I  L  V  F  V  S  R  K  V  H  K  Q  W  L  S  P  I  Q  C  L  P  T  A  L  E  :  G  P  G  G  V  W  C  E  V  D  V  V  E  F  S  Y  F  G  A  P  E  P  T  P  K  E  Q  L  Y  T  E  I  V  D  D  L  R  G  S  D  P  Y  I  G  S  G  S  Q  :  V  A  S  Q  E  T  Y  G  T  L  G  A  I  V  R  S  L  S  G  N  R  Q  V  G  F  L  T  N  R  H  V  A  V  D  L  D  Y  P  N  Q  K  M  F  H  P  L  P  P  T  L  G  P  G  V  Y  L  G  S  V  E  R  A  T  S  F  I  R  D  D  L  W  Y  G  I  F  A  G  I  N  P   : E  T  F  V  R  A  D  G  A  F  I  P  F  T  D  D  F  D  M  T  S  V  T  T  S  V  K  G  I  G  E  I  G  D  V  K  I  I  D  L  Q  S  P  I  S  S  L  I  G  K  Q  V  T  K  V  G  R  S  S  G  L  T  T  G  T  V  L  A  Y  A  L  E  Y  N  D  E  K  G  I  C  F  L  T  D  F  L  V  N  G  E  N  Q  Q  T  F  D  L  E  G  D  S  G  S  L  I  V  L  K  G  E  N  G  E  K  P  R  P  I  G  I  I  W  G  G  T  A  N  R  G  R  L  K  L  K  V  G  Q  S  P  E  N  W  T  S  G  V  D  L  G  R  L  L  N  F  L  E  L  D  I  I  T  K  D  E  A  L  K   : V  A  V  Q  E  Q  R  A  A  S  A  T  M  V  G  S  T  A  G  D  S  S  P  P  D  I  M  L  P  K  D  K  I  E  P  L  G  L  H  I  Q  Q  I  P  L  E  D  G  I  G  G  P  D  I  N  S  S  P  V  E  A  T  F  N  L  E  E  S  G  I  N  F  D  A  S  V  E  H  Q  F  I  P  S  F  N  G  Q  P  P  A  N  Q  D  D  H  R  D  K  S  A  Y  E  N  L  S  A  L  R  K  G  S  D  E  D  I  S  F  S  L  Q  L  G  G  H  E  S  K  R  R  R  S  E  P  P  P  S  A  D  E  P  E  *  F  S  P  F  I  C  W  Y  I  *  L  *  G  L  P  W  K  G  N  A  F  C  V  W  F  *  N  K  K  E  V  Q  F  G  F  *  G  A  K  F  S  S  Y  G  H  *  W  Q  P  V  Y  E  E  F  C  I  *  T  S  Q  *  C  K  I  Q  L  *  N  T  C  K  L  K  M  R  L  L  S  *  A  I  L  I  H  G  S  M  Q  *  T  *  K  F  A  F  D  V  Y  L  C  W  I  C  *  E  T  K  C  L  Y  I  Y  I  Y  V  L  Q </first_frame>
            <second_frame>  Q  *  R  E  K  Y  N  T  L  N  T  G  A  S  H  G  V  A  W  V  *  L  C  L  Q  P  F  V  F  L  S  Q  F  H  I  E  F  R  L  L  V  *   : E  I  W  I  E  Q  G  *  I  K  E  P  I  A  Q  V  Q  H  R  Q  R  S  Q  P  *  I  L  K  N  T  V  A  V  I  L  I  F  L  H  L  V  H  Q  H  F  N  L  M  H  R  L  D  N  T  L  R  V  M  L  H  T  S  P  G  L  V  G  *  M  M  L  L  K  R  E  Q  T  I  S  E  I  F  R  K  G  F  C  Q  K  L  L  A  D  C  P  R  G  S  E  Q  Q  P  Y  L  T  S  *  L  *  G  H  L  I  A  N  S  C  V  A  T  V  S  V  Q  Q  L  V  F  V  F  D  V  V  F  *  L  I  Y  Q  Q  Y  *  C  L  Y  P  G  K  F  T  N  N  G  L  V  Q  S  S  V  Y  L  L  L  *  R :   A  L  E  V  C  G  V  K  W  M  W  S  S  S  P  I  L  V  H  Q  S  Q  H  P  R  S  S  C  T  Q  R  *  S  M  T  C  G  V  V  T  H  I  L  V  Q  D  L  R :   *  Q  A  R  R  H  M  E  P  W  A  L  L  *  G  V  C  Q  A  I  D  K  L  V  S  *  Q  T  G  M  L  L  L  T  *  I  T  Q  I  K  K  C  F  I  L  Y  L  Q  H  *  D  L  E  Y  I  W  V  Q  W  R  E  L  H  L  L  S  E  T  T  F  G  M  A  Y  L  L  A  *  I  Q  :  R  H  L  S  G  Q  M  V  H  S  F  L  S  Q  M  I  L  I  *  P  L  L  L  L  L  L  R  A  *  G  K  L  E  M  S  K  L  *  I  C  N  L  L  L  V  V  S  S  E  S  K  *  R  R  S  E  E  A  L  D  *  L  Q  A  L  S  W  H  M  P  L  N  I  M  M  R  K  G  F  A  S  *  L  I  F  L  S  M  E  K  T  S  R  L  L  T  L  K  E  T  V  E  V  *  S  F  *  R  V  R  M  G  K  N  P  D  Q  L  V  L  F  G  V  E  L  Q  I  G  D  G  L  N  *  R  W  D  N  L  Q  K  I  G  L  V  E  L  T  L  G  V  C  S  I  S  L  N  L  I  S  L  P  K  M  K  L  *  K  :  L  Q  C  K  N  R  E  L  P  L  P  Q  W  W  A  L  R  L  G  I  L  H  L  L  I  *  C  F  Q  R  T  K  *  S  L  L  G  F  T  F  N  K  F  P  W  K  M  A  L  V  A  L  I  *  T  L  H  L  W  K  L  H  L  T  W  K  K  V  G  S  T  L  M  Q  V  L  N  I  N  S  F  Q  A  S  M  G  N  L  R  L  I  K  T  T  I  V  I  S  Q  H  T  R  I  S  Q  L  L  G  K  A  L  M  K  T  S  A  F  P  C  S  W  V  V  M  N  P  R  E  D  V  Q  S  L  H  Q  A  Q  M  N  Q  N  D  F  L  L  L  S  A  G  T  F  N  F  E  V  F  H  G  K  E  M  H  F  V  F  G  S  K  T  R  K  R  S  N  L  V  F  E  V  L  N  F  H  H  M  A  I  D  G  N  L  C  M  K  S  S  V  F  E  H  L  S  S  A  K  S  N  C  K  I  H  A  S  *  K  *  G  C  F  L  E  L  F  *  F  M  A  P  C  S  R  H  K  N  L  P  L  M  Y  I  Y  A  G  Y  V  K  K  P  S  V  Y  I  Y  I  Y  M  Y  C   </second_frame>
            <third_frame>   S  E  E  K  N  I  I  L  L  T  L  G  P  L  M  A  *  R  G  F  D  Y  V  C  S  L  L  F  S  F  P  N  F  I  S  S  L  G  C  L  C  E  :  K  Y  G  S  S  K  V  K  *  K  N  P  L  L  R  F  N  T  V  R  G  V  S  L  R  S  *  K  I  L  L  Q  L  F  *  S  S  F  T  *  S  T  N  T  S  T  L  C  I  G  W  T  T  L  *  E  *  C  C  I  L  L  L  A  *  S  A  K  *  C  C  *  R  E  S  K  L  F  R  K  S  S  E  R  G  F  A  R  N  S  W  P  I  A  R  G  A  A  S  N  N  L  T  *  P  H  D  Y  K  G  I  S  *  Q  T  L  A  L  L  Q  S  R  Y  S  N  W  F  S  Y  S  T  W  C  F  D  *  Y  T  S  N  T  S  V  C  I  P  E  S  S  Q  T  M  A  *  S  N  P  V  S  T  Y  C  F  R   : G  P  W  R  C  V  V  *  S  G  C  G  R  V  L  L  F  W  C  T  R  A  N  T  Q  G  A  V  V  H  R  D  S  R  *  P  A  G  *  *  P  I  Y  W  F  R  I  S   : G  S  K  P  G  D  I  W  N  L  G  R  Y  C  E  E  S  V  R  Q  S  T  S  W  F  P  N  K  P  A  C  C  C  *  L  R  L  P  K  S  K  N  V  S  S  F  T  S  N  I  R  T  W  S  I  S  G  F  S  G  E  S  Y  I  F  Y  Q  R  R  P  L  V  W  H  I  C  W  H  K  S  R :   D  I  C  Q  G  R  W  C  I  H  S  F  H  R  *  F  *  Y  D  L  C  Y  Y  F  C  *  G  H  R  G  N  W  R  C  Q  N  Y  R  F  A  I  S  Y  *  *  S  H  R  K  A  S  D  E  G  R  K  K  L  W  I  D  Y  R  H  C  L  G  I  C  P  *  I  *  *  *  E  R  D  L  L  L  D  *  F  S  C  Q  W  R  K  P  A  D  F  *  P  *  R  R  Q  W  K  F  N  R  F  E  G  *  E  W  G  K  T  P  T  N  W  Y  Y  L  G  W  N  C  K  *  G  T  A  *  T  K  G  G  T  I  S  R  K  L  D  *  W  S  *  P  W  A  S  A  Q  F  P  *  T  *  Y  H  Y  Q  R  *  S  S  K  S :   C  S  A  R  T  E  S  C  L  C  H  N  G  G  L  Y  G  W  G  F  F  T  S  *  Y  N  A  S  K  G  Q  N  R  A  S  W  A  S  H  S  T  N  S  L  G  R  W  H  W  W  P  *  Y  K  L  F  T  C  G  S  Y  I  *  L  G  R  K  W  D  Q  L  *  C  K  C  *  T  S  I  H  S  K  L  Q  W  A  T  S  G  *  S  R  R  P  S  *  *  V  S  I  R  E  S  L  S  S  *  E  R  L  *  *  R  H  Q  L  F  L  A  V  G  W  S  *  I  Q  E  K  T  F  R  A  S  T  K  R  R  *  T  R  M  I  F  S  F  Y  L  L  V  H  L  T  L  R  S  S  M  E  R  K  C  I  L  C  L  V  L  K  Q  E  R  G  P  I  W  F  L  R  C  *  I  F  I  I  W  P  L  M  A  T  C  V  *  R  V  L  Y  L  N  I  S  V  V  Q  N  P  I  V  K  Y  M  Q  A  K  N  E  A  A  F  L  S  Y  F  D  S  W  L  H  A  V  D  I  K  I  C  L  *  C  I  F  M  L  D  M  L  R  N  Q  V  F  I  Y  I  Y  I  C  I  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26119" stop="26106"/>
                    <exon start="24990" stop="24498"/>
                    <exon start="24179" stop="24036"/>
                    <exon start="23224" stop="22984"/>
                    <exon start="21944" stop="21444"/>
                    <exon start="20477" stop="20053"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1815</number_coding_nucleotides>
                  <number_encoded_amino_acids>605</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AACVRNMDRARLNKRTHCSGSTPSEESALDLEKYCCSYSNLPSLSPPTLQPYASAGQHSESNAAYFSWPSRLNDAAEERANYFGNLQKGVLPETLGRLPEGQRATTLLDLMTIRASHSKLLRCYSLGTAIGFRIRRGVLTDIPAILVFVSRKVHKQWLSPIQCLPTALEGPGGVWCEVDVVEFSYFGAPEPTPKEQLYTEIVDDLRGSDPYIGSGSQVASQETYGTLGAIVRSLSGNRQVGFLTNRHVAVDLDYPNQKMFHPLPPTLGPGVYLGSVERATSFIRDDLWYGIFAGINPETFVRADGAFIPFTDDFDMTSVTTSVKGIGEIGDVKIIDLQSPISSLIGKQVTKVGRSSGLTTGTVLAYALEYNDEKGICFLTDFLVNGENQQTFDLEGDSGSLIVLKGENGEKPRPIGIIWGGTANRGRLKLKVGQSPENWTSGVDLGRLLNFLELDIITKDEALKVAVQEQRAASATMVGSTAGDSSPPDIMLPKDKIEPLGLHIQQIPLEDGIGGPDINSSPVEATFNLEESGINFDASVEHQFIPSFNGQPPANQDDHRDKSAYENLSALRKGSDEDISFSLQLGGHESKRRRSEPPPSADEPE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="26090" e_stop="25536"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="26090" e_stop="25536" e_length="555"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26090" stop="25536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325723" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTTTTCCTCTCGAAGAATCCATCACTATTGCGATTGATCTTCCTTTTTTCACTTTCTCTTCTTCATGCAGAGATATCTTCACACGCCCATGTTTTTTTTTTGAATTTTCCAGGACCCCATTAATTTTGTTCCCTCAATTTGTACTGTGCACAATCGTTATCAAAATAAGTGCTTTTTCAATATTACTGTATTTATTATCCGTTTTTCCTCTCAAGTGTTTCTTTTCACTTTTCCTGTTCCTGGTTTTGTTGCTTTTCCTTGGTTATATATGTTTGGCTGAGAACTTTTTGTTTTTATTTCCGTTGTTGGAGAAATAGGATATATTGGACCTCACCTAGTTTGGGATTGAAGCATAGTTATTGACATATTGTTGATTGATTATGGTTGTTGTTGAACTTATTATCTATTTCTGTTGAGAAAGATACCTGTTTTCTTAGGGCCATGTTGATTGTTGAGGCAGTTTTATCATCTTATGAAGTTCATTCTTTCAGATTTTAAAGTAGCTGAGAGAAATGATGTGATGGATAATATTGTTGTAAGCTGTGGCTAACT</gDNA_template>
            <first_frame> F  F  F  L  S  K  N  P  S  L  L  R  L  I  F  L  F  S  L  S  L  L  H  A  E  I  S  S  H  A  H  V  F  F  L  N  F  P  G  P  H  *  F  C  S  L  N  L  Y  C  A  Q  S  L  S  K  *  V  L  F  Q  Y  Y  C  I  Y  Y  P  F  F  L  S  S  V  S  F  H  F  S  C  S  W  F  C  C  F  S  L  V  I  Y  V  W  L  R  T  F  C  F  Y  F  R  C  W  R  N  R  I  Y  W  T  S  P  S  L  G  L  K  H  S  Y  *  H  I  V  D  *  L  W  L  L  L  N  L  L  S  I  S  V  E  K  D  T  C  F  L  R  A  M  L  I  V  E  A  V  L  S  S  Y  E  V  H  S  F  R  F  *  S  S  *  E  K  *  C  D  G  *  Y  C  C  K  L  W  L  T </first_frame>
            <second_frame>  F  F  S  S  R  R  I  H  H  Y  C  D  *  S  S  F  F  H  F  L  F  F  M  Q  R  Y  L  H  T  P  M  F  F  F  *  I  F  Q  D  P  I  N  F  V  P  S  I  C  T  V  H  N  R  Y  Q  N  K  C  F  F  N  I  T  V  F  I  I  R  F  S  S  Q  V  F  L  F  T  F  P  V  P  G  F  V  A  F  P  W  L  Y  M  F  G  *  E  L  F  V  F  I  S  V  V  G  E  I  G  Y  I  G  P  H  L  V  W  D  *  S  I  V  I  D  I  L  L  I  D  Y  G  C  C  *  T  Y  Y  L  F  L  L  R  K  I  P  V  F  L  G  P  C  *  L  L  R  Q  F  Y  H  L  M  K  F  I  L  S  D  F  K  V  A  E  R  N  D  V  M  D  N  I  V  V  S  C  G  *   </second_frame>
            <third_frame>   F  F  P  L  E  E  S  I  T  I  A  I  D  L  P  F  F  T  F  S  S  S  C  R  D  I  F  T  R  P  C  F  F  F  E  F  S  R  T  P  L  I  L  F  P  Q  F  V  L  C  T  I  V  I  K  I  S  A  F  S  I  L  L  Y  L  L  S  V  F  P  L  K  C  F  F  S  L  F  L  F  L  V  L  L  L  F  L  G  Y  I  C  L  A  E  N  F  L  F  L  F  P  L  L  E  K  *  D  I  L  D  L  T  *  F  G  I  E  A  *  L  L  T  Y  C  *  L  I  M  V  V  V  E  L  I  I  Y  F  C  *  E  R  Y  L  F  S  *  G  H  V  D  C  *  G  S  F  I  I  L  *  S  S  F  F  Q  I  L  K  *  L  R  E  M  M  *  W  I  I  L  L  *  A  V  A  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26088" stop="25771"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFPLEESITIAIDLPFFTFSSSCRDIFTRPCFFFEFSRTPLILFPQFVLCTIVIKISAFSILLYLLSVFPLKCFFSLFLFLVLLLFLGYICLAENFLFLFPLLEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="19702" PGL_stop="20109"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19702" e_stop="20109"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19702" e_stop="20109" e_length="408"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19702" stop="20109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19711" stop="20058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304583" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGCAATACATATATATATATATATAAACACTTGGTTTCTTAACATATCCAGCATAAATATACATCAAAGGCAAATTTTTATGTCTACTGCATGGAGCCATGAATCAAAATAGCTCAAGAAAGCAGCCTCATTTTTAGCTTGCATGTATTTTACAATTGGATTTTGCACTACTGAGATGTTCAAATACAGAACTCTTCATACACAGGTTGCCATCAATGGCCATATGATGAAAATTTAGCACCTCAAAAACCAAATTGGACCTCTTTCTTGTTTTAGAACCAAACACAAAATGCATTTCCTTTCCATGGAAGACCTCAAAGTTAAATGTACCAGCAGATAAAAGGAGAAAATCATTCTGGTTCATCTGCGCTTGGTGGAGGCTCTGAACGTCTTCTCTTGGATTCATG</gDNA_template>
            <first_frame> L  Q  Y  I  Y  I  Y  I  *  T  L  G  F  L  T  Y  P  A  *  I  Y  I  K  G  K  F  L  C  L  L  H  G  A  M  N  Q  N  S  S  R  K  Q  P  H  F  *  L  A  C  I  L  Q  L  D  F  A  L  L  R  C  S  N  T  E  L  F  I  H  R  L  P  S  M  A  I  *  *  K  F  S  T  S  K  T  K  L  D  L  F  L  V  L  E  P  N  T  K  C  I  S  F  P  W  K  T  S  K  L  N  V  P  A  D  K  R  R  K  S  F  W  F  I  C  A  W  W  R  L  *  T  S  S  L  G  F  M </first_frame>
            <second_frame>  C  N  T  Y  I  Y  I  Y  K  H  L  V  S  *  H  I  Q  H  K  Y  T  S  K  A  N  F  Y  V  Y  C  M  E  P  *  I  K  I  A  Q  E  S  S  L  I  F  S  L  H  V  F  Y  N  W  I  L  H  Y  *  D  V  Q  I  Q  N  S  S  Y  T  G  C  H  Q  W  P  Y  D  E  N  L  A  P  Q  K  P  N  W  T  S  F  L  F  *  N  Q  T  Q  N  A  F  P  F  H  G  R  P  Q  S  *  M  Y  Q  Q  I  K  G  E  N  H  S  G  S  S  A  L  G  G  G  S  E  R  L  L  L  D  S   </second_frame>
            <third_frame>   A  I  H  I  Y  I  Y  I  N  T  W  F  L  N  I  S  S  I  N  I  H  Q  R  Q  I  F  M  S  T  A  W  S  H  E  S  K  *  L  K  K  A  A  S  F  L  A  C  M  Y  F  T  I  G  F  C  T  T  E  M  F  K  Y  R  T  L  H  T  Q  V  A  I  N  G  H  M  M  K  I  *  H  L  K  N  Q  I  G  P  L  S  C  F  R  T  K  H  K  M  H  F  L  S  M  E  D  L  K  V  K  C  T  S  R  *  K  E  K  I  I  L  V  H  L  R  L  V  E  A  L  N  V  F  S  W  I  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0215P04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="27595" PGL_stop="27114"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27595" e_stop="27114"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="27595" e_stop="27114" e_length="482"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27595" stop="27114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328251" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCCATCTCTGCAATATTCATCTTCTCTATATCATATTTAAGTTTTTTTTTAATTAATGAAACCAAGAAGGAAGGAAGAAATTAAGAGAAGATGAAGAAGCTGAATTTGTTATTGAGGAAGTGTAAGACTTTGTCAAGGCAACTAGGAAGAAGCTCATCTTATAGTAGTTTAAGGTCAAAATCTGCAAGAGAAGATTTTTGGAATGTGGAAGATAATATGGAAGATTTTGAGACAATTCTTGTTGGCAACTCAAGAAGGAAATATGTCATAAAATCAAAATACTTGAGCCATCCACTATTGAATGCTCTAATAGAGAAATCAAAGCAAAAGCATGGGGAAAAAGATCATCTTTCCGTTAAGTGTGAAGTTGTGCTTTTTGATCATCTTCTCTGGTTACTTGAAAATGCTGATCCTATCAACCTTAATTCTGATTCATTTGAGGAATTGGCTGATCTATATGTTGTTTAATGTGAATAATTT</gDNA_template>
            <first_frame> F  P  S  L  Q  Y  S  S  S  L  Y  H  I  *  V  F  F  *  L  M  K  P  R  R  K  E  E  I  K  R  R  *  R  S  *  I  C  Y  *  G  S  V  R  L  C  Q  G  N  *  E  E  A  H  L  I  V  V  *  G  Q  N  L  Q  E  K  I  F  G  M  W  K  I  I  W  K  I  L  R  Q  F  L  L  A  T  Q  E  G  N  M  S  *  N  Q  N  T  *  A  I  H  Y  *  M  L  *  *  R  N  Q  S  K  S  M  G  K  K  I  I  F  P  L  S  V  K  L  C  F  L  I  I  F  S  G  Y  L  K  M  L  I  L  S  T  L  I  L  I  H  L  R  N  W  L  I  Y  M  L  F  N  V  N  N   </first_frame>
            <second_frame>  F  H  L  C  N  I  H  L  L  Y  I  I  F  K  F  F  F  N  *  *  N  Q  E  G  R  K  K  L  R  E  D  E  E  A  E  F  V  I  E  E  V  *  D  F  V  K  A  T  R  K  K  L  I  L  *  *  F  K  V  K  I  C  K  R  R  F  L  E  C  G  R  *  Y  G  R  F  *  D  N  S  C  W  Q  L  K  K  E  I  C  H  K  I  K  I  L  E  P  S  T  I  E  C  S  N  R  E  I  K  A  K  A  W  G  K  R  S  S  F  R  *  V  *  S  C  A  F  *  S  S  S  L  V  T  *  K  C  *  S  Y  Q  P  *  F  *  F  I  *  G  I  G  *  S  I  C  C  L  M  *  I  I  </second_frame>
            <third_frame>   S  I  S  A  I  F  I  F  S  I  S  Y  L  S  F  F  L  I  N  E  T  K  K  E  G  R  N  *  E  K  M  K  K  L  N  L  L  L  R  K  C  K  T  L  S  R  Q  L  G  R  S  S  S  Y  S  S  L  R  S  K  S  A  R  E  D  F  W  N  V  E  D  N  M  E  D  F  E  T  I  L  V  G  N  S  R  R  K  Y  V  I  K  S  K  Y  L  S  H  P  L  L  N  A  L  I  E  K  S  K  Q  K  H  G  E  K  D  H  L  S  V  K  C  E  V  V  L  F  D  H  L  L  W  L  L  E  N  A  D  P  I  N  L  N  S  D  S  F  E  E  L  A  D  L  Y  V  V  *  C  E  *  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27509" stop="27126"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKMKKLNLLLRKCKTLSRQLGRSSSYSSLRSKSAREDFWNVEDNMEDFETILVGNSRRKYVIKSKYLSHPLLNALIEKSKQKHGEKDHLSVKCEVVLFDHLLWLLENADPINLNSDSFEELADLYVV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="28858" PGL_stop="29558"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28858" e_stop="29558"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="28858" e_stop="29558" e_length="701"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28858" stop="29558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28858" stop="29529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28858" stop="29510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377532" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATCCTTGTTTGGTCAAGCTTCCAAGATCTATTTATTTATGCTCTCACACAAATGAAATCAACAAGAAAAATGAGCAATGAGAAATTTATGCAGCTAAGCTTTCAAGCTATAGAATTATATGAATGCGGACTGTTTGGACAATTCAGAACTCATCAAACTGACAAAAGTTCTACTTTTGAATCTTCTTCTTTCCGTTTATTGCAAAAATCATATTGCAGAAGCCAACTAAGGCGTATTGGGGAGGGTGATAAGGAGTGAAAGAATTACAATAATATTACACAAAGTCGAATGACCTATGGACATTGAATGTTACATGACGAGCCAAAAATTGAGATTTGTAGCAGCTGAGTGAAAACCATAAATCTATCTCATCAGCACCAGTTGCAGTGCCTTAAAATTCACAAACCTGGCTAGCTCATAAATTATATGCTTCACCATTAAACCTCTTGTAGCAAAATCTGCTGTCTCAGAAATCTGAATGGTTCAAACAACCGTGAACACAACATAAAAATTCGTGAAATCTCCTTCACCAACTGTTTTTCAATTAGACATTGAACCGGAACAGCATTATATCCCCTTCTTGCACAACATAATCTTTTCCTTCTAACCTCAACTGCATACACAGATAAATCCTGTAACCAGCTTGATCTATTCTCTTGTTTGCACGGGTCAGTAGACTTAGTGCTCACATAGAAGCACC</gDNA_template>
            <first_frame> Y  P  C  L  V  K  L  P  R  S  I  Y  L  C  S  H  T  N  E  I  N  K  K  N  E  Q  *  E  I  Y  A  A  K  L  S  S  Y  R  I  I  *  M  R  T  V  W  T  I  Q  N  S  S  N  *  Q  K  F  Y  F  *  I  F  F  F  P  F  I  A  K  I  I  L  Q  K  P  T  K  A  Y  W  G  G  *  *  G  V  K  E  L  Q  *  Y  Y  T  K  S  N  D  L  W  T  L  N  V  T  *  R  A  K  N  *  D  L  *  Q  L  S  E  N  H  K  S  I  S  S  A  P  V  A  V  P  *  N  S  Q  T  W  L  A  H  K  L  Y  A  S  P  L  N  L  L  *  Q  N  L  L  S  Q  K  S  E  W  F  K  Q  P  *  T  Q  H  K  N  S  *  N  L  L  H  Q  L  F  F  N  *  T  L  N  R  N  S  I  I  S  P  S  C  T  T  *  S  F  P  S  N  L  N  C  I  H  R  *  I  L  *  P  A  *  S  I  L  L  F  A  R  V  S  R  L  S  A  H  I  E  A   </first_frame>
            <second_frame>  I  L  V  W  S  S  F  Q  D  L  F  I  Y  A  L  T  Q  M  K  S  T  R  K  M  S  N  E  K  F  M  Q  L  S  F  Q  A  I  E  L  Y  E  C  G  L  F  G  Q  F  R  T  H  Q  T  D  K  S  S  T  F  E  S  S  S  F  R  L  L  Q  K  S  Y  C  R  S  Q  L  R  R  I  G  E  G  D  K  E  *  K  N  Y  N  N  I  T  Q  S  R  M  T  Y  G  H  *  M  L  H  D  E  P  K  I  E  I  C  S  S  *  V  K  T  I  N  L  S  H  Q  H  Q  L  Q  C  L  K  I  H  K  P  G  *  L  I  N  Y  M  L  H  H  *  T  S  C  S  K  I  C  C  L  R  N  L  N  G  S  N  N  R  E  H  N  I  K  I  R  E  I  S  F  T  N  C  F  S  I  R  H  *  T  G  T  A  L  Y  P  L  L  A  Q  H  N  L  F  L  L  T  S  T  A  Y  T  D  K  S  C  N  Q  L  D  L  F  S  C  L  H  G  S  V  D  L  V  L  T  *  K  H  </second_frame>
            <third_frame>   S  L  F  G  Q  A  S  K  I  Y  L  F  M  L  S  H  K  *  N  Q  Q  E  K  *  A  M  R  N  L  C  S  *  A  F  K  L  *  N  Y  M  N  A  D  C  L  D  N  S  E  L  I  K  L  T  K  V  L  L  L  N  L  L  L  S  V  Y  C  K  N  H  I  A  E  A  N  *  G  V  L  G  R  V  I  R  S  E  R  I  T  I  I  L  H  K  V  E  *  P  M  D  I  E  C  Y  M  T  S  Q  K  L  R  F  V  A  A  E  *  K  P  *  I  Y  L  I  S  T  S  C  S  A  L  K  F  T  N  L  A  S  S  *  I  I  C  F  T  I  K  P  L  V  A  K  S  A  V  S  E  I  *  M  V  Q  T  T  V  N  T  T  *  K  F  V  K  S  P  S  P  T  V  F  Q  L  D  I  E  P  E  Q  H  Y  I  P  F  L  H  N  I  I  F  S  F  *  P  Q  L  H  T  Q  I  N  P  V  T  S  L  I  Y  S  L  V  C  T  G  Q  *  T  *  C  S  H  R  S  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28859" stop="29116"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILVWSSFQDLFIYALTQMKSTRKMSNEKFMQLSFQAIELYECGLFGQFRTHQTDKSSTFESSSFRLLQKSYCRSQLRRIGEGDKE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="37387" PGL_stop="28944"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37387" e_stop="36977"/>
            <exon e_start="35991" e_stop="35803"/>
            <exon e_start="35676" e_stop="35623"/>
            <exon e_start="34315" e_stop="34205"/>
            <exon e_start="33828" e_stop="33766"/>
            <exon e_start="33617" e_stop="33363"/>
            <exon e_start="32861" e_stop="32715"/>
            <exon e_start="32609" e_stop="32582"/>
            <exon e_start="31686" e_stop="31616"/>
            <exon e_start="30362" e_stop="30303"/>
            <exon e_start="29471" e_stop="28944"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.914" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.803" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.909" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.854" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37387" e_stop="36977" e_length="411"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.914">
            <gDNA_intron_boundary i_start="36976" i_stop="35992" i_length="985"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35991" e_stop="35803" e_length="189"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="35802" i_stop="35677" i_length="126"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35676" e_stop="35623" e_length="54"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="35622" i_stop="34316" i_length="1307"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34315" e_stop="34205" e_length="111"/>
          </exon>
          <intron i_serial="4" don_prob="0.950" acc_prob="0.000">
            <gDNA_intron_boundary i_start="34204" i_stop="33829" i_length="376"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="33828" e_stop="33766" e_length="63"/>
          </exon>
          <intron i_serial="5" don_prob="0.971" acc_prob="0.989">
            <gDNA_intron_boundary i_start="33765" i_stop="33618" i_length="148"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="33617" e_stop="33363" e_length="255"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.979">
            <gDNA_intron_boundary i_start="33362" i_stop="32862" i_length="501"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="32861" e_stop="32715" e_length="147"/>
          </exon>
          <intron i_serial="7" don_prob="0.803" acc_prob="0.996">
            <gDNA_intron_boundary i_start="32714" i_stop="32610" i_length="105"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="32609" e_stop="32582" e_length="28"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="32581" i_stop="31687" i_length="895"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="31686" e_stop="31616" e_length="71"/>
          </exon>
          <intron i_serial="9" don_prob="0.909" acc_prob="0.999">
            <gDNA_intron_boundary i_start="31615" i_stop="30363" i_length="1253"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="30362" e_stop="30303" e_length="60"/>
          </exon>
          <intron i_serial="10" don_prob="1.000" acc_prob="0.854">
            <gDNA_intron_boundary i_start="30302" i_stop="29472" i_length="831"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="29471" e_stop="28944" e_length="528"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37387" stop="36977"/>
              <exon start="35991" stop="35803"/>
              <exon start="35676" stop="35623"/>
              <exon start="34315" stop="34205"/>
              <exon start="33828" stop="33766"/>
              <exon start="33617" stop="33363"/>
              <exon start="32861" stop="32715"/>
              <exon start="32609" stop="32582"/>
              <exon start="31686" stop="31616"/>
              <exon start="30362" stop="30303"/>
              <exon start="29471" stop="29032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37386" stop="36977"/>
              <exon start="35991" stop="35888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37286" stop="36977"/>
              <exon start="35991" stop="35803"/>
              <exon start="35676" stop="35623"/>
              <exon start="34315" stop="34205"/>
              <exon start="33828" stop="33766"/>
              <exon start="33617" stop="33466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37286" stop="36977"/>
              <exon start="35991" stop="35803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37256" stop="36977"/>
              <exon start="35991" stop="35803"/>
              <exon start="35676" stop="35623"/>
              <exon start="34315" stop="34205"/>
              <exon start="33828" stop="33768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37220" stop="36977"/>
              <exon start="35991" stop="35803"/>
              <exon start="35676" stop="35623"/>
              <exon start="34315" stop="34205"/>
              <exon start="33828" stop="33766"/>
              <exon start="33617" stop="33399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35931" stop="35803"/>
              <exon start="35676" stop="35623"/>
              <exon start="34315" stop="34205"/>
              <exon start="33828" stop="33766"/>
              <exon start="33617" stop="33363"/>
              <exon start="32861" stop="32786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35674" stop="35623"/>
              <exon start="34315" stop="34205"/>
              <exon start="33828" stop="33766"/>
              <exon start="33617" stop="33363"/>
              <exon start="32861" stop="32792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34285" stop="34205"/>
              <exon start="33828" stop="33766"/>
              <exon start="33617" stop="33363"/>
              <exon start="32861" stop="32715"/>
              <exon start="32609" stop="32582"/>
              <exon start="31686" stop="31616"/>
              <exon start="30362" stop="30304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33596" stop="33363"/>
              <exon start="32861" stop="32715"/>
              <exon start="32609" stop="32582"/>
              <exon start="31686" stop="31616"/>
              <exon start="30362" stop="30303"/>
              <exon start="29471" stop="29397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33528" stop="33363"/>
              <exon start="32861" stop="32715"/>
              <exon start="32609" stop="32582"/>
              <exon start="31686" stop="31616"/>
              <exon start="30362" stop="30303"/>
              <exon start="29471" stop="29162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33528" stop="33363"/>
              <exon start="32861" stop="32715"/>
              <exon start="32609" stop="32582"/>
              <exon start="31686" stop="31616"/>
              <exon start="30362" stop="30314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33518" stop="33363"/>
              <exon start="32861" stop="32715"/>
              <exon start="32609" stop="32582"/>
              <exon start="31686" stop="31616"/>
              <exon start="30362" stop="30303"/>
              <exon start="29471" stop="29357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29289" stop="28944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232130" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29289" stop="28944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232630" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGTTTCATTTTCCCAAATTTTTGGGCTCAAATACAATTTTGGTGCAATTATTTGGGTAATTTTCTAATTTACATGTAGCGTCGTCGCTGAGTTAAACCCGAGAAATATTTGTAGTTGTAGCACGGCGATAGATAGCCGCAACGCTGTGTGTACCACTCAATAAGCACTTCAACTTGCTAGTGGTAAAATGGCGAGAATGGCTTGCTCTCAGCTTCTTCCTTCCATGGCAATTCCGCTCAAGTCTTCTTTCCTCAATGGTTCTTCTCACCAGTGGTTACGACTCTCAGAATCTACGCATCCTGTGGTACTCATCAAAAGGCGCTTCTCCGTCGCTAAGATAAGCATGAGTTTGCGAGCTGGCATCGTTGGCCTTCCTAATGTCGGCAAGTCCACGCTGTTCAACGCCGTC : GTTGAGAATGGAAAGGCTCAGGCTGCTAATTTTCCTTTTTGCACAATAGAGCCAAATGTAGGGATAGTCGCTGTCCCTGATACACGTCTCCATGTTCTTTCTGATATAAGCAAATCCAAACGAGCGGTCCCGGCTTCGATAGAGTTTGTTGATATTGCTGGACTTGTAAAGGGAGCCAGTCAAGGGGAG : GGCCTGGGGAATAAGTTCTTGTCACATATACGTGAAGTGGACTCCATACTTCAG : GTAGTACGTTGTTTTGAGGACAATGACATTGTTCATGTGAATGGGAAGGTTGAGCCAAAAGCTGATATTGATGTAATCAACTTGGAATTAATTTTCTCAGATTTGGATCAG : ATTGAGAAAAGAATGGAGAAACTCAAAAAAGGTAGAGCTAAAGATTCACAAGCTAAAGTAAAG : GAGGAAGCAGAAAAGTCTGCCTTGGAGAAAATACAACAAGCACTACTGGATGGAAAACCAGCACGATCAGTATCTTTGTCGGAGTTTGAAAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCTGAGTTAAATTCTGGTGTGGTAACTATTTCAGCGCAG : GTTGAGTCTGAGCTATCTGAACTTCCTTTAGAAGAAAGAATAGAATATTTGAAATCGCTTGGTGTCAATGAAAGTGGCCTTGGAAATCTCATCAGAGAAACTTATGGTCTCCTAGGGTTGCGTACATACTTCACTTCTGGCGAGAAG : GAAACCAAAGCATGGACCATCCTCACAG : GAATGACTGCTCCTCAAGCAGCTGGGGTTATTCACTCCGACTTTGAAAAGGGCTTCATCAGGGCAGAGACG : GTTGCTTACGATGACTTTGTTTCTGCTGGTTCTTTTGCAGCTGCAAGGGAGAAAGGACTG : TTGAGGTTAGAAGGAAAAGATTATGTTGTGCAAGAAGGGGATATAATGCTGTTCCGGTTCAATGTCTAATTGAAAAACAGTTGGTGAAGGAGATTTCACGAATTTTTATGTTGTGTTCACGGTTGTTTGAACCATTCAGATTTCTGAGACAGCAGATTTTGCTACAAGAGGTTTAATGGTGAAGCATATAATTTATGAGCTAGCCAGGTTTGTGAATTTTAAGGCACTGCAACTGGTGCTGATGAGATAGATTTATGGTTTTCACTCAGCTGCTACAAATCTCAATTTTTGGCTCGTCATGTAACATTCAATGTCCATAGGTCATTCGACTTTGTGTAATATTATTGTAATTCTTTCACTCCTTATCACCCTCCCCAATACGCCTTAGTTGGCTTCTGCAATATGATTTTTGCAATAAACGGAAAGAAGAAGATTCAAAAGTAGAACTTTTGTCAGTTTGATGAGTTCTGAATTGTCCAAACAGTCCGCATTCATATAATTCTATAGCTTGAAAGCTTAGCTGCATAA</gDNA_template>
            <first_frame> F  V  S  F  S  Q  I  F  G  L  K  Y  N  F  G  A  I  I  W  V  I  F  *  F  T  C  S  V  V  A  E  L  N  P  R  N  I  C  S  C  S  T  A  I  D  S  R  N  A  V  C  T  T  Q  *  A  L  Q  L  A  S  G  K  M  A  R  M  A  C  S  Q  L  L  P  S  M  A  I  P  L  K  S  S  F  L  N  G  S  S  H  Q  W  L  R  L  S  E  S  T  H  P  V  V  L  I  K  R  R  F  S  V  A  K  I  S  M  S  L  R  A  G  I  V  G  L  P  N  V  G  K  S  T  L  F  N  A  V  :  V  E  N  G  K  A  Q  A  A  N  F  P  F  C  T  I  E  P  N  V  G  I  V  A  V  P  D  T  R  L  H  V  L  S  D  I  S  K  S  K  R  A  V  P  A  S  I  E  F  V  D  I  A  G  L  V  K  G  A  S  Q  G  E  :  G  L  G  N  K  F  L  S  H  I  R  E  V  D  S  I  L  Q  :  V  V  R  C  F  E  D  N  D  I  V  H  V  N  G  K  V  E  P  K  A  D  I  D  V  I  N  L  E  L  I  F  S  D  L  D  Q  :  I  E  K  R  M  E  K  L  K  K  G  R  A  K  D  S  Q  A  K  V  K  :  E  E  A  E  K  S  A  L  E  K  I  Q  Q  A  L  L  D  G  K  P  A  R  S  V  S  L  S  E  F  E  K  D  A  I  T  Q  L  C  L  L  T  M  K  P  V  I  F  V  A  N  V  A  E  S  E  V  A  E  P  E  N  N  P  H  V  K  E  V  I  K  K  A  A  E  L  N  S  G  V  V  T  I  S  A  Q  :  V  E  S  E  L  S  E  L  P  L  E  E  R  I  E  Y  L  K  S  L  G  V  N  E  S  G  L  G  N  L  I  R  E  T  Y  G  L  L  G  L  R  T  Y  F  T  S  G  E  K  :  E  T  K  A  W  T  I  L  T   : G  M  T  A  P  Q  A  A  G  V  I  H  S  D  F  E  K  G  F  I  R  A  E  T  :  V  A  Y  D  D  F  V  S  A  G  S  F  A  A  A  R  E  K  G  L  :  L  R  L  E  G  K  D  Y  V  V  Q  E  G  D  I  M  L  F  R  F  N  V  *  L  K  N  S  W  *  R  R  F  H  E  F  L  C  C  V  H  G  C  L  N  H  S  D  F  *  D  S  R  F  C  Y  K  R  F  N  G  E  A  Y  N  L  *  A  S  Q  V  C  E  F  *  G  T  A  T  G  A  D  E  I  D  L  W  F  S  L  S  C  Y  K  S  Q  F  L  A  R  H  V  T  F  N  V  H  R  S  F  D  F  V  *  Y  Y  C  N  S  F  T  P  Y  H  P  P  Q  Y  A  L  V  G  F  C  N  M  I  F  A  I  N  G  K  K  K  I  Q  K  *  N  F  C  Q  F  D  E  F  *  I  V  Q  T  V  R  I  H  I  I  L  *  L  E  S  L  A  A  * </first_frame>
            <second_frame>  L  F  H  F  P  K  F  L  G  S  N  T  I  L  V  Q  L  F  G  *  F  S  N  L  H  V  A  S  S  L  S  *  T  R  E  I  F  V  V  V  A  R  R  *  I  A  A  T  L  C  V  P  L  N  K  H  F  N  L  L  V  V  K  W  R  E  W  L  A  L  S  F  F  L  P  W  Q  F  R  S  S  L  L  S  S  M  V  L  L  T  S  G  Y  D  S  Q  N  L  R  I  L  W  Y  S  S  K  G  A  S  P  S  L  R  *  A  *  V  C  E  L  A  S  L  A  F  L  M  S  A  S  P  R  C  S  T  P  S :   L  R  M  E  R  L  R  L  L  I  F  L  F  A  Q  *  S  Q  M  *  G  *  S  L  S  L  I  H  V  S  M  F  F  L  I  *  A  N  P  N  E  R  S  R  L  R  *  S  L  L  I  L  L  D  L  *  R  E  P  V  K  G  R :   A  W  G  I  S  S  C  H  I  Y  V  K  W  T  P  Y  F  R :   *  Y  V  V  L  R  T  M  T  L  F  M  *  M  G  R  L  S  Q  K  L  I  L  M  *  S  T  W  N  *  F  S  Q  I  W  I  R :   L  R  K  E  W  R  N  S  K  K  V  E  L  K  I  H  K  L  K  *  R :   R  K  Q  K  S  L  P  W  R  K  Y  N  K  H  Y  W  M  E  N  Q  H  D  Q  Y  L  C  R  S  L  K  R  M  L  *  H  N  F  V  F  *  Q  *  S  L  S  Y  L  W  Q  M  *  R  N  Q  R  *  L  N  L  K  I  I  L  M  *  R  K  *  L  K  K  L  L  S  *  I  L  V  W  *  L  F  Q  R  R :   L  S  L  S  Y  L  N  F  L  *  K  K  E  *  N  I  *  N  R  L  V  S  M  K  V  A  L  E  I  S  S  E  K  L  M  V  S  *  G  C  V  H  T  S  L  L  A  R  R :   K  P  K  H  G  P  S  S  Q  :  E  *  L  L  L  K  Q  L  G  L  F  T  P  T  L  K  R  A  S  S  G  Q  R  R :   L  L  T  M  T  L  F  L  L  V  L  L  Q  L  Q  G  R  K  D  C :   *  G  *  K  E  K  I  M  L  C  K  K  G  I  *  C  C  S  G  S  M  S  N  *  K  T  V  G  E  G  D  F  T  N  F  Y  V  V  F  T  V  V  *  T  I  Q  I  S  E  T  A  D  F  A  T  R  G  L  M  V  K  H  I  I  Y  E  L  A  R  F  V  N  F  K  A  L  Q  L  V  L  M  R  *  I  Y  G  F  H  S  A  A  T  N  L  N  F  W  L  V  M  *  H  S  M  S  I  G  H  S  T  L  C  N  I  I  V  I  L  S  L  L  I  T  L  P  N  T  P  *  L  A  S  A  I  *  F  L  Q  *  T  E  R  R  R  F  K  S  R  T  F  V  S  L  M  S  S  E  L  S  K  Q  S  A  F  I  *  F  Y  S  L  K  A  *  L  H   </second_frame>
            <third_frame>   C  F  I  F  P  N  F  W  A  Q  I  Q  F  W  C  N  Y  L  G  N  F  L  I  Y  M  *  R  R  R  *  V  K  P  E  K  Y  L  *  L  *  H  G  D  R  *  P  Q  R  C  V  Y  H  S  I  S  T  S  T  C  *  W  *  N  G  E  N  G  L  L  S  A  S  S  F  H  G  N  S  A  Q  V  F  F  P  Q  W  F  F  S  P  V  V  T  T  L  R  I  Y  A  S  C  G  T  H  Q  K  A  L  L  R  R  *  D  K  H  E  F  A  S  W  H  R  W  P  S  *  C  R  Q  V  H  A  V  Q  R  R   : R  *  E  W  K  G  S  G  C  *  F  S  F  L  H  N  R  A  K  C  R  D  S  R  C  P  *  Y  T  S  P  C  S  F  *  Y  K  Q  I  Q  T  S  G  P  G  F  D  R  V  C  *  Y  C  W  T  C  K  G  S  Q  S  R  G   : G  P  G  E  *  V  L  V  T  Y  T  *  S  G  L  H  T  S   : G  S  T  L  F  *  G  Q  *  H  C  S  C  E  W  E  G  *  A  K  S  *  Y  *  C  N  Q  L  G  I  N  F  L  R  F  G  S   : D  *  E  K  N  G  E  T  Q  K  R  *  S  *  R  F  T  S  *  S  K   : G  G  S  R  K  V  C  L  G  E  N  T  T  S  T  T  G  W  K  T  S  T  I  S  I  F  V  G  V  *  K  G  C  Y  N  T  T  L  S  S  N  N  E  A  C  H  I  C  G  K  C  S  G  I  R  G  S  *  T  *  K  *  S  S  C  E  G  S  N  *  K  S  C  *  V  K  F  W  C  G  N  Y  F  S  A   : G  *  V  *  A  I  *  T  S  F  R  R  K  N  R  I  F  E  I  A  W  C  Q  *  K  W  P  W  K  S  H  Q  R  N  L  W  S  P  R  V  A  Y  I  L  H  F  W  R  E   : G  N  Q  S  M  D  H  P  H  R :   N  D  C  S  S  S  S  W  G  Y  S  L  R  L  *  K  G  L  H  Q  G  R  D   : G  C  L  R  *  L  C  F  C  W  F  F  C  S  C  K  G  E  R  T   : V  E  V  R  R  K  R  L  C  C  A  R  R  G  Y  N  A  V  P  V  Q  C  L  I  E  K  Q  L  V  K  E  I  S  R  I  F  M  L  C  S  R  L  F  E  P  F  R  F  L  R  Q  Q  I  L  L  Q  E  V  *  W  *  S  I  *  F  M  S  *  P  G  L  *  I  L  R  H  C  N  W  C  *  *  D  R  F  M  V  F  T  Q  L  L  Q  I  S  I  F  G  S  S  C  N  I  Q  C  P  *  V  I  R  L  C  V  I  L  L  *  F  F  H  S  L  S  P  S  P  I  R  L  S  W  L  L  Q  Y  D  F  C  N  K  R  K  E  E  D  S  K  V  E  L  L  S  V  *  *  V  L  N  C  P  N  S  P  H  S  Y  N  S  I  A  *  K  L  S  C  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37222" stop="36977"/>
                    <exon start="35991" stop="35803"/>
                    <exon start="35676" stop="35623"/>
                    <exon start="34315" stop="34205"/>
                    <exon start="33828" stop="33766"/>
                    <exon start="33617" stop="33363"/>
                    <exon start="32861" stop="32715"/>
                    <exon start="32609" stop="32582"/>
                    <exon start="31686" stop="31616"/>
                    <exon start="30362" stop="30303"/>
                    <exon start="29471" stop="29403"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1290</number_coding_nucleotides>
                  <number_encoded_amino_acids>430</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALQLASGKMARMACSQLLPSMAIPLKSSFLNGSSHQWLRLSESTHPVVLIKRRFSVAKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDTRLHVLSDISKSKRAVPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVEPKADIDVINLELIFSDLDQIEKRMEKLKKGRAKDSQAKVKEEAEKSALEKIQQALLDGKPARSVSLSEFEKDAITQLCLLTMKPVIFVANVAESEVAEPENNPHVKEVIKKAAELNSGVVTISAQVESELSELPLEERIEYLKSLGVNESGLGNLIRETYGLLGLRTYFTSGEKETKAWTILTGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVSAGSFAAAREKGLLRLEGKDYVVQEGDIMLFRFNV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="37386" e_stop="36977"/>
            <exon e_start="35991" e_stop="35803"/>
            <exon e_start="35676" e_stop="35623"/>
            <exon e_start="34315" e_stop="34205"/>
            <exon e_start="33828" e_stop="33766"/>
            <exon e_start="33607" e_stop="33363"/>
            <exon e_start="32861" e_stop="32715"/>
            <exon e_start="32609" e_stop="32582"/>
            <exon e_start="31686" e_stop="31616"/>
            <exon e_start="30362" e_stop="30303"/>
            <exon e_start="29471" e_stop="28944"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.914" e_score="0.980"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.803" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.909" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.854" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="37386" e_stop="36977" e_length="410"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.914">
            <gDNA_intron_boundary i_start="36976" i_stop="35992" i_length="985"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35991" e_stop="35803" e_length="189"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="35802" i_stop="35677" i_length="126"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35676" e_stop="35623" e_length="54"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="35622" i_stop="34316" i_length="1307"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34315" e_stop="34205" e_length="111"/>
          </exon>
          <intron i_serial="4" don_prob="0.950" acc_prob="0.000">
            <gDNA_intron_boundary i_start="34204" i_stop="33829" i_length="376"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="33828" e_stop="33766" e_length="63"/>
          </exon>
          <intron i_serial="5" don_prob="0.971" acc_prob="0.000">
            <gDNA_intron_boundary i_start="33765" i_stop="33608" i_length="158"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="33607" e_stop="33363" e_length="245"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.979">
            <gDNA_intron_boundary i_start="33362" i_stop="32862" i_length="501"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="32861" e_stop="32715" e_length="147"/>
          </exon>
          <intron i_serial="7" don_prob="0.803" acc_prob="0.996">
            <gDNA_intron_boundary i_start="32714" i_stop="32610" i_length="105"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="32609" e_stop="32582" e_length="28"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="32581" i_stop="31687" i_length="895"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="31686" e_stop="31616" e_length="71"/>
          </exon>
          <intron i_serial="9" don_prob="0.909" acc_prob="0.999">
            <gDNA_intron_boundary i_start="31615" i_stop="30363" i_length="1253"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="30362" e_stop="30303" e_length="60"/>
          </exon>
          <intron i_serial="10" don_prob="1.000" acc_prob="0.854">
            <gDNA_intron_boundary i_start="30302" i_stop="29472" i_length="831"/>
          </intron>
          <exon e_serial="11" e_score="0.994">
            <gDNA_exon_boundary e_start="29471" e_stop="28944" e_length="528"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37386" stop="36977"/>
              <exon start="35991" stop="35888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37286" stop="36977"/>
              <exon start="35991" stop="35803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37256" stop="36977"/>
              <exon start="35991" stop="35803"/>
              <exon start="35676" stop="35623"/>
              <exon start="34315" stop="34205"/>
              <exon start="33828" stop="33768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34315" stop="34205"/>
              <exon start="33828" stop="33766"/>
              <exon start="33607" stop="33363"/>
              <exon start="32861" stop="32771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33596" stop="33363"/>
              <exon start="32861" stop="32715"/>
              <exon start="32609" stop="32582"/>
              <exon start="31686" stop="31616"/>
              <exon start="30362" stop="30303"/>
              <exon start="29471" stop="29397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33528" stop="33363"/>
              <exon start="32861" stop="32715"/>
              <exon start="32609" stop="32582"/>
              <exon start="31686" stop="31616"/>
              <exon start="30362" stop="30303"/>
              <exon start="29471" stop="29162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33528" stop="33363"/>
              <exon start="32861" stop="32715"/>
              <exon start="32609" stop="32582"/>
              <exon start="31686" stop="31616"/>
              <exon start="30362" stop="30314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33518" stop="33363"/>
              <exon start="32861" stop="32715"/>
              <exon start="32609" stop="32582"/>
              <exon start="31686" stop="31616"/>
              <exon start="30362" stop="30303"/>
              <exon start="29471" stop="29357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29289" stop="28944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232130" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29289" stop="28944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232630" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTTTCATTTTCCCAAATTTTTGGGCTCAAATACAATTTTGGTGCAATTATTTGGGTAATTTTCTAATTTACATGTAGCGTCGTCGCTGAGTTAAACCCGAGAAATATTTGTAGTTGTAGCACGGCGATAGATAGCCGCAACGCTGTGTGTACCACTCAATAAGCACTTCAACTTGCTAGTGGTAAAATGGCGAGAATGGCTTGCTCTCAGCTTCTTCCTTCCATGGCAATTCCGCTCAAGTCTTCTTTCCTCAATGGTTCTTCTCACCAGTGGTTACGACTCTCAGAATCTACGCATCCTGTGGTACTCATCAAAAGGCGCTTCTCCGTCGCTAAGATAAGCATGAGTTTGCGAGCTGGCATCGTTGGCCTTCCTAATGTCGGCAAGTCCACGCTGTTCAACGCCGTC : GTTGAGAATGGAAAGGCTCAGGCTGCTAATTTTCCTTTTTGCACAATAGAGCCAAATGTAGGGATAGTCGCTGTCCCTGATACACGTCTCCATGTTCTTTCTGATATAAGCAAATCCAAACGAGCGGTCCCGGCTTCGATAGAGTTTGTTGATATTGCTGGACTTGTAAAGGGAGCCAGTCAAGGGGAG : GGCCTGGGGAATAAGTTCTTGTCACATATACGTGAAGTGGACTCCATACTTCAG : GTAGTACGTTGTTTTGAGGACAATGACATTGTTCATGTGAATGGGAAGGTTGAGCCAAAAGCTGATATTGATGTAATCAACTTGGAATTAATTTTCTCAGATTTGGATCAG : ATTGAGAAAAGAATGGAGAAACTCAAAAAAGGTAGAGCTAAAGATTCACAAGCTAAAGTAAAG : AAAAGTCTGCCTTGGAGAAAATACAACAAGCACTACTGGATGGAAAACCAGCACGATCAGTATCTTTGTCGGAGTTTGAAAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCTGAGTTAAATTCTGGTGTGGTAACTATTTCAGCGCAG : GTTGAGTCTGAGCTATCTGAACTTCCTTTAGAAGAAAGAATAGAATATTTGAAATCGCTTGGTGTCAATGAAAGTGGCCTTGGAAATCTCATCAGAGAAACTTATGGTCTCCTAGGGTTGCGTACATACTTCACTTCTGGCGAGAAG : GAAACCAAAGCATGGACCATCCTCACAG : GAATGACTGCTCCTCAAGCAGCTGGGGTTATTCACTCCGACTTTGAAAAGGGCTTCATCAGGGCAGAGACG : GTTGCTTACGATGACTTTGTTTCTGCTGGTTCTTTTGCAGCTGCAAGGGAGAAAGGACTG : TTGAGGTTAGAAGGAAAAGATTATGTTGTGCAAGAAGGGGATATAATGCTGTTCCGGTTCAATGTCTAATTGAAAAACAGTTGGTGAAGGAGATTTCACGAATTTTTATGTTGTGTTCACGGTTGTTTGAACCATTCAGATTTCTGAGACAGCAGATTTTGCTACAAGAGGTTTAATGGTGAAGCATATAATTTATGAGCTAGCCAGGTTTGTGAATTTTAAGGCACTGCAACTGGTGCTGATGAGATAGATTTATGGTTTTCACTCAGCTGCTACAAATCTCAATTTTTGGCTCGTCATGTAACATTCAATGTCCATAGGTCATTCGACTTTGTGTAATATTATTGTAATTCTTTCACTCCTTATCACCCTCCCCAATACGCCTTAGTTGGCTTCTGCAATATGATTTTTGCAATAAACGGAAAGAAGAAGATTCAAAAGTAGAACTTTTGTCAGTTTGATGAGTTCTGAATTGTCCAAACAGTCCGCATTCATATAATTCTATAGCTTGAAAGCTTAGCTGCATAA</gDNA_template>
            <first_frame> L  F  H  F  P  K  F  L  G  S  N  T  I  L  V  Q  L  F  G  *  F  S  N  L  H  V  A  S  S  L  S  *  T  R  E  I  F  V  V  V  A  R  R  *  I  A  A  T  L  C  V  P  L  N  K  H  F  N  L  L  V  V  K  W  R  E  W  L  A  L  S  F  F  L  P  W  Q  F  R  S  S  L  L  S  S  M  V  L  L  T  S  G  Y  D  S  Q  N  L  R  I  L  W  Y  S  S  K  G  A  S  P  S  L  R  *  A  *  V  C  E  L  A  S  L  A  F  L  M  S  A  S  P  R  C  S  T  P  S :   L  R  M  E  R  L  R  L  L  I  F  L  F  A  Q  *  S  Q  M  *  G  *  S  L  S  L  I  H  V  S  M  F  F  L  I  *  A  N  P  N  E  R  S  R  L  R  *  S  L  L  I  L  L  D  L  *  R  E  P  V  K  G  R :   A  W  G  I  S  S  C  H  I  Y  V  K  W  T  P  Y  F  R :   *  Y  V  V  L  R  T  M  T  L  F  M  *  M  G  R  L  S  Q  K  L  I  L  M  *  S  T  W  N  *  F  S  Q  I  W  I  R :   L  R  K  E  W  R  N  S  K  K  V  E  L  K  I  H  K  L  K  *  R :   K  V  C  L  G  E  N  T  T  S  T  T  G  W  K  T  S  T  I  S  I  F  V  G  V  *  K  G  C  Y  N  T  T  L  S  S  N  N  E  A  C  H  I  C  G  K  C  S  G  I  R  G  S  *  T  *  K  *  S  S  C  E  G  S  N  *  K  S  C  *  V  K  F  W  C  G  N  Y  F  S  A   : G  *  V  *  A  I  *  T  S  F  R  R  K  N  R  I  F  E  I  A  W  C  Q  *  K  W  P  W  K  S  H  Q  R  N  L  W  S  P  R  V  A  Y  I  L  H  F  W  R  E   : G  N  Q  S  M  D  H  P  H  R :   N  D  C  S  S  S  S  W  G  Y  S  L  R  L  *  K  G  L  H  Q  G  R  D   : G  C  L  R  *  L  C  F  C  W  F  F  C  S  C  K  G  E  R  T   : V  E  V  R  R  K  R  L  C  C  A  R  R  G  Y  N  A  V  P  V  Q  C  L  I  E  K  Q  L  V  K  E  I  S  R  I  F  M  L  C  S  R  L  F  E  P  F  R  F  L  R  Q  Q  I  L  L  Q  E  V  *  W  *  S  I  *  F  M  S  *  P  G  L  *  I  L  R  H  C  N  W  C  *  *  D  R  F  M  V  F  T  Q  L  L  Q  I  S  I  F  G  S  S  C  N  I  Q  C  P  *  V  I  R  L  C  V  I  L  L  *  F  F  H  S  L  S  P  S  P  I  R  L  S  W  L  L  Q  Y  D  F  C  N  K  R  K  E  E  D  S  K  V  E  L  L  S  V  *  *  V  L  N  C  P  N  S  P  H  S  Y  N  S  I  A  *  K  L  S  C  I  </first_frame>
            <second_frame>  C  F  I  F  P  N  F  W  A  Q  I  Q  F  W  C  N  Y  L  G  N  F  L  I  Y  M  *  R  R  R  *  V  K  P  E  K  Y  L  *  L  *  H  G  D  R  *  P  Q  R  C  V  Y  H  S  I  S  T  S  T  C  *  W  *  N  G  E  N  G  L  L  S  A  S  S  F  H  G  N  S  A  Q  V  F  F  P  Q  W  F  F  S  P  V  V  T  T  L  R  I  Y  A  S  C  G  T  H  Q  K  A  L  L  R  R  *  D  K  H  E  F  A  S  W  H  R  W  P  S  *  C  R  Q  V  H  A  V  Q  R  R   : R  *  E  W  K  G  S  G  C  *  F  S  F  L  H  N  R  A  K  C  R  D  S  R  C  P  *  Y  T  S  P  C  S  F  *  Y  K  Q  I  Q  T  S  G  P  G  F  D  R  V  C  *  Y  C  W  T  C  K  G  S  Q  S  R  G   : G  P  G  E  *  V  L  V  T  Y  T  *  S  G  L  H  T  S   : G  S  T  L  F  *  G  Q  *  H  C  S  C  E  W  E  G  *  A  K  S  *  Y  *  C  N  Q  L  G  I  N  F  L  R  F  G  S   : D  *  E  K  N  G  E  T  Q  K  R  *  S  *  R  F  T  S  *  S  K   : E  K  S  A  L  E  K  I  Q  Q  A  L  L  D  G  K  P  A  R  S  V  S  L  S  E  F  E  K  D  A  I  T  Q  L  C  L  L  T  M  K  P  V  I  F  V  A  N  V  A  E  S  E  V  A  E  P  E  N  N  P  H  V  K  E  V  I  K  K  A  A  E  L  N  S  G  V  V  T  I  S  A  Q  :  V  E  S  E  L  S  E  L  P  L  E  E  R  I  E  Y  L  K  S  L  G  V  N  E  S  G  L  G  N  L  I  R  E  T  Y  G  L  L  G  L  R  T  Y  F  T  S  G  E  K  :  E  T  K  A  W  T  I  L  T   : G  M  T  A  P  Q  A  A  G  V  I  H  S  D  F  E  K  G  F  I  R  A  E  T  :  V  A  Y  D  D  F  V  S  A  G  S  F  A  A  A  R  E  K  G  L  :  L  R  L  E  G  K  D  Y  V  V  Q  E  G  D  I  M  L  F  R  F  N  V  *  L  K  N  S  W  *  R  R  F  H  E  F  L  C  C  V  H  G  C  L  N  H  S  D  F  *  D  S  R  F  C  Y  K  R  F  N  G  E  A  Y  N  L  *  A  S  Q  V  C  E  F  *  G  T  A  T  G  A  D  E  I  D  L  W  F  S  L  S  C  Y  K  S  Q  F  L  A  R  H  V  T  F  N  V  H  R  S  F  D  F  V  *  Y  Y  C  N  S  F  T  P  Y  H  P  P  Q  Y  A  L  V  G  F  C  N  M  I  F  A  I  N  G  K  K  K  I  Q  K  *  N  F  C  Q  F  D  E  F  *  I  V  Q  T  V  R  I  H  I  I  L  *  L  E  S  L  A  A  * </second_frame>
            <third_frame>   V  S  F  S  Q  I  F  G  L  K  Y  N  F  G  A  I  I  W  V  I  F  *  F  T  C  S  V  V  A  E  L  N  P  R  N  I  C  S  C  S  T  A  I  D  S  R  N  A  V  C  T  T  Q  *  A  L  Q  L  A  S  G  K  M  A  R  M  A  C  S  Q  L  L  P  S  M  A  I  P  L  K  S  S  F  L  N  G  S  S  H  Q  W  L  R  L  S  E  S  T  H  P  V  V  L  I  K  R  R  F  S  V  A  K  I  S  M  S  L  R  A  G  I  V  G  L  P  N  V  G  K  S  T  L  F  N  A  V  :  V  E  N  G  K  A  Q  A  A  N  F  P  F  C  T  I  E  P  N  V  G  I  V  A  V  P  D  T  R  L  H  V  L  S  D  I  S  K  S  K  R  A  V  P  A  S  I  E  F  V  D  I  A  G  L  V  K  G  A  S  Q  G  E  :  G  L  G  N  K  F  L  S  H  I  R  E  V  D  S  I  L  Q  :  V  V  R  C  F  E  D  N  D  I  V  H  V  N  G  K  V  E  P  K  A  D  I  D  V  I  N  L  E  L  I  F  S  D  L  D  Q  :  I  E  K  R  M  E  K  L  K  K  G  R  A  K  D  S  Q  A  K  V  K  :  K  S  L  P  W  R  K  Y  N  K  H  Y  W  M  E  N  Q  H  D  Q  Y  L  C  R  S  L  K  R  M  L  *  H  N  F  V  F  *  Q  *  S  L  S  Y  L  W  Q  M  *  R  N  Q  R  *  L  N  L  K  I  I  L  M  *  R  K  *  L  K  K  L  L  S  *  I  L  V  W  *  L  F  Q  R  R :   L  S  L  S  Y  L  N  F  L  *  K  K  E  *  N  I  *  N  R  L  V  S  M  K  V  A  L  E  I  S  S  E  K  L  M  V  S  *  G  C  V  H  T  S  L  L  A  R  R :   K  P  K  H  G  P  S  S  Q  :  E  *  L  L  L  K  Q  L  G  L  F  T  P  T  L  K  R  A  S  S  G  Q  R  R :   L  L  T  M  T  L  F  L  L  V  L  L  Q  L  Q  G  R  K  D  C :   *  G  *  K  E  K  I  M  L  C  K  K  G  I  *  C  C  S  G  S  M  S  N  *  K  T  V  G  E  G  D  F  T  N  F  Y  V  V  F  T  V  V  *  T  I  Q  I  S  E  T  A  D  F  A  T  R  G  L  M  V  K  H  I  I  Y  E  L  A  R  F  V  N  F  K  A  L  Q  L  V  L  M  R  *  I  Y  G  F  H  S  A  A  T  N  L  N  F  W  L  V  M  *  H  S  M  S  I  G  H  S  T  L  C  N  I  I  V  I  L  S  L  L  I  T  L  P  N  T  P  *  L  A  S  A  I  *  F  L  Q  *  T  E  R  R  R  F  K  S  R  T  F  V  S  L  M  S  S  E  L  S  K  Q  S  A  F  I  *  F  Y  S  L  K  A  *  L  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37222" stop="36977"/>
                    <exon start="35991" stop="35803"/>
                    <exon start="35676" stop="35623"/>
                    <exon start="34315" stop="34205"/>
                    <exon start="33828" stop="33766"/>
                    <exon start="33607" stop="33515"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>753</number_coding_nucleotides>
                  <number_encoded_amino_acids>251</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALQLASGKMARMACSQLLPSMAIPLKSSFLNGSSHQWLRLSESTHPVVLIKRRFSVAKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDTRLHVLSDISKSKRAVPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVEPKADIDVINLELIFSDLDQIEKRMEKLKKGRAKDSQAKVKKSLPWRKYNKHYWMENQHDQYLCRSLKRML*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30348" stop="30303"/>
                    <exon start="29471" stop="29296"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LCFCWFFCSCKGERTVEVRRKRLCCARRGYNAVPVQCLIEKQLVKEISRIFMLCSRLFEPFRFLRQQILLQEV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="30043" e_stop="29367"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30043" e_stop="29367" e_length="677"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30043" stop="29367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30043" stop="29385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30043" stop="29392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30043" stop="29442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30043" stop="29482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236379" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACCTGAAATGTCTCGAGGAATCAGTTAAAACTTAAGACTCGTGATTGCAGTGTAATTTCAAAAATAGATAAATATTTAAAGTAACGGTAAATAAGCTAAATATTTCAATTTTAGCTGTTAAAAAAGTTTATTTTAAAAAAAAAACCCTTAAAATAACCTTAGAGTCTATCTTTGGCTTGTAAGCACATGCAGTGGTTACATTAAAATACCTTCCCGAAGCAAAAAGCTTAGCCAAACACAAATAAAGAATCCATGGTTGTTTTTGGTGTCATTTCCTGATTATTGTCAATTGGAACCTTTTTAAATTTTTTAGTGAACCATTATCATCTCAATAACCTTCTTACTTTGGCTCCAGCACTTCAAAATTAAATGTTCATTGCCTCCCCTATCCCCAAATTGTAATGAGGTTGCTAATCTCATGTAACTTTTACTAGTAAGTAGTTTTCTTTCACAAAGATAATTACTTGTGTAGTAGAATGTAAACGGTGCTTCTATGTGAGCACTAAGTCTACTGACCCGTGCAAACAAGAGAATAGATCAAGCTGGTTACAGGATTTATCTGTGTATGCAGTTGAGGTTAGAAGGAAAAGATTATGTTGTGCAAGAAGGGGATATAATGCTGTTCCGGTTCAATGTCTAATTGAAAAACAGTTGGTGAAGGAGATTTCACGAATTT</gDNA_template>
            <first_frame> Y  L  K  C  L  E  E  S  V  K  T  *  D  S  *  L  Q  C  N  F  K  N  R  *  I  F  K  V  T  V  N  K  L  N  I  S  I  L  A  V  K  K  V  Y  F  K  K  K  T  L  K  I  T  L  E  S  I  F  G  L  *  A  H  A  V  V  T  L  K  Y  L  P  E  A  K  S  L  A  K  H  K  *  R  I  H  G  C  F  W  C  H  F  L  I  I  V  N  W  N  L  F  K  F  F  S  E  P  L  S  S  Q  *  P  S  Y  F  G  S  S  T  S  K  L  N  V  H  C  L  P  Y  P  Q  I  V  M  R  L  L  I  S  C  N  F  Y  *  *  V  V  F  F  H  K  D  N  Y  L  C  S  R  M  *  T  V  L  L  C  E  H  *  V  Y  *  P  V  Q  T  R  E  *  I  K  L  V  T  G  F  I  C  V  C  S  *  G  *  K  E  K  I  M  L  C  K  K  G  I  *  C  C  S  G  S  M  S  N  *  K  T  V  G  E  G  D  F  T  N   </first_frame>
            <second_frame>  T  *  N  V  S  R  N  Q  L  K  L  K  T  R  D  C  S  V  I  S  K  I  D  K  Y  L  K  *  R  *  I  S  *  I  F  Q  F  *  L  L  K  K  F  I  L  K  K  K  P  L  K  *  P  *  S  L  S  L  A  C  K  H  M  Q  W  L  H  *  N  T  F  P  K  Q  K  A  *  P  N  T  N  K  E  S  M  V  V  F  G  V  I  S  *  L  L  S  I  G  T  F  L  N  F  L  V  N  H  Y  H  L  N  N  L  L  T  L  A  P  A  L  Q  N  *  M  F  I  A  S  P  I  P  K  L  *  *  G  C  *  S  H  V  T  F  T  S  K  *  F  S  F  T  K  I  I  T  C  V  V  E  C  K  R  C  F  Y  V  S  T  K  S  T  D  P  C  K  Q  E  N  R  S  S  W  L  Q  D  L  S  V  Y  A  V  E  V  R  R  K  R  L  C  C  A  R  R  G  Y  N  A  V  P  V  Q  C  L  I  E  K  Q  L  V  K  E  I  S  R  I  </second_frame>
            <third_frame>   P  E  M  S  R  G  I  S  *  N  L  R  L  V  I  A  V  *  F  Q  K  *  I  N  I  *  S  N  G  K  *  A  K  Y  F  N  F  S  C  *  K  S  L  F  *  K  K  N  P  *  N  N  L  R  V  Y  L  W  L  V  S  T  C  S  G  Y  I  K  I  P  S  R  S  K  K  L  S  Q  T  Q  I  K  N  P  W  L  F  L  V  S  F  P  D  Y  C  Q  L  E  P  F  *  I  F  *  *  T  I  I  I  S  I  T  F  L  L  W  L  Q  H  F  K  I  K  C  S  L  P  P  L  S  P  N  C  N  E  V  A  N  L  M  *  L  L  L  V  S  S  F  L  S  Q  R  *  L  L  V  *  *  N  V  N  G  A  S  M  *  A  L  S  L  L  T  R  A  N  K  R  I  D  Q  A  G  Y  R  I  Y  L  C  M  Q  L  R  L  E  G  K  D  Y  V  V  Q  E  G  D  I  M  L  F  R  F  N  V  *  L  K  N  S  W  *  R  R  F  H  E  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29601" stop="29368"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSFTKIITCVVECKRCFYVSTKSTDPCKQENRSSWLQDLSVYAVEVRRKRLCCARRGYNAVPVQCLIEKQLVKEISRI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="35794" e_stop="35623"/>
            <exon e_start="34315" e_stop="34205"/>
            <exon e_start="33828" e_stop="33766"/>
            <exon e_start="33617" e_stop="33241"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35794" e_stop="35623" e_length="172"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="35622" i_stop="34316" i_length="1307"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34315" e_stop="34205" e_length="111"/>
          </exon>
          <intron i_serial="2" don_prob="0.950" acc_prob="0.000">
            <gDNA_intron_boundary i_start="34204" i_stop="33829" i_length="376"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33828" e_stop="33766" e_length="63"/>
          </exon>
          <intron i_serial="3" don_prob="0.971" acc_prob="0.989">
            <gDNA_intron_boundary i_start="33765" i_stop="33618" i_length="148"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="33617" e_stop="33241" e_length="377"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35794" stop="35623"/>
              <exon start="34315" stop="34205"/>
              <exon start="33828" stop="33766"/>
              <exon start="33617" stop="33241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340487" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAATAACCTAAAGTTTCCTAATATCAATTATTAGTCATGTTTTCACTTATTGTATCATTGCATCAGTGGCATTATAAATTGAAGATACAACAATTTGTTAAATATTTTCTATGGCAGGGCCTGGGGAATAAGTTCTTGTCACATATACGTGAAGTGGACTCCATACTTCAG : GTAGTACGTTGTTTTGAGGACAATGACATTGTTCATGTGAATGGGAAGGTTGAGCCAAAAGCTGATATTGATGTAATCAACTTGGAATTAATTTTCTCAGATTTGGATCAG : ATTGAGAAAAGAATGGAGAAACTCAAAAAAGGTAGAGCTAAAGATTCACAAGCTAAAGTAAAG : GAGGAAGCAGAAAAGTCTGCCTTGGAGAAAATACAACAAGCACTACTGGATGGAAAACCAGCACGATCAGTATCTTTGTCGGAGTTTGAAAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCTGAGTTAAATTCTGGTGTGGTAACTATTTCAGCGCAGGTCAGTTGACATCTTTCACTTTTCCCTTTTGTATTTGAATCAATCAAAATTCATGCTTATTTCATTTCAGGGGGAGATCTTTATCCTAATGCTCTATTGGAAATTACTTTAATTGTCATATC</gDNA_template>
            <first_frame> S  I  T  *  S  F  L  I  S  I  I  S  H  V  F  T  Y  C  I  I  A  S  V  A  L  *  I  E  D  T  T  I  C  *  I  F  S  M  A  G  P  G  E  *  V  L  V  T  Y  T  *  S  G  L  H  T  S   : G  S  T  L  F  *  G  Q  *  H  C  S  C  E  W  E  G  *  A  K  S  *  Y  *  C  N  Q  L  G  I  N  F  L  R  F  G  S   : D  *  E  K  N  G  E  T  Q  K  R  *  S  *  R  F  T  S  *  S  K   : G  G  S  R  K  V  C  L  G  E  N  T  T  S  T  T  G  W  K  T  S  T  I  S  I  F  V  G  V  *  K  G  C  Y  N  T  T  L  S  S  N  N  E  A  C  H  I  C  G  K  C  S  G  I  R  G  S  *  T  *  K  *  S  S  C  E  G  S  N  *  K  S  C  *  V  K  F  W  C  G  N  Y  F  S  A  G  Q  L  T  S  F  T  F  P  F  C  I  *  I  N  Q  N  S  C  L  F  H  F  R  G  R  S  L  S  *  C  S  I  G  N  Y  F  N  C  H  I </first_frame>
            <second_frame>  Q  *  P  K  V  S  *  Y  Q  L  L  V  M  F  S  L  I  V  S  L  H  Q  W  H  Y  K  L  K  I  Q  Q  F  V  K  Y  F  L  W  Q  G  L  G  N  K  F  L  S  H  I  R  E  V  D  S  I  L  Q  :  V  V  R  C  F  E  D  N  D  I  V  H  V  N  G  K  V  E  P  K  A  D  I  D  V  I  N  L  E  L  I  F  S  D  L  D  Q  :  I  E  K  R  M  E  K  L  K  K  G  R  A  K  D  S  Q  A  K  V  K  :  E  E  A  E  K  S  A  L  E  K  I  Q  Q  A  L  L  D  G  K  P  A  R  S  V  S  L  S  E  F  E  K  D  A  I  T  Q  L  C  L  L  T  M  K  P  V  I  F  V  A  N  V  A  E  S  E  V  A  E  P  E  N  N  P  H  V  K  E  V  I  K  K  A  A  E  L  N  S  G  V  V  T  I  S  A  Q  V  S  *  H  L  S  L  F  P  F  V  F  E  S  I  K  I  H  A  Y  F  I  S  G  G  D  L  Y  P  N  A  L  L  E  I  T  L  I  V  I   </second_frame>
            <third_frame>   N  N  L  K  F  P  N  I  N  Y  *  S  C  F  H  L  L  Y  H  C  I  S  G  I  I  N  *  R  Y  N  N  L  L  N  I  F  Y  G  R  A  W  G  I  S  S  C  H  I  Y  V  K  W  T  P  Y  F  R :   *  Y  V  V  L  R  T  M  T  L  F  M  *  M  G  R  L  S  Q  K  L  I  L  M  *  S  T  W  N  *  F  S  Q  I  W  I  R :   L  R  K  E  W  R  N  S  K  K  V  E  L  K  I  H  K  L  K  *  R :   R  K  Q  K  S  L  P  W  R  K  Y  N  K  H  Y  W  M  E  N  Q  H  D  Q  Y  L  C  R  S  L  K  R  M  L  *  H  N  F  V  F  *  Q  *  S  L  S  Y  L  W  Q  M  *  R  N  Q  R  *  L  N  L  K  I  I  L  M  *  R  K  *  L  K  K  L  L  S  *  I  L  V  W  *  L  F  Q  R  R  S  V  D  I  F  H  F  S  L  L  Y  L  N  Q  S  K  F  M  L  I  S  F  Q  G  E  I  F  I  L  M  L  Y  W  K  L  L  *  L  S  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35772" stop="35623"/>
                    <exon start="34315" stop="34205"/>
                    <exon start="33828" stop="33766"/>
                    <exon start="33617" stop="33354"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>585</number_coding_nucleotides>
                  <number_encoded_amino_acids>195</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YQLLVMFSLIVSLHQWHYKLKIQQFVKYFLWQGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVEPKADIDVINLELIFSDLDQIEKRMEKLKKGRAKDSQAKVKEEAEKSALEKIQQALLDGKPARSVSLSEFEKDAITQLCLLTMKPVIFVANVAESEVAEPENNPHVKEVIKKAAELNSGVVTISAQVS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="50118" PGL_stop="52454"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50118" e_stop="50290"/>
            <exon e_start="50379" e_stop="50564"/>
            <exon e_start="51310" e_stop="51489"/>
            <exon e_start="52234" e_stop="52454"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.590" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.729" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.124" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50118" e_stop="50290" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.590" acc_prob="0.998">
            <gDNA_intron_boundary i_start="50291" i_stop="50378" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50379" e_stop="50564" e_length="186"/>
          </exon>
          <intron i_serial="2" don_prob="0.729" acc_prob="0.995">
            <gDNA_intron_boundary i_start="50565" i_stop="51309" i_length="745"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51310" e_stop="51489" e_length="180"/>
          </exon>
          <intron i_serial="3" don_prob="0.955" acc_prob="0.124">
            <gDNA_intron_boundary i_start="51490" i_stop="52233" i_length="744"/>
          </intron>
          <exon e_serial="4" e_score="0.990">
            <gDNA_exon_boundary e_start="52234" e_stop="52454" e_length="221"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50118" stop="50290"/>
              <exon start="50379" stop="50564"/>
              <exon start="51310" stop="51489"/>
              <exon start="52234" stop="52427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50139" stop="50290"/>
              <exon start="50379" stop="50564"/>
              <exon start="51310" stop="51489"/>
              <exon start="52234" stop="52454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340103" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAACACTCATAAAACAGAGCCACTGTTCTTCTTTACGCAGAGGAGCTAGCAAGATGATTACTGGCGGAAGAAGTTTGATTTCTTCACAGCCGGCGTTTTCAAATGATGCAAAGAAGCTTCTCGTATGCACAGGAAACACCGTTTCTATTTTTAGCACCTCCACAGGCTTACAG : ATTGCTGAATTGGAAGGTCATAGGGGATTGGTAACATCGGTGGTGGTAGTACCATCTACTACTCCGGCAGGCAAACTATTGTGCTACTGCTGGACTTCATCTGAGGATGGTACTATTAAATATTGGGACTTTTCCGTGCCGGAGCTAATGAGAAGTATTGATGTTAAGTTGCCCATTTACTCAATG : GTAATTCCAGGTTTATCATCAGAACTCAGAGAGAGTAGCGAAAAGCCTTCTGATCTTTTTGCATATGTGTCTGTCATAGTGTTGAAAGAACAGCTGGGAGGGAGCTGTGCTTTATGGTGGCAGATAAGGAAGTGTAACTTAACTAAATGTACTTTGGTTGGTGGAGTGACTCTGGCTGAG : AGTAAAAACGCACTATCTATAACATTAAGCTGCTCTGGAAGATACATGGGCGTCTGTGACAAGCGCAAGCTTCGCATTTGGGAAATACCAACTAAAGATTCTGATCATTCAGTGCTTCAGAACATCAGATTACATCATACGAAAACCCTGAGCACTCTAGCTTTTCATCCAACAGATAGAATAGTTTCAGCTGGAGATGTAACAGGAAGGATCTTAATATG</gDNA_template>
            <first_frame> *  H  S  *  N  R  A  T  V  L  L  Y  A  E  E  L  A  R  *  L  L  A  E  E  V  *  F  L  H  S  R  R  F  Q  M  M  Q  R  S  F  S  Y  A  Q  E  T  P  F  L  F  L  A  P  P  Q  A  Y  R :   L  L  N  W  K  V  I  G  D  W  *  H  R  W  W  *  Y  H  L  L  L  R  Q  A  N  Y  C  A  T  A  G  L  H  L  R  M  V  L  L  N  I  G  T  F  P  C  R  S  *  *  E  V  L  M  L  S  C  P  F  T  Q  W :   *  F  Q  V  Y  H  Q  N  S  E  R  V  A  K  S  L  L  I  F  L  H  M  C  L  S  *  C  *  K  N  S  W  E  G  A  V  L  Y  G  G  R  *  G  S  V  T  *  L  N  V  L  W  L  V  E  *  L  W  L  R :   V  K  T  H  Y  L  *  H  *  A  A  L  E  D  T  W  A  S  V  T  S  A  S  F  A  F  G  K  Y  Q  L  K  I  L  I  I  Q  C  F  R  T  S  D  Y  I  I  R  K  P  *  A  L  *  L  F  I  Q  Q  I  E  *  F  Q  L  E  M  *  Q  E  G  S  *  Y  </first_frame>
            <second_frame>  N  T  H  K  T  E  P  L  F  F  F  T  Q  R  S  *  Q  D  D  Y  W  R  K  K  F  D  F  F  T  A  G  V  F  K  *  C  K  E  A  S  R  M  H  R  K  H  R  F  Y  F  *  H  L  H  R  L  T   : D  C  *  I  G  R  S  *  G  I  G  N  I  G  G  G  S  T  I  Y  Y  S  G  R  Q  T  I  V  L  L  L  D  F  I  *  G  W  Y  Y  *  I  L  G  L  F  R  A  G  A  N  E  K  Y  *  C  *  V  A  H  L  L  N   : G  N  S  R  F  I  I  R  T  Q  R  E  *  R  K  A  F  *  S  F  C  I  C  V  C  H  S  V  E  R  T  A  G  R  E  L  C  F  M  V  A  D  K  E  V  *  L  N  *  M  Y  F  G  W  W  S  D  S  G  *   : E  *  K  R  T  I  Y  N  I  K  L  L  W  K  I  H  G  R  L  *  Q  A  Q  A  S  H  L  G  N  T  N  *  R  F  *  S  F  S  A  S  E  H  Q  I  T  S  Y  E  N  P  E  H  S  S  F  S  S  N  R  *  N  S  F  S  W  R  C  N  R  K  D  L  N  M </second_frame>
            <third_frame>   T  L  I  K  Q  S  H  C  S  S  L  R  R  G  A  S  K  M  I  T  G  G  R  S  L  I  S  S  Q  P  A  F  S  N  D  A  K  K  L  L  V  C  T  G  N  T  V  S  I  F  S  T  S  T  G  L  Q  :  I  A  E  L  E  G  H  R  G  L  V  T  S  V  V  V  V  P  S  T  T  P  A  G  K  L  L  C  Y  C  W  T  S  S  E  D  G  T  I  K  Y  W  D  F  S  V  P  E  L  M  R  S  I  D  V  K  L  P  I  Y  S  M  :  V  I  P  G  L  S  S  E  L  R  E  S  S  E  K  P  S  D  L  F  A  Y  V  S  V  I  V  L  K  E  Q  L  G  G  S  C  A  L  W  W  Q  I  R  K  C  N  L  T  K  C  T  L  V  G  G  V  T  L  A  E  :  S  K  N  A  L  S  I  T  L  S  C  S  G  R  Y  M  G  V  C  D  K  R  K  L  R  I  W  E  I  P  T  K  D  S  D  H  S  V  L  Q  N  I  R  L  H  H  T  K  T  L  S  T  L  A  F  H  P  T  D  R  I  V  S  A  G  D  V  T  G  R  I  L  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50120" stop="50290"/>
                    <exon start="50379" stop="50564"/>
                    <exon start="51310" stop="51489"/>
                    <exon start="52234" stop="52452"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>756</number_coding_nucleotides>
                  <number_encoded_amino_acids>252</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLIKQSHCSSLRRGASKMITGGRSLISSQPAFSNDAKKLLVCTGNTVSIFSTSTGLQIAELEGHRGLVTSVVVVPSTTPAGKLLCYCWTSSEDGTIKYWDFSVPELMRSIDVKLPIYSMVIPGLSSELRESSEKPSDLFAYVSVIVLKEQLGGSCALWWQIRKCNLTKCTLVGGVTLAESKNALSITLSCSGRYMGVCDKRKLRIWEIPTKDSDHSVLQNIRLHHTKTLSTLAFHPTDRIVSAGDVTGRILI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="56679" PGL_stop="60910"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56679" e_stop="56716"/>
            <exon e_start="57006" e_stop="57135"/>
            <exon e_start="57525" e_stop="57657"/>
            <exon e_start="58686" e_stop="58852"/>
            <exon e_start="59291" e_stop="59483"/>
            <exon e_start="60285" e_stop="60910"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.545" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56679" e_stop="56716" e_length="38"/>
          </exon>
          <intron i_serial="1" don_prob="0.545" acc_prob="0.997">
            <gDNA_intron_boundary i_start="56717" i_stop="57005" i_length="289"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57006" e_stop="57135" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="57136" i_stop="57524" i_length="389"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="57525" e_stop="57657" e_length="133"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.994">
            <gDNA_intron_boundary i_start="57658" i_stop="58685" i_length="1028"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="58686" e_stop="58852" e_length="167"/>
          </exon>
          <intron i_serial="4" don_prob="0.962" acc_prob="0.979">
            <gDNA_intron_boundary i_start="58853" i_stop="59290" i_length="438"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="59291" e_stop="59483" e_length="193"/>
          </exon>
          <intron i_serial="5" don_prob="0.987" acc_prob="0.999">
            <gDNA_intron_boundary i_start="59484" i_stop="60284" i_length="801"/>
          </intron>
          <exon e_serial="6" e_score="0.994">
            <gDNA_exon_boundary e_start="60285" e_stop="60910" e_length="626"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56679" stop="56716"/>
              <exon start="57006" stop="57135"/>
              <exon start="57525" stop="57657"/>
              <exon start="58686" stop="58852"/>
              <exon start="59291" stop="59474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56679" stop="56716"/>
              <exon start="57006" stop="57135"/>
              <exon start="57525" stop="57657"/>
              <exon start="58686" stop="58852"/>
              <exon start="59291" stop="59442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56680" stop="56716"/>
              <exon start="57006" stop="57135"/>
              <exon start="57525" stop="57657"/>
              <exon start="58686" stop="58852"/>
              <exon start="59291" stop="59441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56688" stop="56716"/>
              <exon start="57006" stop="57135"/>
              <exon start="57525" stop="57657"/>
              <exon start="58686" stop="58852"/>
              <exon start="59291" stop="59330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57077" stop="57135"/>
              <exon start="57525" stop="57657"/>
              <exon start="58686" stop="58785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58770" stop="58852"/>
              <exon start="59291" stop="59483"/>
              <exon start="60285" stop="60910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703779" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACGCTGGATGGACATGCCATTCTGTTGGTTCCTATAA : GAAAAAGCCAATGACAGCTGCTGCCTTTTCTGGAGATGGTTCTGTTCTGGCTGTAGCTGCAGAAAAAGTTATTACATTGTGGGATCCGGAGAGGAATATTCTTGTAGCTACAGTTGGGGAGAGTCTTGAG : CCAATCTCTTCCTTAGCATTTATTGGGAAGTCAGAGTATGTGGTAACCACATCGCAAGGTTCTAAGGCTCAAGTATCAGTGTGGAGCATGTCAAAGCTGTCTGTATCATGGTCTTACAAACTTAAGATAGAAG : CTGTAACTTGTGCGATGGATGATTCCTTGTTTGCCGTCCTGGCCCTTCTCCCAAAGCCAGTTGGACCTGTGATGTCTAATGAAGCCACAACTCTGGATGGCGATGGAGTGATCTTGTTATTCAGGGCCACAGATCATGTTCCCGTAGGGATCTGGTTTGTAAGAAAG : GCAAAAGGTGCTTCACTTGCTTTCATTCGCGGAAGTCCTAAGTCAGAGGATGATGTTACTGATGGCAGATCAGTGCAGTTGCTATTAGCTTACCTCAGCGTTGATCATGAATATATGCTTTTTGATCCACTCGACGGCCACACCCATATACATAAGATAAGCCGAGGAAATCTTGCTGATCTTGAGGAAACAG : GGAAGTTCGGATATGCATCTCTGTACGGGGACCTACCAGACTTTAGCTTAGAGAGAAAACAAGCTGCATCGATCACATCAGTACCATCAGAAAGATATTGGGAGACGCTATTCAGTGGACCATCTCACAATCTTCCTCCTCTTGCTAAATTGTGTTCCACATTCCTGGAATCATTACTACAGAAGAGTAGTGCAGTTGAGTGATTGGCAGTAGTGTCCGGTTGAGCTTTGTTGCAAGGCAGACTTGCTAATCTATGCTCATCGATGAAACGACAACATTGTTGTTAGGCTTGATCCCATTGTAGCCGAGAGAGAGCTGCCTGACATGCACATGCACATGCACATAGTAATACTAGCTCGAAAGTGTGAACAGTGGGGTCGACTTATAATCTGGTCTAAGAACGAGCCAGCCCGTTCAGTTAAAGCTTTCGAGTTCAAGAAAAAGATGCCCTGATCGAGTGGGTTTAAAATTTTGGTAGCACGATTTGATGTGTCGTCTGGATATTGAATTTTTTGTAGCTTGCAACTTATTGAGCCTGCAGGGCTAAGTAGGCATACTCAATACTGAATAGATGTTCTTTTTTGACAATATTTGGTCATGTGTTGTGTTTAATTATAACATTTATA</gDNA_template>
            <first_frame> N  A  G  W  T  C  H  S  V  G  S  Y  K :   K  K  P  M  T  A  A  A  F  S  G  D  G  S  V  L  A  V  A  A  E  K  V  I  T  L  W  D  P  E  R  N  I  L  V  A  T  V  G  E  S  L  E  :  P  I  S  S  L  A  F  I  G  K  S  E  Y  V  V  T  T  S  Q  G  S  K  A  Q  V  S  V  W  S  M  S  K  L  S  V  S  W  S  Y  K  L  K  I  E   : A  V  T  C  A  M  D  D  S  L  F  A  V  L  A  L  L  P  K  P  V  G  P  V  M  S  N  E  A  T  T  L  D  G  D  G  V  I  L  L  F  R  A  T  D  H  V  P  V  G  I  W  F  V  R  K  :  A  K  G  A  S  L  A  F  I  R  G  S  P  K  S  E  D  D  V  T  D  G  R  S  V  Q  L  L  L  A  Y  L  S  V  D  H  E  Y  M  L  F  D  P  L  D  G  H  T  H  I  H  K  I  S  R  G  N  L  A  D  L  E  E  T   : G  K  F  G  Y  A  S  L  Y  G  D  L  P  D  F  S  L  E  R  K  Q  A  A  S  I  T  S  V  P  S  E  R  Y  W  E  T  L  F  S  G  P  S  H  N  L  P  P  L  A  K  L  C  S  T  F  L  E  S  L  L  Q  K  S  S  A  V  E  *  L  A  V  V  S  G  *  A  L  L  Q  G  R  L  A  N  L  C  S  S  M  K  R  Q  H  C  C  *  A  *  S  H  C  S  R  E  R  A  A  *  H  A  H  A  H  A  H  S  N  T  S  S  K  V  *  T  V  G  S  T  Y  N  L  V  *  E  R  A  S  P  F  S  *  S  F  R  V  Q  E  K  D  A  L  I  E  W  V  *  N  F  G  S  T  I  *  C  V  V  W  I  L  N  F  L  *  L  A  T  Y  *  A  C  R  A  K  *  A  Y  S  I  L  N  R  C  S  F  L  T  I  F  G  H  V  L  C  L  I  I  T  F  I </first_frame>
            <second_frame>  T  L  D  G  H  A  I  L  L  V  P  I   : R  K  S  Q  *  Q  L  L  P  F  L  E  M  V  L  F  W  L  *  L  Q  K  K  L  L  H  C  G  I  R  R  G  I  F  L  *  L  Q  L  G  R  V  L  S :   Q  S  L  P  *  H  L  L  G  S  Q  S  M  W  *  P  H  R  K  V  L  R  L  K  Y  Q  C  G  A  C  Q  S  C  L  Y  H  G  L  T  N  L  R  *  K  :  L  *  L  V  R  W  M  I  P  C  L  P  S  W  P  F  S  Q  S  Q  L  D  L  *  C  L  M  K  P  Q  L  W  M  A  M  E  *  S  C  Y  S  G  P  Q  I  M  F  P  *  G  S  G  L  *  E  R :   Q  K  V  L  H  L  L  S  F  A  E  V  L  S  Q  R  M  M  L  L  M  A  D  Q  C  S  C  Y  *  L  T  S  A  L  I  M  N  I  C  F  L  I  H  S  T  A  T  P  I  Y  I  R  *  A  E  E  I  L  L  I  L  R  K  Q  :  G  S  S  D  M  H  L  C  T  G  T  Y  Q  T  L  A  *  R  E  N  K  L  H  R  S  H  Q  Y  H  Q  K  D  I  G  R  R  Y  S  V  D  H  L  T  I  F  L  L  L  L  N  C  V  P  H  S  W  N  H  Y  Y  R  R  V  V  Q  L  S  D  W  Q  *  C  P  V  E  L  C  C  K  A  D  L  L  I  Y  A  H  R  *  N  D  N  I  V  V  R  L  D  P  I  V  A  E  R  E  L  P  D  M  H  M  H  M  H  I  V  I  L  A  R  K  C  E  Q  W  G  R  L  I  I  W  S  K  N  E  P  A  R  S  V  K  A  F  E  F  K  K  K  M  P  *  S  S  G  F  K  I  L  V  A  R  F  D  V  S  S  G  Y  *  I  F  C  S  L  Q  L  I  E  P  A  G  L  S  R  H  T  Q  Y  *  I  D  V  L  F  *  Q  Y  L  V  M  C  C  V  *  L  *  H  L   </second_frame>
            <third_frame>   R  W  M  D  M  P  F  C  W  F  L  *  :  E  K  A  N  D  S  C  C  L  F  W  R  W  F  C  S  G  C  S  C  R  K  S  Y  Y  I  V  G  S  G  E  E  Y  S  C  S  Y  S  W  G  E  S  *   : A  N  L  F  L  S  I  Y  W  E  V  R  V  C  G  N  H  I  A  R  F  *  G  S  S  I  S  V  E  H  V  K  A  V  C  I  M  V  L  Q  T  *  D  R  S :   C  N  L  C  D  G  *  F  L  V  C  R  P  G  P  S  P  K  A  S  W  T  C  D  V  *  *  S  H  N  S  G  W  R  W  S  D  L  V  I  Q  G  H  R  S  C  S  R  R  D  L  V  C  K  K   : G  K  R  C  F  T  C  F  H  S  R  K  S  *  V  R  G  *  C  Y  *  W  Q  I  S  A  V  A  I  S  L  P  Q  R  *  S  *  I  Y  A  F  *  S  T  R  R  P  H  P  Y  T  *  D  K  P  R  K  S  C  *  S  *  G  N  R :   E  V  R  I  C  I  S  V  R  G  P  T  R  L  *  L  R  E  K  T  S  C  I  D  H  I  S  T  I  R  K  I  L  G  D  A  I  Q  W  T  I  S  Q  S  S  S  S  C  *  I  V  F  H  I  P  G  I  I  T  T  E  E  *  C  S  *  V  I  G  S  S  V  R  L  S  F  V  A  R  Q  T  C  *  S  M  L  I  D  E  T  T  T  L  L  L  G  L  I  P  L  *  P  R  E  S  C  L  T  C  T  C  T  C  T  *  *  Y  *  L  E  S  V  N  S  G  V  D  L  *  S  G  L  R  T  S  Q  P  V  Q  L  K  L  S  S  S  R  K  R  C  P  D  R  V  G  L  K  F  W  *  H  D  L  M  C  R  L  D  I  E  F  F  V  A  C  N  L  L  S  L  Q  G  *  V  G  I  L  N  T  E  *  M  F  F  F  D  N  I  W  S  C  V  V  F  N  Y  N  I  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56679" stop="56716"/>
                    <exon start="57006" stop="57135"/>
                    <exon start="57525" stop="57657"/>
                    <exon start="58686" stop="58852"/>
                    <exon start="59291" stop="59483"/>
                    <exon start="60285" stop="60487"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>861</number_coding_nucleotides>
                  <number_encoded_amino_acids>287</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NAGWTCHSVGSYKKKPMTAAAFSGDGSVLAVAAEKVITLWDPERNILVATVGESLEPISSLAFIGKSEYVVTTSQGSKAQVSVWSMSKLSVSWSYKLKIEAVTCAMDDSLFAVLALLPKPVGPVMSNEATTLDGDGVILLFRATDHVPVGIWFVRKAKGASLAFIRGSPKSEDDVTDGRSVQLLLAYLSVDHEYMLFDPLDGHTHIHKISRGNLADLEETGKFGYASLYGDLPDFSLERKQAASITSVPSERYWETLFSGPSHNLPPLAKLCSTFLESLLQKSSAVE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="63203" PGL_stop="63712"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63203" e_stop="63712"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="63203" e_stop="63712" e_length="510"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63203" stop="63712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63325" stop="63620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63325" stop="63620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688226" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAAATGTCGGTCATGCTATGCAATTAGTTGATAAAATGGAGGAATATGGATATCCAACAAATACTGTGACTTACAATTCTCTTATAAGAGGACTTTGTATGAGGGGGAACCTGAACAAGAGCCTGCAATTTGTCGAAAAGTTGATTCAGAAAGGGTTGGTACCAAATGCATATACGTACTCTATATTGCTTGAGGCTAGTTATAAAGAAAAAGGGGTTAATGAAGCAATGTTACTTTTAGACAATATTATTGCCAAGGGTGGAAAGCCTAATTTGGTTAGTTACAATGTTCTCTTAACTGGGCTGTGCAAAGAAGGAAGAATAGATGAAGCTAAACAATTCTTTAGAAACTTGCCATCAAAAGGGTTTAATCCTAACGTTGTCAGCTATAATATCTTGTTGAGGAGCTTGTGTTTTGAAGGACGTTGGGAGGAAGCGAATGAGTTTCTGGCAGAGATGGTTGGAGAAGATCGTTCTCCATCGATTGTAACGTACAATATATTGATCAGT</gDNA_template>
            <first_frame> G  N  V  G  H  A  M  Q  L  V  D  K  M  E  E  Y  G  Y  P  T  N  T  V  T  Y  N  S  L  I  R  G  L  C  M  R  G  N  L  N  K  S  L  Q  F  V  E  K  L  I  Q  K  G  L  V  P  N  A  Y  T  Y  S  I  L  L  E  A  S  Y  K  E  K  G  V  N  E  A  M  L  L  L  D  N  I  I  A  K  G  G  K  P  N  L  V  S  Y  N  V  L  L  T  G  L  C  K  E  G  R  I  D  E  A  K  Q  F  F  R  N  L  P  S  K  G  F  N  P  N  V  V  S  Y  N  I  L  L  R  S  L  C  F  E  G  R  W  E  E  A  N  E  F  L  A  E  M  V  G  E  D  R  S  P  S  I  V  T  Y  N  I  L  I  S </first_frame>
            <second_frame>  E  M  S  V  M  L  C  N  *  L  I  K  W  R  N  M  D  I  Q  Q  I  L  *  L  T  I  L  L  *  E  D  F  V  *  G  G  T  *  T  R  A  C  N  L  S  K  S  *  F  R  K  G  W  Y  Q  M  H  I  R  T  L  Y  C  L  R  L  V  I  K  K  K  G  L  M  K  Q  C  Y  F  *  T  I  L  L  P  R  V  E  S  L  I  W  L  V  T  M  F  S  *  L  G  C  A  K  K  E  E  *  M  K  L  N  N  S  L  E  T  C  H  Q  K  G  L  I  L  T  L  S  A  I  I  S  C  *  G  A  C  V  L  K  D  V  G  R  K  R  M  S  F  W  Q  R  W  L  E  K  I  V  L  H  R  L  *  R  T  I  Y  *  S   </second_frame>
            <third_frame>   K  C  R  S  C  Y  A  I  S  *  *  N  G  G  I  W  I  S  N  K  Y  C  D  L  Q  F  S  Y  K  R  T  L  Y  E  G  E  P  E  Q  E  P  A  I  C  R  K  V  D  S  E  R  V  G  T  K  C  I  Y  V  L  Y  I  A  *  G  *  L  *  R  K  R  G  *  *  S  N  V  T  F  R  Q  Y  Y  C  Q  G  W  K  A  *  F  G  *  L  Q  C  S  L  N  W  A  V  Q  R  R  K  N  R  *  S  *  T  I  L  *  K  L  A  I  K  R  V  *  S  *  R  C  Q  L  *  Y  L  V  E  E  L  V  F  *  R  T  L  G  G  S  E  *  V  S  G  R  D  G  W  R  R  S  F  S  I  D  C  N  V  Q  Y  I  D  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63203" stop="63712"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>510</number_coding_nucleotides>
                  <number_encoded_amino_acids>170</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GNVGHAMQLVDKMEEYGYPTNTVTYNSLIRGLCMRGNLNKSLQFVEKLIQKGLVPNAYTYSILLEASYKEKGVNEAMLLLDNIIAKGGKPNLVSYNVLLTGLCKEGRIDEAKQFFRNLPSKGFNPNVVSYNILLRSLCFEGRWEEANEFLAEMVGEDRSPSIVTYNILIS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="67172" PGL_stop="65505"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67172" e_stop="67115"/>
            <exon e_start="65986" e_stop="65505"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="67172" e_stop="67115" e_length="58"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.991">
            <gDNA_intron_boundary i_start="67114" i_stop="65987" i_length="1128"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65986" e_stop="65505" e_length="482"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67172" stop="67115"/>
              <exon start="65986" stop="65611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67171" stop="67115"/>
              <exon start="65986" stop="65611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67170" stop="67115"/>
              <exon start="65986" stop="65603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67170" stop="67115"/>
              <exon start="65986" stop="65666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67167" stop="67115"/>
              <exon start="65986" stop="65573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67167" stop="67115"/>
              <exon start="65986" stop="65634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67166" stop="67115"/>
              <exon start="65986" stop="65611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67155" stop="67115"/>
              <exon start="65986" stop="65747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67134" stop="67115"/>
              <exon start="65986" stop="65505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67134" stop="67115"/>
              <exon start="65986" stop="65505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65844" stop="65611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302688" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGAAGACGAGGTAAAGAGAGAGTCGGCGGTGAATTTTGAGCAAGCATGAGAGCAAAG : TGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTGAATAAATTTTGGCTTTGAACGTTATTACTTCATGTGATGTTCTGATGATGTACAAGTGTGAAGTGAAACCCTGGTTGGTTTTGATCTAGTATGATCATTCTTGTGCTTGCTTGGTTCAAGAATATCAAG</gDNA_template>
            <first_frame> R  K  T  R  *  R  E  S  R  R  *  I  L  S  K  H  E  S  K   : V  E  E  E  A  Y  E  E  T  E  K  E  A  Q  K  D  E  T  E  I  *  V  E  Q  Q  Q  G  S  R  C  L  L  W  F  L  G  *  N  C  C  F  L  *  S  L  S  I  S  V  A  A  P  K  N  G  G  C  P  L  F  E  A  V  H  *  L  I  Y  Y  V  L  W  R  S  L  V  L  V  L  S  I  G  S  K  N  V  G  L  C  W  I  Y  V  S  Y  I  E  C  S  L  S  S  *  R  F  *  E  D  F  Y  L  F  G  V  T  F  H  L  N  K  F  W  L  *  T  L  L  L  H  V  M  F  *  *  C  T  S  V  K  *  N  P  G  W  F  *  S  S  M  I  I  L  V  L  A  W  F  K  N  I  K </first_frame>
            <second_frame>  G  R  R  G  K  E  R  V  G  G  E  F  *  A  S  M  R  A  K  :  W  K  K  K  R  M  R  R  L  K  R  K  R  R  K  M  R  Q  R  S  K  *  S  S  S  R  G  P  D  A  Y  C  G  F  L  V  E  T  A  A  F  Y  N  R  C  P  S  L  W  Q  L  Q  R  M  E  V  V  R  C  L  K  L  C  I  S  *  F  T  M  F  Y  G  G  A  *  F  *  F  *  A  L  V  V  R  M  L  V  C  V  G  Y  M  *  V  I  L  N  V  L  F  Q  A  D  V  F  K  R  I  S  I  C  L  G  L  H  F  I  *  I  N  F  G  F  E  R  Y  Y  F  M  *  C  S  D  D  V  Q  V  *  S  E  T  L  V  G  F  D  L  V  *  S  F  L  C  L  L  G  S  R  I  S   </second_frame>
            <third_frame>   E  D  E  V  K  R  E  S  A  V  N  F  E  Q  A  *  E  Q  S :   G  R  R  S  V  *  G  D  *  K  G  S  A  E  R  *  D  R  D  L  S  R  A  A  A  G  V  Q  M  P  T  V  V  S  W  L  K  L  L  L  F  I  I  A  V  H  L  C  G  S  S  K  E  W  R  L  S  V  V  *  S  C  A  L  V  N  L  L  C  S  M  E  E  L  S  F  S  F  K  H  W  *  *  E  C  W  F  V  L  D  I  C  E  L  Y  *  M  F  S  F  K  L  T  F  L  R  G  F  L  F  V  W  G  Y  I  S  F  E  *  I  L  A  L  N  V  I  T  S  C  D  V  L  M  M  Y  K  C  E  V  K  P  W  L  V  L  I  *  Y  D  H  S  C  A  C  L  V  Q  E  Y  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0215P04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="65607" PGL_stop="65845"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65607" e_stop="65845"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="65607" e_stop="65845" e_length="239"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65607" stop="65845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302689" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATAACGTTCAAAGCCAAAATTTATTCAAATGAAATGTAACCCCAAACAAATAGAAATCCTCTTAAAAACGTCAGCTTGAAAGAGAACATTCAATATAACTCACATATATCCAACACAAACCAACATTCTTACTACCAATGCTTAAAACTAAAACTAAGCTCCTCCATAGAACATAGTAAATTAACTAATGCACAGCTTCAAACAACGGACAACCTCCATTCTTTGGAGCTGCCACAG</gDNA_template>
            <first_frame> *  *  R  S  K  P  K  F  I  Q  M  K  C  N  P  K  Q  I  E  I  L  L  K  T  S  A  *  K  R  T  F  N  I  T  H  I  Y  P  T  Q  T  N  I  L  T  T  N  A  *  N  *  N  *  A  P  P  *  N  I  V  N  *  L  M  H  S  F  K  Q  R  T  T  S  I  L  W  S  C  H   </first_frame>
            <second_frame>  N  N  V  Q  S  Q  N  L  F  K  *  N  V  T  P  N  K  *  K  S  S  *  K  R  Q  L  E  R  E  H  S  I  *  L  T  Y  I  Q  H  K  P  T  F  L  L  P  M  L  K  T  K  T  K  L  L  H  R  T  *  *  I  N  *  C  T  A  S  N  N  G  Q  P  P  F  F  G  A  A  T  </second_frame>
            <third_frame>   I  T  F  K  A  K  I  Y  S  N  E  M  *  P  Q  T  N  R  N  P  L  K  N  V  S  L  K  E  N  I  Q  Y  N  S  H  I  S  N  T  N  Q  H  S  Y  Y  Q  C  L  K  L  K  L  S  S  S  I  E  H  S  K  L  T  N  A  Q  L  Q  T  T  D  N  L  H  S  L  E  L  P  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65648" stop="65845"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PQTNRNPLKNVSLKENIQYNSHISNTNQHSYYQCLKLKLSSSIEHSKLTNAQLQTTDNLHSLELPQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="69048" PGL_stop="72259"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69048" e_stop="69288"/>
            <exon e_start="70587" e_stop="70751"/>
            <exon e_start="71039" e_stop="71096"/>
            <exon e_start="72059" e_stop="72259"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="69048" e_stop="69288" e_length="241"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.998">
            <gDNA_intron_boundary i_start="69289" i_stop="70586" i_length="1298"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="70587" e_stop="70751" e_length="165"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="70752" i_stop="71038" i_length="287"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="71039" e_stop="71096" e_length="58"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.990">
            <gDNA_intron_boundary i_start="71097" i_stop="72058" i_length="962"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="72059" e_stop="72259" e_length="201"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69048" stop="69288"/>
              <exon start="70587" stop="70751"/>
              <exon start="71039" stop="71096"/>
              <exon start="72059" stop="72259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69048" stop="69288"/>
              <exon start="70587" stop="70751"/>
              <exon start="71039" stop="71096"/>
              <exon start="72059" stop="72143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69157" stop="69288"/>
              <exon start="70587" stop="70751"/>
              <exon start="71039" stop="71096"/>
              <exon start="72059" stop="72230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274732" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGACGAGTACCGGGAAATACAATGTCGAACGAAGCCCCAGCAAAACCACCGTGCGACACACCGGAGCATGACTCAGCCGGCGTCAACGGCTTTGACATCAACAACGACACTTCAAGTACTGCCTTAGCAAAGGGCCTTTCCACTATAATATCTTCTCTAATCCGGGAATTTGATGATAGTGCTGCCGCCACCTCTCGTAGTCAAGATCAACTCTCTTCCACCCTCGATCGTCTCACTGGAG : AGCTTGACAAGCTGCTGGAAGATGCCCCATTGCCTTTTATCATGCAGCATGCTGCCAGAATTTCTGGTGTTAGGAAAAGAATTACATCGTTGAACTCACTTTTGAAGTCTATACAGAGGCGTCTTGATAATATCGACCACACATTATCTGCTGGTTTGTTACATG : AGAAGTCCTCAGGGGATGGTGGGCGAGACCATGAGAATCATAAGTCTTCATTGAAGAG : TTCATGATCAAAATCCAGGAGAAGATTCAAATGTCCTTCGCAGTGCCCGTAGAAATCTCCTTCTGATTGCAAGCATTTGGAACTGATTCAGCCTTGTGGTGTAAAAGGTAGTCTGATGCATGAGGTTATAACACACTGCGTTCTGAAAAGATGTTCTTTTACCTGTCAAAAAATTGCATGGTTTCAGCTCTGTGCCATACT</gDNA_template>
            <first_frame> *  R  V  P  G  N  T  M  S  N  E  A  P  A  K  P  P  C  D  T  P  E  H  D  S  A  G  V  N  G  F  D  I  N  N  D  T  S  S  T  A  L  A  K  G  L  S  T  I  I  S  S  L  I  R  E  F  D  D  S  A  A  A  T  S  R  S  Q  D  Q  L  S  S  T  L  D  R  L  T  G   : E  L  D  K  L  L  E  D  A  P  L  P  F  I  M  Q  H  A  A  R  I  S  G  V  R  K  R  I  T  S  L  N  S  L  L  K  S  I  Q  R  R  L  D  N  I  D  H  T  L  S  A  G  L  L  H   : E  K  S  S  G  D  G  G  R  D  H  E  N  H  K  S  S  L  K  S :   S  *  S  K  S  R  R  R  F  K  C  P  S  Q  C  P  *  K  S  P  S  D  C  K  H  L  E  L  I  Q  P  C  G  V  K  G  S  L  M  H  E  V  I  T  H  C  V  L  K  R  C  S  F  T  C  Q  K  I  A  W  F  Q  L  C  A  I   </first_frame>
            <second_frame>  D  E  Y  R  E  I  Q  C  R  T  K  P  Q  Q  N  H  R  A  T  H  R  S  M  T  Q  P  A  S  T  A  L  T  S  T  T  T  L  Q  V  L  P  *  Q  R  A  F  P  L  *  Y  L  L  *  S  G  N  L  M  I  V  L  P  P  P  L  V  V  K  I  N  S  L  P  P  S  I  V  S  L  E  :  S  L  T  S  C  W  K  M  P  H  C  L  L  S  C  S  M  L  P  E  F  L  V  L  G  K  E  L  H  R  *  T  H  F  *  S  L  Y  R  G  V  L  I  I  S  T  T  H  Y  L  L  V  C  Y  M  :  R  S  P  Q  G  M  V  G  E  T  M  R  I  I  S  L  H  *  R   : V  H  D  Q  N  P  G  E  D  S  N  V  L  R  S  A  R  R  N  L  L  L  I  A  S  I  W  N  *  F  S  L  V  V  *  K  V  V  *  C  M  R  L  *  H  T  A  F  *  K  D  V  L  L  P  V  K  K  L  H  G  F  S  S  V  P  Y  </second_frame>
            <third_frame>   T  S  T  G  K  Y  N  V  E  R  S  P  S  K  T  T  V  R  H  T  G  A  *  L  S  R  R  Q  R  L  *  H  Q  Q  R  H  F  K  Y  C  L  S  K  G  P  F  H  Y  N  I  F  S  N  P  G  I  *  *  *  C  C  R  H  L  S  *  S  R  S  T  L  F  H  P  R  S  S  H  W  R :   A  *  Q  A  A  G  R  C  P  I  A  F  Y  H  A  A  C  C  Q  N  F  W  C  *  E  K  N  Y  I  V  E  L  T  F  E  V  Y  T  E  A  S  *  *  Y  R  P  H  I  I  C  W  F  V  T  * :   E  V  L  R  G  W  W  A  R  P  *  E  S  *  V  F  I  E  E  :  F  M  I  K  I  Q  E  K  I  Q  M  S  F  A  V  P  V  E  I  S  F  *  L  Q  A  F  G  T  D  S  A  L  W  C  K  R  *  S  D  A  *  G  Y  N  T  L  R  S  E  K  M  F  F  Y  L  S  K  N  C  M  V  S  A  L  C  H  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69051" stop="69288"/>
                    <exon start="70587" stop="70751"/>
                    <exon start="71039" stop="71096"/>
                    <exon start="72059" stop="72065"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVPGNTMSNEAPAKPPCDTPEHDSAGVNGFDINNDTSSTALAKGLSTIISSLIREFDDSAAATSRSQDQLSSTLDRLTGELDKLLEDAPLPFIMQHAARISGVRKRITSLNSLLKSIQRRLDNIDHTLSAGLLHEKSSGDGGRDHENHKSSLKSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="69060" e_stop="69288"/>
            <exon e_start="69709" e_stop="69934"/>
            <exon e_start="69987" e_stop="70007"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.437" e_score="0.996"/>
          <exon-intron don_prob="0.000" acc_prob="0.484" e_score="1.000"/>
          <exon-only e_score="0.762"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="69060" e_stop="69288" e_length="229"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.437">
            <gDNA_intron_boundary i_start="69289" i_stop="69708" i_length="420"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69709" e_stop="69934" e_length="226"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.484">
            <gDNA_intron_boundary i_start="69935" i_stop="69986" i_length="52"/>
          </intron>
          <exon e_serial="3" e_score="0.762">
            <gDNA_exon_boundary e_start="69987" e_stop="70007" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69060" stop="69288"/>
              <exon start="69709" stop="69934"/>
              <exon start="69987" stop="70007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716656" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAAATACAATGTCGAACGAAGCCCCAGCAAAACCACCGTGCGACACACCGGAGCATGACTCAGCCGGCGTCAACGGCTTTGACATCAACAACGACACTTCAAGTACTGCCTTAGCAAAGGGCCTTTCCACTATAATATCTTCTCTAATCCGGGAATTTGATGATAGTGCTGCCGCCACCTCTCGTAGTCAAGATCAACTCTCTTCCACCCTCGATCGTCTCACTGGAG : GCTTACCCAAACAGATGTGGTTGCAATGTATCAAGTTGTTCAATGGATTGGTCGAGATGAGCATAAGATGCCGTCACACCATTGTCATGTTAGAGAAATCACCAGGGTTGGGGCGTGTGTGTGTGCTGGGAGGCAATAGCTGTATATGTAATTTTGTTTGCACCTTCTAGTTTCATTTGCAGCTCACCATTGTTTCCTTGAGAATGAATACAATCACTTTCTTCTT : CTAAAGGAGAAAAAAAAAAGA</gDNA_template>
            <first_frame> G  N  T  M  S  N  E  A  P  A  K  P  P  C  D  T  P  E  H  D  S  A  G  V  N  G  F  D  I  N  N  D  T  S  S  T  A  L  A  K  G  L  S  T  I  I  S  S  L  I  R  E  F  D  D  S  A  A  A  T  S  R  S  Q  D  Q  L  S  S  T  L  D  R  L  T  G   : G  L  P  K  Q  M  W  L  Q  C  I  K  L  F  N  G  L  V  E  M  S  I  R  C  R  H  T  I  V  M  L  E  K  S  P  G  L  G  R  V  C  V  L  G  G  N  S  C  I  C  N  F  V  C  T  F  *  F  H  L  Q  L  T  I  V  S  L  R  M  N  T  I  T  F  F  F :   *  R  R  K  K  K   </first_frame>
            <second_frame>  E  I  Q  C  R  T  K  P  Q  Q  N  H  R  A  T  H  R  S  M  T  Q  P  A  S  T  A  L  T  S  T  T  T  L  Q  V  L  P  *  Q  R  A  F  P  L  *  Y  L  L  *  S  G  N  L  M  I  V  L  P  P  P  L  V  V  K  I  N  S  L  P  P  S  I  V  S  L  E  :  A  Y  P  N  R  C  G  C  N  V  S  S  C  S  M  D  W  S  R  *  A  *  D  A  V  T  P  L  S  C  *  R  N  H  Q  G  W  G  V  C  V  C  W  E  A  I  A  V  Y  V  I  L  F  A  P  S  S  F  I  C  S  S  P  L  F  P  *  E  *  I  Q  S  L  S  S   : S  K  G  E  K  K  K  </second_frame>
            <third_frame>   K  Y  N  V  E  R  S  P  S  K  T  T  V  R  H  T  G  A  *  L  S  R  R  Q  R  L  *  H  Q  Q  R  H  F  K  Y  C  L  S  K  G  P  F  H  Y  N  I  F  S  N  P  G  I  *  *  *  C  C  R  H  L  S  *  S  R  S  T  L  F  H  P  R  S  S  H  W  R :   L  T  Q  T  D  V  V  A  M  Y  Q  V  V  Q  W  I  G  R  D  E  H  K  M  P  S  H  H  C  H  V  R  E  I  T  R  V  G  A  C  V  C  A  G  R  Q  *  L  Y  M  *  F  C  L  H  L  L  V  S  F  A  A  H  H  C  F  L  E  N  E  Y  N  H  F  L  L  :  L  K  E  K  K  K  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69060" stop="69288"/>
                    <exon start="69709" stop="69878"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>396</number_coding_nucleotides>
                  <number_encoded_amino_acids>132</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GNTMSNEAPAKPPCDTPEHDSAGVNGFDINNDTSSTALAKGLSTIISSLIREFDDSAAATSRSQDQLSSTLDRLTGGLPKQMWLQCIKLFNGLVEMSIRCRHTIVMLEKSPGLGRVCVLGGNSCICNFVCTF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="76604" PGL_stop="76958"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76604" e_stop="76958"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="76604" e_stop="76958" e_length="355"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76604" stop="76958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268758" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTTTCTTTTTATATATATATATATTCCATTCTGTAATCGTTACGTTAACGTTTCTTCTATTTGTATGTACGCCGGAAATTATGGCTTCAGCTTGCGTTAACAAAATGGGTATGTCGCCGGAGAAGTTTTTGGATTGTTCTCCGGCTGCGAAGTACAAGTCATATGGTTGGTTAAGTCCAAGGATGTCATTTAGTAGGGACGGCGAAGCTTCCAAGGTTGCCGGAGCTAAGCAGACGAGTGTTGAAAATGATAAGGTGGAGGAATTAGATCCAGAAGTTTCGAAAGATATGGGCGATTTTGAGTTTTGCCTTGAAGATCCGGTAAATATGCTGCCAGCTGATGAGCTTTTTTTC</gDNA_template>
            <first_frame> L  F  L  F  I  Y  I  Y  I  P  F  C  N  R  Y  V  N  V  S  S  I  C  M  Y  A  G  N  Y  G  F  S  L  R  *  Q  N  G  Y  V  A  G  E  V  F  G  L  F  S  G  C  E  V  Q  V  I  W  L  V  K  S  K  D  V  I  *  *  G  R  R  S  F  Q  G  C  R  S  *  A  D  E  C  *  K  *  *  G  G  G  I  R  S  R  S  F  E  R  Y  G  R  F  *  V  L  P  *  R  S  G  K  Y  A  A  S  *  *  A  F  F  </first_frame>
            <second_frame>  S  F  F  L  Y  I  Y  I  F  H  S  V  I  V  T  L  T  F  L  L  F  V  C  T  P  E  I  M  A  S  A  C  V  N  K  M  G  M  S  P  E  K  F  L  D  C  S  P  A  A  K  Y  K  S  Y  G  W  L  S  P  R  M  S  F  S  R  D  G  E  A  S  K  V  A  G  A  K  Q  T  S  V  E  N  D  K  V  E  E  L  D  P  E  V  S  K  D  M  G  D  F  E  F  C  L  E  D  P  V  N  M  L  P  A  D  E  L  F  F </second_frame>
            <third_frame>   L  S  F  Y  I  Y  I  Y  S  I  L  *  S  L  R  *  R  F  F  Y  L  Y  V  R  R  K  L  W  L  Q  L  A  L  T  K  W  V  C  R  R  R  S  F  W  I  V  L  R  L  R  S  T  S  H  M  V  G  *  V  Q  G  C  H  L  V  G  T  A  K  L  P  R  L  P  E  L  S  R  R  V  L  K  M  I  R  W  R  N  *  I  Q  K  F  R  K  I  W  A  I  L  S  F  A  L  K  I  R  *  I  C  C  Q  L  M  S  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76605" stop="76958"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFLYIYIFHSVIVTLTFLLFVCTPEIMASACVNKMGMSPEKFLDCSPAAKYKSYGWLSPRMSFSRDGEASKVAGAKQTSVENDKVEELDPEVSKDMGDFEFCLEDPVNMLPADELFF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="84244" PGL_stop="86302"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84244" e_stop="84285"/>
            <exon e_start="84456" e_stop="84597"/>
            <exon e_start="84725" e_stop="84820"/>
            <exon e_start="85356" e_stop="85436"/>
            <exon e_start="85707" e_stop="85781"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.928" acc_prob="0.823" e_score="0.929"/>
          <exon-intron don_prob="0.968" acc_prob="0.958" e_score="0.944"/>
          <exon-intron don_prob="0.996" acc_prob="0.981" e_score="0.969"/>
          <exon-intron don_prob="0.999" acc_prob="0.980" e_score="0.988"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="84244" e_stop="84285" e_length="42"/>
          </exon>
          <intron i_serial="1" don_prob="0.928" acc_prob="0.823">
            <gDNA_intron_boundary i_start="84286" i_stop="84455" i_length="170"/>
          </intron>
          <exon e_serial="2" e_score="0.944">
            <gDNA_exon_boundary e_start="84456" e_stop="84597" e_length="142"/>
          </exon>
          <intron i_serial="2" don_prob="0.968" acc_prob="0.958">
            <gDNA_intron_boundary i_start="84598" i_stop="84724" i_length="127"/>
          </intron>
          <exon e_serial="3" e_score="0.969">
            <gDNA_exon_boundary e_start="84725" e_stop="84820" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.981">
            <gDNA_intron_boundary i_start="84821" i_stop="85355" i_length="535"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="85356" e_stop="85436" e_length="81"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.980">
            <gDNA_intron_boundary i_start="85437" i_stop="85706" i_length="270"/>
          </intron>
          <exon e_serial="5" e_score="0.973">
            <gDNA_exon_boundary e_start="85707" e_stop="85781" e_length="75"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84244" stop="84285"/>
              <exon start="84456" stop="84597"/>
              <exon start="84725" stop="84820"/>
              <exon start="85356" stop="85436"/>
              <exon start="85707" stop="85781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725625" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTCAGCCCAATTCTCTTCTTCCACAAAGAAGCTAGCAACG : TGCAAATCTTCCCTCCATGGCTGAAGAGTTCAAGTATTCTTGCAACACTGCCAGTGAAACCCTAGAATGGATCCATGCAATTATCAACTTCATTGCACCTTATCGTTATTTTATAGATGCTCATGTCGTCAACTTTTTCAAG : GATAGACTATGGGAAGCTGTGGATAAAGAATGGATGGATTGTTTACAGAAGGAGTCGGTTGAAAATCTTCTCCGGATTCCTTCTGGTGTGGTTCAG : GATCACTGGCCTGGCTCACTTAAAGACTTCATACTTACTCTGAGGTCTCTTTGTCTTTCACGTGAACAGGCTGATTTTCAG : GAATTTTCAGGAATGCACATAGCTTCACTAAGTAATGTTTTAGCTCAAGGCATGAATCATAAGAAAAAGCATGAA</gDNA_template>
            <first_frame> I  S  A  Q  F  S  S  S  T  K  K  L  A  T  :  C  K  S  S  L  H  G  *  R  V  Q  V  F  L  Q  H  C  Q  *  N  P  R  M  D  P  C  N  Y  Q  L  H  C  T  L  S  L  F  Y  R  C  S  C  R  Q  L  F  Q   : G  *  T  M  G  S  C  G  *  R  M  D  G  L  F  T  E  G  V  G  *  K  S  S  P  D  S  F  W  C  G  S   : G  S  L  A  W  L  T  *  R  L  H  T  Y  S  E  V  S  L  S  F  T  *  T  G  *  F  S   : G  I  F  R  N  A  H  S  F  T  K  *  C  F  S  S  R  H  E  S  *  E  K  A  *  </first_frame>
            <second_frame>  F  Q  P  N  S  L  L  P  Q  R  S  *  Q  R :   A  N  L  P  S  M  A  E  E  F  K  Y  S  C  N  T  A  S  E  T  L  E  W  I  H  A  I  I  N  F  I  A  P  Y  R  Y  F  I  D  A  H  V  V  N  F  F  K  :  D  R  L  W  E  A  V  D  K  E  W  M  D  C  L  Q  K  E  S  V  E  N  L  L  R  I  P  S  G  V  V  Q  :  D  H  W  P  G  S  L  K  D  F  I  L  T  L  R  S  L  C  L  S  R  E  Q  A  D  F  Q  :  E  F  S  G  M  H  I  A  S  L  S  N  V  L  A  Q  G  M  N  H  K  K  K  H  E </second_frame>
            <third_frame>   F  S  P  I  L  F  F  H  K  E  A  S  N   : V  Q  I  F  P  P  W  L  K  S  S  S  I  L  A  T  L  P  V  K  P  *  N  G  S  M  Q  L  S  T  S  L  H  L  I  V  I  L  *  M  L  M  S  S  T  F  S  R :   I  D  Y  G  K  L  W  I  K  N  G  W  I  V  Y  R  R  S  R  L  K  I  F  S  G  F  L  L  V  W  F  R :   I  T  G  L  A  H  L  K  T  S  Y  L  L  *  G  L  F  V  F  H  V  N  R  L  I  F  R :   N  F  Q  E  C  T  *  L  H  *  V  M  F  *  L  K  A  *  I  I  R  K  S  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84281" stop="84285"/>
                    <exon start="84456" stop="84597"/>
                    <exon start="84725" stop="84820"/>
                    <exon start="85356" stop="85436"/>
                    <exon start="85707" stop="85781"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QRANLPSMAEEFKYSCNTASETLEWIHAIINFIAPYRYFIDAHVVNFFKDRLWEAVDKEWMDCLQKESVENLLRIPSGVVQDHWPGSLKDFILTLRSLCLSREQADFQEFSGMHIASLSNVLAQGMNHKKKHE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="84282" e_stop="84597"/>
            <exon e_start="84725" e_stop="84820"/>
            <exon e_start="85356" e_stop="85436"/>
            <exon e_start="85707" e_stop="85781"/>
            <exon e_start="86250" e_stop="86302"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.968" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.655" acc_prob="0.928" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="84282" e_stop="84597" e_length="316"/>
          </exon>
          <intron i_serial="1" don_prob="0.968" acc_prob="0.958">
            <gDNA_intron_boundary i_start="84598" i_stop="84724" i_length="127"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="84725" e_stop="84820" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.981">
            <gDNA_intron_boundary i_start="84821" i_stop="85355" i_length="535"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="85356" e_stop="85436" e_length="81"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.980">
            <gDNA_intron_boundary i_start="85437" i_stop="85706" i_length="270"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="85707" e_stop="85781" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.655" acc_prob="0.928">
            <gDNA_intron_boundary i_start="85782" i_stop="86249" i_length="468"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="86250" e_stop="86302" e_length="53"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84282" stop="84597"/>
              <exon start="84725" stop="84820"/>
              <exon start="85356" stop="85436"/>
              <exon start="85707" stop="85781"/>
              <exon start="86250" stop="86302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315848" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACGGTAAAACCCAGAATCGACAAAACAATGGTTAATGAGTATACATTCTGTTTTGGAGTAGTGGTTAGCATATTGCATTGTTAGACTGTCTATGTCACTTCTCAGTTGCTTGATACTTATGGAAATGCATATTTTATTACATTTAAGTTGTTTTTCACCTTGTTCTCTGTTAGTGCAAATCTTCCCTCCATGGCTGAAGAGTTCAAGTATTCTTGCAACACTGCCAGTGAAACCCTAGAATGGATCCATGCAATTATCAACTTCATTGCACCTTATCGTTATTTTATAGATGCTCATGTCGTCAACTTTTTCAAG : GATAGACTATGGGAAGCTGTGGATAAAGAATGGATGGATTGTTTACAGAAGGAGTCGGTTGAAAATCTTCTCCGGATTCCTTCTGGTGTGGTTCAG : GATCACTGGCCTGGCTCACTTAAAGACTTCATACTTACTCTGAGGTCTCTTTGTCTTTCACGTGAACAGGCTGATTTTCAG : GAATTTTCAGGAATGCACATAGCTTCACTAAGTAATGTTTTAGCTCAAGGCATGAATCATAAGAAAAAGCATGAA : GTGGAAGTACTTTCTGCTCTGGTCAGCTTAGTCGCAAAGCAAGTTGGTGCCCG</gDNA_template>
            <first_frame> N  G  K  T  Q  N  R  Q  N  N  G  *  *  V  Y  I  L  F  W  S  S  G  *  H  I  A  L  L  D  C  L  C  H  F  S  V  A  *  Y  L  W  K  C  I  F  Y  Y  I  *  V  V  F  H  L  V  L  C  *  C  K  S  S  L  H  G  *  R  V  Q  V  F  L  Q  H  C  Q  *  N  P  R  M  D  P  C  N  Y  Q  L  H  C  T  L  S  L  F  Y  R  C  S  C  R  Q  L  F  Q   : G  *  T  M  G  S  C  G  *  R  M  D  G  L  F  T  E  G  V  G  *  K  S  S  P  D  S  F  W  C  G  S   : G  S  L  A  W  L  T  *  R  L  H  T  Y  S  E  V  S  L  S  F  T  *  T  G  *  F  S   : G  I  F  R  N  A  H  S  F  T  K  *  C  F  S  S  R  H  E  S  *  E  K  A  *   : S  G  S  T  F  C  S  G  Q  L  S  R  K  A  S  W  C  P </first_frame>
            <second_frame>  T  V  K  P  R  I  D  K  T  M  V  N  E  Y  T  F  C  F  G  V  V  V  S  I  L  H  C  *  T  V  Y  V  T  S  Q  L  L  D  T  Y  G  N  A  Y  F  I  T  F  K  L  F  F  T  L  F  S  V  S  A  N  L  P  S  M  A  E  E  F  K  Y  S  C  N  T  A  S  E  T  L  E  W  I  H  A  I  I  N  F  I  A  P  Y  R  Y  F  I  D  A  H  V  V  N  F  F  K  :  D  R  L  W  E  A  V  D  K  E  W  M  D  C  L  Q  K  E  S  V  E  N  L  L  R  I  P  S  G  V  V  Q  :  D  H  W  P  G  S  L  K  D  F  I  L  T  L  R  S  L  C  L  S  R  E  Q  A  D  F  Q  :  E  F  S  G  M  H  I  A  S  L  S  N  V  L  A  Q  G  M  N  H  K  K  K  H  E  :  V  E  V  L  S  A  L  V  S  L  V  A  K  Q  V  G  A   </second_frame>
            <third_frame>   R  *  N  P  E  S  T  K  Q  W  L  M  S  I  H  S  V  L  E  *  W  L  A  Y  C  I  V  R  L  S  M  S  L  L  S  C  L  I  L  M  E  M  H  I  L  L  H  L  S  C  F  S  P  C  S  L  L  V  Q  I  F  P  P  W  L  K  S  S  S  I  L  A  T  L  P  V  K  P  *  N  G  S  M  Q  L  S  T  S  L  H  L  I  V  I  L  *  M  L  M  S  S  T  F  S  R :   I  D  Y  G  K  L  W  I  K  N  G  W  I  V  Y  R  R  S  R  L  K  I  F  S  G  F  L  L  V  W  F  R :   I  T  G  L  A  H  L  K  T  S  Y  L  L  *  G  L  F  V  F  H  V  N  R  L  I  F  R :   N  F  Q  E  C  T  *  L  H  *  V  M  F  *  L  K  A  *  I  I  R  K  S  M  K :   W  K  Y  F  L  L  W  S  A  *  S  Q  S  K  L  V  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84367" stop="84597"/>
                    <exon start="84725" stop="84820"/>
                    <exon start="85356" stop="85436"/>
                    <exon start="85707" stop="85781"/>
                    <exon start="86250" stop="86300"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>534</number_coding_nucleotides>
                  <number_encoded_amino_acids>178</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TVYVTSQLLDTYGNAYFITFKLFFTLFSVSANLPSMAEEFKYSCNTASETLEWIHAIINFIAPYRYFIDAHVVNFFKDRLWEAVDKEWMDCLQKESVENLLRIPSGVVQDHWPGSLKDFILTLRSLCLSREQADFQEFSGMHIASLSNVLAQGMNHKKKHEVEVLSALVSLVAKQVGA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="89654" PGL_stop="91064"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89654" e_stop="89796"/>
            <exon e_start="90518" e_stop="91064"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.241" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="89654" e_stop="89796" e_length="143"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.241">
            <gDNA_intron_boundary i_start="89797" i_stop="90517" i_length="721"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="90518" e_stop="91064" e_length="547"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89654" stop="89796"/>
              <exon start="90518" stop="91064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89654" stop="89796"/>
              <exon start="90518" stop="90857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89667" stop="89796"/>
              <exon start="90518" stop="90848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240448" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGTTCTAATAGCGAGTCTAACGCTGTGGACAGATGCTCACTATTTGCAAAATTTTGCGAGTCTGGGTTAGGTCGTTTACATCTCCCTCATTTGGCGGATACAGCTTACAGTGCAATCTGGAGGGAGTCTGAATCATACGCT : GAGTTAATAGGACCTTATTGGTCTCTTCGTGCTGCCCTGGGCCCCGTTTTGGAAACTCTTATACTGCTTGACCGATTGTTGCTCCTCCAGGAGTATGGCAGTGATCTGGAGGCAAGCCTCTTACCTATTTTTAATCCTGTGTTATCTCCGAGGAATATGGCTATCATAGCTAGGAAAATTAGAAAGTAGAAAATTTTCTACAGTCTCTAAAAATGTGATTCAACATACTGTGTTGCTATGATTTGTTCTCAGATATTTTGACCGCTTCTGTGTTATCCTTTTTTTAATAAATCTTCCTTAACCAAGAGAAAAAATGTCAGAAGAAAGGAAGCAATTTGCGACCAGGAACAAGCTATATTATTACAGATGTCTTTTTAACCAGAAAAAGAAGAACAGAAGAAACAGGAAAAATTTTGCAACCAGGACCTAGCTTTGTACATGGTCCAAGCAAAAAATGAAGCTCTAGTGGTGAAATGGTATTATATTTATTTATCTATAGATGATATTTGGTTTGCAAGGTGTCTCTTTACACATTTGATCTCAAGTT</gDNA_template>
            <first_frame> R  V  L  I  A  S  L  T  L  W  T  D  A  H  Y  L  Q  N  F  A  S  L  G  *  V  V  Y  I  S  L  I  W  R  I  Q  L  T  V  Q  S  G  G  S  L  N  H  T  L :   S  *  *  D  L  I  G  L  F  V  L  P  W  A  P  F  W  K  L  L  Y  C  L  T  D  C  C  S  S  R  S  M  A  V  I  W  R  Q  A  S  Y  L  F  L  I  L  C  Y  L  R  G  I  W  L  S  *  L  G  K  L  E  S  R  K  F  S  T  V  S  K  N  V  I  Q  H  T  V  L  L  *  F  V  L  R  Y  F  D  R  F  C  V  I  L  F  L  I  N  L  P  *  P  R  E  K  M  S  E  E  R  K  Q  F  A  T  R  N  K  L  Y  Y  Y  R  C  L  F  N  Q  K  K  K  N  R  R  N  R  K  N  F  A  T  R  T  *  L  C  T  W  S  K  Q  K  M  K  L  *  W  *  N  G  I  I  F  I  Y  L  *  M  I  F  G  L  Q  G  V  S  L  H  I  *  S  Q  V </first_frame>
            <second_frame>  E  F  *  *  R  V  *  R  C  G  Q  M  L  T  I  C  K  I  L  R  V  W  V  R  S  F  T  S  P  S  F  G  G  Y  S  L  Q  C  N  L  E  G  V  *  I  I  R   : *  V  N  R  T  L  L  V  S  S  C  C  P  G  P  R  F  G  N  S  Y  T  A  *  P  I  V  A  P  P  G  V  W  Q  *  S  G  G  K  P  L  T  Y  F  *  S  C  V  I  S  E  E  Y  G  Y  H  S  *  E  N  *  K  V  E  N  F  L  Q  S  L  K  M  *  F  N  I  L  C  C  Y  D  L  F  S  D  I  L  T  A  S  V  L  S  F  F  *  *  I  F  L  N  Q  E  K  K  C  Q  K  K  G  S  N  L  R  P  G  T  S  Y  I  I  T  D  V  F  L  T  R  K  R  R  T  E  E  T  G  K  I  L  Q  P  G  P  S  F  V  H  G  P  S  K  K  *  S  S  S  G  E  M  V  L  Y  L  F  I  Y  R  *  Y  L  V  C  K  V  S  L  Y  T  F  D  L  K   </second_frame>
            <third_frame>   S  S  N  S  E  S  N  A  V  D  R  C  S  L  F  A  K  F  C  E  S  G  L  G  R  L  H  L  P  H  L  A  D  T  A  Y  S  A  I  W  R  E  S  E  S  Y  A  :  E  L  I  G  P  Y  W  S  L  R  A  A  L  G  P  V  L  E  T  L  I  L  L  D  R  L  L  L  L  Q  E  Y  G  S  D  L  E  A  S  L  L  P  I  F  N  P  V  L  S  P  R  N  M  A  I  I  A  R  K  I  R  K  *  K  I  F  Y  S  L  *  K  C  D  S  T  Y  C  V  A  M  I  C  S  Q  I  F  *  P  L  L  C  Y  P  F  F  N  K  S  S  L  T  K  R  K  N  V  R  R  K  E  A  I  C  D  Q  E  Q  A  I  L  L  Q  M  S  F  *  P  E  K  E  E  Q  K  K  Q  E  K  F  C  N  Q  D  L  A  L  Y  M  V  Q  A  K  N  E  A  L  V  V  K  W  Y  Y  I  Y  L  S  I  D  D  I  W  F  A  R  C  L  F  T  H  L  I  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89656" stop="89796"/>
                    <exon start="90518" stop="90706"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSNSESNAVDRCSLFAKFCESGLGRLHLPHLADTAYSAIWRESESYAELIGPYWSLRAALGPVLETLILLDRLLLLQEYGSDLEASLLPIFNPVLSPRNMAIIARKIRK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="91355" PGL_stop="90717"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91355" e_stop="90717"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.939">
            <gDNA_exon_boundary e_start="91355" e_stop="90717" e_length="639"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91355" stop="90717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTAATTAGCTTAAAGTTCATGTCATCACCTGTCATTTGTCTATTGTCCTTGAATACTTCATAGGACAGTGGACACAACCCTCCACAACTTATATATTAAAAAGGACAATTTCTCATGACATTACATCCCAAAGTGAATAAAGGACAATATCATAATCATAAGAACCCTGAGTAGTCAGAATGTGAAACCAACATTTAAATTAGCAATAGGTTGGATATATATTTCAATTGATAACCACATTCTCATTCTTGGGCTTGTCTTCTCACCTTGAGAAAAGACAGCAGTATATAAACTTGAGATCAAATGTGTAAAGAGACACCTTGCAAACCAAATATCATCTATAGATAAATAAATATAATACCATTTCACCACTAGAGCTTCATTTTTTGCTTGGACCATGTACAAAGCTAGGTCCTGGTTGCAAAATTTTTCCTGTTTCTTCTGTTCTTCTTTTTCTGGTTAAAAAGACATCTGTAATAATATAGCTTGTTCCTGGTCGCAAATTGCTTCCTTTCTTCTGACATTTTTTCTCTTGGTTAAGGAAGATTTATTAAAAAAAGGATAACACAGAAGCGGTCAAAATATCTGAGAACAAATCATAGCAACACAGTATGTTGAATCACATTTTTAGAGACTGT</gDNA_template>
            <first_frame> C  N  *  L  K  V  H  V  I  T  C  H  L  S  I  V  L  E  Y  F  I  G  Q  W  T  Q  P  S  T  T  Y  I  L  K  R  T  I  S  H  D  I  T  S  Q  S  E  *  R  T  I  S  *  S  *  E  P  *  V  V  R  M  *  N  Q  H  L  N  *  Q  *  V  G  Y  I  F  Q  L  I  T  T  F  S  F  L  G  L  S  S  H  L  E  K  R  Q  Q  Y  I  N  L  R  S  N  V  *  R  D  T  L  Q  T  K  Y  H  L  *  I  N  K  Y  N  T  I  S  P  L  E  L  H  F  L  L  G  P  C  T  K  L  G  P  G  C  K  I  F  P  V  S  S  V  L  L  F  L  V  K  K  T  S  V  I  I  *  L  V  P  G  R  K  L  L  P  F  F  *  H  F  F  S  W  L  R  K  I  Y  *  K  K  D  N  T  E  A  V  K  I  S  E  N  K  S  *  Q  H  S  M  L  N  H  I  F  R  D  C </first_frame>
            <second_frame>  V  I  S  L  K  F  M  S  S  P  V  I  C  L  L  S  L  N  T  S  *  D  S  G  H  N  P  P  Q  L  I  Y  *  K  G  Q  F  L  M  T  L  H  P  K  V  N  K  G  Q  Y  H  N  H  K  N  P  E  *  S  E  C  E  T  N  I  *  I  S  N  R  L  D  I  Y  F  N  *  *  P  H  S  H  S  W  A  C  L  L  T  L  R  K  D  S  S  I  *  T  *  D  Q  M  C  K  E  T  P  C  K  P  N  I  I  Y  R  *  I  N  I  I  P  F  H  H  *  S  F  I  F  C  L  D  H  V  Q  S  *  V  L  V  A  K  F  F  L  F  L  L  F  F  F  F  W  L  K  R  H  L  *  *  Y  S  L  F  L  V  A  N  C  F  L  S  S  D  I  F  S  L  G  *  G  R  F  I  K  K  R  I  T  Q  K  R  S  K  Y  L  R  T  N  H  S  N  T  V  C  *  I  T  F  L  E  T   </second_frame>
            <third_frame>   *  L  A  *  S  S  C  H  H  L  S  F  V  Y  C  P  *  I  L  H  R  T  V  D  T  T  L  H  N  L  Y  I  K  K  D  N  F  S  *  H  Y  I  P  K  *  I  K  D  N  I  I  I  I  R  T  L  S  S  Q  N  V  K  P  T  F  K  L  A  I  G  W  I  Y  I  S  I  D  N  H  I  L  I  L  G  L  V  F  S  P  *  E  K  T  A  V  Y  K  L  E  I  K  C  V  K  R  H  L  A  N  Q  I  S  S  I  D  K  *  I  *  Y  H  F  T  T  R  A  S  F  F  A  W  T  M  Y  K  A  R  S  W  L  Q  N  F  S  C  F  F  C  S  S  F  S  G  *  K  D  I  C  N  N  I  A  C  S  W  S  Q  I  A  S  F  L  L  T  F  F  L  L  V  K  E  D  L  L  K  K  G  *  H  R  S  G  Q  N  I  *  E  Q  I  I  A  T  Q  Y  V  E  S  H  F  *  R  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0215P04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="94231" PGL_stop="94815"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94231" e_stop="94815"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="94231" e_stop="94815" e_length="585"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94231" stop="94815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271645" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATTAGTCAATCCAAAATTTTTCCCTAAAAGGAAAACCTATTTATGTTAAGAAATTATGGTAAATAAAATCCAACAAATCTCCTCCCCCTTGGCCTGTATTTCTGACAAAATAAATTTCTCCACATTCTTCATTTAATCTTCAACAACTTGCTTCTCTTCTTCTTAATCTCCTTTGTAAAATTTATGTCTCAACATAGAAAACCTCTCTGAAACAATTTCTCCAACAAAATCTTCATTACTGTCAAAAAGATTGCGGCTAGAACTACACCTGTCAAGATGAACACACCTCTTTCTAACCTGGTCCAATAATCGATTATCGAACCACTGAACCTGACTCTGTCATTAAATGGCTCTAATACCACTTGTTAGGATCGAAATAAGCAGGTGTAAATGCGGAAGCTAGCAAAGCAAACTTCGAAAGACCACGAGTAAGAAGACAACGAGAAATATACCAAAAGACACAAAGATTTAACGTGGTTCGGTCAATCGACCTACGTTCACAAAGGAGATGAGCAATCCACTATAAATATGAGAGTACAATATACAGAGAGAAACAACATCAACCAATTCATTCGGAATATATG</gDNA_template>
            <first_frame> D  *  S  I  Q  N  F  S  L  K  G  K  P  I  Y  V  K  K  L  W  *  I  K  S  N  K  S  P  P  P  W  P  V  F  L  T  K  *  I  S  P  H  S  S  F  N  L  Q  Q  L  A  S  L  L  L  N  L  L  C  K  I  Y  V  S  T  *  K  T  S  L  K  Q  F  L  Q  Q  N  L  H  Y  C  Q  K  D  C  G  *  N  Y  T  C  Q  D  E  H  T  S  F  *  P  G  P  I  I  D  Y  R  T  T  E  P  D  S  V  I  K  W  L  *  Y  H  L  L  G  S  K  *  A  G  V  N  A  E  A  S  K  A  N  F  E  R  P  R  V  R  R  Q  R  E  I  Y  Q  K  T  Q  R  F  N  V  V  R  S  I  D  L  R  S  Q  R  R  *  A  I  H  Y  K  Y  E  S  T  I  Y  R  E  K  Q  H  Q  P  I  H  S  E  Y  M </first_frame>
            <second_frame>  I  S  Q  S  K  I  F  P  *  K  E  N  L  F  M  L  R  N  Y  G  K  *  N  P  T  N  L  L  P  L  G  L  Y  F  *  Q  N  K  F  L  H  I  L  H  L  I  F  N  N  L  L  L  F  F  L  I  S  F  V  K  F  M  S  Q  H  R  K  P  L  *  N  N  F  S  N  K  I  F  I  T  V  K  K  I  A  A  R  T  T  P  V  K  M  N  T  P  L  S  N  L  V  Q  *  S  I  I  E  P  L  N  L  T  L  S  L  N  G  S  N  T  T  C  *  D  R  N  K  Q  V  *  M  R  K  L  A  K  Q  T  S  K  D  H  E  *  E  D  N  E  K  Y  T  K  R  H  K  D  L  T  W  F  G  Q  S  T  Y  V  H  K  G  D  E  Q  S  T  I  N  M  R  V  Q  Y  T  E  R  N  N  I  N  Q  F  I  R  N  I   </second_frame>
            <third_frame>   L  V  N  P  K  F  F  P  K  R  K  T  Y  L  C  *  E  I  M  V  N  K  I  Q  Q  I  S  S  P  L  A  C  I  S  D  K  I  N  F  S  T  F  F  I  *  S  S  T  T  C  F  S  S  S  *  S  P  L  *  N  L  C  L  N  I  E  N  L  S  E  T  I  S  P  T  K  S  S  L  L  S  K  R  L  R  L  E  L  H  L  S  R  *  T  H  L  F  L  T  W  S  N  N  R  L  S  N  H  *  T  *  L  C  H  *  M  A  L  I  P  L  V  R  I  E  I  S  R  C  K  C  G  S  *  Q  S  K  L  R  K  T  T  S  K  K  T  T  R  N  I  P  K  D  T  K  I  *  R  G  S  V  N  R  P  T  F  T  K  E  M  S  N  P  L  *  I  *  E  Y  N  I  Q  R  E  T  T  S  T  N  S  F  G  I  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0215P04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="+" PGL_start="98935" PGL_stop="103747"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98935" e_stop="99679"/>
            <exon e_start="101694" e_stop="101965"/>
            <exon e_start="103558" e_stop="103747"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="98935" e_stop="99679" e_length="745"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="99680" i_stop="101693" i_length="2014"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101694" e_stop="101965" e_length="272"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="101966" i_stop="103557" i_length="1592"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="103558" e_stop="103747" e_length="190"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98935" stop="99617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98936" stop="99541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98936" stop="99498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99244" stop="99679"/>
              <exon start="101694" stop="101777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99452" stop="99679"/>
              <exon start="101694" stop="101726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99471" stop="99679"/>
              <exon start="101694" stop="101771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99475" stop="99679"/>
              <exon start="101694" stop="101965"/>
              <exon start="103558" stop="103747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99603" stop="99679"/>
              <exon start="101694" stop="101965"/>
              <exon start="103558" stop="103593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200066" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTCCTTTTACTATATTCTAAAAATATGACACATAATATTTTAAGTACTATATTAAGAAATAAAATTAGTTTGTCTTCTTAAACTCAAGGGTCGTTGTTGGATGCTTTTTACACTATTATCTTAATTTTAAAATTCTCTTTTTATTTTTGTGATACACTTTTATTAGCTAGCCACCAAATAACCAAAATATCACGATATATATAAATTTATTCAAAATAATTTCTATTATATTTTATATATTCCAAAACTTTTCATTTTTTTTTATAAATTTTGTGTCTAGTCAACATGAATACATATAACTTTTTCAGTAAGTTTTATTAAATACGATTATATAGATCAAAAAAGAAATTTTTTATTAAATTTTATTTCAGTTCAAAATAGCGTAATTTAAAATAATATTGAAATTAGCCATGGGACTATAATAACTAGTGCTTATATATAGATGTAGTAGAGTACCATTTTAGTGATGTTAATAGGGAAATATTTTTATCAACCACCTCCCCTTGGACTTTGATACACTTAAATCTCCTCTTTCTTTTCATTTCTCTTCAAAATGAGTAACAACAACAGCTTGAGCATGGTGGAATCCAAATTACCACCAGGATTTAGATTCCATCCAAGAGATGAAGAACTTATTTGTGATTACTTAATGAAGAAAGTTGATCAACAATCCGAATATCAACAACAATACCCTCTTCTCATAGAAGTTGACCTCAATAAATCTGAACCATGGGAAATTCCTG : AAGTGGCATGTGTTGGAGGGAAGGAGTGGTACTTCTACAGCCAACGTGACCGAAAATACGCGACGGGGCTCCGAACAAACAGAGCCACCGTATCTGGTTACTGGAAAGCCACCGGAAAAGATCGTGCAATCATCAGAAAAGGAAGTCTAGTAGGAATGAGAAAAACCCTAGTTTTCTATCAAGGGAGAGCCCCAAAAGGAAGAAAAAGTGACTGGGTTATGCATGAATTCCGCCTAGAACTTCCCATTCGTCCTCAAATTTCTTCTATCAAG : GAGGATTGGGTATTATGCCGAGTATTTCACAAGAAGAAGGAATTACTTGCTACAAAGCAAGAAATTGGAAGCAACAATATATACTACGATAACGATACAATAAGTTGTTCATCTCTACCACCATTAATGGATCCTTACATTACTTTCGACCAAACAAACCCTAACAACAATAATATGAATATGAATGAAT</gDNA_template>
            <first_frame> F  S  F  Y  Y  I  L  K  I  *  H  I  I  F  *  V  L  Y  *  E  I  K  L  V  C  L  L  K  L  K  G  R  C  W  M  L  F  T  L  L  S  *  F  *  N  S  L  F  I  F  V  I  H  F  Y  *  L  A  T  K  *  P  K  Y  H  D  I  Y  K  F  I  Q  N  N  F  Y  Y  I  L  Y  I  P  K  L  F  I  F  F  Y  K  F  C  V  *  S  T  *  I  H  I  T  F  S  V  S  F  I  K  Y  D  Y  I  D  Q  K  R  N  F  L  L  N  F  I  S  V  Q  N  S  V  I  *  N  N  I  E  I  S  H  G  T  I  I  T  S  A  Y  I  *  M  *  *  S  T  I  L  V  M  L  I  G  K  Y  F  Y  Q  P  P  P  L  G  L  *  Y  T  *  I  S  S  F  F  S  F  L  F  K  M  S  N  N  N  S  L  S  M  V  E  S  K  L  P  P  G  F  R  F  H  P  R  D  E  E  L  I  C  D  Y  L  M  K  K  V  D  Q  Q  S  E  Y  Q  Q  Q  Y  P  L  L  I  E  V  D  L  N  K  S  E  P  W  E  I  P   : E  V  A  C  V  G  G  K  E  W  Y  F  Y  S  Q  R  D  R  K  Y  A  T  G  L  R  T  N  R  A  T  V  S  G  Y  W  K  A  T  G  K  D  R  A  I  I  R  K  G  S  L  V  G  M  R  K  T  L  V  F  Y  Q  G  R  A  P  K  G  R  K  S  D  W  V  M  H  E  F  R  L  E  L  P  I  R  P  Q  I  S  S  I  K  :  E  D  W  V  L  C  R  V  F  H  K  K  K  E  L  L  A  T  K  Q  E  I  G  S  N  N  I  Y  Y  D  N  D  T  I  S  C  S  S  L  P  P  L  M  D  P  Y  I  T  F  D  Q  T  N  P  N  N  N  N  M  N  M  N  E  </first_frame>
            <second_frame>  F  P  F  T  I  F  *  K  Y  D  T  *  Y  F  K  Y  Y  I  K  K  *  N  *  F  V  F  L  N  S  R  V  V  V  G  C  F  L  H  Y  Y  L  N  F  K  I  L  F  L  F  L  *  Y  T  F  I  S  *  P  P  N  N  Q  N  I  T  I  Y  I  N  L  F  K  I  I  S  I  I  F  Y  I  F  Q  N  F  S  F  F  F  I  N  F  V  S  S  Q  H  E  Y  I  *  L  F  Q  *  V  L  L  N  T  I  I  *  I  K  K  E  I  F  Y  *  I  L  F  Q  F  K  I  A  *  F  K  I  I  L  K  L  A  M  G  L  *  *  L  V  L  I  Y  R  C  S  R  V  P  F  *  *  C  *  *  G  N  I  F  I  N  H  L  P  L  D  F  D  T  L  K  S  P  L  S  F  H  F  S  S  K  *  V  T  T  T  A  *  A  W  W  N  P  N  Y  H  Q  D  L  D  S  I  Q  E  M  K  N  L  F  V  I  T  *  *  R  K  L  I  N  N  P  N  I  N  N  N  T  L  F  S  *  K  L  T  S  I  N  L  N  H  G  K  F  L  :  K  W  H  V  L  E  G  R  S  G  T  S  T  A  N  V  T  E  N  T  R  R  G  S  E  Q  T  E  P  P  Y  L  V  T  G  K  P  P  E  K  I  V  Q  S  S  E  K  E  V  *  *  E  *  E  K  P  *  F  S  I  K  G  E  P  Q  K  E  E  K  V  T  G  L  C  M  N  S  A  *  N  F  P  F  V  L  K  F  L  L  S  R :   R  I  G  Y  Y  A  E  Y  F  T  R  R  R  N  Y  L  L  Q  S  K  K  L  E  A  T  I  Y  T  T  I  T  I  Q  *  V  V  H  L  Y  H  H  *  W  I  L  T  L  L  S  T  K  Q  T  L  T  T  I  I  *  I  *  M  N </second_frame>
            <third_frame>   F  L  L  L  Y  S  K  N  M  T  H  N  I  L  S  T  I  L  R  N  K  I  S  L  S  S  *  T  Q  G  S  L  L  D  A  F  Y  T  I  I  L  I  L  K  F  S  F  Y  F  C  D  T  L  L  L  A  S  H  Q  I  T  K  I  S  R  Y  I  *  I  Y  S  K  *  F  L  L  Y  F  I  Y  S  K  T  F  H  F  F  L  *  I  L  C  L  V  N  M  N  T  Y  N  F  F  S  K  F  Y  *  I  R  L  Y  R  S  K  K  K  F  F  I  K  F  Y  F  S  S  K  *  R  N  L  K  *  Y  *  N  *  P  W  D  Y  N  N  *  C  L  Y  I  D  V  V  E  Y  H  F  S  D  V  N  R  E  I  F  L  S  T  T  S  P  W  T  L  I  H  L  N  L  L  F  L  F  I  S  L  Q  N  E  *  Q  Q  Q  L  E  H  G  G  I  Q  I  T  T  R  I  *  I  P  S  K  R  *  R  T  Y  L  *  L  L  N  E  E  S  *  S  T  I  R  I  S  T  T  I  P  S  S  H  R  S  *  P  Q  *  I  *  T  M  G  N  S  * :   S  G  M  C  W  R  E  G  V  V  L  L  Q  P  T  *  P  K  I  R  D  G  A  P  N  K  Q  S  H  R  I  W  L  L  E  S  H  R  K  R  S  C  N  H  Q  K  R  K  S  S  R  N  E  K  N  P  S  F  L  S  R  E  S  P  K  R  K  K  K  *  L  G  Y  A  *  I  P  P  R  T  S  H  S  S  S  N  F  F  Y  Q   : G  G  L  G  I  M  P  S  I  S  Q  E  E  G  I  T  C  Y  K  A  R  N  W  K  Q  Q  Y  I  L  R  *  R  Y  N  K  L  F  I  S  T  T  I  N  G  S  L  H  Y  F  R  P  N  K  P  *  Q  Q  *  Y  E  Y  E  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="+"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99460" stop="99679"/>
                    <exon start="101694" stop="101965"/>
                    <exon start="103558" stop="103746"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>681</number_coding_nucleotides>
                  <number_encoded_amino_acids>227</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISSFFSFLFKMSNNNSLSMVESKLPPGFRFHPRDEELICDYLMKKVDQQSEYQQQYPLLIEVDLNKSEPWEIPEVACVGGKEWYFYSQRDRKYATGLRTNRATVSGYWKATGKDRAIIRKGSLVGMRKTLVFYQGRAPKGRKSDWVMHEFRLELPIRPQISSIKEDWVLCRVFHKKKELLATKQEIGSNNIYYDNDTISCSSLPPLMDPYITFDQTNPNNNNMNMNE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="+" PGL_start="103781" PGL_stop="104329"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103781" e_stop="104329"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="103781" e_stop="104329" e_length="549"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103781" stop="104329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395596" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACCCCTAACCAAACTTTCACTTCCCATAGCCACCACCTCCCCTCCGCCACAACCGCCATCGGATCTACCGCATACGGTGGTTTTCCAGCTGATATTGGAAATTACCTAAATGCCACTGCAACATCCTCTACGTGTGATAATAACAAAGTAATTAGAGCTGTTTTAAGTCATTTGAGTACCAAGAATAATATTATTATGGAAGGTAATAATAGCAATAACAACAATATTATCAATCCTGCCCAAAATATAAAAGGAGGAAATTCACCTAGCTTTGGTGAAGGAAGTTCTGAAACTAGCTTTTTATCTGAGGTGGGATATCCTACAATGTGGAACAATTATTGATTTTTGAGAGAAAATATTCTACTTAGATGTGTGATATAATATATGACAAGTCTTGTTTTAGTTGCTAGTATTATATTGTAATCTTAGAATATATATATATAACTATACTAGCTAGATTAATTTCCAATGCATGTAATTCCAATAATGATACTTTCCTAGTGGTTAATGTATATAATTGTCTCCTAGATAGATTGGAATTCTCCGT</gDNA_template>
            <first_frame> S  P  L  T  K  L  S  L  P  I  A  T  T  S  P  P  P  Q  P  P  S  D  L  P  H  T  V  V  F  Q  L  I  L  E  I  T  *  M  P  L  Q  H  P  L  R  V  I  I  T  K  *  L  E  L  F  *  V  I  *  V  P  R  I  I  L  L  W  K  V  I  I  A  I  T  T  I  L  S  I  L  P  K  I  *  K  E  E  I  H  L  A  L  V  K  E  V  L  K  L  A  F  Y  L  R  W  D  I  L  Q  C  G  T  I  I  D  F  *  E  K  I  F  Y  L  D  V  *  Y  N  I  *  Q  V  L  F  *  L  L  V  L  Y  C  N  L  R  I  Y  I  Y  N  Y  T  S  *  I  N  F  Q  C  M  *  F  Q  *  *  Y  F  P  S  G  *  C  I  *  L  S  P  R  *  I  G  I  L  R </first_frame>
            <second_frame>  H  P  *  P  N  F  H  F  P  *  P  P  P  P  L  R  H  N  R  H  R  I  Y  R  I  R  W  F  S  S  *  Y  W  K  L  P  K  C  H  C  N  I  L  Y  V  *  *  *  Q  S  N  *  S  C  F  K  S  F  E  Y  Q  E  *  Y  Y  Y  G  R  *  *  *  Q  *  Q  Q  Y  Y  Q  S  C  P  K  Y  K  R  R  K  F  T  *  L  W  *  R  K  F  *  N  *  L  F  I  *  G  G  I  S  Y  N  V  E  Q  L  L  I  F  E  R  K  Y  S  T  *  M  C  D  I  I  Y  D  K  S  C  F  S  C  *  Y  Y  I  V  I  L  E  Y  I  Y  I  T  I  L  A  R  L  I  S  N  A  C  N  S  N  N  D  T  F  L  V  V  N  V  Y  N  C  L  L  D  R  L  E  F  S   </second_frame>
            <third_frame>   T  P  N  Q  T  F  T  S  H  S  H  H  L  P  S  A  T  T  A  I  G  S  T  A  Y  G  G  F  P  A  D  I  G  N  Y  L  N  A  T  A  T  S  S  T  C  D  N  N  K  V  I  R  A  V  L  S  H  L  S  T  K  N  N  I  I  M  E  G  N  N  S  N  N  N  N  I  I  N  P  A  Q  N  I  K  G  G  N  S  P  S  F  G  E  G  S  S  E  T  S  F  L  S  E  V  G  Y  P  T  M  W  N  N  Y  *  F  L  R  E  N  I  L  L  R  C  V  I  *  Y  M  T  S  L  V  L  V  A  S  I  I  L  *  S  *  N  I  Y  I  *  L  Y  *  L  D  *  F  P  M  H  V  I  P  I  M  I  L  S  *  W  L  M  Y  I  I  V  S  *  I  D  W  N  S  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="+"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103783" stop="104124"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPNQTFTSHSHHLPSATTAIGSTAYGGFPADIGNYLNATATSSTCDNNKVIRAVLSHLSTKNNIIMEGNNSNNNNIINPAQNIKGGNSPSFGEGSSETSFLSEVGYPTMWNNY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="+" PGL_start="107884" PGL_stop="112697"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107884" e_stop="108227"/>
            <exon e_start="108329" e_stop="108420"/>
            <exon e_start="108616" e_stop="108691"/>
            <exon e_start="109037" e_stop="109099"/>
            <exon e_start="109413" e_stop="109542"/>
            <exon e_start="109669" e_stop="109754"/>
            <exon e_start="109845" e_stop="109970"/>
            <exon e_start="110289" e_stop="110393"/>
            <exon e_start="110483" e_stop="110539"/>
            <exon e_start="110960" e_stop="111022"/>
            <exon e_start="111096" e_stop="111172"/>
            <exon e_start="111649" e_stop="111721"/>
            <exon e_start="112151" e_stop="112697"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.850" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.835" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.905" e_score="1.000"/>
          <exon-intron don_prob="0.803" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="107884" e_stop="108227" e_length="344"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.970">
            <gDNA_intron_boundary i_start="108228" i_stop="108328" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="108329" e_stop="108420" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.987">
            <gDNA_intron_boundary i_start="108421" i_stop="108615" i_length="195"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="108616" e_stop="108691" e_length="76"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="108692" i_stop="109036" i_length="345"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="109037" e_stop="109099" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.850" acc_prob="0.987">
            <gDNA_intron_boundary i_start="109100" i_stop="109412" i_length="313"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="109413" e_stop="109542" e_length="130"/>
          </exon>
          <intron i_serial="5" don_prob="0.977" acc_prob="0.835">
            <gDNA_intron_boundary i_start="109543" i_stop="109668" i_length="126"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="109669" e_stop="109754" e_length="86"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="109755" i_stop="109844" i_length="90"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="109845" e_stop="109970" e_length="126"/>
          </exon>
          <intron i_serial="7" don_prob="0.900" acc_prob="0.905">
            <gDNA_intron_boundary i_start="109971" i_stop="110288" i_length="318"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="110289" e_stop="110393" e_length="105"/>
          </exon>
          <intron i_serial="8" don_prob="0.803" acc_prob="1.000">
            <gDNA_intron_boundary i_start="110394" i_stop="110482" i_length="89"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="110483" e_stop="110539" e_length="57"/>
          </exon>
          <intron i_serial="9" don_prob="0.974" acc_prob="0.968">
            <gDNA_intron_boundary i_start="110540" i_stop="110959" i_length="420"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="110960" e_stop="111022" e_length="63"/>
          </exon>
          <intron i_serial="10" don_prob="0.928" acc_prob="0.983">
            <gDNA_intron_boundary i_start="111023" i_stop="111095" i_length="73"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="111096" e_stop="111172" e_length="77"/>
          </exon>
          <intron i_serial="11" don_prob="0.939" acc_prob="0.948">
            <gDNA_intron_boundary i_start="111173" i_stop="111648" i_length="476"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="111649" e_stop="111721" e_length="73"/>
          </exon>
          <intron i_serial="12" don_prob="0.964" acc_prob="0.000">
            <gDNA_intron_boundary i_start="111722" i_stop="112150" i_length="429"/>
          </intron>
          <exon e_serial="13" e_score="0.998">
            <gDNA_exon_boundary e_start="112151" e_stop="112697" e_length="547"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107884" stop="108227"/>
              <exon start="108329" stop="108420"/>
              <exon start="108616" stop="108691"/>
              <exon start="109037" stop="109099"/>
              <exon start="109413" stop="109542"/>
              <exon start="109669" stop="109729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107898" stop="108227"/>
              <exon start="108329" stop="108420"/>
              <exon start="108616" stop="108691"/>
              <exon start="109037" stop="109099"/>
              <exon start="109413" stop="109542"/>
              <exon start="109669" stop="109754"/>
              <exon start="109845" stop="109970"/>
              <exon start="110289" stop="110393"/>
              <exon start="110483" stop="110539"/>
              <exon start="110960" stop="111022"/>
              <exon start="111096" stop="111172"/>
              <exon start="111649" stop="111721"/>
              <exon start="112151" stop="112689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107899" stop="108227"/>
              <exon start="108329" stop="108420"/>
              <exon start="108616" stop="108691"/>
              <exon start="109037" stop="109085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107926" stop="108222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110341" stop="110393"/>
              <exon start="110483" stop="110539"/>
              <exon start="110960" stop="111022"/>
              <exon start="111096" stop="111172"/>
              <exon start="111649" stop="111721"/>
              <exon start="112151" stop="112697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714777" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGGCGCCATGGAACTCCGGCGACAGCATAGCCTAAGCTCCTTCTTCAGCAAGGAGAACTGAGCTTAAGTATAGTAATATCTTTCAATCCGCTTGAACTTTGTAGTCCAAGAGAACGGAGCTTTTAAGCTAGAAACTTTAATGGAGTTAACTTTCCCAGTGAAAGCTCAGTTATTTGGCTCCAAAATTGGTCACAAATCTCTAAGCTACTCAACTTCAGTAAAATTCTACCAGAAAGTATCTCGTCCTCAATTTTCAGCATGTGGAATCAGGGTTCGTTCGGAATTTGACCATAAAATCAATGGCGCTTTCTCTCCTGATTCTGACGCTCGGATTCTCGACCGG : CAAAAAGCATTGGATGCTGCAATGAACGATATAAACAGCTCGTTTGGCAAAGGAAGCGTTACTAGATTGGGTAGTGCTGGCGGAGCTCTGGT : TGAAACTTTTCCGAGTGGCTGCTTGACGCTAGACTTTGCTTTAGGTGGTGGCATTCCCAAAGGCAGAATTGTTGAG : ATATATGGGCCCGAAAGTAGTGGAAAGACTACCTTAGCTCTCCATGCTATTGCAGAAGTACAG : AAGCTAGGAGGCAATGCAATGCTTGTTGATGCTGAGCATGCTTTTGATCCTGCATACTCCAAAGCACTTGGAGTAGATGTAGAGAATTTGATCGTCTGCCAGCCTGATAATGGAGAGATGGCTCTAGAAA : TCGCAGACCGGATGTGTAGATCAGGTGCCGTAGATCTCATTTGCATTGATTCAGTCTCAGCCCTTACTCCACGTGCTGAAATTGAG : GGAGAAATCGGGATGCAGCAAATGGGTTTACAAGCACGCCTGATGAGTCAAGCTTTACGTAAAATGTCAGGCAATGCCTCCAAAGCTGGATGTACTCTTATATTCCTCAATCAGATAAGATACAAG : ATTGGTGTTTATTACGGAAATCCTGAGGTCACAAGTGGAGGGATTGCCTTAAAGTTTTTCGCCTCCGTTCGACTTGAAATCCGTTCCACAGGGAAGATAAAATCT : GCAAAAGGAGACGAGGAAGTGGGTATTAAGGTCCGAGTGAGAGTTCAAAAGAGTAAG : GTTTCTAGACCATACAAGCAAGCAGAATTTGAAATTATGTTTGGAGAAGGAGTGAGCAAGCTG : GGTTGTGTATTAGATTGTGCGGAACTGATTGAGGTGGTGGCTAAGAAAGGTTCATGGTATAACTACGGAGAGCATAG : GCTGGGACAGGGAAGAGAGAAAGCATTGCAATATTTGAGAGAAAATCCTCTTCTCTCTGAAGAAATAGAAAAG : ATGGTTCGGTCATCGGTGCTAGAGACAAACGGGTTTTTAGGCTCTTCTTCATTGAAACATCCACTGCCGCAGCTTCTAGAGGAAGATGCACTTCAAGAGATGCAATAACGCGGATCAGAGTTCTGCTTCAATTGATTATGATAACAGAGCATTTTTCAGCCAACATTGACATCCATATGTGATTCTACATTAGAAATGAGCAAAGTTGGGGACACTGCCAGATTTGCTTTGTATGAGACCATTTCTGTGCACTAGAGATTCTTGAAGAAAGGTGTATATTCTTGTAAGCTAATGGATCTTTGCACGAAGAGGAAGACACATACATCCTGAATTAACCAAACTGAAGAATTAGAGTTAAGGTGGTGAAAAGGAGTGTTAGCTCTTTGCTGCATATTTTGTCTTTGTTTTGGTTGTACTGGTAGCCAAAATTTTGAAAATCTGAAGATTTTTGCTTGTAACATTTGCATTGGAAGTACCACTCTAGTGTTGCGTTGGTATTATTATCCCATTAGCTCTATGCATTAAGAAATCTAGTAAATATTTGTCT</gDNA_template>
            <first_frame> M  A  P  W  N  S  G  D  S  I  A  *  A  P  S  S  A  R  R  T  E  L  K  Y  S  N  I  F  Q  S  A  *  T  L  *  S  K  R  T  E  L  L  S  *  K  L  *  W  S  *  L  S  Q  *  K  L  S  Y  L  A  P  K  L  V  T  N  L  *  A  T  Q  L  Q  *  N  S  T  R  K  Y  L  V  L  N  F  Q  H  V  E  S  G  F  V  R  N  L  T  I  K  S  M  A  L  S  L  L  I  L  T  L  G  F  S  T  G :   K  K  H  W  M  L  Q  *  T  I  *  T  A  R  L  A  K  E  A  L  L  D  W  V  V  L  A  E  L  W   : L  K  L  F  R  V  A  A  *  R  *  T  L  L  *  V  V  A  F  P  K  A  E  L  L  R :   Y  M  G  P  K  V  V  E  R  L  P  *  L  S  M  L  L  Q  K  Y  R :   S  *  E  A  M  Q  C  L  L  M  L  S  M  L  L  I  L  H  T  P  K  H  L  E  *  M  *  R  I  *  S  S  A  S  L  I  M  E  R  W  L  *  K  :  S  Q  T  G  C  V  D  Q  V  P  *  I  S  F  A  L  I  Q  S  Q  P  L  L  H  V  L  K  L  R :   E  K  S  G  C  S  K  W  V  Y  K  H  A  *  *  V  K  L  Y  V  K  C  Q  A  M  P  P  K  L  D  V  L  L  Y  S  S  I  R  *  D  T  R :   L  V  F  I  T  E  I  L  R  S  Q  V  E  G  L  P  *  S  F  S  P  P  F  D  L  K  S  V  P  Q  G  R  *  N  L :   Q  K  E  T  R  K  W  V  L  R  S  E  *  E  F  K  R  V  R :   F  L  D  H  T  S  K  Q  N  L  K  L  C  L  E  K  E  *  A  S  W :   V  V  Y  *  I  V  R  N  *  L  R  W  W  L  R  K  V  H  G  I  T  T  E  S  I   : G  W  D  R  E  E  R  K  H  C  N  I  *  E  K  I  L  F  S  L  K  K  *  K  R :   W  F  G  H  R  C  *  R  Q  T  G  F  *  A  L  L  H  *  N  I  H  C  R  S  F  *  R  K  M  H  F  K  R  C  N  N  A  D  Q  S  S  A  S  I  D  Y  D  N  R  A  F  F  S  Q  H  *  H  P  Y  V  I  L  H  *  K  *  A  K  L  G  T  L  P  D  L  L  C  M  R  P  F  L  C  T  R  D  S  *  R  K  V  Y  I  L  V  S  *  W  I  F  A  R  R  G  R  H  I  H  P  E  L  T  K  L  K  N  *  S  *  G  G  E  K  E  C  *  L  F  A  A  Y  F  V  F  V  L  V  V  L  V  A  K  I  L  K  I  *  R  F  L  L  V  T  F  A  L  E  V  P  L  *  C  C  V  G  I  I  I  P  L  A  L  C  I  K  K  S  S  K  Y  L  S </first_frame>
            <second_frame>  W  R  H  G  T  P  A  T  A  *  P  K  L  L  L  Q  Q  G  E  L  S  L  S  I  V  I  S  F  N  P  L  E  L  C  S  P  R  E  R  S  F  *  A  R  N  F  N  G  V  N  F  P  S  E  S  S  V  I  W  L  Q  N  W  S  Q  I  S  K  L  L  N  F  S  K  I  L  P  E  S  I  S  S  S  I  F  S  M  W  N  Q  G  S  F  G  I  *  P  *  N  Q  W  R  F  L  S  *  F  *  R  S  D  S  R  P   : A  K  S  I  G  C  C  N  E  R  Y  K  Q  L  V  W  Q  R  K  R  Y  *  I  G  *  C  W  R  S  S  G  :  *  N  F  S  E  W  L  L  D  A  R  L  C  F  R  W  W  H  S  Q  R  Q  N  C  *   : D  I  W  A  R  K  *  W  K  D  Y  L  S  S  P  C  Y  C  R  S  T   : E  A  R  R  Q  C  N  A  C  *  C  *  A  C  F  *  S  C  I  L  Q  S  T  W  S  R  C  R  E  F  D  R  L  P  A  *  *  W  R  D  G  S  R  N :   R  R  P  D  V  *  I  R  C  R  R  S  H  L  H  *  F  S  L  S  P  Y  S  T  C  *  N  *   : G  R  N  R  D  A  A  N  G  F  T  S  T  P  D  E  S  S  F  T  *  N  V  R  Q  C  L  Q  S  W  M  Y  S  Y  I  P  Q  S  D  K  I  Q   : D  W  C  L  L  R  K  S  *  G  H  K  W  R  D  C  L  K  V  F  R  L  R  S  T  *  N  P  F  H  R  E  D  K  I   : C  K  R  R  R  G  S  G  Y  *  G  P  S  E  S  S  K  E  *   : G  F  *  T  I  Q  A  S  R  I  *  N  Y  V  W  R  R  S  E  Q  A   : G  L  C  I  R  L  C  G  T  D  *  G  G  G  *  E  R  F  M  V  *  L  R  R  A  *  :  A  G  T  G  K  R  E  S  I  A  I  F  E  R  K  S  S  S  L  *  R  N  R  K   : D  G  S  V  I  G  A  R  D  K  R  V  F  R  L  F  F  I  E  T  S  T  A  A  A  S  R  G  R  C  T  S  R  D  A  I  T  R  I  R  V  L  L  Q  L  I  M  I  T  E  H  F  S  A  N  I  D  I  H  M  *  F  Y  I  R  N  E  Q  S  W  G  H  C  Q  I  C  F  V  *  D  H  F  C  A  L  E  I  L  E  E  R  C  I  F  L  *  A  N  G  S  L  H  E  E  E  D  T  Y  I  L  N  *  P  N  *  R  I  R  V  K  V  V  K  R  S  V  S  S  L  L  H  I  L  S  L  F  W  L  Y  W  *  P  K  F  *  K  S  E  D  F  C  L  *  H  L  H  W  K  Y  H  S  S  V  A  L  V  L  L  S  H  *  L  Y  A  L  R  N  L  V  N  I  C   </second_frame>
            <third_frame>   G  A  M  E  L  R  R  Q  H  S  L  S  S  F  F  S  K  E  N  *  A  *  V  *  *  Y  L  S  I  R  L  N  F  V  V  Q  E  N  G  A  F  K  L  E  T  L  M  E  L  T  F  P  V  K  A  Q  L  F  G  S  K  I  G  H  K  S  L  S  Y  S  T  S  V  K  F  Y  Q  K  V  S  R  P  Q  F  S  A  C  G  I  R  V  R  S  E  F  D  H  K  I  N  G  A  F  S  P  D  S  D  A  R  I  L  D  R  :  Q  K  A  L  D  A  A  M  N  D  I  N  S  S  F  G  K  G  S  V  T  R  L  G  S  A  G  G  A  L  V :   E  T  F  P  S  G  C  L  T  L  D  F  A  L  G  G  G  I  P  K  G  R  I  V  E  :  I  Y  G  P  E  S  S  G  K  T  T  L  A  L  H  A  I  A  E  V  Q  :  K  L  G  G  N  A  M  L  V  D  A  E  H  A  F  D  P  A  Y  S  K  A  L  G  V  D  V  E  N  L  I  V  C  Q  P  D  N  G  E  M  A  L  E   : I  A  D  R  M  C  R  S  G  A  V  D  L  I  C  I  D  S  V  S  A  L  T  P  R  A  E  I  E  :  G  E  I  G  M  Q  Q  M  G  L  Q  A  R  L  M  S  Q  A  L  R  K  M  S  G  N  A  S  K  A  G  C  T  L  I  F  L  N  Q  I  R  Y  K  :  I  G  V  Y  Y  G  N  P  E  V  T  S  G  G  I  A  L  K  F  F  A  S  V  R  L  E  I  R  S  T  G  K  I  K  S  :  A  K  G  D  E  E  V  G  I  K  V  R  V  R  V  Q  K  S  K  :  V  S  R  P  Y  K  Q  A  E  F  E  I  M  F  G  E  G  V  S  K  L  :  G  C  V  L  D  C  A  E  L  I  E  V  V  A  K  K  G  S  W  Y  N  Y  G  E  H  R :   L  G  Q  G  R  E  K  A  L  Q  Y  L  R  E  N  P  L  L  S  E  E  I  E  K  :  M  V  R  S  S  V  L  E  T  N  G  F  L  G  S  S  S  L  K  H  P  L  P  Q  L  L  E  E  D  A  L  Q  E  M  Q  *  R  G  S  E  F  C  F  N  *  L  *  *  Q  S  I  F  Q  P  T  L  T  S  I  C  D  S  T  L  E  M  S  K  V  G  D  T  A  R  F  A  L  Y  E  T  I  S  V  H  *  R  F  L  K  K  G  V  Y  S  C  K  L  M  D  L  C  T  K  R  K  T  H  T  S  *  I  N  Q  T  E  E  L  E  L  R  W  *  K  G  V  L  A  L  C  C  I  F  C  L  C  F  G  C  T  G  S  Q  N  F  E  N  L  K  I  F  A  C  N  I  C  I  G  S  T  T  L  V  L  R  W  Y  Y  Y  P  I  S  S  M  H  *  E  I  *  *  I  F  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="+"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107961" stop="108227"/>
                    <exon start="108329" stop="108420"/>
                    <exon start="108616" stop="108691"/>
                    <exon start="109037" stop="109099"/>
                    <exon start="109413" stop="109542"/>
                    <exon start="109669" stop="109754"/>
                    <exon start="109845" stop="109970"/>
                    <exon start="110289" stop="110393"/>
                    <exon start="110483" stop="110539"/>
                    <exon start="110960" stop="111022"/>
                    <exon start="111096" stop="111172"/>
                    <exon start="111649" stop="111721"/>
                    <exon start="112151" stop="112258"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1320</number_coding_nucleotides>
                  <number_encoded_amino_acids>440</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YLSIRLNFVVQENGAFKLETLMELTFPVKAQLFGSKIGHKSLSYSTSVKFYQKVSRPQFSACGIRVRSEFDHKINGAFSPDSDARILDRQKALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDFALGGGIPKGRIVEIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAVDLICIDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSAKGDEEVGIKVRVRVQKSKVSRPYKQAEFEIMFGEGVSKLGCVLDCAELIEVVAKKGSWYNYGEHRLGQGREKALQYLRENPLLSEEIEKMVRSSVLETNGFLGSSSLKHPLPQLLEEDALQEMQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="26" PGL_strand="-" PGL_start="114371" PGL_stop="112024"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="114371" e_stop="114177"/>
            <exon e_start="113564" e_stop="113506"/>
            <exon e_start="113349" e_stop="113294"/>
            <exon e_start="113217" e_stop="113165"/>
            <exon e_start="113053" e_stop="112681"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="114371" e_stop="114177" e_length="195"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="113564" e_stop="113506" e_length="59"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.980">
            <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="113349" e_stop="113294" e_length="56"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="113217" e_stop="113165" e_length="53"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="113053" e_stop="112681" e_length="373"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114371" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114360" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114358" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114358" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114358" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114357" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114357" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114356" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114356" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
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              <exon start="113526" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230491" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113524" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222803" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113515" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226574" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113514" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230467" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113513" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222550" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113513" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217911" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113512" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285747" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113511" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222892" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113511" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222894" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113510" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236712" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113346" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218131" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113346" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232651" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113344" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232387" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113341" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113340" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113323" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113322" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230896" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113306" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113206" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113194" stop="113165"/>
              <exon start="113053" stop="112836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232463" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113033" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227868" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113027" stop="112836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237171" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113015" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226297" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113015" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226662" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112999" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226668" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATAAATTGGAGCACAAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG : GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG : GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG : TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG : GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGTGTAAGGAATTCCTGCAACGATCTCAAATAACAATAATATATGAGTTCACAGACAAATATTTACTAG</gDNA_template>
            <first_frame> N  K  L  E  H  K  K  R  K  G  N  R  R  K  W  Q  A  Q  *  *  A  H  *  A  *  S  Q  L  S  L  W  R  K  Y  Q  *  K  G  F  H  H  L  L  D  L  L  L  P  S  K  L  W  L  V  V  L  R  S  L  R  L  T  N  P  M  :  E  L  M  E  A  W  P  *  E  M  G  L  M  P  Q  A  G  S  P  R :   E  R  V  C  T  N  M  L  T  N  M  E  L  M  L  M  D  T   : V  P  S  T  T  R  M  N  G  L  Q  V  V  M  S  M  L  E  :  V  P  L  A  *  P  Y  G  R  *  P  C  L  A  F  L  Q  E  V  L  S  L  S  T  T  Q  V  L  W  R  N  R  C  Y  P  C  I  V  L  L  S  L  S  C  I  P  C  Y  L  F  K  I  F  L  G  I  F  I  N  M  *  L  L  *  F  Y  C  G  *  Y  Y  I  *  C  C  C  F  R  F  L  *  I  F  *  V  *  S  *  L  D  C  Q  T  V  I  S  *  S  N  I  L  K  C  K  E  F  L  Q  R  S  Q  I  T  I  I  Y  E  F  T  D  K  Y  L  L  </first_frame>
            <second_frame>  I  N  W  S  T  R  R  E  K  V  I  G  E  N  G  K  H  S  N  E  L  I  E  P  K  A  N  F  H  S  G  E  N  I  S  E  R  A  S  I  T  Y  *  I  F  F  F  L  Q  S  C  G  *  W  C  *  E  A  *  D  *  Q  T  L  W :   N  *  W  K  H  G  L  E  R  W  G  *  C  L  R  Q  E  A  Q   : G  K  G  C  V  P  I  C  *  Q  I  W  S  *  C  *  W  I  Q  :  S  H  L  Q  H  G  *  M  V  S  K  W  *  C  L  C  W  R :   Y  H  W  L  S  H  M  G  G  D  L  A  W  H  S  C  R  R  C  S  P  C  L  Q  H  K  C  F  G  A  I  D  V  I  L  V  L  Y  Y  *  V  *  V  V  F  H  V  I  F  S  K  Y  F  L  A  S  S  L  I  C  N  C  C  D  F  T  V  D  N  I  T  S  N  V  A  V  L  G  S  Y  K  S  F  K  F  S  R  D  W  I  A  K  Q  L  *  A  N  P  I  F  *  S  V  R  N  S  C  N  D  L  K  *  Q  *  Y  M  S  S  Q  T  N  I  Y  * </second_frame>
            <third_frame>   *  I  G  A  Q  E  E  K  R  *  *  E  K  M  A  S  T  V  M  S  S  L  S  L  K  P  T  F  T  L  E  K  I  S  V  K  G  L  P  S  L  T  R  S  S  S  S  F  K  V  V  A  S  G  V  K  K  L  K  T  D  K  P  Y   : G  I  N  G  S  M  A  L  R  D  G  V  D  A  S  G  R  K  P  K  :  G  K  G  V  Y  Q  Y  V  D  K  Y  G  A  N  V  D  G  Y  S :   P  I  Y  N  T  D  E  W  S  P  S  G  D  V  Y  V  G   : G  T  T  G  L  A  I  W  A  V  T  L  L  G  I  L  A  G  G  A  L  L  V  Y  N  T  S  A  L  A  Q  *  M  L  S  L  Y  C  T  I  K  F  K  L  Y  S  M  L  S  F  Q  N  I  S  W  H  L  H  *  Y  V  I  A  V  I  L  L  W  I  I  L  H  L  M  L  L  F  *  V  L  I  N  L  L  S  L  V  V  I  G  L  P  N  S  Y  K  L  I  Q  Y  F  E  V  *  G  I  P  A  T  I  S  N  N  N  N  I  *  V  H  R  Q  I  F  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="-"/>
                <serials PGL_serial="26" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114336" stop="114177"/>
                    <exon start="113564" stop="113506"/>
                    <exon start="113349" stop="113294"/>
                    <exon start="113217" stop="113165"/>
                    <exon start="113053" stop="112959"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKMASTVMSSLSLKPTFTLEKISVKGLPSLTRSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSALAQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="114371" e_stop="114177"/>
            <exon e_start="113564" e_stop="113506"/>
            <exon e_start="113349" e_stop="113294"/>
            <exon e_start="113217" e_stop="113165"/>
            <exon e_start="113053" e_stop="112821"/>
            <exon e_start="112565" e_stop="112551"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.733"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="114371" e_stop="114177" e_length="195"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="113564" e_stop="113506" e_length="59"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.980">
            <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="113349" e_stop="113294" e_length="56"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="113217" e_stop="113165" e_length="53"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="113053" e_stop="112821" e_length="233"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="112820" i_stop="112566" i_length="255"/>
          </intron>
          <exon e_serial="6" e_score="0.733">
            <gDNA_exon_boundary e_start="112565" e_stop="112551" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114371" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114360" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114358" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114356" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114356" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114356" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114354" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114353" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114352" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114352" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114352" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114351" stop="114177"/>
              <exon start="113564" stop="113506"/>
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        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATAAATTGGAGCACAAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG : GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG : GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG : TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG : GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG : TACAACCAAAACAAA</gDNA_template>
            <first_frame> N  K  L  E  H  K  K  R  K  G  N  R  R  K  W  Q  A  Q  *  *  A  H  *  A  *  S  Q  L  S  L  W  R  K  Y  Q  *  K  G  F  H  H  L  L  D  L  L  L  P  S  K  L  W  L  V  V  L  R  S  L  R  L  T  N  P  M  :  E  L  M  E  A  W  P  *  E  M  G  L  M  P  Q  A  G  S  P  R :   E  R  V  C  T  N  M  L  T  N  M  E  L  M  L  M  D  T   : V  P  S  T  T  R  M  N  G  L  Q  V  V  M  S  M  L  E  :  V  P  L  A  *  P  Y  G  R  *  P  C  L  A  F  L  Q  E  V  L  S  L  S  T  T  Q  V  L  W  R  N  R  C  Y  P  C  I  V  L  L  S  L  S  C  I  P  C  Y  L  F  K  I  F  L  G  I  F  I  N  M  *  L  L  *  F  Y  C  G  *  Y  Y  I  *  C  C  C  F  S :   T  T  K  T   </first_frame>
            <second_frame>  I  N  W  S  T  R  R  E  K  V  I  G  E  N  G  K  H  S  N  E  L  I  E  P  K  A  N  F  H  S  G  E  N  I  S  E  R  A  S  I  T  Y  *  I  F  F  F  L  Q  S  C  G  *  W  C  *  E  A  *  D  *  Q  T  L  W :   N  *  W  K  H  G  L  E  R  W  G  *  C  L  R  Q  E  A  Q   : G  K  G  C  V  P  I  C  *  Q  I  W  S  *  C  *  W  I  Q  :  S  H  L  Q  H  G  *  M  V  S  K  W  *  C  L  C  W  R :   Y  H  W  L  S  H  M  G  G  D  L  A  W  H  S  C  R  R  C  S  P  C  L  Q  H  K  C  F  G  A  I  D  V  I  L  V  L  Y  Y  *  V  *  V  V  F  H  V  I  F  S  K  Y  F  L  A  S  S  L  I  C  N  C  C  D  F  T  V  D  N  I  T  S  N  V  A  V  L   : V  Q  P  K  Q  </second_frame>
            <third_frame>   *  I  G  A  Q  E  E  K  R  *  *  E  K  M  A  S  T  V  M  S  S  L  S  L  K  P  T  F  T  L  E  K  I  S  V  K  G  L  P  S  L  T  R  S  S  S  S  F  K  V  V  A  S  G  V  K  K  L  K  T  D  K  P  Y   : G  I  N  G  S  M  A  L  R  D  G  V  D  A  S  G  R  K  P  K  :  G  K  G  V  Y  Q  Y  V  D  K  Y  G  A  N  V  D  G  Y  S :   P  I  Y  N  T  D  E  W  S  P  S  G  D  V  Y  V  G   : G  T  T  G  L  A  I  W  A  V  T  L  L  G  I  L  A  G  G  A  L  L  V  Y  N  T  S  A  L  A  Q  *  M  L  S  L  Y  C  T  I  K  F  K  L  Y  S  M  L  S  F  Q  N  I  S  W  H  L  H  *  Y  V  I  A  V  I  L  L  W  I  I  L  H  L  M  L  L  F  *  :  Y  N  Q  N  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="-"/>
                <serials PGL_serial="26" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114336" stop="114177"/>
                    <exon start="113564" stop="113506"/>
                    <exon start="113349" stop="113294"/>
                    <exon start="113217" stop="113165"/>
                    <exon start="113053" stop="112959"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKMASTVMSSLSLKPTFTLEKISVKGLPSLTRSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSALAQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="114371" e_stop="114177"/>
            <exon e_start="113564" e_stop="113506"/>
            <exon e_start="113349" e_stop="113294"/>
            <exon e_start="113217" e_stop="113165"/>
            <exon e_start="113053" e_stop="112821"/>
            <exon e_start="112553" e_stop="112531"/>
            <exon e_start="112087" e_stop="112024"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.000" e_score="0.652"/>
          <exon-only e_score="0.469"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="114371" e_stop="114177" e_length="195"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="113564" e_stop="113506" e_length="59"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.980">
            <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="113349" e_stop="113294" e_length="56"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="113217" e_stop="113165" e_length="53"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="113053" e_stop="112821" e_length="233"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="112820" i_stop="112554" i_length="267"/>
          </intron>
          <exon e_serial="6" e_score="0.652">
            <gDNA_exon_boundary e_start="112553" e_stop="112531" e_length="23"/>
          </exon>
          <intron i_serial="6" don_prob="0.978" acc_prob="0.000">
            <gDNA_intron_boundary i_start="112530" i_stop="112088" i_length="443"/>
          </intron>
          <exon e_serial="7" e_score="0.469">
            <gDNA_exon_boundary e_start="112087" e_stop="112024" e_length="64"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114371" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114360" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114358" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114356" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114356" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114356" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114354" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114353" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114352" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114352" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114352" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114351" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548401" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114351" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114350" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114350" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114350" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114350" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114350" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114350" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114350" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="113006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114350" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="113016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114350" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114349" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114349" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114349" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114349" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114348" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114348" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114348" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114348" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114348" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114348" stop="114177"/>
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            <referenceDNA id="SGN-E228900" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114223" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226451" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114223" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215170" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114221" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114219" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283767" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114216" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278112" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114205" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114191" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113553" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235093" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113553" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226418" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113552" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234613" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113548" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113541" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113541" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113538" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217789" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113537" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113536" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228996" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113536" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221007" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113536" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230392" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113533" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230828" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113524" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222803" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113515" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226574" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113514" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230467" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113513" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222550" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113513" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217911" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113512" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285747" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113511" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222892" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113511" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222894" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113510" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236712" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113346" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218131" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113346" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232651" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113344" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232387" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113323" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113322" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230896" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113206" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113194" stop="113165"/>
              <exon start="113053" stop="112836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232463" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113033" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227868" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113027" stop="112836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237171" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113015" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226297" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113015" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226662" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112999" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226668" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATAAATTGGAGCACAAGAAGAGAAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG : GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG : GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG : TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG : GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG : AAAGACAAAATATGCAGCAAAGA : AAATCTCTCAATATGTTAATCTAATAACTACGATATAAAAGAATATTATCTTCGTGTATAGGTA</gDNA_template>
            <first_frame> N  K  L  E  H  K  K  R  K  G  N  R  R  K  W  Q  A  Q  *  *  A  H  *  A  *  S  Q  L  S  L  W  R  K  Y  Q  *  K  G  F  H  H  L  L  D  L  L  L  P  S  K  L  W  L  V  V  L  R  S  L  R  L  T  N  P  M  :  E  L  M  E  A  W  P  *  E  M  G  L  M  P  Q  A  G  S  P  R :   E  R  V  C  T  N  M  L  T  N  M  E  L  M  L  M  D  T   : V  P  S  T  T  R  M  N  G  L  Q  V  V  M  S  M  L  E  :  V  P  L  A  *  P  Y  G  R  *  P  C  L  A  F  L  Q  E  V  L  S  L  S  T  T  Q  V  L  W  R  N  R  C  Y  P  C  I  V  L  L  S  L  S  C  I  P  C  Y  L  F  K  I  F  L  G  I  F  I  N  M  *  L  L  *  F  Y  C  G  *  Y  Y  I  *  C  C  C  F  R :   K  T  K  Y  A  A  K   : K  I  S  Q  Y  V  N  L  I  T  T  I  *  K  N  I  I  F  V  Y  R   </first_frame>
            <second_frame>  I  N  W  S  T  R  R  E  K  V  I  G  E  N  G  K  H  S  N  E  L  I  E  P  K  A  N  F  H  S  G  E  N  I  S  E  R  A  S  I  T  Y  *  I  F  F  F  L  Q  S  C  G  *  W  C  *  E  A  *  D  *  Q  T  L  W :   N  *  W  K  H  G  L  E  R  W  G  *  C  L  R  Q  E  A  Q   : G  K  G  C  V  P  I  C  *  Q  I  W  S  *  C  *  W  I  Q  :  S  H  L  Q  H  G  *  M  V  S  K  W  *  C  L  C  W  R :   Y  H  W  L  S  H  M  G  G  D  L  A  W  H  S  C  R  R  C  S  P  C  L  Q  H  K  C  F  G  A  I  D  V  I  L  V  L  Y  Y  *  V  *  V  V  F  H  V  I  F  S  K  Y  F  L  A  S  S  L  I  C  N  C  C  D  F  T  V  D  N  I  T  S  N  V  A  V  L   : E  R  Q  N  M  Q  Q  R  :  K  S  L  N  M  L  I  *  *  L  R  Y  K  R  I  L  S  S  C  I  G  </second_frame>
            <third_frame>   *  I  G  A  Q  E  E  K  R  *  *  E  K  M  A  S  T  V  M  S  S  L  S  L  K  P  T  F  T  L  E  K  I  S  V  K  G  L  P  S  L  T  R  S  S  S  S  F  K  V  V  A  S  G  V  K  K  L  K  T  D  K  P  Y   : G  I  N  G  S  M  A  L  R  D  G  V  D  A  S  G  R  K  P  K  :  G  K  G  V  Y  Q  Y  V  D  K  Y  G  A  N  V  D  G  Y  S :   P  I  Y  N  T  D  E  W  S  P  S  G  D  V  Y  V  G   : G  T  T  G  L  A  I  W  A  V  T  L  L  G  I  L  A  G  G  A  L  L  V  Y  N  T  S  A  L  A  Q  *  M  L  S  L  Y  C  T  I  K  F  K  L  Y  S  M  L  S  F  Q  N  I  S  W  H  L  H  *  Y  V  I  A  V  I  L  L  W  I  I  L  H  L  M  L  L  F  *  :  K  D  K  I  C  S  K  E :   N  L  S  I  C  *  S  N  N  Y  D  I  K  E  Y  Y  L  R  V  *  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="-"/>
                <serials PGL_serial="26" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114336" stop="114177"/>
                    <exon start="113564" stop="113506"/>
                    <exon start="113349" stop="113294"/>
                    <exon start="113217" stop="113165"/>
                    <exon start="113053" stop="112959"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKMASTVMSSLSLKPTFTLEKISVKGLPSLTRSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSALAQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="114348" e_stop="114177"/>
            <exon e_start="113748" e_stop="113733"/>
            <exon e_start="113564" e_stop="113506"/>
            <exon e_start="113349" e_stop="113294"/>
            <exon e_start="113217" e_stop="113165"/>
            <exon e_start="113053" e_stop="112681"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="0.688"/>
          <exon-intron don_prob="1.000" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="114348" e_stop="114177" e_length="172"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="114176" i_stop="113749" i_length="428"/>
          </intron>
          <exon e_serial="2" e_score="0.688">
            <gDNA_exon_boundary e_start="113748" e_stop="113733" e_length="16"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="113732" i_stop="113565" i_length="168"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="113564" e_stop="113506" e_length="59"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.980">
            <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="113349" e_stop="113294" e_length="56"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="113217" e_stop="113165" e_length="53"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="113053" e_stop="112681" e_length="373"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114348" stop="114177"/>
              <exon start="113748" stop="113733"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114319" stop="114177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114313" stop="114177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113556" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113553" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235093" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113553" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226418" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113552" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234613" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113548" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113548" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113541" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113541" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113538" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217789" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113537" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113536" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228996" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113536" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221007" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113536" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230392" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113533" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230828" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113532" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113526" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230491" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113524" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222803" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113515" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226574" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113514" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230467" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113513" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222550" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113513" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217911" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113512" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285747" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113511" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222892" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113511" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222894" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113510" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236712" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113346" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218131" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113346" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232651" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113344" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232387" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113341" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113340" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113323" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113322" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230896" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113306" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113206" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113194" stop="113165"/>
              <exon start="113053" stop="112836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232463" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113033" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227868" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113027" stop="112836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237171" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113015" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226297" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113015" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226662" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112999" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226668" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAGGTAATAGGAGAAAATGGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG : TCTCTCAAACTCTTTG : GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG : GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG : TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG : GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGTGTAAGGAATTCCTGCAACGATCTCAAATAACAATAATATATGAGTTCACAGACAAATATTTACTAG</gDNA_template>
            <first_frame> K  R  *  *  E  K  M  A  S  T  V  M  S  S  L  S  L  K  P  T  F  T  L  E  K  I  S  V  K  G  L  P  S  L  T  R  S  S  S  S  F  K  V  V  A  S  G  V  K  K  L  K  T  D  K  P  Y   : V  S  Q  T  L  W :   N  *  W  K  H  G  L  E  R  W  G  *  C  L  R  Q  E  A  Q   : G  K  G  C  V  P  I  C  *  Q  I  W  S  *  C  *  W  I  Q  :  S  H  L  Q  H  G  *  M  V  S  K  W  *  C  L  C  W  R :   Y  H  W  L  S  H  M  G  G  D  L  A  W  H  S  C  R  R  C  S  P  C  L  Q  H  K  C  F  G  A  I  D  V  I  L  V  L  Y  Y  *  V  *  V  V  F  H  V  I  F  S  K  Y  F  L  A  S  S  L  I  C  N  C  C  D  F  T  V  D  N  I  T  S  N  V  A  V  L  G  S  Y  K  S  F  K  F  S  R  D  W  I  A  K  Q  L  *  A  N  P  I  F  *  S  V  R  N  S  C  N  D  L  K  *  Q  *  Y  M  S  S  Q  T  N  I  Y  * </first_frame>
            <second_frame>  K  G  N  R  R  K  W  Q  A  Q  *  *  A  H  *  A  *  S  Q  L  S  L  W  R  K  Y  Q  *  K  G  F  H  H  L  L  D  L  L  L  P  S  K  L  W  L  V  V  L  R  S  L  R  L  T  N  P  M  :  S  L  K  L  F   : G  I  N  G  S  M  A  L  R  D  G  V  D  A  S  G  R  K  P  K  :  G  K  G  V  Y  Q  Y  V  D  K  Y  G  A  N  V  D  G  Y  S :   P  I  Y  N  T  D  E  W  S  P  S  G  D  V  Y  V  G   : G  T  T  G  L  A  I  W  A  V  T  L  L  G  I  L  A  G  G  A  L  L  V  Y  N  T  S  A  L  A  Q  *  M  L  S  L  Y  C  T  I  K  F  K  L  Y  S  M  L  S  F  Q  N  I  S  W  H  L  H  *  Y  V  I  A  V  I  L  L  W  I  I  L  H  L  M  L  L  F  *  V  L  I  N  L  L  S  L  V  V  I  G  L  P  N  S  Y  K  L  I  Q  Y  F  E  V  *  G  I  P  A  T  I  S  N  N  N  N  I  *  V  H  R  Q  I  F  T   </second_frame>
            <third_frame>   K  V  I  G  E  N  G  K  H  S  N  E  L  I  E  P  K  A  N  F  H  S  G  E  N  I  S  E  R  A  S  I  T  Y  *  I  F  F  F  L  Q  S  C  G  *  W  C  *  E  A  *  D  *  Q  T  L  C :   L  S  N  S  L  :  E  L  M  E  A  W  P  *  E  M  G  L  M  P  Q  A  G  S  P  R :   E  R  V  C  T  N  M  L  T  N  M  E  L  M  L  M  D  T   : V  P  S  T  T  R  M  N  G  L  Q  V  V  M  S  M  L  E  :  V  P  L  A  *  P  Y  G  R  *  P  C  L  A  F  L  Q  E  V  L  S  L  S  T  T  Q  V  L  W  R  N  R  C  Y  P  C  I  V  L  L  S  L  S  C  I  P  C  Y  L  F  K  I  F  L  G  I  F  I  N  M  *  L  L  *  F  Y  C  G  *  Y  Y  I  *  C  C  C  F  R  F  L  *  I  F  *  V  *  S  *  L  D  C  Q  T  V  I  S  *  S  N  I  L  K  C  K  E  F  L  Q  R  S  Q  I  T  I  I  Y  E  F  T  D  K  Y  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="-"/>
                <serials PGL_serial="26" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114263" stop="114177"/>
                    <exon start="113748" stop="113733"/>
                    <exon start="113564" stop="113506"/>
                    <exon start="113349" stop="113294"/>
                    <exon start="113217" stop="113165"/>
                    <exon start="113053" stop="112959"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KGFHHLLDLLLPSKLWLVVLRSLRLTNPMSLKLFGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSALAQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="113359" e_stop="113294"/>
            <exon e_start="113217" e_stop="113165"/>
            <exon e_start="113053" e_stop="112692"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="113359" e_stop="113294" e_length="66"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="113217" e_stop="113165" e_length="53"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="113053" e_stop="112692" e_length="362"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113359" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113350" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294069" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113346" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218131" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113346" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232651" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113344" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232387" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113341" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113340" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113323" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113322" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230896" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113306" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113206" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113194" stop="113165"/>
              <exon start="113053" stop="112836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232463" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113033" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227868" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113027" stop="112836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237171" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113015" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226297" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113015" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226662" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112999" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226668" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG : TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG : GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGTGTAAGGAATTCCTGCAACGATCTCAAATAACAATAATATATGAGTTCACAGACAA</gDNA_template>
            <first_frame> *  C  L  G  K  G  C  V  P  I  C  *  Q  I  W  S  *  C  *  W  I  Q  :  S  H  L  Q  H  G  *  M  V  S  K  W  *  C  L  C  W  R :   Y  H  W  L  S  H  M  G  G  D  L  A  W  H  S  C  R  R  C  S  P  C  L  Q  H  K  C  F  G  A  I  D  V  I  L  V  L  Y  Y  *  V  *  V  V  F  H  V  I  F  S  K  Y  F  L  A  S  S  L  I  C  N  C  C  D  F  T  V  D  N  I  T  S  N  V  A  V  L  G  S  Y  K  S  F  K  F  S  R  D  W  I  A  K  Q  L  *  A  N  P  I  F  *  S  V  R  N  S  C  N  D  L  K  *  Q  *  Y  M  S  S  Q  T  </first_frame>
            <second_frame>  D  V  *  G  K  G  V  Y  Q  Y  V  D  K  Y  G  A  N  V  D  G  Y  S :   P  I  Y  N  T  D  E  W  S  P  S  G  D  V  Y  V  G   : G  T  T  G  L  A  I  W  A  V  T  L  L  G  I  L  A  G  G  A  L  L  V  Y  N  T  S  A  L  A  Q  *  M  L  S  L  Y  C  T  I  K  F  K  L  Y  S  M  L  S  F  Q  N  I  S  W  H  L  H  *  Y  V  I  A  V  I  L  L  W  I  I  L  H  L  M  L  L  F  *  V  L  I  N  L  L  S  L  V  V  I  G  L  P  N  S  Y  K  L  I  Q  Y  F  E  V  *  G  I  P  A  T  I  S  N  N  N  N  I  *  V  H  R  Q </second_frame>
            <third_frame>   M  F  R  E  R  V  C  T  N  M  L  T  N  M  E  L  M  L  M  D  T   : V  P  S  T  T  R  M  N  G  L  Q  V  V  M  S  M  L  E  :  V  P  L  A  *  P  Y  G  R  *  P  C  L  A  F  L  Q  E  V  L  S  L  S  T  T  Q  V  L  W  R  N  R  C  Y  P  C  I  V  L  L  S  L  S  C  I  P  C  Y  L  F  K  I  F  L  G  I  F  I  N  M  *  L  L  *  F  Y  C  G  *  Y  Y  I  *  C  C  C  F  R  F  L  *  I  F  *  V  *  S  *  L  D  C  Q  T  V  I  S  *  S  N  I  L  K  C  K  E  F  L  Q  R  S  Q  I  T  I  I  Y  E  F  T  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="-"/>
                <serials PGL_serial="26" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113349" stop="113294"/>
                    <exon start="113217" stop="113165"/>
                    <exon start="113053" stop="112959"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSALAQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="113220" e_stop="113165"/>
            <exon e_start="113053" e_stop="112811"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="113220" e_stop="113165" e_length="56"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="113053" e_stop="112811" e_length="243"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113220" stop="113165"/>
              <exon start="113053" stop="112811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222306" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113206" stop="113165"/>
              <exon start="113053" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113194" stop="113165"/>
              <exon start="113053" stop="112836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232463" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113033" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227868" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113027" stop="112836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237171" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113015" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226297" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113015" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226662" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112999" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226668" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG : GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAA</gDNA_template>
            <first_frame> Q  S  H  L  Q  H  G  *  M  V  S  K  W  *  C  L  C  W  R :   Y  H  W  L  S  H  M  G  G  D  L  A  W  H  S  C  R  R  C  S  P  C  L  Q  H  K  C  F  G  A  I  D  V  I  L  V  L  Y  Y  *  V  *  V  V  F  H  V  I  F  S  K  Y  F  L  A  S  S  L  I  C  N  C  C  D  F  T  V  D  N  I  T  S  N  V  A  V  L  G  S  Y   </first_frame>
            <second_frame>  S  P  I  Y  N  T  D  E  W  S  P  S  G  D  V  Y  V  G   : G  T  T  G  L  A  I  W  A  V  T  L  L  G  I  L  A  G  G  A  L  L  V  Y  N  T  S  A  L  A  Q  *  M  L  S  L  Y  C  T  I  K  F  K  L  Y  S  M  L  S  F  Q  N  I  S  W  H  L  H  *  Y  V  I  A  V  I  L  L  W  I  I  L  H  L  M  L  L  F  *  V  L  I  </second_frame>
            <third_frame>   V  P  S  T  T  R  M  N  G  L  Q  V  V  M  S  M  L  E  :  V  P  L  A  *  P  Y  G  R  *  P  C  L  A  F  L  Q  E  V  L  S  L  S  T  T  Q  V  L  W  R  N  R  C  Y  P  C  I  V  L  L  S  L  S  C  I  P  C  Y  L  F  K  I  F  L  G  I  F  I  N  M  *  L  L  *  F  Y  C  G  *  Y  Y  I  *  C  C  C  F  R  F  L  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0215P04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="114319" e_stop="114177"/>
            <exon e_start="113564" e_stop="113543"/>
            <exon e_start="112988" e_stop="112831"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="114319" e_stop="114177" e_length="143"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="113564" e_stop="113543" e_length="22"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="113542" i_stop="112989" i_length="554"/>
          </intron>
          <exon e_serial="3" e_score="0.949">
            <gDNA_exon_boundary e_start="112988" e_stop="112831" e_length="158"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114319" stop="114177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114313" stop="114177"/>
              <exon start="113564" stop="113548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114313" stop="114177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114311" stop="114177"/>
              <exon start="113564" stop="113543"/>
              <exon start="112988" stop="112831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114311" stop="114177"/>
              <exon start="113564" stop="113543"/>
              <exon start="112988" stop="112831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114311" stop="114177"/>
              <exon start="113564" stop="113543"/>
              <exon start="112988" stop="112831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341837" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="7" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG : GAATTAATGGAAGCATGGCCTT : GTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTT</gDNA_template>
            <first_frame> S  N  E  L  I  E  P  K  A  N  F  H  S  G  E  N  I  S  E  R  A  S  I  T  Y  *  I  F  F  F  L  Q  S  C  G  *  W  C  *  E  A  *  D  *  Q  T  L  W :   N  *  W  K  H  G  L  :  V  Y  N  T  S  A  L  A  Q  *  M  L  S  L  Y  C  T  I  K  F  K  L  Y  S  M  L  S  F  Q  N  I  S  W  H  L  H  *  Y  V  I  A  V  I  L  L  W  I  I  L  H  L  M   </first_frame>
            <second_frame>  V  M  S  S  L  S  L  K  P  T  F  T  L  E  K  I  S  V  K  G  L  P  S  L  T  R  S  S  S  S  F  K  V  V  A  S  G  V  K  K  L  K  T  D  K  P  Y   : G  I  N  G  S  M  A  L :   S  T  T  Q  V  L  W  R  N  R  C  Y  P  C  I  V  L  L  S  L  S  C  I  P  C  Y  L  F  K  I  F  L  G  I  F  I  N  M  *  L  L  *  F  Y  C  G  *  Y  Y  I  *  C  </second_frame>
            <third_frame>   *  *  A  H  *  A  *  S  Q  L  S  L  W  R  K  Y  Q  *  K  G  F  H  H  L  L  D  L  L  L  P  S  K  L  W  L  V  V  L  R  S  L  R  L  T  N  P  M  :  E  L  M  E  A  W  P   : C  L  Q  H  K  C  F  G  A  I  D  V  I  L  V  L  Y  Y  *  V  *  V  V  F  H  V  I  F  S  K  Y  F  L  A  S  S  L  I  C  N  C  C  D  F  T  V  D  N  I  T  S  N  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="-"/>
                <serials PGL_serial="26" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114318" stop="114177"/>
                    <exon start="113564" stop="113543"/>
                    <exon start="112988" stop="112871"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VMSSLSLKPTFTLEKISVKGLPSLTRSSSSFKVVASGVKKLKTDKPYGINGSMALSTTQVLWRNRCYPCIVLLSLSCIPCYLFKIFLGIFINM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="27" PGL_strand="+" PGL_start="112814" PGL_stop="113053"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112814" e_stop="113053"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="112814" e_stop="113053" e_length="240"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112814" stop="113053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277270" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="27" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAGAACCTAAAACAGCAACATTAGATGTAATATTATCCACAGTAAAATCACAGCAATTACATATTAATGAAGATGCCAAGAAATATTTTGAAAAGATAACATGGAATACAACTTAAACTTAATAGTACAATACAAGGATAACATCTATTGCGCCAAAGCACTTGTGTTGTAGACAAGGAGAGCACCTCCTGCAAGAATGCCAAGCAAGGTCACCGCCCATATGGCTAAGCCAGTGGTAC</gDNA_template>
            <first_frame> *  E  P  K  T  A  T  L  D  V  I  L  S  T  V  K  S  Q  Q  L  H  I  N  E  D  A  K  K  Y  F  E  K  I  T  W  N  T  T  *  T  *  *  Y  N  T  R  I  T  S  I  A  P  K  H  L  C  C  R  Q  G  E  H  L  L  Q  E  C  Q  A  R  S  P  P  I  W  L  S  Q  W  Y </first_frame>
            <second_frame>  K  N  L  K  Q  Q  H  *  M  *  Y  Y  P  Q  *  N  H  S  N  Y  I  L  M  K  M  P  R  N  I  L  K  R  *  H  G  I  Q  L  K  L  N  S  T  I  Q  G  *  H  L  L  R  Q  S  T  C  V  V  D  K  E  S  T  S  C  K  N  A  K  Q  G  H  R  P  Y  G  *  A  S  G   </second_frame>
            <third_frame>   R  T  *  N  S  N  I  R  C  N  I  I  H  S  K  I  T  A  I  T  Y  *  *  R  C  Q  E  I  F  *  K  D  N  M  E  Y  N  L  N  L  I  V  Q  Y  K  D  N  I  Y  C  A  K  A  L  V  L  *  T  R  R  A  P  P  A  R  M  P  S  K  V  T  A  H  M  A  K  P  V  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0215P04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="28" PGL_strand="-" PGL_start="117885" PGL_stop="116348"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="117885" e_stop="117189"/>
            <exon e_start="117092" e_stop="116908"/>
            <exon e_start="116704" e_stop="116348"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.527" acc_prob="0.985" e_score="0.931"/>
          <exon-intron don_prob="0.985" acc_prob="0.896" e_score="1.000"/>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="117885" e_stop="117189" e_length="697"/>
          </exon>
          <intron i_serial="1" don_prob="0.527" acc_prob="0.985">
            <gDNA_intron_boundary i_start="117188" i_stop="117093" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="117092" e_stop="116908" e_length="185"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.896">
            <gDNA_intron_boundary i_start="116907" i_stop="116705" i_length="203"/>
          </intron>
          <exon e_serial="3" e_score="0.950">
            <gDNA_exon_boundary e_start="116704" e_stop="116348" e_length="357"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117885" stop="117189"/>
              <exon start="117092" stop="117064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117885" stop="117377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117329" stop="117189"/>
              <exon start="117092" stop="116908"/>
              <exon start="116704" stop="116348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379596" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="28" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGTTGCCTCTGTATCTTCTTTTTTTTCCTTGGTAAAGATATTTATTAAAAATGGTATCAAGATGGCACAGAAAAGACTACATGACCTAAACTACACCACTCGCTCCAAACATACTACATATTTTCCCCTAATAAGTTTAAAAAACCCACTTCCATCACCTCCAACGGAAAGAGGAATTTTATCCATCAAAGAAAACCAAAAATCCAGCAAGTGTCTAGTAAATGGAGCAAAGAAAGAGCATCCCCATAACTTAACCATCCTATCAAGAGTACAACTATTAGTACAAACATACAAATTCTTGATGCATTTGTTTCTGACTCTGGGTATCTGCAGCCTCCGTATCTCCTTTTAGACCCATTTTATTCCAAGCTGACGTGATGTGTAGTGGAAGTTTCCTAACAGATTCAACCTTTTAGGAGATTCATCATAGCTAGATGGTTTTCATGATGCTGCTCTACCTACCTGTACATTTCCTTTAATGCATGCTTTCAATGATGTCAAAACTACAGCAATTGCTCCATCCTAGGTGGGGGGGGGGGGGGGGGGGAGCTCTAAAATGGTTTCCTTTCTCTTGCTTCCTATTCTTTCTTCTTTGTGTTGGTGGGTGGTTTAGGAGGTGAAGGGGAGCAGCGTGGTTGAGACCGAGACTATCAGGTGGCTAAGTTTCCTTGTGGTGGTCTTGATTCTTCATCAAG : GTGGCAAAGATAGTTTGGCTCTAAAAATAGATACGGTACTGGCCTTCTGTGATGAAATGTGCTTGAAGGACAGAGCTTCTATCCAAGAAGACGGCAATCCACATCACAAAGAGTTTGGCTTGATTCAACCAATGAGCGGAAGGAGATTGTCCAAAGCTGTACACACTCCATGATGTGCGTGCCAG : GTGGATTTCATGCTGGAGTTACTGTAAATAGGGTTGGATTTGTACATTTTTGCGAGAGTGATCTGCATTCCAGCCCCCTCTGAAGCACAGGAGTCAGCTGCATTTCAAATGATTACCCAATTACAGACTATGGCAGACCACACCCATTACATTTAATGATGGCAAAGAAACAGCAACACCAATATTTTTGAATCCTATTAATGGCTACCATACCATAGTACTGTATTAGTTTCATTACTTTCCAGAAGCAACTGTTATGTGTGTCTTTGAGCTGAATTTGTTGTCTTAGAATATTAGTTGGTTGCAACCCGTATCAGTGCTTTGAACATTTATCAAGGCCAAATACATACGGTGCCT</gDNA_template>
            <first_frame> L  V  A  S  V  S  S  F  F  S  L  V  K  I  F  I  K  N  G  I  K  M  A  Q  K  R  L  H  D  L  N  Y  T  T  R  S  K  H  T  T  Y  F  P  L  I  S  L  K  N  P  L  P  S  P  P  T  E  R  G  I  L  S  I  K  E  N  Q  K  S  S  K  C  L  V  N  G  A  K  K  E  H  P  H  N  L  T  I  L  S  R  V  Q  L  L  V  Q  T  Y  K  F  L  M  H  L  F  L  T  L  G  I  C  S  L  R  I  S  F  *  T  H  F  I  P  S  *  R  D  V  *  W  K  F  P  N  R  F  N  L  L  G  D  S  S  *  L  D  G  F  H  D  A  A  L  P  T  C  T  F  P  L  M  H  A  F  N  D  V  K  T  T  A  I  A  P  S  *  V  G  G  G  G  G  G  S  S  K  M  V  S  F  L  L  L  P  I  L  S  S  L  C  W  W  V  V  *  E  V  K  G  S  S  V  V  E  T  E  T  I  R  W  L  S  F  L  V  V  V  L  I  L  H  Q   : G  G  K  D  S  L  A  L  K  I  D  T  V  L  A  F  C  D  E  M  C  L  K  D  R  A  S  I  Q  E  D  G  N  P  H  H  K  E  F  G  L  I  Q  P  M  S  G  R  R  L  S  K  A  V  H  T  P  *  C  A  C  Q  :  V  D  F  M  L  E  L  L  *  I  G  L  D  L  Y  I  F  A  R  V  I  C  I  P  A  P  S  E  A  Q  E  S  A  A  F  Q  M  I  T  Q  L  Q  T  M  A  D  H  T  H  Y  I  *  *  W  Q  R  N  S  N  T  N  I  F  E  S  Y  *  W  L  P  Y  H  S  T  V  L  V  S  L  L  S  R  S  N  C  Y  V  C  L  *  A  E  F  V  V  L  E  Y  *  L  V  A  T  R  I  S  A  L  N  I  Y  Q  G  Q  I  H  T  V  P </first_frame>
            <second_frame>  *  L  P  L  Y  L  L  F  F  P  W  *  R  Y  L  L  K  M  V  S  R  W  H  R  K  D  Y  M  T  *  T  T  P  L  A  P  N  I  L  H  I  F  P  *  *  V  *  K  T  H  F  H  H  L  Q  R  K  E  E  F  Y  P  S  K  K  T  K  N  P  A  S  V  *  *  M  E  Q  R  K  S  I  P  I  T  *  P  S  Y  Q  E  Y  N  Y  *  Y  K  H  T  N  S  *  C  I  C  F  *  L  W  V  S  A  A  S  V  S  P  F  R  P  I  L  F  Q  A  D  V  M  C  S  G  S  F  L  T  D  S  T  F  *  E  I  H  H  S  *  M  V  F  M  M  L  L  Y  L  P  V  H  F  L  *  C  M  L  S  M  M  S  K  L  Q  Q  L  L  H  P  R  W  G  G  G  G  G  G  A  L  K  W  F  P  F  S  C  F  L  F  F  L  L  C  V  G  G  W  F  R  R  *  R  G  A  A  W  L  R  P  R  L  S  G  G  *  V  S  L  W  W  S  *  F  F  I  K  :  V  A  K  I  V  W  L  *  K  *  I  R  Y  W  P  S  V  M  K  C  A  *  R  T  E  L  L  S  K  K  T  A  I  H  I  T  K  S  L  A  *  F  N  Q  *  A  E  G  D  C  P  K  L  Y  T  L  H  D  V  R  A  R :   W  I  S  C  W  S  Y  C  K  *  G  W  I  C  T  F  L  R  E  *  S  A  F  Q  P  P  L  K  H  R  S  Q  L  H  F  K  *  L  P  N  Y  R  L  W  Q  T  T  P  I  T  F  N  D  G  K  E  T  A  T  P  I  F  L  N  P  I  N  G  Y  H  T  I  V  L  Y  *  F  H  Y  F  P  E  A  T  V  M  C  V  F  E  L  N  L  L  S  *  N  I  S  W  L  Q  P  V  S  V  L  *  T  F  I  K  A  K  Y  I  R  C   </second_frame>
            <third_frame>   S  C  L  C  I  F  F  F  F  L  G  K  D  I  Y  *  K  W  Y  Q  D  G  T  E  K  T  T  *  P  K  L  H  H  S  L  Q  T  Y  Y  I  F  S  P  N  K  F  K  K  P  T  S  I  T  S  N  G  K  R  N  F  I  H  Q  R  K  P  K  I  Q  Q  V  S  S  K  W  S  K  E  R  A  S  P  *  L  N  H  P  I  K  S  T  T  I  S  T  N  I  Q  I  L  D  A  F  V  S  D  S  G  Y  L  Q  P  P  Y  L  L  L  D  P  F  Y  S  K  L  T  *  C  V  V  E  V  S  *  Q  I  Q  P  F  R  R  F  I  I  A  R  W  F  S  *  C  C  S  T  Y  L  Y  I  S  F  N  A  C  F  Q  *  C  Q  N  Y  S  N  C  S  I  L  G  G  G  G  G  G  G  E  L  *  N  G  F  L  S  L  A  S  Y  S  F  F  F  V  L  V  G  G  L  G  G  E  G  E  Q  R  G  *  D  R  D  Y  Q  V  A  K  F  P  C  G  G  L  D  S  S  S  R :   W  Q  R  *  F  G  S  K  N  R  Y  G  T  G  L  L  *  *  N  V  L  E  G  Q  S  F  Y  P  R  R  R  Q  S  T  S  Q  R  V  W  L  D  S  T  N  E  R  K  E  I  V  Q  S  C  T  H  S  M  M  C  V  P   : G  G  F  H  A  G  V  T  V  N  R  V  G  F  V  H  F  C  E  S  D  L  H  S  S  P  L  *  S  T  G  V  S  C  I  S  N  D  Y  P  I  T  D  Y  G  R  P  H  P  L  H  L  M  M  A  K  K  Q  Q  H  Q  Y  F  *  I  L  L  M  A  T  I  P  *  Y  C  I  S  F  I  T  F  Q  K  Q  L  L  C  V  S  L  S  *  I  C  C  L  R  I  L  V  G  C  N  P  Y  Q  C  F  E  H  L  S  R  P  N  T  Y  G  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="-"/>
                <serials PGL_serial="28" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117885" stop="117532"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVASVSSFFSLVKIFIKNGIKMAQKRLHDLNYTTRSKHTTYFPLISLKNPLPSPPTERGILSIKENQKSSKCLVNGAKKEHPHNLTILSRVQLLVQTYKFLMHLFLTLGICSLRISF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="-"/>
                <serials PGL_serial="28" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117270" stop="117189"/>
                    <exon start="117092" stop="116920"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVKGSSVVETETIRWLSFLVVVLILHQGGKDSLALKIDTVLAFCDEMCLKDRASIQEDGNPHHKEFGLIQPMSGRRLSKAVHTP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 576 chains have been computed
$ 
$ memory statistics:
$ 1716224 bytes spliced alignments in total
$ 520 spliced alignments have been stored
$ 3300 bytes was the average size of a spliced alignment
$ 54336 bytes predicted gene locations in total
$ 28 predicted gene locations have been stored
$ 1940 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 662 backtrace matrices have been allocated
$ 
$ date finished: 2008-03-07 04:44:44
-->
